BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver25_contig00031767
         (525 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006853170.1| hypothetical protein AMTR_s00038p00194050 [A...   154   3e-44
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   139   4e-39
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   139   5e-39
ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II su...   138   6e-39
ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, ...   137   1e-38
ref|XP_007201816.1| hypothetical protein PRUPE_ppa008812mg [Prun...   139   1e-38
ref|XP_007042502.1| DNA-directed RNA polymerase family protein [...   137   2e-38
gb|ADE77570.1| unknown [Picea sitchensis]                             139   7e-38
ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   137   7e-38
ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II su...   137   9e-38
ref|XP_006409557.1| hypothetical protein EUTSA_v10022739mg [Eutr...   132   1e-37
ref|XP_001765827.1| predicted protein [Physcomitrella patens] gi...   142   1e-37
ref|XP_006298158.1| hypothetical protein CARUB_v10014208mg [Caps...   137   2e-37
ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [...   136   2e-37
ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II su...   134   3e-37
ref|XP_006393120.1| hypothetical protein EUTSA_v10011661mg [Eutr...   131   3e-37
ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polype...   131   4e-37
ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata] gi...   137   4e-37
gb|AAM65319.1| DNA-directed RNA polymerase II, third largest sub...   133   2e-36
gb|EXC17267.1| DNA-directed RNA polymerase II subunit [Morus not...   130   3e-36

>ref|XP_006853170.1| hypothetical protein AMTR_s00038p00194050 [Amborella trichopoda]
           gi|548856809|gb|ERN14637.1| hypothetical protein
           AMTR_s00038p00194050 [Amborella trichopoda]
          Length = 324

 Score =  154 bits (389), Expect(2) = 3e-44
 Identities = 80/119 (67%), Positives = 94/119 (78%)
 Frame = -1

Query: 357 MISEVPTIAIDLVEIEVNSTVLNDEFIAHRLGLIPLVSDRAMEMRFSRXXXXXXXXXXXX 178
           M++EVPTIAIDLVEIE NS+VLNDEF+AHRLGLIPL S++AM MRFSR            
Sbjct: 41  MLAEVPTIAIDLVEIEANSSVLNDEFLAHRLGLIPLTSEKAMSMRFSRDCDACDGDGQCE 100

Query: 177 XCSVEFQLSVRCDEDQTVDVTSADLISSDLMVVPVDVALAAARSEGFDSAENKGIIIVK 1
            CSVEFQLSV+CD DQT+DVTSADL+SSD+ V+PVDVA     S GFD++E +GIIIVK
Sbjct: 101 YCSVEFQLSVKCDSDQTLDVTSADLVSSDIHVIPVDVAGRGMDSNGFDASEQRGIIIVK 159



 Score = 50.1 bits (118), Expect(2) = 3e-44
 Identities = 20/25 (80%), Positives = 24/25 (96%)
 Frame = -2

Query: 443 GISYQRFPKIKIRSMRDDYMKFELR 369
           G+SYQRFPK+KIR M+DDY+KFELR
Sbjct: 3   GVSYQRFPKVKIREMKDDYLKFELR 27


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  139 bits (351), Expect(2) = 4e-39
 Identities = 78/119 (65%), Positives = 88/119 (73%)
 Frame = -1

Query: 357 MISEVPTIAIDLVEIEVNSTVLNDEFIAHRLGLIPLVSDRAMEMRFSRXXXXXXXXXXXX 178
           MI+EVPT+AIDLVEIEVNS+VLNDEFIAHRLGLIPL S+RAM MRFSR            
Sbjct: 41  MIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE 100

Query: 177 XCSVEFQLSVRCDEDQTVDVTSADLISSDLMVVPVDVALAAARSEGFDSAENKGIIIVK 1
            CSVEF L  +C  D+T+DVTS DLISSD  VVPVD     + S G+DSA+ KGIIIVK
Sbjct: 101 FCSVEFHLRAKCMTDETLDVTSKDLISSDHTVVPVDF----SDSSGYDSADKKGIIIVK 155



 Score = 47.8 bits (112), Expect(2) = 4e-39
 Identities = 20/25 (80%), Positives = 23/25 (92%)
 Frame = -2

Query: 443 GISYQRFPKIKIRSMRDDYMKFELR 369
           G+SYQRFPKIKIR ++DDY KFELR
Sbjct: 3   GVSYQRFPKIKIREVKDDYAKFELR 27


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
           vinifera]
          Length = 318

 Score =  139 bits (350), Expect(2) = 5e-39
 Identities = 78/119 (65%), Positives = 88/119 (73%)
 Frame = -1

Query: 357 MISEVPTIAIDLVEIEVNSTVLNDEFIAHRLGLIPLVSDRAMEMRFSRXXXXXXXXXXXX 178
           MI+EVPT+AIDLVEIEVNS+VLNDEFIAHRLGLIPL S+RAM MRFSR            
Sbjct: 41  MIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCE 100

Query: 177 XCSVEFQLSVRCDEDQTVDVTSADLISSDLMVVPVDVALAAARSEGFDSAENKGIIIVK 1
            CSVEF L  +C  D+T+DVTS DLISSD  VVPVD     + S G+DSA+ KGIIIVK
Sbjct: 101 FCSVEFHLRAKCMTDETLDVTSKDLISSDHTVVPVDF----SDSSGYDSADKKGIIIVK 155



 Score = 47.8 bits (112), Expect(2) = 5e-39
 Identities = 20/25 (80%), Positives = 23/25 (92%)
 Frame = -2

Query: 443 GISYQRFPKIKIRSMRDDYMKFELR 369
           G+SYQRFPKIKIR ++DDY KFELR
Sbjct: 3   GVSYQRFPKIKIREVKDDYAKFELR 27


>ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Solanum lycopersicum]
          Length = 319

 Score =  138 bits (348), Expect(2) = 6e-39
 Identities = 78/119 (65%), Positives = 88/119 (73%)
 Frame = -1

Query: 357 MISEVPTIAIDLVEIEVNSTVLNDEFIAHRLGLIPLVSDRAMEMRFSRXXXXXXXXXXXX 178
           MI+EVPTIAIDLVEIEVNS+VLNDEFI+HRLGL+PL S+RAM MRFSR            
Sbjct: 41  MIAEVPTIAIDLVEIEVNSSVLNDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCE 100

Query: 177 XCSVEFQLSVRCDEDQTVDVTSADLISSDLMVVPVDVALAAARSEGFDSAENKGIIIVK 1
            CSVEF L V+C  DQT+DVTS DL+SSD  VVPVD + A   S  FD+  NKGIIIVK
Sbjct: 101 YCSVEFYLRVKCLSDQTLDVTSKDLLSSDHTVVPVDYSDA---SSSFDNTPNKGIIIVK 156



 Score = 48.1 bits (113), Expect(2) = 6e-39
 Identities = 19/25 (76%), Positives = 24/25 (96%)
 Frame = -2

Query: 443 GISYQRFPKIKIRSMRDDYMKFELR 369
           G+SYQRFPKIK+R ++DD+MKFELR
Sbjct: 3   GVSYQRFPKIKVREVKDDFMKFELR 27


>ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Solanum tuberosum]
          Length = 319

 Score =  137 bits (345), Expect(2) = 1e-38
 Identities = 77/119 (64%), Positives = 87/119 (73%)
 Frame = -1

Query: 357 MISEVPTIAIDLVEIEVNSTVLNDEFIAHRLGLIPLVSDRAMEMRFSRXXXXXXXXXXXX 178
           MI+EVPTIAIDLVEIEVNS+VLNDEFI+HRLGL+PL S+RAM MRFSR            
Sbjct: 41  MIAEVPTIAIDLVEIEVNSSVLNDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCE 100

Query: 177 XCSVEFQLSVRCDEDQTVDVTSADLISSDLMVVPVDVALAAARSEGFDSAENKGIIIVK 1
            CSVEF L V+C  DQT+DVTS DL+SSD  VVPVD    +  S  FD+  NKGIIIVK
Sbjct: 101 YCSVEFYLRVKCLSDQTLDVTSKDLLSSDHTVVPVDY---SDTSSSFDNTPNKGIIIVK 156



 Score = 48.5 bits (114), Expect(2) = 1e-38
 Identities = 20/25 (80%), Positives = 24/25 (96%)
 Frame = -2

Query: 443 GISYQRFPKIKIRSMRDDYMKFELR 369
           G+SYQRFPKIKIR ++DD+MKFELR
Sbjct: 3   GVSYQRFPKIKIREVKDDFMKFELR 27


>ref|XP_007201816.1| hypothetical protein PRUPE_ppa008812mg [Prunus persica]
           gi|462397216|gb|EMJ03015.1| hypothetical protein
           PRUPE_ppa008812mg [Prunus persica]
          Length = 318

 Score =  139 bits (350), Expect(2) = 1e-38
 Identities = 77/119 (64%), Positives = 87/119 (73%)
 Frame = -1

Query: 357 MISEVPTIAIDLVEIEVNSTVLNDEFIAHRLGLIPLVSDRAMEMRFSRXXXXXXXXXXXX 178
           MI+EVPT+AIDLVEIE+NS+VLNDEFIAHRLGLIPL SDRAM MRFSR            
Sbjct: 41  MIAEVPTVAIDLVEIEINSSVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCE 100

Query: 177 XCSVEFQLSVRCDEDQTVDVTSADLISSDLMVVPVDVALAAARSEGFDSAENKGIIIVK 1
            CSVEF L  +C  DQT+DVTS DL+SSD  VVPVD     + S G +S+E KGIIIVK
Sbjct: 101 FCSVEFHLRAKCHSDQTLDVTSKDLLSSDHTVVPVDF----SDSAGMESSEQKGIIIVK 155



 Score = 46.6 bits (109), Expect(2) = 1e-38
 Identities = 20/25 (80%), Positives = 22/25 (88%)
 Frame = -2

Query: 443 GISYQRFPKIKIRSMRDDYMKFELR 369
           G SYQR P++KIR MRDDYMKFELR
Sbjct: 3   GKSYQRLPRVKIREMRDDYMKFELR 27


>ref|XP_007042502.1| DNA-directed RNA polymerase family protein [Theobroma cacao]
           gi|508706437|gb|EOX98333.1| DNA-directed RNA polymerase
           family protein [Theobroma cacao]
          Length = 318

 Score =  137 bits (345), Expect(2) = 2e-38
 Identities = 78/119 (65%), Positives = 86/119 (72%)
 Frame = -1

Query: 357 MISEVPTIAIDLVEIEVNSTVLNDEFIAHRLGLIPLVSDRAMEMRFSRXXXXXXXXXXXX 178
           MI+EVPTIAIDLVEIEVNS+VLNDEFIAHRLGLIPL S+RAM MRFSR            
Sbjct: 41  MIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE 100

Query: 177 XCSVEFQLSVRCDEDQTVDVTSADLISSDLMVVPVDVALAAARSEGFDSAENKGIIIVK 1
            CSVEF L  +C  DQT+DVTS DL SSD  VVPVD       S G+DS+E +GIIIVK
Sbjct: 101 FCSVEFHLRAKCMTDQTLDVTSKDLYSSDHTVVPVDF----TDSAGYDSSEQRGIIIVK 155



 Score = 47.8 bits (112), Expect(2) = 2e-38
 Identities = 19/25 (76%), Positives = 23/25 (92%)
 Frame = -2

Query: 443 GISYQRFPKIKIRSMRDDYMKFELR 369
           G+SYQRFPK+KIR ++DDY KFELR
Sbjct: 3   GVSYQRFPKVKIRELKDDYAKFELR 27


>gb|ADE77570.1| unknown [Picea sitchensis]
          Length = 330

 Score =  139 bits (349), Expect(2) = 7e-38
 Identities = 75/119 (63%), Positives = 89/119 (74%)
 Frame = -1

Query: 357 MISEVPTIAIDLVEIEVNSTVLNDEFIAHRLGLIPLVSDRAMEMRFSRXXXXXXXXXXXX 178
           MI EVPTIAIDLVEIE NS+VLNDEF+AHRLGLIPL+S+RAM+MRFSR            
Sbjct: 46  MIGEVPTIAIDLVEIESNSSVLNDEFLAHRLGLIPLISERAMDMRFSRDCDTCDGDAQCH 105

Query: 177 XCSVEFQLSVRCDEDQTVDVTSADLISSDLMVVPVDVALAAARSEGFDSAENKGIIIVK 1
            CSVEF+L+V+CD DQT+DVTS DL+SSD+   PV     AA    FD++E +GIIIVK
Sbjct: 106 YCSVEFKLNVKCDGDQTLDVTSLDLVSSDMRENPVVAVDRAADMNVFDASEQRGIIIVK 164



 Score = 44.3 bits (103), Expect(2) = 7e-38
 Identities = 18/23 (78%), Positives = 21/23 (91%)
 Frame = -2

Query: 437 SYQRFPKIKIRSMRDDYMKFELR 369
           SYQRFP +KIR M+DDYMKFEL+
Sbjct: 10  SYQRFPTVKIREMKDDYMKFELK 32


>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
           gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
           II subunit, putative [Ricinus communis]
          Length = 318

 Score =  137 bits (346), Expect(2) = 7e-38
 Identities = 77/119 (64%), Positives = 87/119 (73%)
 Frame = -1

Query: 357 MISEVPTIAIDLVEIEVNSTVLNDEFIAHRLGLIPLVSDRAMEMRFSRXXXXXXXXXXXX 178
           MI+EVPT+AIDLVEIEVNS+VLNDEFIAHRLGLIPL S+RAM MRFSR            
Sbjct: 41  MIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCD 100

Query: 177 XCSVEFQLSVRCDEDQTVDVTSADLISSDLMVVPVDVALAAARSEGFDSAENKGIIIVK 1
            CSVEF L  +C  DQT+DVTS DL SSD  VVPVD     + S G+DS+E +GIIIVK
Sbjct: 101 YCSVEFHLRAKCITDQTLDVTSKDLYSSDHTVVPVDF----SDSSGYDSSEQRGIIIVK 155



 Score = 45.4 bits (106), Expect(2) = 7e-38
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = -2

Query: 443 GISYQRFPKIKIRSMRDDYMKFELR 369
           G SYQRFP+IKIR ++DDY KFELR
Sbjct: 3   GASYQRFPRIKIRELKDDYCKFELR 27


>ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Fragaria vesca subsp. vesca]
          Length = 318

 Score =  137 bits (346), Expect(2) = 9e-38
 Identities = 75/119 (63%), Positives = 89/119 (74%)
 Frame = -1

Query: 357 MISEVPTIAIDLVEIEVNSTVLNDEFIAHRLGLIPLVSDRAMEMRFSRXXXXXXXXXXXX 178
           MI+EVPT+AIDLVEIE+NS+VLNDEFIAHRLGLIPL SDRAM MRFSR            
Sbjct: 41  MIAEVPTVAIDLVEIEINSSVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCE 100

Query: 177 XCSVEFQLSVRCDEDQTVDVTSADLISSDLMVVPVDVALAAARSEGFDSAENKGIIIVK 1
            CSVEF L  RC  DQT+DVTS +L+SSD  VVPVD + A+    G++++E +GIIIVK
Sbjct: 101 YCSVEFHLRARCHSDQTLDVTSKELLSSDHTVVPVDFSDAS----GYEASEQRGIIIVK 155



 Score = 45.1 bits (105), Expect(2) = 9e-38
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = -2

Query: 443 GISYQRFPKIKIRSMRDDYMKFELR 369
           G SYQRFP++KIR MR DY+KFELR
Sbjct: 3   GKSYQRFPRVKIREMRHDYLKFELR 27


>ref|XP_006409557.1| hypothetical protein EUTSA_v10022739mg [Eutrema salsugineum]
           gi|557110719|gb|ESQ51010.1| hypothetical protein
           EUTSA_v10022739mg [Eutrema salsugineum]
          Length = 369

 Score =  132 bits (333), Expect(2) = 1e-37
 Identities = 74/119 (62%), Positives = 85/119 (71%)
 Frame = -1

Query: 357 MISEVPTIAIDLVEIEVNSTVLNDEFIAHRLGLIPLVSDRAMEMRFSRXXXXXXXXXXXX 178
           MISEVPT+AIDLVEI++NS+VLNDEFIAHRLGLIPL S+RAM MR SR            
Sbjct: 91  MISEVPTVAIDLVEIDINSSVLNDEFIAHRLGLIPLTSERAMSMRLSRDCDSCDGDGQCE 150

Query: 177 XCSVEFQLSVRCDEDQTVDVTSADLISSDLMVVPVDVALAAARSEGFDSAENKGIIIVK 1
            CSVEF+L  +C  DQT+DVTS DL S+D  V PVD  L    S G DS+E +GIIIVK
Sbjct: 151 FCSVEFRLQAKCVTDQTLDVTSRDLYSTDPTVTPVDFTL---DSSGTDSSEQRGIIIVK 206



 Score = 49.7 bits (117), Expect(2) = 1e-37
 Identities = 20/29 (68%), Positives = 26/29 (89%)
 Frame = -2

Query: 455 KMESGISYQRFPKIKIRSMRDDYMKFELR 369
           +M++G SYQRFPK+KIR ++DDY KFELR
Sbjct: 49  EMDTGASYQRFPKVKIRELKDDYAKFELR 77


>ref|XP_001765827.1| predicted protein [Physcomitrella patens]
           gi|162683004|gb|EDQ69418.1| predicted protein
           [Physcomitrella patens]
          Length = 324

 Score =  142 bits (359), Expect(2) = 1e-37
 Identities = 75/119 (63%), Positives = 90/119 (75%)
 Frame = -1

Query: 357 MISEVPTIAIDLVEIEVNSTVLNDEFIAHRLGLIPLVSDRAMEMRFSRXXXXXXXXXXXX 178
           MI+EVPT+AIDLVEIE NS+VLNDEF+AHRLGLIP+VSDRAMEMR SR            
Sbjct: 41  MIAEVPTLAIDLVEIESNSSVLNDEFLAHRLGLIPIVSDRAMEMRLSRDCDACDGDGRCE 100

Query: 177 XCSVEFQLSVRCDEDQTVDVTSADLISSDLMVVPVDVALAAARSEGFDSAENKGIIIVK 1
            CS+EF LSV+C  DQT+DVTS DL+SSD  ++PVD A  AA   GF+S + +GI+IVK
Sbjct: 101 YCSIEFHLSVKCTGDQTLDVTSLDLVSSDPSIIPVDAAGRAADMGGFESNDTRGILIVK 159



 Score = 39.7 bits (91), Expect(2) = 1e-37
 Identities = 15/24 (62%), Positives = 21/24 (87%)
 Frame = -2

Query: 440 ISYQRFPKIKIRSMRDDYMKFELR 369
           +SYQRFP ++IR ++DD +KFELR
Sbjct: 4   VSYQRFPTVRIRDIKDDVLKFELR 27


>ref|XP_006298158.1| hypothetical protein CARUB_v10014208mg [Capsella rubella]
           gi|482566867|gb|EOA31056.1| hypothetical protein
           CARUB_v10014208mg [Capsella rubella]
          Length = 319

 Score =  137 bits (344), Expect(2) = 2e-37
 Identities = 77/119 (64%), Positives = 89/119 (74%)
 Frame = -1

Query: 357 MISEVPTIAIDLVEIEVNSTVLNDEFIAHRLGLIPLVSDRAMEMRFSRXXXXXXXXXXXX 178
           MISEVPT+AIDLVEIEVNS+VLNDEFIAHRLGLIPL S+RAM MRFSR            
Sbjct: 41  MISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE 100

Query: 177 XCSVEFQLSVRCDEDQTVDVTSADLISSDLMVVPVDVALAAARSEGFDSAENKGIIIVK 1
            CSVEF+LS +C  DQT+DVTS DL S+D  V PVD  + ++ S   DS+E+KGIIIVK
Sbjct: 101 FCSVEFRLSSKCVTDQTLDVTSRDLYSADPTVTPVDFTIDSSAS---DSSEHKGIIIVK 156



 Score = 45.1 bits (105), Expect(2) = 2e-37
 Identities = 18/25 (72%), Positives = 22/25 (88%)
 Frame = -2

Query: 443 GISYQRFPKIKIRSMRDDYMKFELR 369
           G +YQRFPK+KIR ++DDY KFELR
Sbjct: 3   GATYQRFPKVKIRELKDDYAKFELR 27


>ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
           thaliana] gi|11134646|sp|Q39211.1|NRPB3_ARATH RecName:
           Full=DNA-directed RNA polymerases II, IV and V subunit
           3; AltName: Full=DNA-directed RNA polymerase II 36 kDa
           polypeptide A; AltName: Full=DNA-directed RNA polymerase
           II subunit RPB3-A; Short=RNA polymerase II subunit 3-A;
           Short=RNA polymerase II subunit B3-A
           gi|514318|gb|AAB03741.1| RNA polymerase II third largest
           subunit [Arabidopsis thaliana] gi|4544370|gb|AAD22281.1|
           DNA-directed RNA polymerase II, third largest subunit
           [Arabidopsis thaliana] gi|17381018|gb|AAL36321.1|
           putative DNA-directed RNA polymerase II third largest
           subunit [Arabidopsis thaliana]
           gi|20465883|gb|AAM20046.1| putative DNA-directed RNA
           polymerase II [Arabidopsis thaliana]
           gi|330251306|gb|AEC06400.1| DNA-directed RNA polymerase
           II subunit RPB3-A [Arabidopsis thaliana]
          Length = 319

 Score =  136 bits (342), Expect(2) = 2e-37
 Identities = 77/119 (64%), Positives = 89/119 (74%)
 Frame = -1

Query: 357 MISEVPTIAIDLVEIEVNSTVLNDEFIAHRLGLIPLVSDRAMEMRFSRXXXXXXXXXXXX 178
           MISEVPT+AIDLVEIEVNS+VLNDEFIAHRLGLIPL S+RAM MRFSR            
Sbjct: 41  MISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE 100

Query: 177 XCSVEFQLSVRCDEDQTVDVTSADLISSDLMVVPVDVALAAARSEGFDSAENKGIIIVK 1
            CSVEF+LS +C  DQT+DVTS DL S+D  V PVD  + ++ S   DS+E+KGIIIVK
Sbjct: 101 FCSVEFRLSSKCVTDQTLDVTSRDLYSADPTVTPVDFTIDSSVS---DSSEHKGIIIVK 156



 Score = 45.4 bits (106), Expect(2) = 2e-37
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = -2

Query: 443 GISYQRFPKIKIRSMRDDYMKFELR 369
           G +YQRFPKIKIR ++DDY KFELR
Sbjct: 3   GATYQRFPKIKIRELKDDYAKFELR 27


>ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Cucumis sativus]
          Length = 320

 Score =  134 bits (336), Expect(2) = 3e-37
 Identities = 79/120 (65%), Positives = 86/120 (71%), Gaps = 1/120 (0%)
 Frame = -1

Query: 357 MISEVPTIAIDLVEIEVNSTVLNDEFIAHRLGLIPLVSDRAMEMRFSRXXXXXXXXXXXX 178
           MI+EVPTIAIDLVEIEVNS+VLNDEFIAHRLGLIPL S+RAM MRFSR            
Sbjct: 41  MIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE 100

Query: 177 XCSVEFQLSVRCDEDQTVDVTSADLISSDLMVVPVDVA-LAAARSEGFDSAENKGIIIVK 1
            CSVEF L  +C  DQT+DVTS DL SSD  VVPVD +  AAA  E  D+   KGIIIVK
Sbjct: 101 FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAATGEALDT---KGIIIVK 157



 Score = 47.0 bits (110), Expect(2) = 3e-37
 Identities = 20/25 (80%), Positives = 22/25 (88%)
 Frame = -2

Query: 443 GISYQRFPKIKIRSMRDDYMKFELR 369
           G SYQRFPK+KIR +RDDY KFELR
Sbjct: 3   GSSYQRFPKVKIRELRDDYAKFELR 27


>ref|XP_006393120.1| hypothetical protein EUTSA_v10011661mg [Eutrema salsugineum]
           gi|557089698|gb|ESQ30406.1| hypothetical protein
           EUTSA_v10011661mg [Eutrema salsugineum]
          Length = 320

 Score =  131 bits (330), Expect(2) = 3e-37
 Identities = 74/119 (62%), Positives = 85/119 (71%)
 Frame = -1

Query: 357 MISEVPTIAIDLVEIEVNSTVLNDEFIAHRLGLIPLVSDRAMEMRFSRXXXXXXXXXXXX 178
           MISEVPT+AIDLVEI +NS+VLNDEFIAHRLGLIPL S+RAM MRFSR            
Sbjct: 42  MISEVPTVAIDLVEIMINSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE 101

Query: 177 XCSVEFQLSVRCDEDQTVDVTSADLISSDLMVVPVDVALAAARSEGFDSAENKGIIIVK 1
            CSVEFQL  +C  DQT+DVTS DL S+D  V PVD A   + +   DS+E +GIIIVK
Sbjct: 102 FCSVEFQLGAKCVTDQTLDVTSRDLYSADPTVTPVDFATDPSAT---DSSEQRGIIIVK 157



 Score = 49.3 bits (116), Expect(2) = 3e-37
 Identities = 20/28 (71%), Positives = 25/28 (89%)
 Frame = -2

Query: 452 MESGISYQRFPKIKIRSMRDDYMKFELR 369
           M++G SYQRFPK+KIR ++DDY KFELR
Sbjct: 1   MDTGASYQRFPKVKIRELKDDYAKFELR 28


>ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polypeptide B family protein
           [Populus trichocarpa] gi|550331423|gb|EEE87820.2|
           DNA-directed RNA polymerase II 36 kDa polypeptide B
           family protein [Populus trichocarpa]
          Length = 323

 Score =  131 bits (330), Expect(2) = 4e-37
 Identities = 75/120 (62%), Positives = 86/120 (71%), Gaps = 1/120 (0%)
 Frame = -1

Query: 357 MISEVPTIAIDLVEIEVNSTVLNDEFIAHRLGLIPLVSDRAMEMRFSRXXXXXXXXXXXX 178
           MI+EVPTIAIDLVEIEVNS+VLNDEFIAHRLGLIPL S+RAM MRFSR            
Sbjct: 41  MIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCE 100

Query: 177 XCSVEFQLSVRCDEDQTVDVTSADLISSDLMVVPVDVALAAARSEGFDSAE-NKGIIIVK 1
            CSVEF L  +C  DQT+DVTS DL SSD  V+PVD +  +  ++ FD  E  +GIIIVK
Sbjct: 101 YCSVEFHLRAKCITDQTLDVTSKDLYSSDHAVIPVDFSDPSDANDPFDHTETQRGIIIVK 160



 Score = 48.9 bits (115), Expect(2) = 4e-37
 Identities = 23/28 (82%), Positives = 26/28 (92%)
 Frame = -2

Query: 452 MESGISYQRFPKIKIRSMRDDYMKFELR 369
           MES +SYQRFPKIKIR M+DDY+KFELR
Sbjct: 1   MES-VSYQRFPKIKIREMKDDYLKFELR 27


>ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
           gi|297329735|gb|EFH60154.1| RBP36A [Arabidopsis lyrata
           subsp. lyrata]
          Length = 319

 Score =  137 bits (345), Expect(2) = 4e-37
 Identities = 77/119 (64%), Positives = 88/119 (73%)
 Frame = -1

Query: 357 MISEVPTIAIDLVEIEVNSTVLNDEFIAHRLGLIPLVSDRAMEMRFSRXXXXXXXXXXXX 178
           MISEVPT+AIDLVEIEVNS+VLNDEFIAHRLGLIPL S+RAM MRFSR            
Sbjct: 41  MISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE 100

Query: 177 XCSVEFQLSVRCDEDQTVDVTSADLISSDLMVVPVDVALAAARSEGFDSAENKGIIIVK 1
            CSVEF+LS +C  DQT+DVTS DL S+D  V PVD  + ++ S   DS+E KGIIIVK
Sbjct: 101 FCSVEFRLSAKCVTDQTLDVTSRDLYSADPTVTPVDFTIDSSAS---DSSEQKGIIIVK 156



 Score = 43.1 bits (100), Expect(2) = 4e-37
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -2

Query: 443 GISYQRFPKIKIRSMRDDYMKFELR 369
           G +YQRFPKI IR ++DDY KFELR
Sbjct: 3   GATYQRFPKITIRELKDDYAKFELR 27


>gb|AAM65319.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
           thaliana]
          Length = 319

 Score =  133 bits (334), Expect(2) = 2e-36
 Identities = 76/119 (63%), Positives = 88/119 (73%)
 Frame = -1

Query: 357 MISEVPTIAIDLVEIEVNSTVLNDEFIAHRLGLIPLVSDRAMEMRFSRXXXXXXXXXXXX 178
           MISEVPT+AIDLVEIEVNS+VLNDEFIAHRLGLI L S+RAM MRFSR            
Sbjct: 41  MISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLISLTSERAMSMRFSRDCDACDGDGQCE 100

Query: 177 XCSVEFQLSVRCDEDQTVDVTSADLISSDLMVVPVDVALAAARSEGFDSAENKGIIIVK 1
            CSVEF+LS +C  DQT+DVTS DL S+D  V PVD  + ++ S   DS+E+KGIIIVK
Sbjct: 101 FCSVEFRLSSKCVTDQTLDVTSRDLYSADPTVTPVDFTIDSSVS---DSSEHKGIIIVK 156



 Score = 45.4 bits (106), Expect(2) = 2e-36
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = -2

Query: 443 GISYQRFPKIKIRSMRDDYMKFELR 369
           G +YQRFPKIKIR ++DDY KFELR
Sbjct: 3   GATYQRFPKIKIRELKDDYAKFELR 27


>gb|EXC17267.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
          Length = 588

 Score =  130 bits (326), Expect(2) = 3e-36
 Identities = 74/119 (62%), Positives = 85/119 (71%)
 Frame = -1

Query: 357 MISEVPTIAIDLVEIEVNSTVLNDEFIAHRLGLIPLVSDRAMEMRFSRXXXXXXXXXXXX 178
           MI+EVPTIAIDLVEIEVNS+VLNDEFIAHRLGLIPL SDRAM MRFSR            
Sbjct: 41  MIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCE 100

Query: 177 XCSVEFQLSVRCDEDQTVDVTSADLISSDLMVVPVDVALAAARSEGFDSAENKGIIIVK 1
            CSVEF L  +C  DQT+DVTS DL ++D  VVP+D +  A    G +S + +GIIIVK
Sbjct: 101 FCSVEFLLRAKCISDQTLDVTSKDLYTADHTVVPIDFSDPA----GDESGDQRGIIIVK 155



 Score = 47.8 bits (112), Expect(2) = 3e-36
 Identities = 20/25 (80%), Positives = 23/25 (92%)
 Frame = -2

Query: 443 GISYQRFPKIKIRSMRDDYMKFELR 369
           G SYQRFPK+KIR M+DDY+KFELR
Sbjct: 3   GKSYQRFPKVKIREMKDDYLKFELR 27