BLASTX nr result
ID: Papaver25_contig00036758
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver25_contig00036758
(733 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch... 407 e-111
ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prun... 406 e-111
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [... 403 e-110
emb|CBI36559.3| unnamed protein product [Vitis vinifera] 403 e-110
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch... 403 e-110
ref|XP_007013879.1| DNA/RNA polymerases superfamily protein isof... 402 e-110
ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isof... 402 e-110
ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isof... 402 e-110
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras... 401 e-109
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras... 400 e-109
emb|CAC95026.1| plastid RNA polymerase [Nicotiana tabacum] 400 e-109
ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrat... 400 e-109
ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citr... 400 e-109
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch... 399 e-109
ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch... 398 e-109
ref|XP_006857036.1| hypothetical protein AMTR_s00065p00022170 [A... 398 e-109
ref|NP_973525.2| DNA-directed RNA polymerase 3 [Arabidopsis thal... 398 e-109
ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thal... 398 e-109
dbj|BAE98468.1| chloroplast single subunit DNA-dependent RNA pol... 398 e-109
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch... 398 e-108
>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Fragaria vesca subsp. vesca]
Length = 973
Score = 407 bits (1046), Expect = e-111
Identities = 184/239 (76%), Positives = 216/239 (90%)
Frame = -1
Query: 718 REFL*VIEAVWARGGNVAGLVDREDLLIPGEPHSDDAIEIQKWKWSVSKAKKCNRERHAQ 539
++ L V+E++WARGGN+AGLVDRED+ +P +P S+D EIQ+W+WS KAKK N+ERH+Q
Sbjct: 466 KKVLNVVESIWARGGNIAGLVDREDVPVPEKPPSEDPTEIQEWRWSARKAKKLNQERHSQ 525
Query: 538 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLG 359
RCD ELKLSVAR+MKDE+GFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFAEGRPLG
Sbjct: 526 RCDTELKLSVARRMKDEDGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG 585
Query: 358 KAGLRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRTIDGKRWWLSAEDPFQ 179
K+GLRWLKIHLANLY+GGV+KL Y+ R+ FVDNH+DDI DSA ++G RWWL+AEDP Q
Sbjct: 586 KSGLRWLKIHLANLYSGGVEKLSYDGRISFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQ 645
Query: 178 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERP 2
CLAAC+NLS++L S SP+TVISHLPIHQDGSCNGLQHYAALGRD+LEAAAVNL+AGE+P
Sbjct: 646 CLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKP 704
>ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
gi|462398756|gb|EMJ04424.1| hypothetical protein
PRUPE_ppa000868mg [Prunus persica]
Length = 976
Score = 406 bits (1043), Expect = e-111
Identities = 187/239 (78%), Positives = 215/239 (89%)
Frame = -1
Query: 718 REFL*VIEAVWARGGNVAGLVDREDLLIPGEPHSDDAIEIQKWKWSVSKAKKCNRERHAQ 539
++ L V+E++WARGGN+AGLV+RED+ +P + S+D EIQ+WKWSV KAKK N+ERH+Q
Sbjct: 469 KKVLSVVESIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQEWKWSVRKAKKINQERHSQ 528
Query: 538 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLG 359
RCD ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFAEGRPLG
Sbjct: 529 RCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG 588
Query: 358 KAGLRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRTIDGKRWWLSAEDPFQ 179
K+GLRWLKIHLANLYAGGV+KL YE R+ FVDNH+DDI DSA ++G RWWL+AEDP Q
Sbjct: 589 KSGLRWLKIHLANLYAGGVEKLSYEGRLAFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQ 648
Query: 178 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERP 2
CLAAC+NLS++L S SP+TVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNL+ G++P
Sbjct: 649 CLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVDGDKP 707
>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 882
Score = 403 bits (1036), Expect = e-110
Identities = 185/239 (77%), Positives = 212/239 (88%)
Frame = -1
Query: 718 REFL*VIEAVWARGGNVAGLVDREDLLIPGEPHSDDAIEIQKWKWSVSKAKKCNRERHAQ 539
R L V+E +W GGN+AGLVDRED+ IP +P SDD EIQKWKWSV KAKK N+ERH+Q
Sbjct: 375 RRLLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSVRKAKKINQERHSQ 434
Query: 538 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLG 359
RCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMH HL HLSSDLCRGVLEF EGRPLG
Sbjct: 435 RCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFEEGRPLG 494
Query: 358 KAGLRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRTIDGKRWWLSAEDPFQ 179
K+GLRWLKIHLANLY+GGV+KL ++ R+ FV+NHL +I DSA+ ++GKRWWL AEDPFQ
Sbjct: 495 KSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVNGKRWWLKAEDPFQ 554
Query: 178 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERP 2
CLAAC+NLS++L S+SP+TVISHLPIHQDGSCNGLQHYAALGRD+LEAAAVNL+A E+P
Sbjct: 555 CLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAAEKP 613
>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
Length = 808
Score = 403 bits (1035), Expect = e-110
Identities = 184/239 (76%), Positives = 214/239 (89%)
Frame = -1
Query: 718 REFL*VIEAVWARGGNVAGLVDREDLLIPGEPHSDDAIEIQKWKWSVSKAKKCNRERHAQ 539
R L V+E++WARGGN+ GLVDRE++ +P +P ++D EIQ WKW+ KAKK N+ERH+
Sbjct: 301 RRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSL 360
Query: 538 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLG 359
RCD E+KLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFAEGRPLG
Sbjct: 361 RCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG 420
Query: 358 KAGLRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRTIDGKRWWLSAEDPFQ 179
K+GLRWLKI LANLYAGGV+KL Y+ R+ FVDNHLDD+ DSA ++G RWWL+AEDPFQ
Sbjct: 421 KSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQ 480
Query: 178 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERP 2
CLAAC+NLS++LRSSSP+TVISHLPIHQDGSCNGLQHYAALGR+SLEA+AVNL+AGE+P
Sbjct: 481 CLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKP 539
>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
vinifera]
Length = 979
Score = 403 bits (1035), Expect = e-110
Identities = 184/239 (76%), Positives = 214/239 (89%)
Frame = -1
Query: 718 REFL*VIEAVWARGGNVAGLVDREDLLIPGEPHSDDAIEIQKWKWSVSKAKKCNRERHAQ 539
R L V+E++WARGGN+ GLVDRE++ +P +P ++D EIQ WKW+ KAKK N+ERH+
Sbjct: 472 RRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSL 531
Query: 538 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLG 359
RCD E+KLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFAEGRPLG
Sbjct: 532 RCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG 591
Query: 358 KAGLRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRTIDGKRWWLSAEDPFQ 179
K+GLRWLKI LANLYAGGV+KL Y+ R+ FVDNHLDD+ DSA ++G RWWL+AEDPFQ
Sbjct: 592 KSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQ 651
Query: 178 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERP 2
CLAAC+NLS++LRSSSP+TVISHLPIHQDGSCNGLQHYAALGR+SLEA+AVNL+AGE+P
Sbjct: 652 CLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKP 710
>ref|XP_007013879.1| DNA/RNA polymerases superfamily protein isoform 3 [Theobroma cacao]
gi|508784242|gb|EOY31498.1| DNA/RNA polymerases
superfamily protein isoform 3 [Theobroma cacao]
Length = 927
Score = 402 bits (1034), Expect = e-110
Identities = 184/239 (76%), Positives = 217/239 (90%)
Frame = -1
Query: 718 REFL*VIEAVWARGGNVAGLVDREDLLIPGEPHSDDAIEIQKWKWSVSKAKKCNRERHAQ 539
++ L V+E++WA GGN+AGLVDR D+ IP +P S+D+ E Q+WKWSV KA K NRERH+Q
Sbjct: 471 KKVLAVVESIWASGGNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQ 530
Query: 538 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLG 359
RCD ELKLSVARKM++EEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFAEGRPLG
Sbjct: 531 RCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG 590
Query: 358 KAGLRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRTIDGKRWWLSAEDPFQ 179
++GL WLKIHLANL+AGGV+KL ++ R+ FVDNHLDDI DSA+ I+G RWWL+AEDPFQ
Sbjct: 591 RSGLHWLKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQ 650
Query: 178 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERP 2
CLAAC+NLS+SL+SSSP++V+S+LPIHQDGSCNGLQHYAALGRDSLEAAAVNL+AGE+P
Sbjct: 651 CLAACINLSESLKSSSPHSVLSYLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKP 709
>ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
gi|508784241|gb|EOY31497.1| DNA/RNA polymerases
superfamily protein isoform 2 [Theobroma cacao]
Length = 857
Score = 402 bits (1034), Expect = e-110
Identities = 184/239 (76%), Positives = 217/239 (90%)
Frame = -1
Query: 718 REFL*VIEAVWARGGNVAGLVDREDLLIPGEPHSDDAIEIQKWKWSVSKAKKCNRERHAQ 539
++ L V+E++WA GGN+AGLVDR D+ IP +P S+D+ E Q+WKWSV KA K NRERH+Q
Sbjct: 349 KKVLAVVESIWASGGNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQ 408
Query: 538 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLG 359
RCD ELKLSVARKM++EEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFAEGRPLG
Sbjct: 409 RCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG 468
Query: 358 KAGLRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRTIDGKRWWLSAEDPFQ 179
++GL WLKIHLANL+AGGV+KL ++ R+ FVDNHLDDI DSA+ I+G RWWL+AEDPFQ
Sbjct: 469 RSGLHWLKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQ 528
Query: 178 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERP 2
CLAAC+NLS+SL+SSSP++V+S+LPIHQDGSCNGLQHYAALGRDSLEAAAVNL+AGE+P
Sbjct: 529 CLAACINLSESLKSSSPHSVLSYLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKP 587
>ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
gi|508784240|gb|EOY31496.1| DNA/RNA polymerases
superfamily protein isoform 1 [Theobroma cacao]
Length = 978
Score = 402 bits (1034), Expect = e-110
Identities = 184/239 (76%), Positives = 217/239 (90%)
Frame = -1
Query: 718 REFL*VIEAVWARGGNVAGLVDREDLLIPGEPHSDDAIEIQKWKWSVSKAKKCNRERHAQ 539
++ L V+E++WA GGN+AGLVDR D+ IP +P S+D+ E Q+WKWSV KA K NRERH+Q
Sbjct: 471 KKVLAVVESIWASGGNIAGLVDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQ 530
Query: 538 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLG 359
RCD ELKLSVARKM++EEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFAEGRPLG
Sbjct: 531 RCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG 590
Query: 358 KAGLRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRTIDGKRWWLSAEDPFQ 179
++GL WLKIHLANL+AGGV+KL ++ R+ FVDNHLDDI DSA+ I+G RWWL+AEDPFQ
Sbjct: 591 RSGLHWLKIHLANLFAGGVEKLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQ 650
Query: 178 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERP 2
CLAAC+NLS+SL+SSSP++V+S+LPIHQDGSCNGLQHYAALGRDSLEAAAVNL+AGE+P
Sbjct: 651 CLAACINLSESLKSSSPHSVLSYLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKP 709
>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
subunit RNA polymerase 3; Flags: Precursor
gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
Full=DNA-directed RNA polymerase 3A, chloroplastic;
AltName: Full=NictaRpoT3-syl; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 3A;
Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
RNA polymerase [Nicotiana sylvestris]
gi|21425679|emb|CAC95027.2| plastid RNA polymerase
[Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
bacteriophage-type single subunit RNA polymerase
[Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
bacteriophage-type single subunit RNA polymerase
[Nicotiana sylvestris]
Length = 977
Score = 401 bits (1030), Expect = e-109
Identities = 182/239 (76%), Positives = 217/239 (90%)
Frame = -1
Query: 718 REFL*VIEAVWARGGNVAGLVDREDLLIPGEPHSDDAIEIQKWKWSVSKAKKCNRERHAQ 539
+ L V+E++WA GGN+AGLVDR+D+ IP E HSDD +E++KWKW V K+KK N+E H+Q
Sbjct: 471 KRILSVVESIWAGGGNIAGLVDRKDVPIP-ELHSDDIMEVKKWKWRVRKSKKINQELHSQ 529
Query: 538 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLG 359
RCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRG+LEFAEGRPLG
Sbjct: 530 RCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLG 589
Query: 358 KAGLRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRTIDGKRWWLSAEDPFQ 179
K+GLRWLKIHLA+LYAGG++KL Y+ R+ FV+NH+DDILDSA ++G RWWL+AEDPFQ
Sbjct: 590 KSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNRWWLNAEDPFQ 649
Query: 178 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERP 2
CLAAC+NLS++L+SSSP+TV SHLPIHQDGSCNGLQHYAALGRDS+EAAAVNL+AG++P
Sbjct: 650 CLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKP 708
>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 3B; Flags: Precursor
gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
[Nicotiana tabacum]
Length = 977
Score = 400 bits (1029), Expect = e-109
Identities = 182/239 (76%), Positives = 216/239 (90%)
Frame = -1
Query: 718 REFL*VIEAVWARGGNVAGLVDREDLLIPGEPHSDDAIEIQKWKWSVSKAKKCNRERHAQ 539
+ L V+E++WA GGN+AGLVDR+D+ IP +SDD +E++KWKW V K+KK N+E H+Q
Sbjct: 470 KRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQ 529
Query: 538 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLG 359
RCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRG+LEFAEGRPLG
Sbjct: 530 RCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLG 589
Query: 358 KAGLRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRTIDGKRWWLSAEDPFQ 179
K+GLRWLKIHLA+LYAGGV+KL Y+ R+ FV+NH+ DILDSA ++G RWWL+AEDPFQ
Sbjct: 590 KSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQ 649
Query: 178 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERP 2
CLAAC+NLS++L+SSSP+TVISHLPIHQDGSCNGLQHYAALGRDS+EAAAVNL+AGE+P
Sbjct: 650 CLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKP 708
>emb|CAC95026.1| plastid RNA polymerase [Nicotiana tabacum]
Length = 557
Score = 400 bits (1029), Expect = e-109
Identities = 182/239 (76%), Positives = 216/239 (90%)
Frame = -1
Query: 718 REFL*VIEAVWARGGNVAGLVDREDLLIPGEPHSDDAIEIQKWKWSVSKAKKCNRERHAQ 539
+ L V+E++WA GGN+AGLVDR+D+ IP +SDD +E++KWKW V K+KK N+E H+Q
Sbjct: 53 KRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQ 112
Query: 538 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLG 359
RCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRG+LEFAEGRPLG
Sbjct: 113 RCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLG 172
Query: 358 KAGLRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRTIDGKRWWLSAEDPFQ 179
K+GLRWLKIHLA+LYAGGV+KL Y+ R+ FV+NH+ DILDSA ++G RWWL+AEDPFQ
Sbjct: 173 KSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQ 232
Query: 178 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERP 2
CLAAC+NLS++L+SSSP+TVISHLPIHQDGSCNGLQHYAALGRDS+EAAAVNL+AGE+P
Sbjct: 233 CLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKP 291
>ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata]
gi|297326387|gb|EFH56807.1| PDE319/SCA3 [Arabidopsis
lyrata subsp. lyrata]
Length = 990
Score = 400 bits (1028), Expect = e-109
Identities = 186/239 (77%), Positives = 210/239 (87%)
Frame = -1
Query: 718 REFL*VIEAVWARGGNVAGLVDREDLLIPGEPHSDDAIEIQKWKWSVSKAKKCNRERHAQ 539
R L V+E +WA GGN+AGLV+RED+ IP +P S+D EIQ WKWSV KA K NRERH+
Sbjct: 483 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEEIQSWKWSVRKANKINRERHSL 542
Query: 538 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLG 359
RCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRG LEFAEGRPLG
Sbjct: 543 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 602
Query: 358 KAGLRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRTIDGKRWWLSAEDPFQ 179
K+GL WLKIHLANL+AGGV+KL ++ R+ FV+NHLDDI+DSA+ I GKRWWL AEDPFQ
Sbjct: 603 KSGLHWLKIHLANLFAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 662
Query: 178 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERP 2
CLAAC+ L+ +LRS SPY+VISHLPIHQDGSCNGLQHYAALGRDS EAAAVNL+AGE+P
Sbjct: 663 CLAACVILTQALRSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKP 721
>ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
gi|557556792|gb|ESR66806.1| hypothetical protein
CICLE_v10007333mg [Citrus clementina]
Length = 1012
Score = 400 bits (1027), Expect = e-109
Identities = 181/239 (75%), Positives = 218/239 (91%)
Frame = -1
Query: 718 REFL*VIEAVWARGGNVAGLVDREDLLIPGEPHSDDAIEIQKWKWSVSKAKKCNRERHAQ 539
++ L V+E++W GGN+AGLVDR D+LIP +P S+D E+QKWKWSV KAKK N+ERH+Q
Sbjct: 505 KQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
Query: 538 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLG 359
RCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMH HLNHLSSD+CRGVLEFAEGRPLG
Sbjct: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
Query: 358 KAGLRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRTIDGKRWWLSAEDPFQ 179
K+GLRWLKIHLANL++GGV+KL ++ R+ FV+NHL +I DSA+ I+G RWWL+AEDPFQ
Sbjct: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
Query: 178 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERP 2
CLAAC+NL+++L+SSSP++VISHLPIHQDGSCNGLQHYAALGR++LEAAAVNL+AGE+P
Sbjct: 685 CLAACINLAEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKP 743
>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
tuberosum]
Length = 1015
Score = 399 bits (1026), Expect = e-109
Identities = 181/239 (75%), Positives = 216/239 (90%)
Frame = -1
Query: 718 REFL*VIEAVWARGGNVAGLVDREDLLIPGEPHSDDAIEIQKWKWSVSKAKKCNRERHAQ 539
+ L V+E++WA GGN+AGLVDR+D+ IP E HSDD +E+++WKW V KAKK N+E H+Q
Sbjct: 509 KRILSVVESIWAGGGNIAGLVDRKDVPIP-ELHSDDIMELKRWKWRVRKAKKINQELHSQ 567
Query: 538 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLG 359
RCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRG+LEFAEGRPLG
Sbjct: 568 RCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLG 627
Query: 358 KAGLRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRTIDGKRWWLSAEDPFQ 179
K+GLRWLK+HLA+LYAGG++KL Y+ R+ FV+NH+DDILDSA ++G RWWL+AEDP Q
Sbjct: 628 KSGLRWLKVHLASLYAGGIEKLCYDARIAFVENHIDDILDSAHNPLNGNRWWLNAEDPLQ 687
Query: 178 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERP 2
CLAAC+NLS++L+S SP+TVISHLPIHQDGSCNGLQHYAALGRDS+EAAAVNL+AGE+P
Sbjct: 688 CLAACINLSEALKSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKP 746
>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Citrus
sinensis]
Length = 1009
Score = 398 bits (1023), Expect = e-109
Identities = 181/239 (75%), Positives = 217/239 (90%)
Frame = -1
Query: 718 REFL*VIEAVWARGGNVAGLVDREDLLIPGEPHSDDAIEIQKWKWSVSKAKKCNRERHAQ 539
++ L V+E++W GGN+AGLVDR D+ IP +P S+D E+QKWKWSV KAKK N+ERH+Q
Sbjct: 502 KQVLSVLESIWVSGGNIAGLVDRNDVPIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 561
Query: 538 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLG 359
RCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMH HLNHLSSD+CRGVLEFAEGRPLG
Sbjct: 562 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 621
Query: 358 KAGLRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRTIDGKRWWLSAEDPFQ 179
K+GLRWLKIHLANL++GGV+KL ++ R+ FV+NHL +I DSA+ I+G RWWL+AEDPFQ
Sbjct: 622 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 681
Query: 178 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERP 2
CLAAC+NLS++L+SSSP++VISHLPIHQDGSCNGLQHYAALGR++LEAAAVNL+AGE+P
Sbjct: 682 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKP 740
>ref|XP_006857036.1| hypothetical protein AMTR_s00065p00022170 [Amborella trichopoda]
gi|548861119|gb|ERN18503.1| hypothetical protein
AMTR_s00065p00022170 [Amborella trichopoda]
Length = 987
Score = 398 bits (1023), Expect = e-109
Identities = 180/239 (75%), Positives = 212/239 (88%)
Frame = -1
Query: 718 REFL*VIEAVWARGGNVAGLVDREDLLIPGEPHSDDAIEIQKWKWSVSKAKKCNRERHAQ 539
+ L V+ VWARGG +AGLVDRED+L+P +P ++D +EI+KW+WSV KAKK N ERH+Q
Sbjct: 480 KRILDVVNRVWARGGGIAGLVDREDVLLPEKPDTEDEMEIRKWRWSVKKAKKVNSERHSQ 539
Query: 538 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLG 359
RCD+ELKLSVARKM++EEGFYYPHNLDFRGRAYPMH HLNHL SDLCRG+LEFAEGRPLG
Sbjct: 540 RCDLELKLSVARKMREEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLG 599
Query: 358 KAGLRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRTIDGKRWWLSAEDPFQ 179
K+GLRW KIHLANLYA GVDKL Y+ R+ FV+NHLDDI DSA+R ++GKRWWL+AEDPFQ
Sbjct: 600 KSGLRWSKIHLANLYACGVDKLSYDGRLAFVENHLDDIFDSAERPLEGKRWWLNAEDPFQ 659
Query: 178 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERP 2
CLAACMNL ++L+S +P VISH+P+HQDGSCNGLQHYAALGRD L AAAVNL+AGE+P
Sbjct: 660 CLAACMNLFEALKSPTPENVISHMPVHQDGSCNGLQHYAALGRDRLGAAAVNLVAGEKP 718
>ref|NP_973525.2| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
gi|330252436|gb|AEC07530.1| DNA-directed RNA polymerase 3
[Arabidopsis thaliana]
Length = 895
Score = 398 bits (1023), Expect = e-109
Identities = 184/239 (76%), Positives = 209/239 (87%)
Frame = -1
Query: 718 REFL*VIEAVWARGGNVAGLVDREDLLIPGEPHSDDAIEIQKWKWSVSKAKKCNRERHAQ 539
R L V+E +WA GGN+AGLV+RED+ IP +P S+D E+Q WKWS KA K NRERH+
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545
Query: 538 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLG 359
RCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRG LEFAEGRPLG
Sbjct: 546 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605
Query: 358 KAGLRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRTIDGKRWWLSAEDPFQ 179
K+GL WLKIHLANLYAGGV+KL ++ R+ FV+NHLDDI+DSA+ I GKRWWL AEDPFQ
Sbjct: 606 KSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 665
Query: 178 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERP 2
CLAAC+ L+ +L+S SPY+VISHLPIHQDGSCNGLQHYAALGRDS EAAAVNL+AGE+P
Sbjct: 666 CLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKP 724
>ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
gi|3914826|sp|O24600.1|RPOT3_ARATH RecName:
Full=DNA-directed RNA polymerase 3, chloroplastic; Flags:
Precursor gi|2330560|emb|CAA69972.1| chloroplast
single-subunit DNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|2330564|emb|CAA69717.1| chloroplast
single-subunit DNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|4115372|gb|AAD03373.1| chloroplast single
subunit DNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|110739160|dbj|BAF01496.1| chloroplast single
subunit DNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|330252437|gb|AEC07531.1| DNA-directed RNA
polymerase 3 [Arabidopsis thaliana]
Length = 993
Score = 398 bits (1023), Expect = e-109
Identities = 184/239 (76%), Positives = 209/239 (87%)
Frame = -1
Query: 718 REFL*VIEAVWARGGNVAGLVDREDLLIPGEPHSDDAIEIQKWKWSVSKAKKCNRERHAQ 539
R L V+E +WA GGN+AGLV+RED+ IP +P S+D E+Q WKWS KA K NRERH+
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545
Query: 538 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLG 359
RCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRG LEFAEGRPLG
Sbjct: 546 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605
Query: 358 KAGLRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRTIDGKRWWLSAEDPFQ 179
K+GL WLKIHLANLYAGGV+KL ++ R+ FV+NHLDDI+DSA+ I GKRWWL AEDPFQ
Sbjct: 606 KSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 665
Query: 178 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERP 2
CLAAC+ L+ +L+S SPY+VISHLPIHQDGSCNGLQHYAALGRDS EAAAVNL+AGE+P
Sbjct: 666 CLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKP 724
>dbj|BAE98468.1| chloroplast single subunit DNA-dependent RNA polymerase [Arabidopsis
thaliana]
Length = 786
Score = 398 bits (1023), Expect = e-109
Identities = 184/239 (76%), Positives = 209/239 (87%)
Frame = -1
Query: 718 REFL*VIEAVWARGGNVAGLVDREDLLIPGEPHSDDAIEIQKWKWSVSKAKKCNRERHAQ 539
R L V+E +WA GGN+AGLV+RED+ IP +P S+D E+Q WKWS KA K NRERH+
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545
Query: 538 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLG 359
RCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRG LEFAEGRPLG
Sbjct: 546 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605
Query: 358 KAGLRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRTIDGKRWWLSAEDPFQ 179
K+GL WLKIHLANLYAGGV+KL ++ R+ FV+NHLDDI+DSA+ I GKRWWL AEDPFQ
Sbjct: 606 KSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 665
Query: 178 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERP 2
CLAAC+ L+ +L+S SPY+VISHLPIHQDGSCNGLQHYAALGRDS EAAAVNL+AGE+P
Sbjct: 666 CLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKP 724
>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
sativus]
Length = 975
Score = 398 bits (1022), Expect = e-108
Identities = 184/239 (76%), Positives = 216/239 (90%)
Frame = -1
Query: 718 REFL*VIEAVWARGGNVAGLVDREDLLIPGEPHSDDAIEIQKWKWSVSKAKKCNRERHAQ 539
R L V+E++WA+GGN AGLVDR+D+ IP +P D E+Q+W+WS+ KAKK N+E H+Q
Sbjct: 469 RSVLSVVESLWAQGGNTAGLVDRKDVPIPEKPLGD-LTEMQEWRWSMKKAKKINQELHSQ 527
Query: 538 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHSHLNHLSSDLCRGVLEFAEGRPLG 359
RCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMH HLNHLSSDLCRGVLEFAEGRPLG
Sbjct: 528 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLG 587
Query: 358 KAGLRWLKIHLANLYAGGVDKLPYEERVMFVDNHLDDILDSAQRTIDGKRWWLSAEDPFQ 179
K+GL WLKIHLANLYAGGV+KL Y+ER+ FVD+HLD+I DSA ++G RWWL+AEDPFQ
Sbjct: 588 KSGLHWLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQ 647
Query: 178 CLAACMNLSDSLRSSSPYTVISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLIAGERP 2
CLAACMNLS++L+SS+P+TVIS+LPIHQDGSCNGLQHYAALGRD+LEAAAVNL+AGE+P
Sbjct: 648 CLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKP 706