BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver25_contig00031275
         (1072 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millet...    95   5e-25
ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus ...    94   2e-24
dbj|BAD83538.2| ribosomal protein S4, partial (mitochondrion) [N...    90   3e-24
ref|YP_003587372.1| ribosomal protein S4 [Cucurbita pepo] gi|259...    86   3e-23
ref|YP_003587235.1| ribosomal protein S4 [Citrullus lanatus] gi|...    86   1e-21
ref|YP_002000578.1| ribosomal protein S4 [Oryza sativa Japonica ...    83   1e-21
gb|AHA47128.1| ribosomal protein S4 (mitochondrion) [Amborella t...    86   3e-21
gb|AHC94278.1| ribosomal protein S4, partial (mitochondrion) [Am...    86   3e-21
ref|YP_173472.1| ribosomal protein S4 [Nicotiana tabacum]              79   1e-19
ref|YP_717175.1| ribosomal protein S4 [Brassica napus] gi|375911...    80   1e-19
gb|ACH78250.1| ribosomal protein S4 [Arabidopsis thaliana]             80   1e-19
ref|XP_004253314.1| PREDICTED: ribosomal protein S4, mitochondri...    77   3e-19
ref|YP_005090421.1| rps4 gene product (mitochondrion) [Boea hygr...    73   6e-18
ref|YP_008802509.1| ribosomal protein S4 (mitochondrion) [Asclep...    97   1e-17
ref|NP_064046.2| rps4 gene product (mitochondrion) [Beta vulgari...    70   4e-17
ref|YP_002608192.1| ribosomal protein S4 [Carica papaya] gi|1705...    77   8e-17
gb|AAW47271.1| ribosomal protein S4 [Eichhornia crassipes]             74   1e-16
gb|AEK66732.1| ribosomal protein S4 [Ferrocalamus rimosivaginus]...    74   2e-16
gb|AGI48778.1| ribosomal protein S4 (mitochondrion) [Lolium pere...    77   2e-16
ref|YP_514660.1| ribosomal protein S4 [Oryza sativa Indica Group...    75   3e-16

>ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millettia pinnata]
           gi|372450274|ref|YP_005090457.1| ribosomal protein S4
           (mitochondrion) [Millettia pinnata]
           gi|357197313|gb|AET62910.1| ribosomal protein S4
           (mitochondrion) [Millettia pinnata]
           gi|357197320|gb|AET62917.1| ribosomal protein S4
           (mitochondrion) [Millettia pinnata]
          Length = 358

 Score = 95.1 bits (235), Expect(2) = 5e-25
 Identities = 66/175 (37%), Positives = 89/175 (50%), Gaps = 36/175 (20%)
 Frame = -3

Query: 785 LHRRERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVKTVRRSVQKF- 618
           +HR    TS +  FLL+LETRL V+LV  HFC   P ARQLISHRRVCV     S+ +  
Sbjct: 82  MHRGTERTS-YIPFLLNLETRLDVILVRLHFCETIPQARQLISHRRVCVNNRMVSITRLK 140

Query: 617 ---GDLFSAPYSKLWLKS----------------------------RISPSEWLHLLKTK 531
              GDL S   +   ++                             R + +EW HLLKTK
Sbjct: 141 VSHGDLISFQENDARIRGEEIRRAFYIEILVDKIIGKFLDHPVRMWRRTKTEWFHLLKTK 200

Query: 530 AGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSK-CLGSHFAEHNKMKSHLYNF 369
            G  +L+KS F ++   Y  +  + +  + +   K CLGS FAEHN+MK +LY+F
Sbjct: 201 RGCRLLLKSRFLQKQLRYSMQKEYLERTKKFGSEKVCLGSSFAEHNRMKRNLYHF 255



 Score = 47.4 bits (111), Expect(2) = 5e-25
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = -1

Query: 961 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVV--ANQNTHIQLATCRKLSLF 788
           +FK+C LL GNVW++EL+I+                R +    N N++IQL T RKLSLF
Sbjct: 14  RFKTCRLLSGNVWNRELTIIQRRILRRLRNKKRSIKRKISPRKNMNSYIQLQTTRKLSLF 73

Query: 787 Y 785
           Y
Sbjct: 74  Y 74


>ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus japonicus]
           gi|357197350|gb|AET62946.1| ribosomal protein S4
           (mitochondrion) [Lotus japonicus]
          Length = 358

 Score = 93.6 bits (231), Expect(2) = 2e-24
 Identities = 68/181 (37%), Positives = 90/181 (49%), Gaps = 42/181 (23%)
 Frame = -3

Query: 785 LHRRERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVKTVRRSVQKF- 618
           +HR    TS +  FLL+LETRL V+LV  HFC   P ARQLISHRRVCV     S+ +  
Sbjct: 82  MHRGTERTS-YIPFLLNLETRLDVILVRLHFCETIPQARQLISHRRVCVNNRMVSITRLK 140

Query: 617 ---GDLFSAPYSKLWLKS----------------------------RISPSEWLHLLKTK 531
              GDL S   +   ++                             R + +EW HLLKTK
Sbjct: 141 VSHGDLISFQENDARIRGEEIRRSFYIEILVEKIIGKFLDHPVRMWRRTKTEWFHLLKTK 200

Query: 530 AGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSK-------CLGSHFAEHNKMKSHLYN 372
            G  +L+KS F ++   Y  +       ED++ +K       CLGS FAEHN+MK +LY+
Sbjct: 201 RGCRLLLKSRFLQQQLRYSMQE------EDFERTKKFGSEKVCLGSSFAEHNRMKRNLYH 254

Query: 371 F 369
           F
Sbjct: 255 F 255



 Score = 47.0 bits (110), Expect(2) = 2e-24
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = -1

Query: 961 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVV--ANQNTHIQLATCRKLSLF 788
           +FK+C LL GNVW++EL+I+                R +    N N++IQL T RKLSLF
Sbjct: 14  RFKTCRLLSGNVWNRELTIIQRRILRRLRKKKRSIKRKIYPRENLNSYIQLQTTRKLSLF 73

Query: 787 Y 785
           Y
Sbjct: 74  Y 74


>dbj|BAD83538.2| ribosomal protein S4, partial (mitochondrion) [Nicotiana tabacum]
          Length = 349

 Score = 89.7 bits (221), Expect(2) = 3e-24
 Identities = 64/172 (37%), Positives = 86/172 (50%), Gaps = 33/172 (19%)
 Frame = -3

Query: 785 LHR-RERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVKTVRRSVQKF 618
           +HR RERT+  +  FLL+LETRL V+LV  HFC   P ARQLISHRRVCV     ++  F
Sbjct: 77  MHRGRERTS--YIPFLLNLETRLDVILVRLHFCETIPQARQLISHRRVCVNNGMVNITHF 134

Query: 617 ----GDLFSAPYSKLWLKS-------------------------RISPSEWLHLLKTKAG 525
               GD+ S   + +  +                          R + +EW  LLKTK G
Sbjct: 135 KLSHGDIISFQENDVRTRGEEIKRSFYIEILVEKIIGKFLDHPWRRTKTEWFRLLKTKRG 194

Query: 524 SHILMKSDFFERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHLYNF 369
             +L+KS F ++           +  +      CLGS FAEHN+MK +LY+F
Sbjct: 195 CRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHF 246



 Score = 50.1 bits (118), Expect(2) = 3e-24
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
 Frame = -1

Query: 961 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVA--NQNTHIQLATCRKLSLF 788
           +FK+C LLLGNVW++EL+I+                R + +  N N++IQL T RKLSLF
Sbjct: 9   RFKTCRLLLGNVWNRELTIIQRRILRRLRNKKRSIKRKIYSRENLNSYIQLQTTRKLSLF 68

Query: 787 Y 785
           Y
Sbjct: 69  Y 69


>ref|YP_003587372.1| ribosomal protein S4 [Cucurbita pepo] gi|259156835|gb|ACV96696.1|
           ribosomal protein S4 [Cucurbita pepo]
          Length = 356

 Score = 86.3 bits (212), Expect(2) = 3e-23
 Identities = 67/179 (37%), Positives = 90/179 (50%), Gaps = 40/179 (22%)
 Frame = -3

Query: 785 LHR-RERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCV---------- 648
           +HR RERT   +  FLL+LETRL V+LV  HF    P ARQLISHRRVCV          
Sbjct: 80  MHRGRERTN--YIPFLLNLETRLDVILVRLHFSSTLPQARQLISHRRVCVNKGMVPITHF 137

Query: 647 -------------------KTVRRS------VQKFGDLFSAPYSKLWLKSRISPSEWLHL 543
                              + +RRS      V+K    F     ++W +++   +EW HL
Sbjct: 138 KVSHGDLISLKENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRRTK---TEWFHL 194

Query: 542 LKTKAGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSK-CLGSHFAEHNKMKSHLYNF 369
           LKTK G  +L+KS F ++       S   +  + +   K CLG  FAEHN+MK +LY+F
Sbjct: 195 LKTKRGCRLLLKSRFLQQLRSSMQESDLERRKKLFGSDKVCLGCSFAEHNRMKRNLYHF 253



 Score = 50.1 bits (118), Expect(2) = 3e-23
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
 Frame = -1

Query: 961 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVA--NQNTHIQLATCRKLSLF 788
           +FK+C LLLGNVW++EL+I+                R + +  N N++IQL T RKLSLF
Sbjct: 12  RFKTCRLLLGNVWNRELTIIQRRILRKLRNKRRSIKRKIYSRENLNSYIQLQTTRKLSLF 71

Query: 787 Y 785
           Y
Sbjct: 72  Y 72


>ref|YP_003587235.1| ribosomal protein S4 [Citrullus lanatus]
           gi|259156791|gb|ACV96653.1| ribosomal protein S4
           [Citrullus lanatus]
          Length = 355

 Score = 86.3 bits (212), Expect(2) = 1e-21
 Identities = 68/180 (37%), Positives = 89/180 (49%), Gaps = 42/180 (23%)
 Frame = -3

Query: 785 LHRRERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVKTVRRSVQKF- 618
           +HR    TS +  FLL+LETRL V+LV  HF    P ARQLISHRRVCV     S+  F 
Sbjct: 80  MHRGTERTS-YIPFLLNLETRLDVILVRLHFSETIPQARQLISHRRVCVNKGMVSITHFK 138

Query: 617 ---GDLFSAPYSKLWLKS----------------------------RISPSEWLHLLKTK 531
              GDL S   +   ++                             R + +EW HLLKTK
Sbjct: 139 VSHGDLISFQENDARIRGEEIRRFFYIEILVEKIIGKFLDHPVRMWRRTKTEWFHLLKTK 198

Query: 530 AGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSK-------CLGSHFAEHNKMKSHLYN 372
            G  +L+KS F ++      RS  ++  ED + +K       CLGS FAEHN+MK +LY+
Sbjct: 199 RGCRLLLKSRFLQQL-----RSSMQE--EDLERTKKFGLEKVCLGSSFAEHNRMKRNLYH 251



 Score = 45.1 bits (105), Expect(2) = 1e-21
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
 Frame = -1

Query: 961 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVA--NQNTHIQLATCRKLSLF 788
           +F++C LLLGNVW++EL+I+                R + +  N N++IQL T RKLSL 
Sbjct: 12  RFQTCRLLLGNVWNRELTIIQRRILRKLRNKKRSIKRKIYSRENLNSYIQLQTTRKLSLN 71

Query: 787 Y 785
           Y
Sbjct: 72  Y 72


>ref|YP_002000578.1| ribosomal protein S4 [Oryza sativa Japonica Group]
           gi|92700092|dbj|BAC19883.2| Ribosomal protein S4 [Oryza
           sativa Japonica Group]
          Length = 352

 Score = 83.2 bits (204), Expect(2) = 1e-21
 Identities = 61/178 (34%), Positives = 85/178 (47%), Gaps = 37/178 (20%)
 Frame = -3

Query: 785 LHR-RERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVK----TVRRS 630
           +HR RERT+  +  FLL+ ETRL V+LV  HFC   P ARQLISHRRVC+     T+   
Sbjct: 73  MHRGRERTS--YIPFLLNQETRLDVILVRLHFCDTLPQARQLISHRRVCLNNGLVTITHL 130

Query: 629 VQKFGDLFSAPYS-----------------------------KLWLKSRISPSEWLHLLK 537
               GDL S   +                             ++W K++   +EW  LL 
Sbjct: 131 KVSHGDLISFQENDARTRGEEIRRSFYIDILVGKIIGKLLPVRIWRKTK---TEWFRLLT 187

Query: 536 TKAGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHLYNFTW 363
           T+    +L+KS F +    Y       +  +      CLGS FAEHN+MK +L++F +
Sbjct: 188 TQRVCRLLLKSWFLQELRSYMQEEDLERTKKFGSAKVCLGSSFAEHNRMKRNLFHFKY 245



 Score = 47.8 bits (112), Expect(2) = 1e-21
 Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
 Frame = -1

Query: 961 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVV--ANQNTHIQLATCRKLSLF 788
           +FK+C LLLGNVW++ELS++                RN+    N N++I+L T RKLSL+
Sbjct: 5   RFKTCRLLLGNVWNRELSLIQRRILRRLRNKRRSIKRNLSQRENLNSNIKLQTTRKLSLY 64

Query: 787 Y 785
           Y
Sbjct: 65  Y 65


>gb|AHA47128.1| ribosomal protein S4 (mitochondrion) [Amborella trichopoda]
          Length = 354

 Score = 85.9 bits (211), Expect(2) = 3e-21
 Identities = 67/178 (37%), Positives = 90/178 (50%), Gaps = 39/178 (21%)
 Frame = -3

Query: 785 LHRRERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVK----TVRRSV 627
           +HR    TS +  FLL+LETRL V+LV  HFC   P ARQLISHRR+CV     ++ R  
Sbjct: 73  MHRGTERTS-YIPFLLNLETRLDVILVRLHFCETLPQARQLISHRRLCVNNGMVSITRLK 131

Query: 626 QKFGDLFSAP---------------YSKLWLKSRI-------------SPSEWLHLLKTK 531
              GDL S                 Y ++ ++  I             + +EW  LLKTK
Sbjct: 132 VSHGDLISLKENYARTRGEERRRFFYIEILVEKMIGKFLDHPVRMWRRTKTEWFRLLKTK 191

Query: 530 AGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSK----CLGSHFAEHNKMKSHLYNF 369
            G  +L+KS F ++      RS  ++  ED + +     CLGS FAEHN+MK +LY F
Sbjct: 192 RGCRLLLKSRFLQQL-----RSSMQE--EDLERTNPFGVCLGSSFAEHNRMKRNLYYF 242



 Score = 43.9 bits (102), Expect(2) = 3e-21
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
 Frame = -1

Query: 961 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVA--NQNTHIQLATCRKLSLF 788
           +F++C  LLGNVW++EL+I+                R + +  N N++I+L T RKLSLF
Sbjct: 5   RFQTCRPLLGNVWNRELTIIQRRILRRLRNKKRSIKRKISSRKNLNSYIKLQTTRKLSLF 64

Query: 787 Y 785
           Y
Sbjct: 65  Y 65


>gb|AHC94278.1| ribosomal protein S4, partial (mitochondrion) [Amborella
           trichopoda]
          Length = 324

 Score = 85.9 bits (211), Expect(2) = 3e-21
 Identities = 67/178 (37%), Positives = 90/178 (50%), Gaps = 39/178 (21%)
 Frame = -3

Query: 785 LHRRERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVK----TVRRSV 627
           +HR    TS +  FLL+LETRL V+LV  HFC   P ARQLISHRR+CV     ++ R  
Sbjct: 73  MHRGTERTS-YIPFLLNLETRLDVILVRLHFCETLPQARQLISHRRLCVNNGMVSITRLK 131

Query: 626 QKFGDLFSAP---------------YSKLWLKSRI-------------SPSEWLHLLKTK 531
              GDL S                 Y ++ ++  I             + +EW  LLKTK
Sbjct: 132 VSHGDLISLKENYARTRGEERRRFFYIEILVEKMIGKFLDHPVRMWRRTKTEWFRLLKTK 191

Query: 530 AGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSK----CLGSHFAEHNKMKSHLYNF 369
            G  +L+KS F ++      RS  ++  ED + +     CLGS FAEHN+MK +LY F
Sbjct: 192 RGCRLLLKSRFLQQL-----RSSMQE--EDLERTNPFGVCLGSSFAEHNRMKRNLYYF 242



 Score = 43.9 bits (102), Expect(2) = 3e-21
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
 Frame = -1

Query: 961 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVA--NQNTHIQLATCRKLSLF 788
           +F++C  LLGNVW++EL+I+                R + +  N N++I+L T RKLSLF
Sbjct: 5   RFQTCRPLLGNVWNRELTIIQRRILRRLRNKKRSIKRKISSRKNLNSYIKLQTTRKLSLF 64

Query: 787 Y 785
           Y
Sbjct: 65  Y 65


>ref|YP_173472.1| ribosomal protein S4 [Nicotiana tabacum]
          Length = 349

 Score = 79.0 bits (193), Expect(2) = 1e-19
 Identities = 61/172 (35%), Positives = 84/172 (48%), Gaps = 33/172 (19%)
 Frame = -3

Query: 785 LHR-RERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVKTVRRSVQKF 618
           +HR RERT+  +  FLL+ ETR  V+ V  HFC   P ARQ ISHRRVCV     ++  F
Sbjct: 77  MHRGRERTS--YIPFLLNPETRSDVIPVRLHFCETIPQARQPISHRRVCVNNGMVNITHF 134

Query: 617 ----GDLFSAP---------------YSKLWLKS----------RISPSEWLHLLKTKAG 525
               GD+ S                 Y ++ ++           R + +EW  LLKTK G
Sbjct: 135 KLSHGDIISFQENDARTRGEEIKRSFYIEISVEKIIGKFLDHPWRRTKTEWFRLLKTKRG 194

Query: 524 SHILMKSDFFERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHLYNF 369
             +L+KS F ++           +  +      CLGS FAEHN+MK +LY+F
Sbjct: 195 CRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHF 246



 Score = 45.4 bits (106), Expect(2) = 1e-19
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = -1

Query: 961 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVA--NQNTHIQLATCRKLSLF 788
           +FK+C LL GNVW++EL+I+                R + +  N N++IQ  T RKLSLF
Sbjct: 9   RFKTCRLLSGNVWNRELTIIQRRILRRLRNKKRSIKRKIYSRENLNSYIQSQTTRKLSLF 68

Query: 787 Y 785
           Y
Sbjct: 69  Y 69


>ref|YP_717175.1| ribosomal protein S4 [Brassica napus] gi|37591124|dbj|BAC98926.1|
           ribosomal protein S4 [Brassica napus]
          Length = 362

 Score = 80.5 bits (197), Expect(2) = 1e-19
 Identities = 61/175 (34%), Positives = 82/175 (46%), Gaps = 39/175 (22%)
 Frame = -3

Query: 785 LHRRERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCV----------- 648
           +HR  + TS +  FLL+LETR  V+L+  HF    P ARQLISHRRVCV           
Sbjct: 87  MHRGTKRTS-YIPFLLNLETRFDVILLRLHFLETIPQARQLISHRRVCVNKGMVSITHLK 145

Query: 647 ------------------KTVRRSVQK-------FGDLFSAPYSKLWLKSRISPSEWLHL 543
                             + +RRS  K        G L   P  ++W +S+   +EW HL
Sbjct: 146 LSHGDIISFQENNAIIRGEEIRRSFYKEILVEKIIGKLLHQPL-RMWRRSK---TEWFHL 201

Query: 542 LKTKAGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHL 378
           LKTK G  +L+KS F ++           +  +      CLGS FAEH +MK +L
Sbjct: 202 LKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNL 256



 Score = 43.5 bits (101), Expect(2) = 1e-19
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
 Frame = -1

Query: 961 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVANQ---NTHIQLATCRKLSL 791
           +F++C LLLGNVW++EL+I+                +  + ++    ++IQL T RKLSL
Sbjct: 18  RFQTCRLLLGNVWNRELTIIQRRILRRLRNRKRSIKKRKIYSKKYLTSYIQLQTTRKLSL 77

Query: 790 FY 785
           FY
Sbjct: 78  FY 79


>gb|ACH78250.1| ribosomal protein S4 [Arabidopsis thaliana]
          Length = 362

 Score = 80.5 bits (197), Expect(2) = 1e-19
 Identities = 61/175 (34%), Positives = 82/175 (46%), Gaps = 39/175 (22%)
 Frame = -3

Query: 785 LHRRERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCV----------- 648
           +HR  + TS +  FLL+LETR  V+L+  HF    P ARQLISHRRVCV           
Sbjct: 87  MHRGTKRTS-YIPFLLNLETRFDVILLRLHFLETIPQARQLISHRRVCVNKGMVSITHFK 145

Query: 647 ------------------KTVRRSVQK-------FGDLFSAPYSKLWLKSRISPSEWLHL 543
                             + +RRS  K        G L   P  ++W +S+   +EW HL
Sbjct: 146 LSHGDIISFQENNAIIRGEEIRRSFYKEILVEKIIGKLLHQPL-RMWRRSK---TEWFHL 201

Query: 542 LKTKAGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHL 378
           LKTK G  +L+KS F ++           +  +      CLGS FAEH +MK +L
Sbjct: 202 LKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNL 256



 Score = 43.5 bits (101), Expect(2) = 1e-19
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
 Frame = -1

Query: 961 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVANQ---NTHIQLATCRKLSL 791
           +F++C LLLGNVW++EL+I+                +  + ++    ++IQL T RKLSL
Sbjct: 18  RFQTCRLLLGNVWNRELTIIQRRILRRLRNRKRSIKKRKIYSKKYLTSYIQLQTTRKLSL 77

Query: 790 FY 785
           FY
Sbjct: 78  FY 79


>ref|XP_004253314.1| PREDICTED: ribosomal protein S4, mitochondrial-like [Solanum
           lycopersicum]
          Length = 449

 Score = 77.4 bits (189), Expect(2) = 3e-19
 Identities = 60/172 (34%), Positives = 83/172 (48%), Gaps = 33/172 (19%)
 Frame = -3

Query: 785 LHR-RERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVKTVRRSVQKF 618
           +HR RERT+  +  FLL+ ETR  V+ V  HFC   P ARQ ISHRRVCV     ++  F
Sbjct: 177 MHRGRERTS--YIPFLLNPETRSDVIPVRLHFCETIPQARQPISHRRVCVNNGMVNITHF 234

Query: 617 ----GDLFSAP---------------YSKLWLKS----------RISPSEWLHLLKTKAG 525
               GD+ S                 Y ++ ++           R + +EW  LLKTK G
Sbjct: 235 KLSHGDIISFQENDARTRGEEIKRSFYIEISVEKIIGKFLDHPWRRTKTEWFRLLKTKRG 294

Query: 524 SHILMKSDFFERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHLYNF 369
             +L+KS F ++           +  +      CLGS FAEHN+MK + Y+F
Sbjct: 295 CRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNFYHF 346



 Score = 45.4 bits (106), Expect(2) = 3e-19
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = -1

Query: 961 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVA--NQNTHIQLATCRKLSLF 788
           +FK+C LL GNVW++EL+I+                R + +  N N++IQ  T RKLSLF
Sbjct: 109 RFKTCRLLSGNVWNRELTIIQRRILGRLRNKKRSIKRKIYSRENLNSYIQSQTTRKLSLF 168

Query: 787 Y 785
           Y
Sbjct: 169 Y 169


>ref|YP_005090421.1| rps4 gene product (mitochondrion) [Boea hygrometrica]
           gi|340549497|gb|AEK53318.1| ribosomal protein S4
           (mitochondrion) [Boea hygrometrica]
          Length = 329

 Score = 72.8 bits (177), Expect(2) = 6e-18
 Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 23/162 (14%)
 Frame = -3

Query: 785 LHRRERTTSEFF*FLLDLETRLGVLLVCTHF---CPPARQLISHRRVCVKTVRRSVQKF- 618
           +HRR + +  +  FLL+ ETR  V+ V  HF    P ARQ ISHRRVCV     ++  F 
Sbjct: 73  MHRRRKRS--YIPFLLNPETRSDVIPVRLHFRETIPQARQTISHRRVCVNNRMVNIIHFK 130

Query: 617 ---GDLFSAPYS----------------KLWLKSRISPSEWLHLLKTKAGSHILMKSDFF 495
              GD+ S   +                ++W +++   +EW    KT  G  +L+KS F 
Sbjct: 131 VSHGDIISFQENDARTEKIIGKFLDRPVRMWRRTK---TEWFRKFKTLKGCRLLLKSQFL 187

Query: 494 ERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHLYNF 369
           ++          +K         CLGS+F EHN+MK +LY+F
Sbjct: 188 QQLRSSMQEEDTKKFGSK---KVCLGSYFDEHNRMKRNLYHF 226



 Score = 45.8 bits (107), Expect(2) = 6e-18
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
 Frame = -1

Query: 961 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVA--NQNTHIQLATCRKLSLF 788
           +FK+C LLLGNVW++EL+I+                R + +  N N++IQ  T RKLSLF
Sbjct: 5   RFKTCRLLLGNVWNRELTIIQRRILKRLRNKKRSIKRKIYSRKNLNSYIQSQTTRKLSLF 64

Query: 787 Y 785
           +
Sbjct: 65  H 65


>ref|YP_008802509.1| ribosomal protein S4 (mitochondrion) [Asclepias syriaca]
           gi|556562347|gb|AGZ63043.1| ribosomal protein S4
           (mitochondrion) [Asclepias syriaca]
          Length = 274

 Score = 96.7 bits (239), Expect = 1e-17
 Identities = 66/175 (37%), Positives = 87/175 (49%), Gaps = 36/175 (20%)
 Frame = -3

Query: 785 LHRRERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVKTVRRSVQKF- 618
           +HRR   TS +  FLL+LETRL V+LV  HFC   P ARQLISHRRVCV     S+  F 
Sbjct: 1   MHRRTERTS-YIPFLLNLETRLDVILVRLHFCETIPQARQLISHRRVCVNNGMVSITHFK 59

Query: 617 ---GDLFSAPYS-----------------------------KLWLKSRISPSEWLHLLKT 534
              GDL S   +                             ++W +++   +EW  LLKT
Sbjct: 60  VSHGDLISFQENVARTQEIRRFFYIEILIEKIIGKFLDHPIRMWRRTK---TEWFRLLKT 116

Query: 533 KAGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHLYNF 369
           K G  +L+KS F ++   Y       +  +      CLGS FAEHN+MK +LY+F
Sbjct: 117 KRGCRLLLKSRFLQQLRSYMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHF 171


>ref|NP_064046.2| rps4 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
           gi|346683270|ref|YP_004842202.1| ribosomal protein S4
           [Beta macrocarpa] gi|87248052|gb|ABD36080.1| ribosomal
           protein S4 [Beta vulgaris subsp. vulgaris]
           gi|148491424|dbj|BAA99356.2| ribosomal protein S4 [Beta
           vulgaris subsp. vulgaris] gi|320148708|emb|CBJ23346.1|
           ribosomal protein S4 [Beta vulgaris subsp. maritima]
           gi|345500188|emb|CBX25007.1| ribosomal protein S4 [Beta
           macrocarpa] gi|384939188|emb|CBL52035.1| ribosoma
           lprotein S4 (mitochondrion) [Beta vulgaris subsp.
           maritima]
          Length = 315

 Score = 70.5 bits (171), Expect(2) = 4e-17
 Identities = 61/189 (32%), Positives = 86/189 (45%), Gaps = 51/189 (26%)
 Frame = -3

Query: 785 LHRRERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVKTVRRSVQKF- 618
           +HRR + TS +  FLL+LETRL V+LV  HFC   P ARQLISHR+VCV     ++  F 
Sbjct: 73  MHRRTKRTS-YIPFLLNLETRLDVILVRLHFCETIPQARQLISHRKVCVNNGIVNISHFK 131

Query: 617 ---GDLFSAP-------------------------------------------YSKLWLK 576
              GD+ S                                             + ++ ++
Sbjct: 132 VSHGDIISFQENYARTRGEEIRKFFYIKILVEKIIGKLRGHRGRLRSRSKTEWFRRVRMR 191

Query: 575 SRISPSEWLHLLKTKAGSHILMKSDFFERFAFYYARSRHRKI*E-DWQCSKCLGSHFAEH 399
           SR S +EW   LKTK G  +L+K  F ++         H  + E D + +K  GS  AEH
Sbjct: 192 SR-SKTEWFRRLKTKKGCRLLLKDRFLQKL--------HSSMQEQDLERTKKFGSD-AEH 241

Query: 398 NKMKSHLYN 372
           N+MK + Y+
Sbjct: 242 NRMKRNFYH 250



 Score = 45.4 bits (106), Expect(2) = 4e-17
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
 Frame = -1

Query: 961 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVVA--NQNTHIQLATCRKLSLF 788
           +FK+C L+ GNVW+KEL++                 + + +  N+N++IQL T RKLSLF
Sbjct: 5   RFKTCRLVSGNVWNKELTLSQRIALRKWRMKKKSIKKKMYSRKNRNSYIQLRTTRKLSLF 64

Query: 787 Y 785
           Y
Sbjct: 65  Y 65


>ref|YP_002608192.1| ribosomal protein S4 [Carica papaya] gi|170522371|gb|ACB20481.1|
           ribosomal protein S4, partial (mitochondrion) [Carica
           papaya]
          Length = 352

 Score = 77.4 bits (189), Expect(2) = 8e-17
 Identities = 65/184 (35%), Positives = 89/184 (48%), Gaps = 45/184 (24%)
 Frame = -3

Query: 785 LHRRERTTSEFF*FLLDLETRLGVLLVCTHF---CPPARQLISHRRVCV----------- 648
           +HR    TS +  F L+ ETRL V+ V  HF    P ARQ ISHRRVCV           
Sbjct: 77  MHRGTERTS-YIPFPLNPETRLDVIPVRLHFRETLPQARQPISHRRVCVNNGMVSITRLK 135

Query: 647 ------------------KTVRR------SVQKFGDLFSAPYSKLWLKSRISPSEWLHLL 540
                             + +RR      SV+K    F     ++W +++   ++W HLL
Sbjct: 136 LSHGDIISFQENDARIRGEEIRRSFYIEISVEKIIGKFRNHPVRMWRRTK---TKWFHLL 192

Query: 539 KTKAGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSK-------CLGSHFAEHNKMKSH 381
           KTK G  +L+KS F ++      RS  +K  ED + +K       CLGS FAEHN+MK +
Sbjct: 193 KTKRGCRLLLKSRFLQKL-----RSSMQK--EDLERTKKFGSEKVCLGSSFAEHNRMKRN 245

Query: 380 LYNF 369
           LY+F
Sbjct: 246 LYHF 249



 Score = 37.4 bits (85), Expect(2) = 8e-17
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = -1

Query: 961 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVV--ANQNTHIQLATCRKLSLF 788
           +FK+C LL GNV ++EL+I+                R +    N N++IQ  T RKLSLF
Sbjct: 9   RFKTCRLLSGNVRNRELTIIQRRILRRLRNKKRSIKRKIYPRKNLNSYIQSQTTRKLSLF 68

Query: 787 Y 785
           +
Sbjct: 69  H 69


>gb|AAW47271.1| ribosomal protein S4 [Eichhornia crassipes]
          Length = 311

 Score = 73.6 bits (179), Expect(2) = 1e-16
 Identities = 58/177 (32%), Positives = 81/177 (45%), Gaps = 36/177 (20%)
 Frame = -3

Query: 785 LHR-RERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVKTVRRSVQKF 618
           +HR RERT+  +  FLL+ ETR  V+ V  HF    P ARQ ISHRRVCV     S+  F
Sbjct: 70  MHRGRERTS--YIPFLLNQETRSDVIPVRLHFSDTLPQARQPISHRRVCVNNGLVSITHF 127

Query: 617 ----GDLFSAPYS----------------------------KLWLKSRISPSEWLHLLKT 534
               GD  S   +                            ++W +++   +EW  LLKT
Sbjct: 128 QVSHGDQISFHENDAGEEKKIRRSFYIDISVGKIIGKFLPVRMWRRTK---TEWFRLLKT 184

Query: 533 KAGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHLYNFTW 363
           + G  +L+KS F +            +         CLGS FAEHN+MK +L++F +
Sbjct: 185 QRGCRLLLKSRFLQELRSSMQEEYLERTKRFGSAKVCLGSSFAEHNRMKKNLFHFKY 241



 Score = 40.4 bits (93), Expect(2) = 1e-16
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = -1

Query: 961 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVV--ANQNTHIQLATCRKLSLF 788
           +FK+C LLLGNV ++ELS++                RN+    N+N++I+  T RKL LF
Sbjct: 2   RFKTCRLLLGNVRNRELSLIQRRILRRLRNKRKSIKRNLSLRENRNSNIKSQTTRKLPLF 61

Query: 787 Y 785
           Y
Sbjct: 62  Y 62


>gb|AEK66732.1| ribosomal protein S4 [Ferrocalamus rimosivaginus]
           gi|372861933|gb|AEX98086.1| ribosomal protein S4
           (mitochondrion) [Ferrocalamus rimosivaginus]
          Length = 344

 Score = 73.9 bits (180), Expect(2) = 2e-16
 Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 37/178 (20%)
 Frame = -3

Query: 785 LHR-RERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVK----TVRRS 630
           +HR RERT+  +  FLL+ ETR  V+ V  HF    P ARQ ISHRRVC+     T+   
Sbjct: 73  MHRGRERTS--YIPFLLNQETRSDVIPVRLHFSDTLPQARQPISHRRVCLNNGLVTITHL 130

Query: 629 VQKFGDLFSAPYS-----------------------------KLWLKSRISPSEWLHLLK 537
               GDL S   +                             ++W +++   +EW  LL 
Sbjct: 131 KVSHGDLISFQENDARTRGEEIRRSFYIDISVGKIIGKFLPVRIWRRTK---TEWFRLLT 187

Query: 536 TKAGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHLYNFTW 363
           T+ G  +L+KS F +    Y       +  +      CLGS FAEHN+MK +L++F +
Sbjct: 188 TQRGCRLLLKSWFLQELRSYMQEEDLERTKKFGSAKVCLGSSFAEHNRMKRNLFHFKY 245



 Score = 39.7 bits (91), Expect(2) = 2e-16
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = -1

Query: 961 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVV--ANQNTHIQLATCRKLSLF 788
           +FK+C LL GNV ++ELS++                RN+    N N++I+L T RKLSL+
Sbjct: 5   RFKTCRLLPGNVRNRELSLIQRRILRRLRNKRRSIKRNLSQRENLNSNIKLQTTRKLSLY 64

Query: 787 Y 785
           Y
Sbjct: 65  Y 65


>gb|AGI48778.1| ribosomal protein S4 (mitochondrion) [Lolium perenne]
          Length = 344

 Score = 76.6 bits (187), Expect(2) = 2e-16
 Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 37/178 (20%)
 Frame = -3

Query: 785 LHR-RERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVK----TVRRS 630
           +HR RERT+  +  FLL+ ETR  V+ V  HF    P ARQ ISHRRVC+     T+   
Sbjct: 73  MHRGRERTS--YIPFLLNQETRSDVIPVRLHFSDTLPQARQPISHRRVCLNNGLVTITHL 130

Query: 629 VQKFGDLFSAPYS-----------------------------KLWLKSRISPSEWLHLLK 537
               GDL S   +                             K+W +++   +EW  LL 
Sbjct: 131 KVSHGDLISFKENDARTRGEEIRRSFYIDISVGKIVGKFLPAKIWRRTK---TEWFRLLT 187

Query: 536 TKAGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHLYNFTW 363
           T+ G  +L+KS F ++   Y       +  +      CLGS FAEHN+MK +L++F +
Sbjct: 188 TQRGCRLLLKSLFLQKLRSYMQEEDFERTKKFGSAKVCLGSSFAEHNRMKRNLFHFKY 245



 Score = 36.6 bits (83), Expect(2) = 2e-16
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = -1

Query: 961 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVV--ANQNTHIQLATCRKLSLF 788
           +FK+C LL GNV ++ELS++                RN+    N N++I+  T RKLS++
Sbjct: 5   RFKTCRLLPGNVRNRELSLIQRRILRRLRNKRRSIKRNLSQRENLNSNIKSQTTRKLSIY 64

Query: 787 Y 785
           Y
Sbjct: 65  Y 65


>ref|YP_514660.1| ribosomal protein S4 [Oryza sativa Indica Group]
           gi|289065037|ref|YP_003433848.1| ribosomal protein small
           subunit 4 [Oryza rufipogon] gi|3025870|gb|AAC26506.1|
           ribosomal protein S4 [Oryza sativa]
           gi|74100098|gb|AAZ99262.1| ribosomal protein S4
           (mitochondrion) [Oryza sativa Indica Group]
           gi|74100153|gb|AAZ99316.1| ribosomal protein S4
           (mitochondrion) [Oryza sativa Japonica Group]
           gi|74100207|gb|AAZ99369.1| ribosomal protein S4
           (mitochondrion) [Oryza sativa Japonica Group]
           gi|285026119|dbj|BAI67952.1| ribosomal protein small
           subunit 4 [Oryza rufipogon] gi|285026169|dbj|BAI68001.1|
           ribosomal protein small subunit 4 [Oryza sativa Indica
           Group] gi|353685225|gb|AER12988.1| ribosomal protein S4
           (mitochondrion) [Oryza sativa Indica Group]
           gi|353685292|gb|AER13054.1| ribosomal protein S4
           (mitochondrion) [Oryza sativa Indica Group]
           gi|374277597|gb|AEZ03703.1| ribosomal protein S4
           (mitochondrion) [Oryza sativa Indica Group]
           gi|374277693|gb|AEZ03798.1| ribosomal protein S4
           (mitochondrion) [Oryza sativa Indica Group]
          Length = 352

 Score = 75.5 bits (184), Expect(2) = 3e-16
 Identities = 58/178 (32%), Positives = 82/178 (46%), Gaps = 37/178 (20%)
 Frame = -3

Query: 785 LHR-RERTTSEFF*FLLDLETRLGVLLVCTHFC---PPARQLISHRRVCVK----TVRRS 630
           +HR RERT+  +  FLL+ ETR  V+ V  HFC   P ARQ ISHRRVC+     T+   
Sbjct: 73  MHRGRERTS--YIPFLLNQETRSDVIPVRLHFCDTLPQARQPISHRRVCLNNGLVTITHL 130

Query: 629 VQKFGDLFSAPYS-----------------------------KLWLKSRISPSEWLHLLK 537
               GDL S   +                             ++W K++   +EW  LL 
Sbjct: 131 KVSHGDLISFQENDARTRGEEIRRSFYIDISVGKIIGKLLPVRIWRKTK---TEWFRLLT 187

Query: 536 TKAGSHILMKSDFFERFAFYYARSRHRKI*EDWQCSKCLGSHFAEHNKMKSHLYNFTW 363
           T+    +L+KS F +    Y       +  +      CLGS FAEHN+MK +L++F +
Sbjct: 188 TQRVCRLLLKSWFLQELRSYMQEEDLERTKKFGSAKVCLGSSFAEHNRMKRNLFHFKY 245



 Score = 37.4 bits (85), Expect(2) = 3e-16
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = -1

Query: 961 QFKSCHLLLGNVWHKELSIVXXXXXXXXXXXXXXXXRNVV--ANQNTHIQLATCRKLSLF 788
           +FK+C LL GNV ++ELS++                RN+    N N++I+  T RKLSL+
Sbjct: 5   RFKTCRLLPGNVRNRELSLIQRRILRRLRNKRRSIKRNLSQRENLNSNIKSQTTRKLSLY 64

Query: 787 Y 785
           Y
Sbjct: 65  Y 65