BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver25_contig00029103
         (2075 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]    85   2e-56
gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea ...    78   5e-47
gb|AAT69624.1| putative polyprotein [Oryza sativa Japonica Group]      74   6e-46
gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]      77   9e-46
gb|ABA98885.1| retrotransposon protein, putative, Ty1-copia subc...    74   1e-45
gb|ABA99813.1| retrotransposon protein, putative, Ty1-copia subc...    74   1e-45
gb|AAP54390.2| retrotransposon protein, putative, Ty1-copia subc...    74   5e-45
gb|AAS07202.1| putative integrase [Oryza sativa Japonica Group] ...    73   5e-45
gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sa...    74   5e-45
gb|ABA96132.1| retrotransposon protein, putative, Ty1-copia subc...    74   5e-45
gb|AAL31653.1|AC079179_8 Putative polyprotein from transposon TN...    74   6e-45
gb|AAK39592.1|AC025296_27 putative retrotransposon polyprotein [...    73   7e-45
gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subc...    74   8e-45
gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japo...    74   8e-45
emb|CAE05248.2| OSJNBb0115I09.10 [Oryza sativa Japonica Group]         74   1e-44
gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subc...    73   1e-44
dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica ...    73   2e-44
dbj|BAB03249.1| polyprotein [Oryza sativa]                             74   2e-44
gb|AAP50927.1| putative polyprotein [Oryza sativa Japonica Group...    74   2e-44
gb|ABA97586.1| retrotransposon protein, putative, Ty1-copia subc...    70   4e-44

>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
          Length = 1316

 Score = 85.1 bits (209), Expect(5) = 2e-56
 Identities = 56/170 (32%), Positives = 96/170 (56%), Gaps = 9/170 (5%)
 Frame = +1

Query: 214 NYKSMHKLASIDYVPKFSLDFDHKSEFYVESKYAIKPFSKNVQSNSKPLELIQLGLVEMS 393
           NY ++ +L +++++P F ++ +HK E  VE+K     F ++V+ N++PL+LI   + ++ 
Sbjct: 481 NYDTLRRLINLNHIPTFQINSNHKCETCVEAKLTRSSF-QSVERNTEPLDLIHSDICDLK 539

Query: 394 STRTKVVKGSL*LS*MIVRGTLLYN*LGVRMIP*KP*E----YKLEIESEVYVTTKLVRS 561
             +T+   G        V  +  Y  + +     +  E    YK E+E+++    K++RS
Sbjct: 540 FVQTR---GGNKYFITFVDDSTKYCYVYLLKSKDEAIEKFVLYKTEVENQLNKKIKVLRS 596

Query: 562 KHDGKYE-----IHMLNGIIHEIASPYSP*SNGIVERKSRIIKEMIYAML 696
              G+YE     I   +GIIHE  +PYSP SNG+ ERK+R +KEM+ AML
Sbjct: 597 DRGGEYESPFVDICAQHGIIHETTAPYSPQSNGVAERKNRTLKEMMNAML 646



 Score = 84.0 bits (206), Expect(5) = 2e-56
 Identities = 69/198 (34%), Positives = 92/198 (46%), Gaps = 11/198 (5%)
 Frame = +2

Query: 1064 VDPRRSKMIITETSYGLNYIIFLY*SEFQTRKETITFIEIPFR*EASFSEMDSIRQIRLG 1243
            V+PRRSK + TE S+G +++ F+   E QT KE +   E     EA  SE+DSI Q    
Sbjct: 787  VEPRRSKRVRTEKSFGPDFLTFMLEGEPQTFKEAVNSTEGLMWKEAIKSEIDSILQNHTW 846

Query: 1244 SLLVYL*GVRPYD*MSL*EET*GRW---NCGKI*G*LXXXXXXXXXXXX--------ISS 1390
             L+    G +P            +W      K+ G +                      +
Sbjct: 847  ELVDLPPGCKPLS---------SKWIFKRKMKVDGSIDKYKARLVIKGYRQTEGLDYFDT 897

Query: 1391 YSALTRISSFEMLIYFAAINNLEIHQVDVKITF*NCELDK*IYIEQPEDFVVKGYENKFC 1570
            YS +TRI+S  M++  AA+ NLEIHQ+D+K           IY+EQPE F   G E K C
Sbjct: 898  YSPVTRINSIRMVLAIAALRNLEIHQMDMKE----------IYMEQPEGFSAPGQEKKVC 947

Query: 1571 KLNKYLYDSK*ARK**HE 1624
            KL K LY  K A K  HE
Sbjct: 948  KLVKSLYGLKQAPKQWHE 965



 Score = 71.2 bits (173), Expect(5) = 2e-56
 Identities = 49/137 (35%), Positives = 68/137 (49%)
 Frame = +3

Query: 1659 VNESDKYIYK*LVKDACVIVCLYVDDMLIPDTNIDVINSTKTCTXXXXXXXXXXPF*CNL 1838
            +NE DK +Y    +   VIVCLYVDDMLI  ++  +I STK                  L
Sbjct: 978  INECDKCVYVKDTEHGYVIVCLYVDDMLIVGSDDKMITSTKNMLNSRFDMKDMGLADVIL 1037

Query: 1839 RDED*KIIKHL*S*SFSLC*IVLKRYNQCDCKPASTPYDYSCILKKNKGSGVS*LEYSRV 2018
              +  +    L          +L ++++ +   A TP D +  L KNKG  VS +EYSR+
Sbjct: 1038 GIKIKRTSNELILSQSHYVDKILGKFDKDNSGVARTPVDVTLHLSKNKGESVSQVEYSRI 1097

Query: 2019 IGCLMNFMNCKSPEIAY 2069
            IG LM  M+C  P+IAY
Sbjct: 1098 IGSLMYLMSCTRPDIAY 1114



 Score = 43.1 bits (100), Expect(5) = 2e-56
 Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 22/111 (19%)
 Frame = +3

Query: 705 ITQNLWEEVVL*FCYILNRVTFKGWDKN----------SYDYEKIYNLFMHTS------- 833
           + QN+W E +L   Y+LN+V  K  +K           SY Y +++      +       
Sbjct: 651 LPQNMWGEAILTANYLLNKVPKKKAEKTPYELWKGRKPSYTYLRMWGCLAKVAVPPPKKV 710

Query: 834 KCGG-----V*IRFLEYPTAYRFLVVCSDFSDFGVKVITESRDAEFFEHVY 971
           K G      + I +     AYRFLV  S+  D     I ESR+A FFE V+
Sbjct: 711 KIGPKTIDCIFIGYAHNSNAYRFLVYESNIPDIHKNTIMESRNASFFEDVF 761



 Score = 26.9 bits (58), Expect(5) = 2e-56
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +3

Query: 81  FLGNSYRT*GLYKLKGKS---DEVNIVDSCAFFCASLNVLHGRLGTV 212
           ++G  Y + G++KL   +     +N   +  +   S N+ HGRLG V
Sbjct: 434 YVGKGYMSDGMWKLNVMTIIKSNMNKASTSTYMLESSNLWHGRLGHV 480


>gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea mays]
          Length = 1309

 Score = 78.2 bits (191), Expect(4) = 5e-47
 Identities = 63/194 (32%), Positives = 94/194 (48%), Gaps = 6/194 (3%)
 Frame = +2

Query: 1061 NVDPRRSKMIITETSYGLNYIIFLY*SEFQTRKETITFIEIPFR*EASFSEMDSIRQIRL 1240
            +++ RRSK   TE S G +YII+L   E ++  E  T  +  +  EA  SEMDSI     
Sbjct: 770  DLELRRSKRQRTEKSLGDDYIIYLVDEEPRSLTEAYTSPDAEYWREAVLSEMDSIISNGT 829

Query: 1241 GSLLVYL*GVRP------YD*MSL*EET*GRWNCGKI*G*LXXXXXXXXXXXXISSYSAL 1402
              +     G +P      +      + T  ++    +                  +YS +
Sbjct: 830  WEITDLPAGCKPVGCKWIFRRKRRPDGTIEKYKARLV----AKGFTQKKEEDYFDTYSPV 885

Query: 1403 TRISSFEMLIYFAAINNLEIHQVDVKITF*NCELDK*IYIEQPEDFVVKGYENKFCKLNK 1582
             R+ +  +L+  AA   L +HQ+DVK  F N EL++ IY++QPE FVVKG E+K C+L K
Sbjct: 886  ARLPTIRVLLALAAAYKLLVHQMDVKTAFLNGELEEEIYMQQPEGFVVKGQESKVCRLIK 945

Query: 1583 YLYDSK*ARK**HE 1624
             LY  K A +  HE
Sbjct: 946  SLYGLKQAPRQWHE 959



 Score = 68.9 bits (167), Expect(4) = 5e-47
 Identities = 51/140 (36%), Positives = 69/140 (49%), Gaps = 3/140 (2%)
 Frame = +3

Query: 1659 VNESDKYIYK*LVKDACVIVCLYVDDMLIPDTNIDVINSTKTCTXXXXXXXXXXPF*CNL 1838
            VNE+DK +Y        VI+CLYVDD+LI  T+++ I  TK                  L
Sbjct: 972  VNEADKCVYYRFSGGKGVIMCLYVDDILIFGTDLEAIMETKLFLSKNFDMKDLGEADVIL 1031

Query: 1839 RDED*KIIKHL*S*SFSLC*IVLK---RYNQCDCKPASTPYDYSCILKKNKGSGVS*LEY 2009
                 K+IK     + S    V K   R+   DCKP +TPYD S  L K +G  V+ L Y
Sbjct: 1032 NI---KLIKGEDGITLSQSHYVEKVMTRFGHMDCKPVTTPYDPSYTLSKYEGEPVNQLLY 1088

Query: 2010 SRVIGCLMNFMNCKSPEIAY 2069
            S++IG LM   +   P+I+Y
Sbjct: 1089 SQIIGSLMYLSSATRPDISY 1108



 Score = 63.9 bits (154), Expect(4) = 5e-47
 Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 10/171 (5%)
 Frame = +1

Query: 214 NYKSMHKLASIDYVPKFSLDFDHKSEFYVESKYAIKPFSKNVQSNSKPLELIQLGLVEMS 393
           N++++ +L+ +  +P++      K    V++K   KPF      ++ PLELI   + EM+
Sbjct: 459 NFEAIKRLSDMSLIPEYKHVKGVKCGICVQAKQPRKPFHTVEGRSTTPLELIHSDICEMN 518

Query: 394 STRTKVVKGSL*LS*MIVRGTLLYN*LGVRMIP*KP*E----YKLEIESEVYVTTKLVRS 561
                ++KG       ++     +  + +     +  E    YK E+E+++    K +RS
Sbjct: 519 GI---IIKGGKRYFLTLIDDATRFCYIYLLRTKDEALEHFKIYKTEVENQLDKKIKRLRS 575

Query: 562 KHDGKYEIHMLN------GIIHEIASPYSP*SNGIVERKSRIIKEMIYAML 696
              G+Y  ++ +      GIIHE  +PYSP SNG+ ERK+R + ++  A+L
Sbjct: 576 DRGGEYLSNLFDEYCKECGIIHETTAPYSPQSNGVAERKNRTVCDLANALL 626



 Score = 47.4 bits (111), Expect(4) = 5e-47
 Identities = 39/108 (36%), Positives = 47/108 (43%), Gaps = 24/108 (22%)
 Frame = +3

Query: 720 WEEVVL*FCYILNRVT-----------FKG----------WD---KNSYDYEKIYNLFMH 827
           W E VL  CY+LNRV            FKG          W    K +    K   L   
Sbjct: 636 WGEAVLTVCYVLNRVPPRNREATPYEGFKGRKPDLSHLRTWGCLAKVNVPLPKKRKLGPK 695

Query: 828 TSKCGGV*IRFLEYPTAYRFLVVCSDFSDFGVKVITESRDAEFFEHVY 971
           T  C  V + +     AYRFLVV S+ S+  V VI ESRD  FFE ++
Sbjct: 696 TVDC--VFLGYAHNSAAYRFLVVHSETSEIAVNVIMESRDVTFFESIF 741


>gb|AAT69624.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1401

 Score = 73.9 bits (180), Expect(4) = 6e-46
 Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
 Frame = +1

Query: 214  NYKSMHKLASIDYVPKFSLDFDHKSEFYVESKYAIKPFSKNVQSNSKPLELIQLGLVEMS 393
            N+  M +LA++  +PKF+L    K    V+SK   KP   +   N  PLEL+   L EM+
Sbjct: 577  NFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMN 636

Query: 394  STRTKVVKGS-L*LS*MIVRGTLLYN*LGVRMIP*KP*E------YKLEIESEVYVTTKL 552
               TK  K   + L     R   +Y      ++  K         YK E+E+++    K 
Sbjct: 637  GVLTKGGKKYFMTLIDDCTRFCYVY------LLKTKDEALHYFKIYKAEVENQLERKIKR 690

Query: 553  VRSKHDGKYEIHMLN------GIIHEIASPYSP*SNGIVERKSRIIKEMIYAML 696
            +RS   G+Y  +         GIIHE+  PYSP SNG+ ERK+R + EM+ AML
Sbjct: 691  LRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAML 744



 Score = 71.6 bits (174), Expect(4) = 6e-46
 Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 6/193 (3%)
 Frame = +2

Query: 1064 VDPRRSKMIITETSYGLNYIIFLY*SEFQTRKETITFIEIPFR*EASFSEMDSIRQIRLG 1243
            VD R+SK      S+G +YI++L     +T +ET +  +  +  EA  SEMDSI      
Sbjct: 879  VDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEETYSSPDADYWKEAVRSEMDSIMSNGTW 938

Query: 1244 SLLVYL*GVRPYD*MSL*EE------T*GRWNCGKI*G*LXXXXXXXXXXXXISSYSALT 1405
             ++    G +P     + ++      T  ++    +                  +YS + 
Sbjct: 939  EVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV----AKGYTQKEGEDFFDTYSPVA 994

Query: 1406 RISSFEMLIYFAAINNLEIHQVDVKITF*NCELDK*IYIEQPEDFVVKGYENKFCKLNKY 1585
            R+++  +L+  AA + L +HQ+DVK  F N EL++ IY++QP+ +V++G +   CKL K 
Sbjct: 995  RLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQKGMVCKLLKS 1054

Query: 1586 LYDSK*ARK**HE 1624
            LY  K A K  HE
Sbjct: 1055 LYGLKQAPKQWHE 1067



 Score = 65.5 bits (158), Expect(4) = 6e-46
 Identities = 49/141 (34%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
 Frame = +3

Query: 1659 VNESDKYIYK*LVKDACVIVCLYVDDMLIPDTNIDVINSTKTCTXXXXXXXXXXP----F 1826
            VNE+DK +Y        VI+CLYVDD+LI  T+++VI   K                   
Sbjct: 1080 VNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVIL 1139

Query: 1827 *CNLRDED*KIIKHL*S*SFSLC*IVLKRYNQCDCKPASTPYDYSCILKKNKGSGVS*LE 2006
               L+  D   I  + S        VL R+   DCKPA TPYD S +L+KN+      L 
Sbjct: 1140 NIKLQRGDEGGITLVQSHYVDK---VLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLR 1196

Query: 2007 YSRVIGCLMNFMNCKSPEIAY 2069
            YS++IG LM   +   P+I++
Sbjct: 1197 YSQIIGSLMYLASATRPDISF 1217



 Score = 43.9 bits (102), Expect(4) = 6e-46
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
 Frame = +3

Query: 705  ITQNLWEEVVL*FCYILNRVTFKGWD----KNSYDYEKIYNLFMHTSKCGGV*IRFLEYP 872
            +++  W E VL  C++LN++  K  +    K +    K   L   T  C  V + +  + 
Sbjct: 749  LSKEWWGEAVLTACHVLNKIPMKHKEGCLAKVNVPIAKKRKLEPKTVDC--VFLGYAIHS 806

Query: 873  TAYRFLVVCSDFSDFGVKVITESRDAEFFEHVY 971
              YRFL+V S   D     I ESRDA FFE+ +
Sbjct: 807  AGYRFLIVNSGVPDMHAGTILESRDATFFENEF 839


>gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1268

 Score = 77.0 bits (188), Expect(4) = 9e-46
 Identities = 60/173 (34%), Positives = 86/173 (49%), Gaps = 12/173 (6%)
 Frame = +1

Query: 214 NYKSMHKLASIDYVPKFSLDFDHKSEFYVESKYAIKPFSKNVQSNSKPLELIQLGLVEMS 393
           N+  M +LA++  +PKF+L  D K    V+SK   KP   +   N  PLEL+   L EM+
Sbjct: 407 NFGCMTRLANMSLIPKFTLVKDSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMN 466

Query: 394 STRTKVVKGSL*LS*MIVRGTLLYN*LGVRMIP*KP*E------YKLEIESEVYVTTKLV 555
              TK   G    + +I   T       V ++  K         YK E+E+++    K +
Sbjct: 467 GVLTK--GGKKYFTTLIDDCTRFCY---VYLLKTKDEALHFFKIYKAEVENQLERKIKRL 521

Query: 556 RSKHDGKYEIHMLN------GIIHEIASPYSP*SNGIVERKSRIIKEMIYAML 696
           RS   G+Y  +         GIIHE+  PYSP SNG+ ERK+R + EM+ AML
Sbjct: 522 RSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAML 574



 Score = 71.2 bits (173), Expect(4) = 9e-46
 Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 6/193 (3%)
 Frame = +2

Query: 1064 VDPRRSKMIITETSYGLNYIIFLY*SEFQTRKETITFIEIPFR*EASFSEMDSIRQIRLG 1243
            VD R+SK      S+G +YI++L     +T +E  +  +  +  EA  SEMDSI      
Sbjct: 729  VDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTW 788

Query: 1244 SLLVYL*GVRPYD*MSL*EE------T*GRWNCGKI*G*LXXXXXXXXXXXXISSYSALT 1405
             ++    G +P     + ++      T  ++    +                  +YS + 
Sbjct: 789  EVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV----AKGYTQKEGEDFFDTYSPVA 844

Query: 1406 RISSFEMLIYFAAINNLEIHQVDVKITF*NCELDK*IYIEQPEDFVVKGYENKFCKLNKY 1585
            R+++  +L+  AA + L +HQ+DVK  F N EL++ IY++QP+ +V++G E   CKL K 
Sbjct: 845  RLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKS 904

Query: 1586 LYDSK*ARK**HE 1624
            LY  K A K  HE
Sbjct: 905  LYGLKQAPKQWHE 917



 Score = 65.5 bits (158), Expect(4) = 9e-46
 Identities = 49/141 (34%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
 Frame = +3

Query: 1659 VNESDKYIYK*LVKDACVIVCLYVDDMLIPDTNIDVINSTKTCTXXXXXXXXXXP----F 1826
            VNE+DK +Y        VI+CLYVDD+LI  T+++VI   K                   
Sbjct: 930  VNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVIL 989

Query: 1827 *CNLRDED*KIIKHL*S*SFSLC*IVLKRYNQCDCKPASTPYDYSCILKKNKGSGVS*LE 2006
               L+  D   I  + S        VL R+   DCKPA TPYD S +L+KN+      L 
Sbjct: 990  NIKLQRGDEGGITLVQSHYVDK---VLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLR 1046

Query: 2007 YSRVIGCLMNFMNCKSPEIAY 2069
            YS++IG LM   +   P+I++
Sbjct: 1047 YSQIIGSLMYLASATRPDISF 1067



 Score = 40.4 bits (93), Expect(4) = 9e-46
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 22/111 (19%)
 Frame = +3

Query: 705 ITQNLWEEVVL*FCYILNRVTFKGWDKNSYDY---EKIYNLFMHTSKCGG---------- 845
           +++  W E VL  C++LN++  K  +   ++    +K+   ++ T  C            
Sbjct: 579 LSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKR 638

Query: 846 ---------V*IRFLEYPTAYRFLVVCSDFSDFGVKVITESRDAEFFEHVY 971
                    V + +  +   YRFL+V S   D  V  I ESRDA FFE+ +
Sbjct: 639 KLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHVGTILESRDATFFENEF 689


>gb|ABA98885.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1452

 Score = 73.9 bits (180), Expect(4) = 1e-45
 Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
 Frame = +1

Query: 214  NYKSMHKLASIDYVPKFSLDFDHKSEFYVESKYAIKPFSKNVQSNSKPLELIQLGLVEMS 393
            N+  M +LA++  +PKF+L    K    V+SK   KP   +   N  PLEL+   L EM+
Sbjct: 595  NFGCMMRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMN 654

Query: 394  STRTKVVKGS-L*LS*MIVRGTLLYN*LGVRMIP*KP*E------YKLEIESEVYVTTKL 552
               TK  K   + L     R   +Y      ++  K         YK E+E+++    K 
Sbjct: 655  GVLTKGGKKYFMTLIDDCTRFCYVY------LLKTKDEALHYFKIYKAEVENQLERKIKR 708

Query: 553  VRSKHDGKYEIHMLN------GIIHEIASPYSP*SNGIVERKSRIIKEMIYAML 696
            +RS   G+Y  +         GIIHE+  PYSP SNG+ ERK+R + EM+ AML
Sbjct: 709  LRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAML 762



 Score = 70.5 bits (171), Expect(4) = 1e-45
 Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 6/193 (3%)
 Frame = +2

Query: 1064 VDPRRSKMIITETSYGLNYIIFLY*SEFQTRKETITFIEIPFR*EASFSEMDSIRQIRLG 1243
            VD R+SK      S+G +YI++L     +T +E     +  +  EA  SEMDSI      
Sbjct: 917  VDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYLSPDADYWKEAVRSEMDSIMSNGTW 976

Query: 1244 SLLVYL*GVRPYD*MSL*EE------T*GRWNCGKI*G*LXXXXXXXXXXXXISSYSALT 1405
             ++    G +P     + ++      T  ++    +                  +YS + 
Sbjct: 977  EVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV----AKGYTQKEGEDFFDTYSPVA 1032

Query: 1406 RISSFEMLIYFAAINNLEIHQVDVKITF*NCELDK*IYIEQPEDFVVKGYENKFCKLNKY 1585
            R+++  +L+  AA + L +HQ+DVK  F N EL++ IY++QP+ +V++G E   CKL K 
Sbjct: 1033 RLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKS 1092

Query: 1586 LYDSK*ARK**HE 1624
            LY  K A K  HE
Sbjct: 1093 LYGLKQAPKQWHE 1105



 Score = 70.5 bits (171), Expect(4) = 1e-45
 Identities = 49/137 (35%), Positives = 68/137 (49%)
 Frame = +3

Query: 1659 VNESDKYIYK*LVKDACVIVCLYVDDMLIPDTNIDVINSTKTCTXXXXXXXXXXPF*CNL 1838
            VNE+DK +Y        VI+CLYVDD+LI  T+++VI   K                  L
Sbjct: 1118 VNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDYLSKSDLGEADVILNIKL 1177

Query: 1839 RDED*KIIKHL*S*SFSLC*IVLKRYNQCDCKPASTPYDYSCILKKNKGSGVS*LEYSRV 2018
            +  D   I  + S        VL R+   DCKPA TPYD S +L+KN+      L YS++
Sbjct: 1178 QRGDEGGITLVQSHYVDK---VLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQI 1234

Query: 2019 IGCLMNFMNCKSPEIAY 2069
            IG LM   +   P+I++
Sbjct: 1235 IGSLMYLASATRPDISF 1251



 Score = 38.9 bits (89), Expect(4) = 1e-45
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 22/111 (19%)
 Frame = +3

Query: 705  ITQNLWEEVVL*FCYILNRVT--------FKGWDKNSYDYE---------KIYNLFMHTS 833
            +++  W E VL  C++LN++         F+ W++   +           K+    +   
Sbjct: 767  LSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIVKKR 826

Query: 834  KCGG-----V*IRFLEYPTAYRFLVVCSDFSDFGVKVITESRDAEFFEHVY 971
            K G      V + +  +   YRFL+V S   D     I ESRDA FFE+ +
Sbjct: 827  KLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHAGTIFESRDATFFENEF 877


>gb|ABA99813.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1448

 Score = 73.9 bits (180), Expect(4) = 1e-45
 Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
 Frame = +1

Query: 214  NYKSMHKLASIDYVPKFSLDFDHKSEFYVESKYAIKPFSKNVQSNSKPLELIQLGLVEMS 393
            N+  M +LA++  +PKF+L    K    V+SK   KP   +   N  PLEL+   L EM+
Sbjct: 587  NFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMN 646

Query: 394  STRTKVVKGS-L*LS*MIVRGTLLYN*LGVRMIP*KP*E------YKLEIESEVYVTTKL 552
               TK  K   + L     R   +Y      ++  K         YK E+E+++    K 
Sbjct: 647  GVLTKGGKKYFMTLIDDCTRFCYVY------LLKTKDEALHYFKIYKAEVENQLERKIKR 700

Query: 553  VRSKHDGKYEIHMLN------GIIHEIASPYSP*SNGIVERKSRIIKEMIYAML 696
            +RS   G+Y  +         GIIHE+  PYSP SNG+ ERK+R + EM+ AML
Sbjct: 701  LRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAML 754



 Score = 73.2 bits (178), Expect(4) = 1e-45
 Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 6/193 (3%)
 Frame = +2

Query: 1064 VDPRRSKMIITETSYGLNYIIFLY*SEFQTRKETITFIEIPFR*EASFSEMDSIRQIRLG 1243
            VD R+SK      S+G +YI++L     +T +E  + ++  +  EA  SEMDSI      
Sbjct: 909  VDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSLDADYWKEAVRSEMDSIMSNGTW 968

Query: 1244 SLLVYL*GVRPYD*MSL*EE------T*GRWNCGKI*G*LXXXXXXXXXXXXISSYSALT 1405
             ++    G +P     + ++      T  ++    +                  +YS + 
Sbjct: 969  EVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV----AKGYTQKEGEDFFDTYSPVA 1024

Query: 1406 RISSFEMLIYFAAINNLEIHQVDVKITF*NCELDK*IYIEQPEDFVVKGYENKFCKLNKY 1585
            R+++  +L+  AA + L +HQ+DVK  F N EL++ IY++QP+ +V++G E   CKL K 
Sbjct: 1025 RLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKS 1084

Query: 1586 LYDSK*ARK**HE 1624
            LY  K A K  HE
Sbjct: 1085 LYGLKQAPKQWHE 1097



 Score = 66.2 bits (160), Expect(4) = 1e-45
 Identities = 49/141 (34%), Positives = 69/141 (48%), Gaps = 4/141 (2%)
 Frame = +3

Query: 1659 VNESDKYIYK*LVKDACVIVCLYVDDMLIPDTNIDVINSTKTCTXXXXXXXXXXP----F 1826
            VNE+DK +Y        VI+CLYV+D+LI  T+++VI   K                   
Sbjct: 1110 VNEADKCVYYRYGGGEGVILCLYVNDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVIL 1169

Query: 1827 *CNLRDED*KIIKHL*S*SFSLC*IVLKRYNQCDCKPASTPYDYSCILKKNKGSGVS*LE 2006
               L+ ED   I  + S        VL R+   DCKPA TPYD S +L+KN+      L 
Sbjct: 1170 NIKLQREDEDGITLVQSHYVDK---VLSRFGYSDCKPAPTPYDPSVLLRKNQRIARDQLR 1226

Query: 2007 YSRVIGCLMNFMNCKSPEIAY 2069
            YS++IG LM   +   P+I++
Sbjct: 1227 YSQIIGSLMYLASATRPDISF 1247



 Score = 40.4 bits (93), Expect(4) = 1e-45
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 24/113 (21%)
 Frame = +3

Query: 705  ITQNLWEEVVL*FCYILNRVT--------FKGWDKNSYDYE----------------KIY 812
            +++  W E VL  C++LN++         F+ W++   +                  K +
Sbjct: 759  LSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKW 818

Query: 813  NLFMHTSKCGGV*IRFLEYPTAYRFLVVCSDFSDFGVKVITESRDAEFFEHVY 971
             L   T  C  V + +  +   YRFL+V S   D     I ESRDA FFE+ +
Sbjct: 819  KLGPKTVDC--VFLGYAIHSVGYRFLIVNSGVPDMHAGTILESRDATFFENEF 869


>gb|AAP54390.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1479

 Score = 74.3 bits (181), Expect(4) = 5e-45
 Identities = 60/174 (34%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
 Frame = +1

Query: 214  NYKSMHKLASIDYVPKFSLDFDHKSEFYVESKYAIKPFSKNVQSNSKPLELIQLGLVEMS 393
            N+  M +LA++  +PKF+L    K    V+SK   KP   +   N  PLELI   L EM+
Sbjct: 618  NFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELIHSDLCEMN 677

Query: 394  STRTKVVKGS-L*LS*MIVRGTLLYN*LGVRMIP*KP*E------YKLEIESEVYVTTKL 552
               TK  K   + L     R   +Y      ++  K         YK E+E+++    K 
Sbjct: 678  GVLTKGGKKYFMTLIDDCTRFCYVY------LLKTKDEALHFFKIYKAEVENQLERKIKR 731

Query: 553  VRSKHDGKYEIHMLN------GIIHEIASPYSP*SNGIVERKSRIIKEMIYAML 696
            +RS   G+Y  +         GIIHE+  PYSP SNG+ ERK+R + EM+ AML
Sbjct: 732  LRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAML 785



 Score = 71.6 bits (174), Expect(4) = 5e-45
 Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 6/193 (3%)
 Frame = +2

Query: 1064 VDPRRSKMIITETSYGLNYIIFLY*SEFQTRKETITFIEIPFR*EASFSEMDSIRQIRLG 1243
            VD R+SK      S+G +YI++L     +T +E  +  +  +  EA  SEMDSI      
Sbjct: 940  VDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVCSEMDSIMSNGTW 999

Query: 1244 SLLVYL*GVRPYD*MSL*EE------T*GRWNCGKI*G*LXXXXXXXXXXXXISSYSALT 1405
             ++    G +P     + ++      T  ++    +                  +YS + 
Sbjct: 1000 EVVERPYGCKPIGCKWVFKKKLRPDGTIEKYKARLV----AKGYTQKEGEDFFDTYSPVA 1055

Query: 1406 RISSFEMLIYFAAINNLEIHQVDVKITF*NCELDK*IYIEQPEDFVVKGYENKFCKLNKY 1585
            R+++  +L+  AA + L +HQ+DVK  F N EL++ IY++QP+ +V++G E   CKL K 
Sbjct: 1056 RLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKS 1115

Query: 1586 LYDSK*ARK**HE 1624
            LY  K A K  HE
Sbjct: 1116 LYGLKQAPKQWHE 1128



 Score = 65.5 bits (158), Expect(4) = 5e-45
 Identities = 49/141 (34%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
 Frame = +3

Query: 1659 VNESDKYIYK*LVKDACVIVCLYVDDMLIPDTNIDVINSTKTCTXXXXXXXXXXP----F 1826
            VNE+DK +Y        VI+CLYVDD+LI  T+++VI   K                   
Sbjct: 1141 VNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVIL 1200

Query: 1827 *CNLRDED*KIIKHL*S*SFSLC*IVLKRYNQCDCKPASTPYDYSCILKKNKGSGVS*LE 2006
               L+  D   I  + S        VL R+   DCKPA TPYD S +L+KN+      L 
Sbjct: 1201 NIKLQRGDEGGITLVQSHYVDK---VLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLR 1257

Query: 2007 YSRVIGCLMNFMNCKSPEIAY 2069
            YS++IG LM   +   P+I++
Sbjct: 1258 YSQIIGSLMYLASATRPDISF 1278



 Score = 40.4 bits (93), Expect(4) = 5e-45
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 22/111 (19%)
 Frame = +3

Query: 705  ITQNLWEEVVL*FCYILNRVTFKGWDKNSYDY---EKIYNLFMHTSKCGG---------- 845
            +++  W E VL  C++LN++  K  +   ++    +K+   ++ T  C            
Sbjct: 790  LSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKR 849

Query: 846  ---------V*IRFLEYPTAYRFLVVCSDFSDFGVKVITESRDAEFFEHVY 971
                     V + +  +   YRFL+V S   D  V  I ESRDA FFE+ +
Sbjct: 850  KLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHVGTILESRDATFFENEF 900


>gb|AAS07202.1| putative integrase [Oryza sativa Japonica Group]
            gi|108708916|gb|ABF96711.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1456

 Score = 73.2 bits (178), Expect(4) = 5e-45
 Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 6/193 (3%)
 Frame = +2

Query: 1064 VDPRRSKMIITETSYGLNYIIFLY*SEFQTRKETITFIEIPFR*EASFSEMDSIRQIRLG 1243
            VD R+SK      S+G +YI++L     +T +E  +  +  +  EA  SEMDSI      
Sbjct: 917  VDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTW 976

Query: 1244 SLLVYL*GVRPYD*MSL*EE------T*GRWNCGKI*G*LXXXXXXXXXXXXISSYSALT 1405
             ++    G +P     + ++      T  ++    +                  +YS + 
Sbjct: 977  EVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV----AKGYTQKEGEDFFDTYSPVA 1032

Query: 1406 RISSFEMLIYFAAINNLEIHQVDVKITF*NCELDK*IYIEQPEDFVVKGYENKFCKLNKY 1585
            R+++  +L+  AA + L +HQ+DVKI F N EL++ IY++QP+ +V++G E   CKL K 
Sbjct: 1033 RLTTIRVLLALAASHGLLVHQMDVKIAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKS 1092

Query: 1586 LYDSK*ARK**HE 1624
            LY  K A K  HE
Sbjct: 1093 LYGLKQAPKQWHE 1105



 Score = 72.0 bits (175), Expect(4) = 5e-45
 Identities = 58/174 (33%), Positives = 84/174 (48%), Gaps = 13/174 (7%)
 Frame = +1

Query: 214  NYKSMHKLASIDYVPKFSLDFDHKSEFYVESKYAIKPFSKNVQSNSKPLELIQLGLVEMS 393
            N+  M +LA++  +PKF+L    K    V+SK   KP   +   N  PLEL+   L EM+
Sbjct: 595  NFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMN 654

Query: 394  STRTKVVKGS-L*LS*MIVRGTLLYN*LGVRMIP*KP*E------YKLEIESEVYVTTKL 552
               T   K   + L     R   +Y      ++  K         YK E+E+++    K 
Sbjct: 655  GVLTNGGKKYFMTLIDDCTRFCYVY------LLKTKDEALHYFKIYKAEVENQLERKIKR 708

Query: 553  VRSKHDGKYEIHMLN------GIIHEIASPYSP*SNGIVERKSRIIKEMIYAML 696
            +RS   G+Y  +         GIIHE+  PYSP SNG+ ERK+R + EM+ AML
Sbjct: 709  LRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAML 762



 Score = 67.8 bits (164), Expect(4) = 5e-45
 Identities = 50/141 (35%), Positives = 69/141 (48%), Gaps = 4/141 (2%)
 Frame = +3

Query: 1659 VNESDKYIYK*LVKDACVIVCLYVDDMLIPDTNIDVINSTKTCTXXXXXXXXXXP----F 1826
            VNE+DK +Y        VI+CLYVDD+LI  T+++VI   K                   
Sbjct: 1118 VNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVIL 1177

Query: 1827 *CNLRDED*KIIKHL*S*SFSLC*IVLKRYNQCDCKPASTPYDYSCILKKNKGSGVS*LE 2006
              NL+  D   I  + S        VL R+   DCKPA TPYD S +L+KN+      L 
Sbjct: 1178 NINLQRGDEGGITLVQSHYVDK---VLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLR 1234

Query: 2007 YSRVIGCLMNFMNCKSPEIAY 2069
            YS++IG LM   +   P+I++
Sbjct: 1235 YSQIIGSLMYLASATRPDISF 1255



 Score = 38.9 bits (89), Expect(4) = 5e-45
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 22/111 (19%)
 Frame = +3

Query: 705  ITQNLWEEVVL*FCYILNRVTFKGWDKNSYDY---EKIYNLFMHTSKCGG---------- 845
            +++  W E VL  C++LN++  K  +   ++    +K+   ++ T  C            
Sbjct: 767  LSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKR 826

Query: 846  ---------V*IRFLEYPTAYRFLVVCSDFSDFGVKVITESRDAEFFEHVY 971
                     V + +  +   YRFL+V S   D     I ESRDA FFE+ +
Sbjct: 827  KLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHAGTILESRDATFFENEF 877


>gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1408

 Score = 74.3 bits (181), Expect(4) = 5e-45
 Identities = 60/174 (34%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
 Frame = +1

Query: 214  NYKSMHKLASIDYVPKFSLDFDHKSEFYVESKYAIKPFSKNVQSNSKPLELIQLGLVEMS 393
            N+  M +LA++  +PKF+L    K    V+SK   KP   +   N  PLELI   L EM+
Sbjct: 547  NFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELIHSDLCEMN 606

Query: 394  STRTKVVKGS-L*LS*MIVRGTLLYN*LGVRMIP*KP*E------YKLEIESEVYVTTKL 552
               TK  K   + L     R   +Y      ++  K         YK E+E+++    K 
Sbjct: 607  GVLTKGGKKYFMTLIDDCTRFCYVY------LLKTKDEALHFFKIYKAEVENQLERKIKR 660

Query: 553  VRSKHDGKYEIHMLN------GIIHEIASPYSP*SNGIVERKSRIIKEMIYAML 696
            +RS   G+Y  +         GIIHE+  PYSP SNG+ ERK+R + EM+ AML
Sbjct: 661  LRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAML 714



 Score = 71.6 bits (174), Expect(4) = 5e-45
 Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 6/193 (3%)
 Frame = +2

Query: 1064 VDPRRSKMIITETSYGLNYIIFLY*SEFQTRKETITFIEIPFR*EASFSEMDSIRQIRLG 1243
            VD R+SK      S+G +YI++L     +T +E  +  +  +  EA  SEMDSI      
Sbjct: 869  VDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVCSEMDSIMSNGTW 928

Query: 1244 SLLVYL*GVRPYD*MSL*EE------T*GRWNCGKI*G*LXXXXXXXXXXXXISSYSALT 1405
             ++    G +P     + ++      T  ++    +                  +YS + 
Sbjct: 929  EVVERPYGCKPIGCKWVFKKKLRPDGTIEKYKARLV----AKGYTQKEGEDFFDTYSPVA 984

Query: 1406 RISSFEMLIYFAAINNLEIHQVDVKITF*NCELDK*IYIEQPEDFVVKGYENKFCKLNKY 1585
            R+++  +L+  AA + L +HQ+DVK  F N EL++ IY++QP+ +V++G E   CKL K 
Sbjct: 985  RLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKS 1044

Query: 1586 LYDSK*ARK**HE 1624
            LY  K A K  HE
Sbjct: 1045 LYGLKQAPKQWHE 1057



 Score = 65.5 bits (158), Expect(4) = 5e-45
 Identities = 49/141 (34%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
 Frame = +3

Query: 1659 VNESDKYIYK*LVKDACVIVCLYVDDMLIPDTNIDVINSTKTCTXXXXXXXXXXP----F 1826
            VNE+DK +Y        VI+CLYVDD+LI  T+++VI   K                   
Sbjct: 1070 VNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVIL 1129

Query: 1827 *CNLRDED*KIIKHL*S*SFSLC*IVLKRYNQCDCKPASTPYDYSCILKKNKGSGVS*LE 2006
               L+  D   I  + S        VL R+   DCKPA TPYD S +L+KN+      L 
Sbjct: 1130 NIKLQRGDEGGITLVQSHYVDK---VLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLR 1186

Query: 2007 YSRVIGCLMNFMNCKSPEIAY 2069
            YS++IG LM   +   P+I++
Sbjct: 1187 YSQIIGSLMYLASATRPDISF 1207



 Score = 40.4 bits (93), Expect(4) = 5e-45
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 22/111 (19%)
 Frame = +3

Query: 705  ITQNLWEEVVL*FCYILNRVTFKGWDKNSYDY---EKIYNLFMHTSKCGG---------- 845
            +++  W E VL  C++LN++  K  +   ++    +K+   ++ T  C            
Sbjct: 719  LSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKR 778

Query: 846  ---------V*IRFLEYPTAYRFLVVCSDFSDFGVKVITESRDAEFFEHVY 971
                     V + +  +   YRFL+V S   D  V  I ESRDA FFE+ +
Sbjct: 779  KLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHVGTILESRDATFFENEF 829


>gb|ABA96132.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1357

 Score = 73.9 bits (180), Expect(4) = 5e-45
 Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
 Frame = +1

Query: 214 NYKSMHKLASIDYVPKFSLDFDHKSEFYVESKYAIKPFSKNVQSNSKPLELIQLGLVEMS 393
           N+  M +LA++  +PKF+L    K    V+SK   KP   +   N  PLEL+   L EM+
Sbjct: 496 NFGCMMRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMN 555

Query: 394 STRTKVVKGS-L*LS*MIVRGTLLYN*LGVRMIP*KP*E------YKLEIESEVYVTTKL 552
              TK  K   + L     R   +Y      ++  K         YK E+E+++    K 
Sbjct: 556 GVLTKGGKKYFMTLIDDCTRFCYVY------LLKTKDEALHYFKIYKAEVENQLERKIKR 609

Query: 553 VRSKHDGKYEIHMLN------GIIHEIASPYSP*SNGIVERKSRIIKEMIYAML 696
           +RS   G+Y  +         GIIHE+  PYSP SNG+ ERK+R + EM+ AML
Sbjct: 610 LRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAML 663



 Score = 71.2 bits (173), Expect(4) = 5e-45
 Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 6/193 (3%)
 Frame = +2

Query: 1064 VDPRRSKMIITETSYGLNYIIFLY*SEFQTRKETITFIEIPFR*EASFSEMDSIRQIRLG 1243
            VD R+SK      S+G +YI++L     +T +E  +  +  +  EA  SEMDSI      
Sbjct: 818  VDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTW 877

Query: 1244 SLLVYL*GVRPYD*MSL*EE------T*GRWNCGKI*G*LXXXXXXXXXXXXISSYSALT 1405
             ++    G +P     + ++      T  ++    +                  +YS + 
Sbjct: 878  EVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV----AKGYTQKEGEDFFDTYSPVA 933

Query: 1406 RISSFEMLIYFAAINNLEIHQVDVKITF*NCELDK*IYIEQPEDFVVKGYENKFCKLNKY 1585
            R+++  +L+  AA + L +HQ+DVK  F N EL++ IY++QP+ +V++G E   CKL K 
Sbjct: 934  RLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKS 993

Query: 1586 LYDSK*ARK**HE 1624
            LY  K A K  HE
Sbjct: 994  LYGLKQAPKQWHE 1006



 Score = 65.5 bits (158), Expect(4) = 5e-45
 Identities = 49/141 (34%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
 Frame = +3

Query: 1659 VNESDKYIYK*LVKDACVIVCLYVDDMLIPDTNIDVINSTKTCTXXXXXXXXXXP----F 1826
            VNE+DK +Y        VI+CLYVDD+LI  T+++VI   K                   
Sbjct: 1019 VNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVIL 1078

Query: 1827 *CNLRDED*KIIKHL*S*SFSLC*IVLKRYNQCDCKPASTPYDYSCILKKNKGSGVS*LE 2006
               L+  D   I  + S        VL R+   DCKPA TPYD S +L+KN+      L 
Sbjct: 1079 NIKLQRGDEGGITLVQSHYVDK---VLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLR 1135

Query: 2007 YSRVIGCLMNFMNCKSPEIAY 2069
            YS++IG LM   +   P+I++
Sbjct: 1136 YSQIIGSLMYLASATRPDISF 1156



 Score = 41.2 bits (95), Expect(4) = 5e-45
 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 24/113 (21%)
 Frame = +3

Query: 705  ITQNLWEEVVL*FCYILNRVT--------FKGWDKNSYDY----------------EKIY 812
            +++  W E VL  C++LN++         F+ W++   +                 +K  
Sbjct: 668  LSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIDKKR 727

Query: 813  NLFMHTSKCGGV*IRFLEYPTAYRFLVVCSDFSDFGVKVITESRDAEFFEHVY 971
             L   T  C  V + +  Y   YRFL+V S   D     I ESRDA FFE+ +
Sbjct: 728  KLGPKTVDC--VFLGYAIYSVGYRFLIVNSGVPDMHAGTIFESRDATFFENEF 778


>gb|AAL31653.1|AC079179_8 Putative polyprotein from transposon TNT [Oryza sativa]
           gi|31429907|gb|AAP51896.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1342

 Score = 73.9 bits (180), Expect(4) = 6e-45
 Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
 Frame = +1

Query: 214 NYKSMHKLASIDYVPKFSLDFDHKSEFYVESKYAIKPFSKNVQSNSKPLELIQLGLVEMS 393
           N+  M +LA++  +PKF+L    K    V+SK   KP   +   N  PLEL+   L EM+
Sbjct: 481 NFGCMMRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMN 540

Query: 394 STRTKVVKGS-L*LS*MIVRGTLLYN*LGVRMIP*KP*E------YKLEIESEVYVTTKL 552
              TK  K   + L     R   +Y      ++  K         YK E+E+++    K 
Sbjct: 541 GVLTKGGKKYFMTLIDDCTRFCYVY------LLKTKDEALHYFKIYKAEVENQLERKIKR 594

Query: 553 VRSKHDGKYEIHMLN------GIIHEIASPYSP*SNGIVERKSRIIKEMIYAML 696
           +RS   G+Y  +         GIIHE+  PYSP SNG+ ERK+R + EM+ AML
Sbjct: 595 LRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAML 648



 Score = 71.2 bits (173), Expect(4) = 6e-45
 Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 6/193 (3%)
 Frame = +2

Query: 1064 VDPRRSKMIITETSYGLNYIIFLY*SEFQTRKETITFIEIPFR*EASFSEMDSIRQIRLG 1243
            VD R+SK      S+G +YI++L     +T +E  +  +  +  EA  SEMDSI      
Sbjct: 803  VDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTW 862

Query: 1244 SLLVYL*GVRPYD*MSL*EE------T*GRWNCGKI*G*LXXXXXXXXXXXXISSYSALT 1405
             ++    G +P     + ++      T  ++    +                  +YS + 
Sbjct: 863  EVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV----AKGYTQKEGEDLFDTYSPVA 918

Query: 1406 RISSFEMLIYFAAINNLEIHQVDVKITF*NCELDK*IYIEQPEDFVVKGYENKFCKLNKY 1585
            R+++  +L+  AA + L +HQ+DVK  F N EL++ IY++QP+ +V++G E   CKL K 
Sbjct: 919  RLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKS 978

Query: 1586 LYDSK*ARK**HE 1624
            LY  K A K  HE
Sbjct: 979  LYGLKQAPKQWHE 991



 Score = 67.4 bits (163), Expect(4) = 6e-45
 Identities = 50/143 (34%), Positives = 67/143 (46%), Gaps = 6/143 (4%)
 Frame = +3

Query: 1659 VNESDKYIYK*LVKDACVIVCLYVDDMLIPDTNIDVINSTKTCTXXXXXXXXXXPF*CNL 1838
            VNE+DK +Y        VI+CLYVDD+LI  T+++VI   K                  L
Sbjct: 1004 VNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVIL 1063

Query: 1839 R------DED*KIIKHL*S*SFSLC*IVLKRYNQCDCKPASTPYDYSCILKKNKGSGVS* 2000
                   DED   +             VL R+   DCKPA TPYD S +L+KN+  G   
Sbjct: 1064 NIKLQRGDEDGITLVQS-----HYVDKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIGRDQ 1118

Query: 2001 LEYSRVIGCLMNFMNCKSPEIAY 2069
            L YS++IG LM   +   P I++
Sbjct: 1119 LRYSQIIGSLMYLASATRPGISF 1141



 Score = 38.9 bits (89), Expect(4) = 6e-45
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 22/111 (19%)
 Frame = +3

Query: 705 ITQNLWEEVVL*FCYILNRVT--------FKGWDKNSYDYE---------KIYNLFMHTS 833
           +++  W E VL  C++LN++         F+ W++   +           K+    +   
Sbjct: 653 LSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIVKKR 712

Query: 834 KCGG-----V*IRFLEYPTAYRFLVVCSDFSDFGVKVITESRDAEFFEHVY 971
           K G      V + +  +   YRFL+V S   D     I ESRDA FFE+ +
Sbjct: 713 KLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHAGTIFESRDATFFENEF 763


>gb|AAK39592.1|AC025296_27 putative retrotransposon polyprotein [Oryza sativa Japonica Group]
          Length = 804

 Score = 72.8 bits (177), Expect(5) = 7e-45
 Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 6/193 (3%)
 Frame = +2

Query: 1064 VDPRRSKMIITETSYGLNYIIFLY*SEFQTRKETITFIEIPFR*EASFSEMDSIRQIRLG 1243
            VD R+SK      S+G +YI++L     +T +E  +  +  +  EA  SEMDSI      
Sbjct: 265  VDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTW 324

Query: 1244 SLLVYL*GVRPYD*MSL*EE------T*GRWNCGKI*G*LXXXXXXXXXXXXISSYSALT 1405
             ++ +  G +P     + ++      T  ++    +                  +YS + 
Sbjct: 325  EVVEHPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV----AKGYTQKEGEDFFDTYSPVA 380

Query: 1406 RISSFEMLIYFAAINNLEIHQVDVKITF*NCELDK*IYIEQPEDFVVKGYENKFCKLNKY 1585
            R+++  +L+  AA + L +HQ+DVK  F N EL++ IY++QP+ +V++G E   CKL K 
Sbjct: 381  RLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKS 440

Query: 1586 LYDSK*ARK**HE 1624
            LY  K A K  HE
Sbjct: 441  LYGLKQAPKQWHE 453



 Score = 64.3 bits (155), Expect(5) = 7e-45
 Identities = 48/141 (34%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
 Frame = +3

Query: 1659 VNESDKYIYK*LVKDACVIVCLYVDDMLIPDTNIDVINSTKTCTXXXXXXXXXXP----F 1826
            VNE+DK +Y        VI+CLYVDD+LI  T+++VI   K                   
Sbjct: 466  VNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVIL 525

Query: 1827 *CNLRDED*KIIKHL*S*SFSLC*IVLKRYNQCDCKPASTPYDYSCILKKNKGSGVS*LE 2006
               L+  D   I  + S        VL R+   DCKPA TPYD + +L+KN+      L 
Sbjct: 526  NIKLQRGDEGGITLVQSHYVDK---VLSRFGYSDCKPAPTPYDPNVLLRKNRRIARDQLR 582

Query: 2007 YSRVIGCLMNFMNCKSPEIAY 2069
            YS++IG LM   +   P+I++
Sbjct: 583  YSQIIGSLMYLASATRPDISF 603



 Score = 56.2 bits (134), Expect(5) = 7e-45
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 6/69 (8%)
 Frame = +1

Query: 508 YKLEIESEVYVTTKLVRSKHDGKYEIHMLN------GIIHEIASPYSP*SNGIVERKSRI 669
           YK E+E+++    K +RS   G+Y  +         GIIHE++ PYSP SNG+ ERK+R 
Sbjct: 42  YKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMSPPYSPQSNGVAERKNRT 101

Query: 670 IKEMIYAML 696
           + EM+ AML
Sbjct: 102 LTEMVNAML 110



 Score = 38.9 bits (89), Expect(5) = 7e-45
 Identities = 15/34 (44%), Positives = 25/34 (73%)
 Frame = +3

Query: 408 GGKR*FVTFIDDCTRYSLI*LIRGKDDSLEALRV 509
           GGK+ F+T IDDCTR+  + L++ KD++L   ++
Sbjct: 8   GGKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKI 41



 Score = 38.9 bits (89), Expect(5) = 7e-45
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 22/111 (19%)
 Frame = +3

Query: 705 ITQNLWEEVVL*FCYILNRVTFKGWDKNSYDY---EKIYNLFMHTSKCGG---------- 845
           +++  W E VL  C++LN++  K  +   ++    +K+   ++ T  C            
Sbjct: 115 LSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKR 174

Query: 846 ---------V*IRFLEYPTAYRFLVVCSDFSDFGVKVITESRDAEFFEHVY 971
                    V + +  +   YRFL+V S   D     I ESRDA FFE+ +
Sbjct: 175 KLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHAGTILESRDATFFENEF 225


>gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1413

 Score = 73.9 bits (180), Expect(4) = 8e-45
 Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
 Frame = +1

Query: 214  NYKSMHKLASIDYVPKFSLDFDHKSEFYVESKYAIKPFSKNVQSNSKPLELIQLGLVEMS 393
            N+  M +LA++  +PKF+L    K    V+SK   KP   +   N  PLEL+   L EM+
Sbjct: 552  NFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMN 611

Query: 394  STRTKVVKGS-L*LS*MIVRGTLLYN*LGVRMIP*KP*E------YKLEIESEVYVTTKL 552
               TK  K   + L     R   +Y      ++  K         YK E+E+++    K 
Sbjct: 612  GVLTKGGKKYFMTLIDDCTRFCYVY------LLKTKDEALHFFKIYKAEVENQLERKIKR 665

Query: 553  VRSKHDGKYEIHMLN------GIIHEIASPYSP*SNGIVERKSRIIKEMIYAML 696
            +RS   G+Y  +         GIIHE+  PYSP SNG+ ERK+R + EM+ AML
Sbjct: 666  LRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAML 719



 Score = 71.2 bits (173), Expect(4) = 8e-45
 Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 6/193 (3%)
 Frame = +2

Query: 1064 VDPRRSKMIITETSYGLNYIIFLY*SEFQTRKETITFIEIPFR*EASFSEMDSIRQIRLG 1243
            VD R+SK      S+G +YI++L     +T +E  +  +  +  EA  SEMDSI      
Sbjct: 874  VDTRKSKRQRVVKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTW 933

Query: 1244 SLLVYL*GVRPYD*MSL*EE------T*GRWNCGKI*G*LXXXXXXXXXXXXISSYSALT 1405
             ++    G +P     + ++      T  ++    +                  +YS + 
Sbjct: 934  EIVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV----AKGYTQKEGEDFFDTYSPVA 989

Query: 1406 RISSFEMLIYFAAINNLEIHQVDVKITF*NCELDK*IYIEQPEDFVVKGYENKFCKLNKY 1585
            R+++  +L+  AA + L +HQ+DVK  F N EL++ IY++QP+ +V++G E   CKL K 
Sbjct: 990  RLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKS 1049

Query: 1586 LYDSK*ARK**HE 1624
            LY  K A K  HE
Sbjct: 1050 LYGLKQAPKQWHE 1062



 Score = 65.5 bits (158), Expect(4) = 8e-45
 Identities = 49/141 (34%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
 Frame = +3

Query: 1659 VNESDKYIYK*LVKDACVIVCLYVDDMLIPDTNIDVINSTKTCTXXXXXXXXXXP----F 1826
            VNE+DK +Y        VI+CLYVDD+LI  T+++VI   K                   
Sbjct: 1075 VNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVIL 1134

Query: 1827 *CNLRDED*KIIKHL*S*SFSLC*IVLKRYNQCDCKPASTPYDYSCILKKNKGSGVS*LE 2006
               L+  D   I  + S        VL R+   DCKPA TPYD S +L+KN+      L 
Sbjct: 1135 NIKLQRGDEGGITLVQSHYVDK---VLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLR 1191

Query: 2007 YSRVIGCLMNFMNCKSPEIAY 2069
            YS++IG LM   +   P+I++
Sbjct: 1192 YSQIIGSLMYLASATRPDISF 1212



 Score = 40.4 bits (93), Expect(4) = 8e-45
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 22/111 (19%)
 Frame = +3

Query: 705  ITQNLWEEVVL*FCYILNRVTFKGWDKNSYDY---EKIYNLFMHTSKCGG---------- 845
            +++  W E VL  C++LN++  K  +   ++    +K+   ++ T  C            
Sbjct: 724  LSKEWWGETVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKR 783

Query: 846  ---------V*IRFLEYPTAYRFLVVCSDFSDFGVKVITESRDAEFFEHVY 971
                     V + +  +   YRFL+V S   D  V  I ESRDA FFE+ +
Sbjct: 784  KLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHVGTILESRDATFFENEF 834


>gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1394

 Score = 73.9 bits (180), Expect(4) = 8e-45
 Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
 Frame = +1

Query: 214  NYKSMHKLASIDYVPKFSLDFDHKSEFYVESKYAIKPFSKNVQSNSKPLELIQLGLVEMS 393
            N+  M +LA++  +PKF+L    K    V+SK   KP   +   N  PLEL+   L EM+
Sbjct: 533  NFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMN 592

Query: 394  STRTKVVKGS-L*LS*MIVRGTLLYN*LGVRMIP*KP*E------YKLEIESEVYVTTKL 552
               TK  K   + L     R   +Y      ++  K         YK E+E+++    K 
Sbjct: 593  GVLTKGGKKYFMTLIDDCTRFCYVY------LLKTKDEALHFFKIYKAEVENQLERKIKR 646

Query: 553  VRSKHDGKYEIHMLN------GIIHEIASPYSP*SNGIVERKSRIIKEMIYAML 696
            +RS   G+Y  +         GIIHE+  PYSP SNG+ ERK+R + EM+ AML
Sbjct: 647  LRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAML 700



 Score = 71.2 bits (173), Expect(4) = 8e-45
 Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 6/193 (3%)
 Frame = +2

Query: 1064 VDPRRSKMIITETSYGLNYIIFLY*SEFQTRKETITFIEIPFR*EASFSEMDSIRQIRLG 1243
            VD R+SK      S+G +YI++L     +T +E  +  +  +  EA  SEMDSI      
Sbjct: 855  VDTRKSKRQRVVKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTW 914

Query: 1244 SLLVYL*GVRPYD*MSL*EE------T*GRWNCGKI*G*LXXXXXXXXXXXXISSYSALT 1405
             ++    G +P     + ++      T  ++    +                  +YS + 
Sbjct: 915  EIVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV----AKGYTQKEGEDFFDTYSPVA 970

Query: 1406 RISSFEMLIYFAAINNLEIHQVDVKITF*NCELDK*IYIEQPEDFVVKGYENKFCKLNKY 1585
            R+++  +L+  AA + L +HQ+DVK  F N EL++ IY++QP+ +V++G E   CKL K 
Sbjct: 971  RLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKS 1030

Query: 1586 LYDSK*ARK**HE 1624
            LY  K A K  HE
Sbjct: 1031 LYGLKQAPKQWHE 1043



 Score = 65.5 bits (158), Expect(4) = 8e-45
 Identities = 49/141 (34%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
 Frame = +3

Query: 1659 VNESDKYIYK*LVKDACVIVCLYVDDMLIPDTNIDVINSTKTCTXXXXXXXXXXP----F 1826
            VNE+DK +Y        VI+CLYVDD+LI  T+++VI   K                   
Sbjct: 1056 VNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVIL 1115

Query: 1827 *CNLRDED*KIIKHL*S*SFSLC*IVLKRYNQCDCKPASTPYDYSCILKKNKGSGVS*LE 2006
               L+  D   I  + S        VL R+   DCKPA TPYD S +L+KN+      L 
Sbjct: 1116 NIKLQRGDEGGITLVQSHYVDK---VLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLR 1172

Query: 2007 YSRVIGCLMNFMNCKSPEIAY 2069
            YS++IG LM   +   P+I++
Sbjct: 1173 YSQIIGSLMYLASATRPDISF 1193



 Score = 40.4 bits (93), Expect(4) = 8e-45
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 22/111 (19%)
 Frame = +3

Query: 705  ITQNLWEEVVL*FCYILNRVTFKGWDKNSYDY---EKIYNLFMHTSKCGG---------- 845
            +++  W E VL  C++LN++  K  +   ++    +K+   ++ T  C            
Sbjct: 705  LSKEWWGETVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKR 764

Query: 846  ---------V*IRFLEYPTAYRFLVVCSDFSDFGVKVITESRDAEFFEHVY 971
                     V + +  +   YRFL+V S   D  V  I ESRDA FFE+ +
Sbjct: 765  KLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHVGTILESRDATFFENEF 815


>emb|CAE05248.2| OSJNBb0115I09.10 [Oryza sativa Japonica Group]
          Length = 1321

 Score = 73.6 bits (179), Expect(4) = 1e-44
 Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
 Frame = +1

Query: 214 NYKSMHKLASIDYVPKFSLDFDHKSEFYVESKYAIKPFSKNVQSNSKPLELIQLGLVEMS 393
           N+  M +LA++  +PKF+L    K    V+SK   KP   +   N  PLEL+   L EM+
Sbjct: 460 NFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEVRNLAPLELVHSDLCEMN 519

Query: 394 STRTKVVKGS-L*LS*MIVRGTLLYN*LGVRMIP*KP*E------YKLEIESEVYVTTKL 552
              TK  K   + L     R   +Y      ++  K         YK E+E+++    K 
Sbjct: 520 GVLTKGGKKYFMTLIDDCTRFCYVY------LLKTKDEALHFFKIYKAEVENQLERKIKR 573

Query: 553 VRSKHDGKYEIHMLN------GIIHEIASPYSP*SNGIVERKSRIIKEMIYAML 696
           +RS   G+Y  +         GIIHE+  PYSP SNG+ ERK+R + EM+ AML
Sbjct: 574 LRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAML 627



 Score = 71.2 bits (173), Expect(4) = 1e-44
 Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 6/193 (3%)
 Frame = +2

Query: 1064 VDPRRSKMIITETSYGLNYIIFLY*SEFQTRKETITFIEIPFR*EASFSEMDSIRQIRLG 1243
            VD R+SK      S+G +YI++L     +T +E  +  +  +  EA  SEMDSI      
Sbjct: 782  VDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNDTW 841

Query: 1244 SLLVYL*GVRPYD*MSL*EE------T*GRWNCGKI*G*LXXXXXXXXXXXXISSYSALT 1405
             ++    G +P     + ++      T  ++    +                  +YS + 
Sbjct: 842  EVVERPYGCKPVGCKWVFKKKLKPDGTIEKYKARLV----AKGYTQKEGEDFFDTYSLVA 897

Query: 1406 RISSFEMLIYFAAINNLEIHQVDVKITF*NCELDK*IYIEQPEDFVVKGYENKFCKLNKY 1585
            R+++  +L+  AA + L +HQ+DVK  F N EL++ IY++QP+ +V++G E   CKL K 
Sbjct: 898  RLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKS 957

Query: 1586 LYDSK*ARK**HE 1624
            LY  K A K  HE
Sbjct: 958  LYGLKQAPKQWHE 970



 Score = 65.5 bits (158), Expect(4) = 1e-44
 Identities = 49/141 (34%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
 Frame = +3

Query: 1659 VNESDKYIYK*LVKDACVIVCLYVDDMLIPDTNIDVINSTKTCTXXXXXXXXXXP----F 1826
            VNE+DK +Y        VI+CLYVDD+LI  T+++VI   K                   
Sbjct: 983  VNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVIL 1042

Query: 1827 *CNLRDED*KIIKHL*S*SFSLC*IVLKRYNQCDCKPASTPYDYSCILKKNKGSGVS*LE 2006
               L+  D   I  + S        VL R+   DCKPA TPYD S +L+KN+      L 
Sbjct: 1043 NIKLQRGDEGGITLVQSHYVDK---VLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLR 1099

Query: 2007 YSRVIGCLMNFMNCKSPEIAY 2069
            YS++IG LM   +   P+I++
Sbjct: 1100 YSQIIGSLMYLASATRPDISF 1120



 Score = 40.4 bits (93), Expect(4) = 1e-44
 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 24/113 (21%)
 Frame = +3

Query: 705 ITQNLWEEVVL*FCYILNRVT--------FKGWDKNSYDYE----------------KIY 812
           +++  W E VL  C++LN++         F+ W++   +                  K  
Sbjct: 632 LSKEWWGEAVLTACHVLNKIPMKHKEITPFEEWERKKLNLSYLRTWGCLAKVNVPIAKRR 691

Query: 813 NLFMHTSKCGGV*IRFLEYPTAYRFLVVCSDFSDFGVKVITESRDAEFFEHVY 971
            L   T  C  V + +  +   YRFL+V S   D  V  I ESRDA FFE+ +
Sbjct: 692 KLGPKTVDC--VFLGYAIHSVGYRFLIVNSGVPDMHVGTILESRDATFFENEF 742


>gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1303

 Score = 72.8 bits (177), Expect(4) = 1e-44
 Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
 Frame = +1

Query: 214  NYKSMHKLASIDYVPKFSLDFDHKSEFYVESKYAIKPFSKNVQSNSKPLELIQLGLVEMS 393
            N+  + +LA++  +PKF+L    K    V+SK   KP   +   N  PLEL+   L EM+
Sbjct: 552  NFGCLTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMN 611

Query: 394  STRTKVVKGS-L*LS*MIVRGTLLYN*LGVRMIP*KP*E------YKLEIESEVYVTTKL 552
               TK  K   + L     R   +Y      ++  K         YK E+E+++    K 
Sbjct: 612  GVLTKGGKKYFMTLIDDCTRFCYVY------LLKTKDEALHFFKIYKAEVENQLERKIKR 665

Query: 553  VRSKHDGKYEIHMLN------GIIHEIASPYSP*SNGIVERKSRIIKEMIYAML 696
            +RS   G+Y  +         GIIHE+  PYSP SNG+ ERK+R + EM+ AML
Sbjct: 666  LRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAML 719



 Score = 71.6 bits (174), Expect(4) = 1e-44
 Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 6/193 (3%)
 Frame = +2

Query: 1064 VDPRRSKMIITETSYGLNYIIFLY*SEFQTRKETITFIEIPFR*EASFSEMDSIRQIRLG 1243
            VD R+SK      S+G +YI++L     +T +E  +  +  +  EA  SEMDSI      
Sbjct: 874  VDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTW 933

Query: 1244 SLLVYL*GVRPYD*MSL*EE------T*GRWNCGKI*G*LXXXXXXXXXXXXISSYSALT 1405
             ++    G +P     + ++      T  ++    +                  +YS + 
Sbjct: 934  EVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV----AKGYTQKEGEDFFDTYSPVA 989

Query: 1406 RISSFEMLIYFAAINNLEIHQVDVKITF*NCELDK*IYIEQPEDFVVKGYENKFCKLNKY 1585
            R+++  +L+  AA + L IHQ+DVK  F N EL++ IY++QP+ +V++G E   CKL K 
Sbjct: 990  RLTTIRVLLALAASHGLLIHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKS 1049

Query: 1586 LYDSK*ARK**HE 1624
            LY  K A K  HE
Sbjct: 1050 LYGLKQAPKQWHE 1062



 Score = 65.5 bits (158), Expect(4) = 1e-44
 Identities = 49/141 (34%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
 Frame = +3

Query: 1659 VNESDKYIYK*LVKDACVIVCLYVDDMLIPDTNIDVINSTKTCTXXXXXXXXXXP----F 1826
            VNE+DK +Y        VI+CLYVDD+LI  T+++VI   K                   
Sbjct: 1075 VNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVIL 1134

Query: 1827 *CNLRDED*KIIKHL*S*SFSLC*IVLKRYNQCDCKPASTPYDYSCILKKNKGSGVS*LE 2006
               L+  D   I  + S        VL R+   DCKPA TPYD S +L+KN+      L 
Sbjct: 1135 NIKLQRGDEGGITLVQSHYVDK---VLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLR 1191

Query: 2007 YSRVIGCLMNFMNCKSPEIAY 2069
            YS++IG LM   +   P+I++
Sbjct: 1192 YSQIIGSLMYLASATRPDISF 1212



 Score = 40.4 bits (93), Expect(4) = 1e-44
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 22/111 (19%)
 Frame = +3

Query: 705  ITQNLWEEVVL*FCYILNRVTFKGWDKNSYDY---EKIYNLFMHTSKCGG---------- 845
            +++  W E VL  C++LN++  K  +   ++    +K+   ++ T  C            
Sbjct: 724  LSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKR 783

Query: 846  ---------V*IRFLEYPTAYRFLVVCSDFSDFGVKVITESRDAEFFEHVY 971
                     V + +  +   YRFL+V S   D  V  I ESRDA FFE+ +
Sbjct: 784  KLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHVGTILESRDATFFENEF 834


>dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica Group]
          Length = 1268

 Score = 73.2 bits (178), Expect(4) = 2e-44
 Identities = 59/174 (33%), Positives = 84/174 (48%), Gaps = 13/174 (7%)
 Frame = +1

Query: 214 NYKSMHKLASIDYVPKFSLDFDHKSEFYVESKYAIKPFSKNVQSNSKPLELIQLGLVEMS 393
           N+  M +LA++  +PKF+L    K    V+SK   KP   +   N  PLEL+   L EM+
Sbjct: 407 NFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMN 466

Query: 394 STRTKVVKGS-L*LS*MIVRGTLLYN*LGVRMIP*KP*E------YKLEIESEVYVTTKL 552
              TK  K   + L     R   +Y      ++  K         YK E+E+++    K 
Sbjct: 467 GVLTKGGKKYFMTLIDDCTRFCYVY------LLKTKDEALHYFKIYKAEVENQLERKIKR 520

Query: 553 VRSKHDGKYEIHMLN------GIIHEIASPYSP*SNGIVERKSRIIKEMIYAML 696
           +RS   G+Y  +         GIIHE   PYSP SNG+ ERK+R + EM+ AML
Sbjct: 521 LRSDRGGEYFSNEFTSFCEEYGIIHERTPPYSPQSNGVAERKNRTLTEMVNAML 574



 Score = 70.1 bits (170), Expect(4) = 2e-44
 Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 6/193 (3%)
 Frame = +2

Query: 1064 VDPRRSKMIITETSYGLNYIIFLY*SEFQTRKETITFIEIPFR*EASFSEMDSIRQIRLG 1243
            V  R+SK   T  S+G +YI++L     +T +E  +  +  +  EA  SEMDSI      
Sbjct: 729  VATRKSKRQRTAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTW 788

Query: 1244 SLLVYL*GVRPYD*MSL*EE------T*GRWNCGKI*G*LXXXXXXXXXXXXISSYSALT 1405
             ++    G +P     + ++      T  ++    +                  +YS + 
Sbjct: 789  EVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV----AKGYTQKEGEDFFDTYSPVA 844

Query: 1406 RISSFEMLIYFAAINNLEIHQVDVKITF*NCELDK*IYIEQPEDFVVKGYENKFCKLNKY 1585
            R+++  +L+  AA + L +HQ+DVK  F N EL++ IY++QP+ +V++G E   CKL K 
Sbjct: 845  RLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKS 904

Query: 1586 LYDSK*ARK**HE 1624
            LY  K A K  HE
Sbjct: 905  LYGLKQAPKQWHE 917



 Score = 63.2 bits (152), Expect(4) = 2e-44
 Identities = 48/144 (33%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
 Frame = +3

Query: 1659 VNESDKYIYK*LVKDACVIVCLYVDDMLIPDTNIDVINSTKTCTXXXXXXXXXXPF*CNL 1838
            VNE+DK +Y        VI+CLYVDD+LI  T+++VI   K                  L
Sbjct: 930  VNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDFLSKSFEMKDLGVADVIL 989

Query: 1839 RDED*KIIKHL*S*SFSLC*I-------VLKRYNQCDCKPASTPYDYSCILKKNKGSGVS 1997
                   IK L      +  +       VL R+   DCK A TPYD S +L+KN+     
Sbjct: 990  N------IKLLRGDEGGITLVQSHYVDKVLSRFGYSDCKAAPTPYDPSVLLRKNRRIARD 1043

Query: 1998 *LEYSRVIGCLMNFMNCKSPEIAY 2069
             L YS++IG LM   +   P+I++
Sbjct: 1044 QLRYSQIIGSLMYLASATRPDISF 1067



 Score = 43.5 bits (101), Expect(4) = 2e-44
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 24/113 (21%)
 Frame = +3

Query: 705 ITQNLWEEVVL*FCYILNRVT--------FKGWDKNSYDYE----------------KIY 812
           +++  W E +L  C++LNR+         F+ W++   +                  K  
Sbjct: 579 LSKEWWGEAILTACHVLNRIPTKHKEVTPFEEWERKKLNLSHLRTWGCLAKVNVPIAKKR 638

Query: 813 NLFMHTSKCGGV*IRFLEYPTAYRFLVVCSDFSDFGVKVITESRDAEFFEHVY 971
            L   T  C  V + +  +   YRFL+V S   D  V  ITESRDA FFE+ +
Sbjct: 639 KLGPKTVDC--VFLGYAIHSVGYRFLIVNSGVPDMRVGTITESRDATFFENEF 689


>dbj|BAB03249.1| polyprotein [Oryza sativa]
          Length = 1268

 Score = 73.9 bits (180), Expect(4) = 2e-44
 Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
 Frame = +1

Query: 214 NYKSMHKLASIDYVPKFSLDFDHKSEFYVESKYAIKPFSKNVQSNSKPLELIQLGLVEMS 393
           N+  M +LA++  +PKF+L    K    V+SK   KP   +   N  PLEL+   L EM+
Sbjct: 407 NFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMN 466

Query: 394 STRTKVVKGS-L*LS*MIVRGTLLYN*LGVRMIP*KP*E------YKLEIESEVYVTTKL 552
              TK  K   + L     R   +Y      ++  K         YK E+E+++    K 
Sbjct: 467 GVLTKGGKKYFMTLIDDCTRFCYVY------LLKTKDEALHFFKIYKAEVENQLERKIKR 520

Query: 553 VRSKHDGKYEIHMLN------GIIHEIASPYSP*SNGIVERKSRIIKEMIYAML 696
           +RS   G+Y  +         GIIHE+  PYSP SNG+ ERK+R + EM+ AML
Sbjct: 521 LRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAML 574



 Score = 69.7 bits (169), Expect(4) = 2e-44
 Identities = 56/193 (29%), Positives = 94/193 (48%), Gaps = 6/193 (3%)
 Frame = +2

Query: 1064 VDPRRSKMIITETSYGLNYIIFLY*SEFQTRKETITFIEIPFR*EASFSEMDSIRQIRLG 1243
            VD R+SK      S+G +YI++L     +T +E  +  +  +  EA  SEMDSI      
Sbjct: 729  VDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTW 788

Query: 1244 SLLVYL*GVRPYD*MSL*EE------T*GRWNCGKI*G*LXXXXXXXXXXXXISSYSALT 1405
             ++    G +P     + ++      T  ++    +                  +YS + 
Sbjct: 789  EVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV----AKGYTQKEGEDFFDTYSPVA 844

Query: 1406 RISSFEMLIYFAAINNLEIHQVDVKITF*NCELDK*IYIEQPEDFVVKGYENKFCKLNKY 1585
            R+++  +L+  AA + L +HQ+DVK  F N EL++ IY++QP+ +V++G E   CKL K 
Sbjct: 845  RLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKS 904

Query: 1586 LYDSK*ARK**HE 1624
            LY  K A K  H+
Sbjct: 905  LYGLKQAPKQWHK 917



 Score = 65.5 bits (158), Expect(4) = 2e-44
 Identities = 49/141 (34%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
 Frame = +3

Query: 1659 VNESDKYIYK*LVKDACVIVCLYVDDMLIPDTNIDVINSTKTCTXXXXXXXXXXP----F 1826
            VNE+DK +Y        VI+CLYVDD+LI  T+++VI   K                   
Sbjct: 930  VNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVIL 989

Query: 1827 *CNLRDED*KIIKHL*S*SFSLC*IVLKRYNQCDCKPASTPYDYSCILKKNKGSGVS*LE 2006
               L+  D   I  + S        VL R+   DCKPA TPYD S +L+KN+      L 
Sbjct: 990  NIKLQRGDEGGITLVQSHYVDK---VLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLR 1046

Query: 2007 YSRVIGCLMNFMNCKSPEIAY 2069
            YS++IG LM   +   P+I++
Sbjct: 1047 YSQIIGSLMYLASATRPDISF 1067



 Score = 40.4 bits (93), Expect(4) = 2e-44
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 22/111 (19%)
 Frame = +3

Query: 705 ITQNLWEEVVL*FCYILNRVTFKGWDKNSYDY---EKIYNLFMHTSKCGG---------- 845
           +++  W E VL  C++LN++  K  +   ++    +K+   ++ T  C            
Sbjct: 579 LSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKR 638

Query: 846 ---------V*IRFLEYPTAYRFLVVCSDFSDFGVKVITESRDAEFFEHVY 971
                    V + +  +   YRFL+V S   D  V  I ESRDA FFE+ +
Sbjct: 639 KLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHVGTILESRDATFFENEF 689


>gb|AAP50927.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108708705|gb|ABF96500.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1240

 Score = 73.9 bits (180), Expect(4) = 2e-44
 Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
 Frame = +1

Query: 214 NYKSMHKLASIDYVPKFSLDFDHKSEFYVESKYAIKPFSKNVQSNSKPLELIQLGLVEMS 393
           N+  M +LA++  +PKF+L    K    V+SK   KP   +   N  PLEL+   L EM+
Sbjct: 407 NFGCMMRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMN 466

Query: 394 STRTKVVKGS-L*LS*MIVRGTLLYN*LGVRMIP*KP*E------YKLEIESEVYVTTKL 552
              TK  K   + L     R   +Y      ++  K         YK E+E+++    K 
Sbjct: 467 GVLTKGGKKYFMTLIDDCTRFCYVY------LLKTKDEALHYFKIYKAEVENQLERKIKR 520

Query: 553 VRSKHDGKYEIHMLN------GIIHEIASPYSP*SNGIVERKSRIIKEMIYAML 696
           +RS   G+Y  +         GIIHE+  PYSP SNG+ ERK+R + EM+ AML
Sbjct: 521 LRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAML 574



 Score = 71.2 bits (173), Expect(4) = 2e-44
 Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 6/193 (3%)
 Frame = +2

Query: 1064 VDPRRSKMIITETSYGLNYIIFLY*SEFQTRKETITFIEIPFR*EASFSEMDSIRQIRLG 1243
            VD R+SK      S+G +YI++L     +T +E  +  +  +  EA  SEMDSI      
Sbjct: 729  VDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTW 788

Query: 1244 SLLVYL*GVRPYD*MSL*EE------T*GRWNCGKI*G*LXXXXXXXXXXXXISSYSALT 1405
             ++    G +P     + ++      T  ++    +                  +YS + 
Sbjct: 789  EVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLV----AKGYTQKEGEDFFDTYSPVA 844

Query: 1406 RISSFEMLIYFAAINNLEIHQVDVKITF*NCELDK*IYIEQPEDFVVKGYENKFCKLNKY 1585
            R+++  +L+  AA + L +HQ+DVK  F N EL++ IY++QP+ +V++G E   CKL K 
Sbjct: 845  RLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKS 904

Query: 1586 LYDSK*ARK**HE 1624
            LY  K A K  HE
Sbjct: 905  LYGLKQAPKQWHE 917



 Score = 65.5 bits (158), Expect(4) = 2e-44
 Identities = 49/141 (34%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
 Frame = +3

Query: 1659 VNESDKYIYK*LVKDACVIVCLYVDDMLIPDTNIDVINSTKTCTXXXXXXXXXXP----F 1826
            VNE+DK +Y        VI+CLYVDD+LI  T+++VI   K                   
Sbjct: 930  VNEADKCVYYRYGGGKGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVIL 989

Query: 1827 *CNLRDED*KIIKHL*S*SFSLC*IVLKRYNQCDCKPASTPYDYSCILKKNKGSGVS*LE 2006
               L+  D   I  + S        VL R+   DCKPA TPYD S +L+KN+      L 
Sbjct: 990  NIKLQRGDEGGITLVQSHYVDK---VLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLR 1046

Query: 2007 YSRVIGCLMNFMNCKSPEIAY 2069
            YS++IG LM   +   P+I++
Sbjct: 1047 YSQIIGSLMYLASATRPDISF 1067



 Score = 38.9 bits (89), Expect(4) = 2e-44
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 22/111 (19%)
 Frame = +3

Query: 705 ITQNLWEEVVL*FCYILNRVT--------FKGWDKNSYDYE---------KIYNLFMHTS 833
           +++  W E VL  C++LN++         F+ W++   +           K+    +   
Sbjct: 579 LSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIVKKR 638

Query: 834 KCGG-----V*IRFLEYPTAYRFLVVCSDFSDFGVKVITESRDAEFFEHVY 971
           K G      V + +  +   YRFL+V S   D     I ESRDA FFE+ +
Sbjct: 639 KLGPKTVDCVFLGYAIHSVVYRFLIVNSGVPDMHAGTIFESRDATFFENEF 689


>gb|ABA97586.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 786

 Score = 70.5 bits (171), Expect(4) = 4e-44
 Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 6/193 (3%)
 Frame = +2

Query: 1064 VDPRRSKMIITETSYGLNYIIFLY*SEFQTRKETITFIEIPFR*EASFSEMDSIRQIRLG 1243
            V  R+SK   T  S+G +YI++L     +T +E  +     +  EA  SEMDSI      
Sbjct: 284  VATRKSKRQRTAMSFGDDYIVYLVDDTPRTIEEAYSSPNADYWKEAVRSEMDSIMSNGTW 343

Query: 1244 SLLVYL*GVRPYD*MSL*EE------T*GRWNCGKI*G*LXXXXXXXXXXXXISSYSALT 1405
             ++  L G +P     + ++      T  ++    +                  +YS + 
Sbjct: 344  QVVERLYGCKPVGCKWVFKKKLRLDGTIEKYKARLV----AKGYTQKEGVDFFDTYSPVA 399

Query: 1406 RISSFEMLIYFAAINNLEIHQVDVKITF*NCELDK*IYIEQPEDFVVKGYENKFCKLNKY 1585
             +++  +L+  AA + L +HQ+DVK TF N EL++ IY++QP+ +V++G E   CKL K 
Sbjct: 400  LLTTIPVLLTLAASHGLLVHQMDVKTTFLNGELEEEIYMDQPDGYVLEGREGMVCKLLKS 459

Query: 1586 LYDSK*ARK**HE 1624
            LY  K A K  HE
Sbjct: 460  LYGLKQAPKQWHE 472



 Score = 65.9 bits (159), Expect(4) = 4e-44
 Identities = 55/161 (34%), Positives = 76/161 (47%), Gaps = 13/161 (8%)
 Frame = +1

Query: 253 VPKFSLDFDHKSEFYVESKYAIKPFSKNVQSNSKPLELIQLGLVEMSSTRTKVVKGS-L* 429
           +PKF+L    K    V+SK   KP   +V  N  PLEL+   L EM+   TK  K   + 
Sbjct: 4   IPKFTLVKGSKCHTCVQSKQPRKPHKASVARNLAPLELVHSDLCEMNGVLTKGGKKYFMT 63

Query: 430 LS*MIVRGTLLYN*LGVRMIP*KP*E------YKLEIESEVYVTTKLVRSKHDGKYEIHM 591
           L     R   +Y      ++  K         YK E+E+++    K +RS   G+Y  + 
Sbjct: 64  LIDDCTRFCYVY------LLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYFSNE 117

Query: 592 LN------GIIHEIASPYSP*SNGIVERKSRIIKEMIYAML 696
                   GIIHE   PYSP SNG+ ERK+  + EM+ AML
Sbjct: 118 FTSFCEEYGIIHERTPPYSPQSNGVAERKNHTLTEMVNAML 158



 Score = 63.2 bits (152), Expect(4) = 4e-44
 Identities = 45/139 (32%), Positives = 64/139 (46%)
 Frame = +3

Query: 1659 VNESDKYIYK*LVKDACVIVCLYVDDMLIPDTNIDVINSTKTCTXXXXXXXXXXPF*CNL 1838
            VNE+DK +Y        VI+CLYVDD+LI +T+++VI                       
Sbjct: 485  VNEADKCVYYRYGGGEGVILCLYVDDILIFETSLNVIEE--------------------- 523

Query: 1839 RDED*KIIKHL*S*SFSLC*IVLKRYNQCDCKPASTPYDYSCILKKNKGSGVS*LEYSRV 2018
                   +K   S SF +           DCK A TPYD S +L+KN+      L YS++
Sbjct: 524  -------VKDFLSKSFEMM--------NFDCKAAPTPYDPSVLLRKNRRIARDQLRYSQI 568

Query: 2019 IGCLMNFMNCKSPEIAYIM 2075
            IG LM   +   P+I++ M
Sbjct: 569  IGSLMYLASATRPDISFAM 587



 Score = 49.3 bits (116), Expect(4) = 4e-44
 Identities = 29/89 (32%), Positives = 45/89 (50%)
 Frame = +3

Query: 705 ITQNLWEEVVL*FCYILNRVTFKGWDKNSYDYEKIYNLFMHTSKCGGV*IRFLEYPTAYR 884
           +++  W + +L  CY+LNR+  K  +   +D  +   L +  +  G        +   YR
Sbjct: 163 LSKEWWGDAILTACYVLNRIPTKHKEVTPFDEWERKKLNLSPAHMG-------LFGQGYR 215

Query: 885 FLVVCSDFSDFGVKVITESRDAEFFEHVY 971
           FL+V S   D  V  ITESRDA FFE+ +
Sbjct: 216 FLIVNSGVPDMRVGTITESRDATFFENEF 244