BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver25_contig00028986
         (2485 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004289288.1| PREDICTED: DNA topoisomerase 3-alpha-like [F...   482   e-133
ref|XP_002527391.1| prokaryotic DNA topoisomerase, putative [Ric...   481   e-133
ref|XP_004239191.1| PREDICTED: DNA topoisomerase 3-alpha-like [S...   480   e-132
ref|XP_004502963.1| PREDICTED: DNA topoisomerase 3-alpha-like [C...   479   e-132
ref|XP_006341743.1| PREDICTED: DNA topoisomerase 3-alpha-like [S...   479   e-132
ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis ...   474   e-131
ref|XP_004136599.1| PREDICTED: DNA topoisomerase 3-alpha-like [C...   473   e-130
ref|XP_006829322.1| hypothetical protein AMTR_s00202p00033660 [A...   473   e-130
ref|XP_002307047.1| hypothetical protein POPTR_0005s06810g [Popu...   473   e-130
ref|XP_006394227.1| hypothetical protein EUTSA_v10003618mg [Eutr...   469   e-129
ref|XP_006581777.1| PREDICTED: DNA topoisomerase 3-alpha isoform...   468   e-129
ref|XP_006649448.1| PREDICTED: DNA topoisomerase 3-alpha-like [O...   467   e-128
ref|XP_006279975.1| hypothetical protein CARUB_v10025845mg [Caps...   467   e-128
ref|XP_002864876.1| hypothetical protein ARALYDRAFT_496584 [Arab...   467   e-128
ref|NP_001173278.1| Os03g0165000 [Oryza sativa Japonica Group] g...   466   e-128
gb|EYU20574.1| hypothetical protein MIMGU_mgv1a000984mg [Mimulus...   466   e-128
ref|NP_201197.1| topoisomerase 3alpha [Arabidopsis thaliana] gi|...   466   e-128
ref|XP_003526873.1| PREDICTED: DNA topoisomerase 3-alpha isoform...   465   e-128
ref|XP_002465810.1| hypothetical protein SORBIDRAFT_01g046210 [S...   464   e-128
ref|XP_004985595.1| PREDICTED: DNA topoisomerase 3-alpha-like [S...   464   e-127

>ref|XP_004289288.1| PREDICTED: DNA topoisomerase 3-alpha-like [Fragaria vesca subsp.
            vesca]
          Length = 908

 Score =  482 bits (1240), Expect = e-133
 Identities = 300/781 (38%), Positives = 414/781 (53%), Gaps = 30/781 (3%)
 Frame = +3

Query: 114  IRVLNVAEKPSAARKIVDVLSLEGRNLVRTVNQHGVEVFEFNDFPFRNRLCTMVVTSVSG 293
            +RVLNVAEKPS A+ + ++LS      +R       +++EFN +      C M+ TSV+G
Sbjct: 2    VRVLNVAEKPSVAKSVANILSRGQGLRMREGRSRYNKIYEFN-YSINGCHCQMLFTSVTG 60

Query: 294  HLYQTEFDDSKFKRWNLHDPVDLFKAKIRKFVLPKNDKYEKTLKEKAVECDELFLWLDGN 473
            HL + EF+D +F++W+  DP  LF+A +RKFV       ++TL+E+A  C  L LWLD +
Sbjct: 61   HLMELEFED-RFRKWHSCDPALLFQAPVRKFVPEDKLDIKRTLEEEARNCQWLVLWLDCD 119

Query: 474  DEGEYIAWEVADVCASAKLGITVHRANFKALVDEDIKYAAQNPGVLNYNVIAAVDYRIEV 653
             EGE IA+EV DVC S    +T+ RA F AL+D DI +A QN    N     AVD R E+
Sbjct: 120  REGENIAFEVIDVCTSVNRHLTIKRARFSALIDRDIHHAVQNLDNANKYFADAVDARQEI 179

Query: 654  DFKIGCSYSRFNTILFQAAF---GPLNRSGKTLKFGTSLLPHLEFITNRYWDRIKHVPTK 824
            D +IG S++RF T+L + AF      +     L +G    P L FI  RYW+   H P +
Sbjct: 180  DLRIGASFTRFQTMLLRDAFVIDSATDDRNLVLSYGPCQFPTLGFIVERYWEIQSHEPEE 239

Query: 825  FWTLECTHTNDRGKITRFEYSRVHLHGRMPNHALATARLGEYQQQTATVLEPCNKSLRHV 1004
            FWT+ C+H +D G  T F + R HL     +HA A        +     +    +  +  
Sbjct: 240  FWTINCSHRSDEGTAT-FGWMRGHLF----DHACAVIIYEMCVEDPIATVTKVRQQEKPK 294

Query: 1005 EPPSPLNTLELLKCASDYYGMSSALTMDVAEELYKLGVISYPRTPATSFDRIATDLPRLV 1184
             PP PLNT+EL K AS Y+ MSS  TM VAEELY+ G ISYPRT    F    TDL  +V
Sbjct: 295  YPPYPLNTIELEKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDGFSP-RTDLHAIV 353

Query: 1185 GAQQWDPQWGVYAQNLLADPTPMLLQGGVPQSNQGEVEDLPIYPTRYHDG-LGWSTDFKR 1361
              QQ  P WG YAQ LL DP   L +      +  +    PI+PT++  G   WS D  R
Sbjct: 354  QEQQGHPGWGSYAQRLL-DPASGLWRNPSSGGHDDKAHP-PIHPTKFSAGESNWSQDHNR 411

Query: 1362 VYGIVVRYFLASLSRTVWIRQSTAVLGMTNETLYARGEEVRGYFSYFDIFPFTSWKKSEI 1541
            +Y +VVR+FLA +S+     ++T  + +  E   A G  +    +Y D++ F SW  S +
Sbjct: 412  LYELVVRHFLACVSQPAVGAETTVEIDIAGEMFSASGRVILAK-NYLDVYRFESWGGSLL 470

Query: 1542 PKYYTGQMLTP-IWALVPGTTXXXXXXXXXXXXDYMIKEGTGTDSTMHIHVEKCLDG-YA 1715
            P Y  GQ   P    L  G T              M KEG GTD+TMH H++K LD  YA
Sbjct: 471  PTYAVGQQFMPTTLTLDSGVTRPPPLLSEADLLGCMDKEGIGTDATMHDHIKKLLDRFYA 530

Query: 1716 TRDVNMLLTPTDLGQALVKGYHDMGYKLKQANLD--MEKDMQDIRTQTRRKADVLKDCLE 1889
            T+D N   +PT+LG+ALV GY DMGYKL +  L   ME+DM+ +    + KA+VL+ CL+
Sbjct: 531  TKDANTRFSPTNLGEALVMGYDDMGYKLWKPYLRAVMERDMKAVSEGNKSKAEVLETCLQ 590

Query: 1890 QAETSYKEVTENRMALIQAGETFLGKKS-----------NCVRRCSTCDESEMVLQTRDG 2036
            Q +  + +  +N++ L +A   F  + +             +RRC  C E++MVL+    
Sbjct: 591  QMKGCFLDARQNKVKLFEAMAVFFERSNRPGGDDQHTSGEFIRRCGLCQEADMVLRKNRD 650

Query: 2037 GNFEVAC-ARANCKGVVKLPSCIETATVTDQVCEFCVPRKVFKIRFKFREGEIPRIYRSM 2213
            GNF V C     C+  + LP  +  A  T  +C  C P  V  I+F FR  EIP  Y + 
Sbjct: 651  GNFMVGCMGYPQCRNAIWLPGSVSEAVATTNICNSCTPGPVHLIQFTFRRLEIPPNYSTN 710

Query: 2214 HVGCI-VCDRLINQLKNLCGFG-RSNGWTREDSPSGMVY--------CVKCKQSGHVFSE 2363
            H+GCI  CD ++ QL  +CG G RS    R  + S  V         C+ C QSGH   +
Sbjct: 711  HLGCIGGCDEILRQLTEICGTGSRSAARGRGPTTSSNVQQNNTRQGACIYCHQSGHSSGD 770

Query: 2364 C 2366
            C
Sbjct: 771  C 771


>ref|XP_002527391.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
            gi|223533243|gb|EEF34998.1| prokaryotic DNA
            topoisomerase, putative [Ricinus communis]
          Length = 833

 Score =  481 bits (1239), Expect = e-133
 Identities = 309/788 (39%), Positives = 424/788 (53%), Gaps = 37/788 (4%)
 Frame = +3

Query: 114  IRVLNVAEKPSAARKIVDVLSLEGRN--LVRTVNQHGVEVFEFNDFPFRNRLCTMVVTSV 287
            I VLNVAEKPS A+ +  +LS   ++   VR       ++FEFN +    + C M+VTSV
Sbjct: 2    INVLNVAEKPSVAKSVATILSRNQQHGLRVREGQSRYNKIFEFN-YVINGQNCHMLVTSV 60

Query: 288  SGHLYQTEFDDSKFKRWNLHDPVDLFKAKIRKFVLPKNDKYEKTLKEKAVECDELFLWLD 467
            +GHL + EFDD +F++W+  DP DL+ A +RKFV       ++TL+E+A  C  L LWLD
Sbjct: 61   TGHLMELEFDD-RFRKWHSCDPADLYHAPVRKFVPEDKTNIKRTLEEEARRCQWLILWLD 119

Query: 468  GNDEGEYIAWEVADVCASAKLGITVHRANFKALVDEDIKYAAQNPGVLNYNVIAAVDYRI 647
             + EGE IA+EV DVC SA   +TV RA F AL+D +I  AAQN    N     AVD R 
Sbjct: 120  CDREGENIAFEVVDVCRSANRYLTVRRARFSALIDREIHEAAQNLVSPNQWFSDAVDARQ 179

Query: 648  EVDFKIGCSYSRFNTILFQAAF---GPLNRSGKTLKFGTSLLPHLEFITNRYWDRIKHVP 818
            E+D +IG S++RF T+L +  F      +     L +G    P L FI  RYW+   H  
Sbjct: 180  EIDLRIGASFTRFQTLLLRDKFVIDSAQDDRNLVLSYGPCQFPTLGFIVERYWEIQSHES 239

Query: 819  TKFWTLECTHTNDRGKITRFEYSRVHLHGRMPNHALATARLGEYQ----QQTATVLEPCN 986
             +FWT+ C+HT+  G I  F + R HL          T+ +  Y+    + TATV +   
Sbjct: 240  EEFWTINCSHTSVEG-IANFSWMRGHLFD-------YTSAVILYELCVLEPTATVTKVQQ 291

Query: 987  KSLRHVEPPSPLNTLELLKCASDYYGMSSALTMDVAEELYKLGVISYPRTPATSFDRIAT 1166
            K  +   PP PL+T+EL K AS Y+ MSS  TM VAE+LY+ G ISYPRT    F    T
Sbjct: 292  KE-KQKYPPYPLSTIELEKRASRYFHMSSEQTMKVAEDLYQSGFISYPRTETDGFSS-RT 349

Query: 1167 DLPRLVGAQQWDPQWGVYAQNLLADPTPMLLQGGVPQSNQGEVEDLPIYPTRYHDG-LGW 1343
            DL  +V  QQ  P WG YAQ LL DP   L +      +  +    PI+PT++  G  GW
Sbjct: 350  DLHTIVRDQQAHPIWGSYAQRLL-DPGTGLWRNPSTGGHDDKAHP-PIHPTKFSPGETGW 407

Query: 1344 STDFKRVYGIVVRYFLASLSRTVWIRQSTAVLGMTNETLYARGEEVRGYFSYFDIFPFTS 1523
            S D  RVY +VVR+FLA +S+     ++T  + +  E   A G  +    +Y D++ F S
Sbjct: 408  SQDHHRVYELVVRHFLACVSQPAVGAETTVEIDIAGEQFSASGRVILAK-NYLDVYRFES 466

Query: 1524 WKKSEIPKYYTGQMLTP-IWALVPGTTXXXXXXXXXXXXDYMIKEGTGTDSTMHIHVEKC 1700
            W  S IP Y  GQ   P    L  G T              M K G GTD+TMH H++K 
Sbjct: 467  WGGSMIPTYVHGQQFMPTTLTLDSGVTRPPPLLSESDLLSCMDKAGIGTDATMHDHIKKL 526

Query: 1701 LDG-YATRDVNMLLTPTDLGQALVKGYHDMGYKLKQANLD--MEKDMQDIRTQTRRKADV 1871
            LD  YAT+D N   +PT+LG+ALV GY DMGY+L + NL   ME DM+++    + KA+V
Sbjct: 527  LDRFYATKDANTRFSPTNLGEALVMGYDDMGYELWKPNLRSMMEYDMKEVSMGHKSKAEV 586

Query: 1872 LKDCLEQAETSYKEVTENRMALIQAGETFLGKKS-----------NCVRRCSTCDESEMV 2018
            L+ CL+Q +T + +   N++ L++A   F  +             + VR+C  C E+ MV
Sbjct: 587  LETCLQQMKTCFLDARINKVKLLEAMAVFFERSDRSSGNDNHATVDIVRQCGLCRETNMV 646

Query: 2019 LQTRDGGNFEVAC-ARANCKGVVKLPSCIETATVTDQVCEFCVPRKVFKIRFKFREGEIP 2195
            L+    GNF V C     C+  + LP  I  ATVT  VC +C P  V+ I+FKFR+ EIP
Sbjct: 647  LRRNRDGNFMVGCMGYPQCRNAIWLPGPIIEATVTTSVCNYCTPGPVYLIQFKFRQLEIP 706

Query: 2196 RIYRSMHVGCI-VCDRLINQLKNLCGFG----------RSNGWTREDSPSGMVYCVKCKQ 2342
              +   H+GCI  CD  + QL ++CG G           +     + S +    CV C Q
Sbjct: 707  PGFSVNHLGCIGGCDDTLRQLTDICGTGSRVQARARAPNTTPSNSQQSNTRFATCVHCHQ 766

Query: 2343 SGHVFSEC 2366
            +GH   +C
Sbjct: 767  TGHASIDC 774


>ref|XP_004239191.1| PREDICTED: DNA topoisomerase 3-alpha-like [Solanum lycopersicum]
          Length = 910

 Score =  480 bits (1236), Expect = e-132
 Identities = 309/792 (39%), Positives = 425/792 (53%), Gaps = 37/792 (4%)
 Frame = +3

Query: 114  IRVLNVAEKPSAARKIVDVLSLE--GRNLVRTVNQHGVEVFEFNDFPFRNRLCTMVVTSV 287
            IRVLNVAEKPS A+ +  +LS    G   VR       ++FEFN +  RN+ C M+ TSV
Sbjct: 9    IRVLNVAEKPSVAKAVSGILSKNQPGGIRVRDGRSRYNKIFEFN-YTIRNQPCQMLFTSV 67

Query: 288  SGHLYQTEFDDSKFKRWNLHDPVDLFKAKIRKFVLPKNDKYEKTLKEKAVECDELFLWLD 467
            +GHL + EF + ++++W+  DP+DL+ A IRKFV       ++TL+ +A  C  + LWLD
Sbjct: 68   TGHLMEIEFHE-RYRKWHSCDPLDLYNAPIRKFVPEDKLDIKRTLEAEARSCQWIILWLD 126

Query: 468  GNDEGEYIAWEVADVCASAKLGITVHRANFKALVDEDIKYAAQNPGVLNYNVIAAVDYRI 647
             + EGE IA+EV DVC  A   +TV RA F AL+D +I  + Q     N     AVD R 
Sbjct: 127  CDREGENIAFEVLDVCRQANHNLTVWRARFSALIDREIHQSVQTLVQPNQLFSDAVDVRQ 186

Query: 648  EVDFKIGCSYSRFNTILFQAAF---GPLNRSGKTLKFGTSLLPHLEFITNRYWDRIKHVP 818
            E+D +IG S++RF T+L + AF      +     L +G    P L F+  RYW+   H P
Sbjct: 187  EIDLRIGASFTRFQTMLLRGAFVLDFATDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEP 246

Query: 819  TKFWTLECTHTNDRGKITRFEYSRVHLHGRMPNHALATARLGEYQQQTATVLEPCNKSLR 998
             +FWT+ CTH +D G  T F + R HL        +    +   Q+  ATV +   +  +
Sbjct: 247  EEFWTINCTHNSDEGTAT-FNWMRGHLFDYTCGVMIYEMCI---QEPIATVTK-VKQQEK 301

Query: 999  HVEPPSPLNTLELLKCASDYYGMSSALTMDVAEELYKLGVISYPRTPATSFDRIATDLPR 1178
               PP PL+T+EL K AS Y+ MSS  TM VAE+LY+ G ISYPRT    F    TDL  
Sbjct: 302  LKYPPHPLSTIELEKRASRYFRMSSEQTMKVAEDLYQNGFISYPRTETDCFSD-KTDLRT 360

Query: 1179 LVGAQQWDPQWGVYAQNLLADPTPMLLQGGVPQSNQGEVED----LPIYPTRYHDG-LGW 1343
            +V  Q+  P WG YAQ LL DP     Q G+ ++  G   D     PI+PT++  G   W
Sbjct: 361  MVQEQEGHPVWGTYAQRLL-DP-----QSGLWRNPSGGGHDDKAHPPIHPTKFSAGETRW 414

Query: 1344 STDFKRVYGIVVRYFLASLSRTVWIRQSTAVLGMTNETLYARGEEVRGYFSYFDIFPFTS 1523
            S D  RVY +VVR+FLA +S+     ++   + +  E+  A G  +    +Y D++ F S
Sbjct: 415  SQDHHRVYELVVRHFLACVSQPAVGAETIVEIDIAGESFSACGRVILAK-NYLDVYRFES 473

Query: 1524 WKKSEIPKYYTGQMLTP-IWALVPGTTXXXXXXXXXXXXDYMIKEGTGTDSTMHIHVEKC 1700
            W  S IP Y  GQ  TP    L  G                M K G GTD+TMH H++K 
Sbjct: 474  WGGSVIPTYSFGQQFTPTTLTLDSGVIRPPPLLSEADLLGCMDKAGIGTDATMHDHIKKL 533

Query: 1701 LDG-YATRDVNMLLTPTDLGQALVKGYHDMGYKLKQANLD--MEKDMQDIRTQTRRKADV 1871
            LD  YA +D N   +PT LG+ALV GY DMGY+L +  L   ME DM+ + T T+RKA+V
Sbjct: 534  LDRFYAIKDSNTRFSPTKLGEALVMGYDDMGYELWKPYLRAMMECDMKAVSTGTKRKAEV 593

Query: 1872 LKDCLEQAETSYKEVTENRMALIQAGETFLGKKSN-----------CVRRCSTCDESEMV 2018
            L+ CL+Q +  + +   N+  L++A   F  + +             VRRC  C ES+MV
Sbjct: 594  LETCLQQMKACFSDARTNKEKLLEAMAIFFERSNRSSSGEQQAVGAVVRRCGLCLESDMV 653

Query: 2019 LQTRDGGNFEVAC-ARANCKGVVKLPSCIETATVTDQVCEFCVPRKVFKIRFKFREGEIP 2195
            L+ +  GNF V C     C+ VV LP  +  A+VT+  C  C P  VFKI+FKFR+ EIP
Sbjct: 654  LRQKPDGNFMVGCLGYPQCRNVVWLPGSVSEASVTENTCITCSPGPVFKIQFKFRQQEIP 713

Query: 2196 RIYRSMHVGCI-VCDRLINQLKNLCGFGRSNGWTR----------EDSPSGMVYCVKCKQ 2342
              Y   H+GCI  CD ++ QL  +CG G  N   R           D+      C  C+Q
Sbjct: 714  PDYSVQHLGCIGGCDDILRQLVEICGTGSRNSRGRGNPTAFSSAQRDNSRAQSSCAYCRQ 773

Query: 2343 SGHVFSECTQPA 2378
            +GH+ ++C   A
Sbjct: 774  TGHLSNDCPSQA 785


>ref|XP_004502963.1| PREDICTED: DNA topoisomerase 3-alpha-like [Cicer arietinum]
          Length = 920

 Score =  479 bits (1233), Expect = e-132
 Identities = 301/787 (38%), Positives = 426/787 (54%), Gaps = 36/787 (4%)
 Frame = +3

Query: 114  IRVLNVAEKPSAARKIVDVLSLEGRNLVRTVNQHGVEVFEFNDFPFRNRLCTMVVTSVSG 293
            + VLNVAEKPS A+ + ++LS      VR        +FEFN +  R + C M+ TSV G
Sbjct: 6    VTVLNVAEKPSVAKSVANILSRNQGLRVRDGRSRYNRIFEFN-YTIRGQPCHMLFTSVIG 64

Query: 294  HLYQTEFDDSKFKRWNLHDPVDLFKAKIRKFVLPKNDKYEKTLKEKAVECDELFLWLDGN 473
            HL + EF+D ++++W+  DP DL+ A +RK V       ++TL+E+A  C  L LWLD +
Sbjct: 65   HLMELEFED-RYRKWHSCDPADLYHAPVRKSVPEDKKDIKRTLEEEARRCQWLVLWLDCD 123

Query: 474  DEGEYIAWEVADVCASAKLGITVHRANFKALVDEDIKYAAQNPGVLNYNVIAAVDYRIEV 653
             EGE IA+EV DVC +A   +T+ RA F AL+D +I  A QN    N     AVD R E+
Sbjct: 124  REGENIAFEVVDVCTAANPHLTIKRARFSALIDREIHQAVQNLVEPNKWFADAVDARQEI 183

Query: 654  DFKIGCSYSRFNTILFQAAF---GPLNRSGKTLKFGTSLLPHLEFITNRYWDRIKHVPTK 824
            D +IG S++RF T+L + AF      +     L +G    P L F+  RYW+   H P +
Sbjct: 184  DLRIGASFTRFQTMLMKDAFIIDTITDDRNIILSYGPCQFPTLGFVVERYWEIQAHEPEE 243

Query: 825  FWTLECTHTNDRGKITRFEYSRVHLHGRMPNHALATARLGEYQQQTATVLEPCNKSLRHV 1004
            FW++ C+H +D G +  F + R HL     ++  A        ++    +    +  +  
Sbjct: 244  FWSINCSHRSDEG-VANFSWGRGHLF----DYTCAVIIYEMCTEEPTATVTNVRQQEKLK 298

Query: 1005 EPPSPLNTLELLKCASDYYGMSSALTMDVAEELYKLGVISYPRTPATSFDRIATDLPRLV 1184
             PP PL+T+EL K AS Y+ MSS  TM VAEELY+ G ISYPRT   +F    TDL  +V
Sbjct: 299  YPPHPLSTIELEKRASRYFRMSSEHTMKVAEELYQSGFISYPRTETDNFSS-RTDLHAIV 357

Query: 1185 GAQQWDPQWGVYAQNLLADPTPMLLQGGVPQSNQGEVED----LPIYPTRYHDG-LGWST 1349
              QQ  PQWGVYAQ LL DP     + G+ ++ +G   D     PI+PT++  G  GWS 
Sbjct: 358  QEQQGHPQWGVYAQRLL-DP-----EAGLWRNPRGGGHDDKAHPPIHPTKFSAGESGWSQ 411

Query: 1350 DFKRVYGIVVRYFLASLSRTVWIRQSTAVLGMTNETLYARGEEVRGYFSYFDIFPFTSWK 1529
            D +++Y +VVR+FLA +S+     ++T  + +  E   A G  +    +Y D++ + SW 
Sbjct: 412  DHRKLYELVVRHFLACVSKPAVGAETTVEIDIAGELFSACGRVILEK-NYLDVYQYESWG 470

Query: 1530 KSEIPKYYTGQMLTP-IWALVPGTTXXXXXXXXXXXXDYMIKEGTGTDSTMHIHVEKCLD 1706
             S IP Y  GQ   P    L  G T              M KEG GTD+TMH H++K LD
Sbjct: 471  GSIIPTYTIGQQFIPTTLTLDSGVTRPPPPLSEADLLSCMDKEGIGTDATMHDHIKKLLD 530

Query: 1707 G-YATRDVNMLLTPTDLGQALVKGYHDMGYKLKQANLD--MEKDMQDIRTQTRRKADVLK 1877
              YAT+D +M  TPT+LG+ALV GY DMGYKL +  L   ME+DM+ +   T+ K +VL 
Sbjct: 531  RFYATKDASMRFTPTNLGEALVMGYDDMGYKLWKPYLRAVMERDMKSVSEGTKSKTEVLD 590

Query: 1878 DCLEQAETSYKEVTENRMALIQAGETFL-------GKKSNC----VRRCSTCDESEMVLQ 2024
              L+Q +  + +   N++ L++A   F        G++ N     VRRC  C ES+MVL+
Sbjct: 591  TSLQQMKACFLDARLNKVKLLEAMGIFFERSNRSGGEEQNAIGEVVRRCGLCRESDMVLK 650

Query: 2025 TRDGGNFEVAC-ARANCKGVVKLPSCIETATVTDQVCEFCVPRKVFKIRFKFREGEIPRI 2201
                GNF V C     C+  V LP  +  A VT   C  C P  V++I+FKFR+ EIP  
Sbjct: 651  KSRDGNFMVGCLGFPQCRNAVWLPGSVSEAVVTTNTCSNCTPGPVYRIQFKFRQLEIPPN 710

Query: 2202 YRSMHVGCI-VCDRLINQLKNLCGFG-----------RSNGWTREDSPSGMVYCVKCKQS 2345
            Y   H+GCI  CD ++ QL  +CG G            S G     +P   V C+ C+++
Sbjct: 711  YDVNHLGCIGGCDEILTQLTEICGTGPRMPARPRGPTTSTGNAHHTNPRQAV-CMNCQET 769

Query: 2346 GHVFSEC 2366
            GH  ++C
Sbjct: 770  GHSSNDC 776


>ref|XP_006341743.1| PREDICTED: DNA topoisomerase 3-alpha-like [Solanum tuberosum]
          Length = 915

 Score =  479 bits (1232), Expect = e-132
 Identities = 309/797 (38%), Positives = 429/797 (53%), Gaps = 42/797 (5%)
 Frame = +3

Query: 114  IRVLNVAEKPSAARKIVDVLSLE--GRNLVRTVNQHGVEVFEFNDFPFRNRLCTMVVTSV 287
            IRVLNVAEKPS A+ +  +LS    G   VR       ++FEFN +  RN+ C M+ TSV
Sbjct: 9    IRVLNVAEKPSVAKAVSGILSKNQPGGMRVRDGRSRYNKIFEFN-YTIRNQPCQMLFTSV 67

Query: 288  SGHLYQTEFDDSKFKRWNLHDPVDLFKAKIRKFVLPKNDKYEKTLKEKAVECDELFLWLD 467
            +GHL + EFD+ ++++W+  DP+DL+ A +RKFV       ++TL+ +A  C  + LWLD
Sbjct: 68   TGHLMELEFDE-RYRKWHSCDPLDLYNAPVRKFVPEDKLDIKRTLEAEARSCQWIVLWLD 126

Query: 468  GNDEGEYIAWEVADVCASAKLGITVHRANFKALVDEDIKYAAQNPGVLNYNVIAAVDYRI 647
             + EGE IA+EV DVC  A   + V RA F AL+D +I  + Q     N     AVD R 
Sbjct: 127  CDREGENIAFEVLDVCRQANHNLNVWRARFSALIDREIHQSVQTLVQPNQLFSDAVDVRQ 186

Query: 648  EVDFKIGCSYSRFNTILFQAAF---GPLNRSGKTLKFGTSLLPHLEFITNRYWDRIKHVP 818
            E+D +IG S++RF T+L + AF      +     L +G    P L F+  RYW+   H P
Sbjct: 187  EIDLRIGASFTRFQTMLLRGAFVLDFATDDRNIVLSYGPCQFPTLGFVVERYWEIQAHEP 246

Query: 819  TKFWTLECTHTNDRGKITRFEYSRVHLHGRMPNHALATARLGEYQQQTATVLEPCNKSLR 998
             +FWT+ CTH +D G  T F + R HL        +    +   Q+  ATV +   +  +
Sbjct: 247  EEFWTINCTHNSDEGTAT-FNWMRGHLFDYTCGVTIYEMCI---QEPIATVTK-VKQQEK 301

Query: 999  HVEPPSPLNTLELLKCASDYYGMSSALTMDVAEELYKLGVISYPRTPATSFDRIATDLPR 1178
               PP PL+T+EL K AS Y+ MSS  TM VAE+LY+ G ISYPRT   SF    TDL  
Sbjct: 302  LKYPPHPLSTIELEKRASRYFRMSSEQTMKVAEDLYQNGFISYPRTETDSFSE-KTDLRT 360

Query: 1179 LVGAQQWDPQWGVYAQNLLADPTPMLLQGGVPQSNQGEVED----LPIYPTRYHDG-LGW 1343
            +V  Q+  P WG+YAQ LL DP     Q G+ ++  G   D     PI+PT++  G   W
Sbjct: 361  MVQEQEGHPVWGIYAQRLL-DP-----QSGLWRNPSGGGHDDKAHPPIHPTKFSAGETRW 414

Query: 1344 STDFKRVYGIVVRYFLASLSRTVWIRQSTAVLGMTNETLYARGEEVRGYFSYFDIFPFTS 1523
            S D  RVY +VVR+FLA +S+     ++   + +  E+  A G  +    +Y D++ F S
Sbjct: 415  SQDHHRVYELVVRHFLACVSQPAVGAETIVEIDIAGESFSACGRVILAK-NYLDVYRFES 473

Query: 1524 WKKSEIPKYYTGQMLTP-IWALVPGTTXXXXXXXXXXXXDYMIKEGTGTDSTMHIHVEKC 1700
            W  S IP Y  GQ  TP    L  G T              M K G GTD+TMH H++K 
Sbjct: 474  WGGSVIPTYSFGQQFTPTTLTLDSGVTRPPPLLSEADLLGCMDKAGIGTDATMHDHIKKL 533

Query: 1701 LDG-YATRDVNMLLTPTDLGQALVKGYHDMGYKLKQANLD--MEKDMQDIRTQTRRKADV 1871
            LD  YA +D N   +PT LG+ALV GY DMGY+L +  L   ME DM+ +   T+RKA+V
Sbjct: 534  LDRFYAIKDSNTRFSPTKLGEALVMGYDDMGYELWKPYLRAMMECDMKAVSIGTKRKAEV 593

Query: 1872 LKDCLEQAETSYKEVTENRMALIQAGETFLGKKS-----------NCVRRCSTCDESEMV 2018
            L+ CL+Q +  + +   N+  L++A   F  + +           + VRRC  C ES+MV
Sbjct: 594  LETCLQQMKACFSDARTNKGKLLEAMAIFFERSNRSSGGEQQAVGDVVRRCGLCLESDMV 653

Query: 2019 LQTRDGGNFEVAC-ARANCKGVVKLPSCIETATVTDQVCEFCVPRKVFKIRFKFREGEIP 2195
            L+ +  GNF V C     C+ VV LP  +  A+VT+  C  C P  VFKI+FKFR  EIP
Sbjct: 654  LRQKPDGNFMVGCLGYPQCRNVVWLPGSVSEASVTENTCTSCSPGPVFKIQFKFRRLEIP 713

Query: 2196 RIYRSMHVGCI-VCDRLINQLKNLCGFG-RSNGWT--------------REDSPSGMVYC 2327
              Y   H+GCI  CD ++ QL  +CG G R+N  T              +  +      C
Sbjct: 714  PNYSVQHLGCIGGCDDILRQLVEICGTGSRNNSNTSGRGRGNPTASSSAQRGNSRAQSSC 773

Query: 2328 VKCKQSGHVFSECTQPA 2378
              C+Q+GH+ ++C   A
Sbjct: 774  AYCRQTGHLSNDCPSQA 790


>ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis vinifera]
          Length = 914

 Score =  474 bits (1221), Expect = e-131
 Identities = 299/784 (38%), Positives = 421/784 (53%), Gaps = 33/784 (4%)
 Frame = +3

Query: 114  IRVLNVAEKPSAARKIVDVLSLEGRNLVRTVNQHGVEVFEFNDFPFRNRLCTMVVTSVSG 293
            ++VLNVAEKPS A+ +  +LS      VR       ++FEFN +  R + C MVVTSV G
Sbjct: 1    MKVLNVAEKPSVAKAVATILSRNQGLRVREGRSRYNKLFEFN-YSIRGQHCQMVVTSVIG 59

Query: 294  HLYQTEFDDSKFKRWNLHDPVDLFKAKIRKFVLPKNDKYEKTLKEKAVECDELFLWLDGN 473
            HL + EF+D +F++W+  DP  L+ A +RKFV       ++TL+E+A +C  L LWLD +
Sbjct: 60   HLMELEFED-RFRKWHSCDPAHLYHAPVRKFVPEDKLDIKRTLEEEARKCQWLVLWLDCD 118

Query: 474  DEGEYIAWEVADVCASAKLGITVHRANFKALVDEDIKYAAQNPGVLNYNVIAAVDYRIEV 653
             EGE IA+EV +VCA     I V RA F AL+D +I  + QN    N     AVD R E+
Sbjct: 119  REGENIAFEVLEVCAQVNRHIDVWRARFSALIDREIHESVQNLVRPNQLFADAVDVRQEI 178

Query: 654  DFKIGCSYSRFNTILFQAAF---GPLNRSGKTLKFGTSLLPHLEFITNRYWDRIKHVPTK 824
            D +IG S++RF T+L + AF      +     L +G    P L F+  RYW+   H P +
Sbjct: 179  DLRIGASFTRFQTMLLRDAFVLDFAADDRNLVLSYGPCQFPTLGFVVERYWEIQSHEPEE 238

Query: 825  FWTLECTHTNDRGKITRFEYSRVHLHGRMPNHALATARLGEYQQQTATVLEPCNKSLRHV 1004
            FWT+ C+H +D G  T F + R HL     ++  A        Q+    +    +  +  
Sbjct: 239  FWTINCSHKSDEGTST-FNWMRAHLF----DYTCAVIIYEMCIQEPTATVTKVRQQEKLK 293

Query: 1005 EPPSPLNTLELLKCASDYYGMSSALTMDVAEELYKLGVISYPRTPATSFDRIATDLPRLV 1184
             PP PLNT+EL K AS Y+ MSS  TM VAE+LY+ G ISYPRT    F    TDL  +V
Sbjct: 294  YPPHPLNTIELEKRASRYFHMSSEHTMKVAEDLYQTGFISYPRTETDYFSE-RTDLHGIV 352

Query: 1185 GAQQWDPQWGVYAQNLLADPTPMLLQGGVPQSNQGEVEDL--PIYPTRYHDG-LGWSTDF 1355
              Q   P WG YAQ LL DP   L +     SN G  +    PI+PT++  G  GWS D 
Sbjct: 353  QEQLGHPIWGSYAQRLL-DPGAGLWRN---PSNGGHDDKAHPPIHPTKFSAGESGWSQDH 408

Query: 1356 KRVYGIVVRYFLASLSRTVWIRQSTAVLGMTNETLYARGEEVRGYFSYFDIFPFTSWKKS 1535
            +R+Y +VVR+FLA +S+     ++   + +  E+  + G  +    +Y D++ F SW  S
Sbjct: 409  QRLYELVVRHFLACVSQPAVGAETIVEIDIAGESFSSSGRVIIAK-NYLDVYRFESWGGS 467

Query: 1536 EIPKYYTGQMLTP-IWALVPGTTXXXXXXXXXXXXDYMIKEGTGTDSTMHIHVEKCLDG- 1709
             IP Y  GQ   P    L  G T            + M K G GTD+TMH H++K LD  
Sbjct: 468  MIPTYVFGQQFIPTTLTLDSGVTRPPPLLSEADLLNCMDKAGIGTDATMHDHIKKLLDRF 527

Query: 1710 YATRDVNMLLTPTDLGQALVKGYHDMGYKLKQANLD--MEKDMQDIRTQTRRKADVLKDC 1883
            YAT+D N   +PT+LG+ALV GY DMGY+L +  L   ME DM+ +   T+R+ +VL  C
Sbjct: 528  YATKDSNTRFSPTNLGEALVMGYDDMGYELWKPYLRSMMECDMKAVSIGTKRRNEVLTTC 587

Query: 1884 LEQAETSYKEVTENRMALIQAGETFLGKKS-----------NCVRRCSTCDESEMVLQTR 2030
            LEQ +  + +   N++ L++A   F  + +           + VR+C+ C ES+MVL+ +
Sbjct: 588  LEQMKACFLDARLNKVKLLEAMALFFERSNRSSGDEQHEVGDVVRQCTLCQESDMVLRRK 647

Query: 2031 DGGNFEVAC-ARANCKGVVKLPSCIETATVTDQVCEFCVPRKVFKIRFKFREGEIPRIYR 2207
              GNF V C     C+ VV LP  I  A +T   C  C P  V+KI+FKFR  EIP  Y 
Sbjct: 648  PDGNFMVGCLGYPQCRNVVWLPGSISEAAITTISCNHCTPGPVYKIQFKFRRLEIPPNYN 707

Query: 2208 SMHVGCIV-CDRLINQLKNLCGFG----------RSNGWTREDSPSGMVYCVKCKQSGHV 2354
              H+GC+  CD ++ QL  +CG G           ++    + S +    C+ C Q+GH 
Sbjct: 708  IDHLGCVCGCDEILRQLTEICGTGSRISARGRGSNASSTNAQRSNTRQTACIHCSQTGHS 767

Query: 2355 FSEC 2366
             ++C
Sbjct: 768  SNDC 771


>ref|XP_004136599.1| PREDICTED: DNA topoisomerase 3-alpha-like [Cucumis sativus]
          Length = 925

 Score =  473 bits (1218), Expect = e-130
 Identities = 299/784 (38%), Positives = 428/784 (54%), Gaps = 33/784 (4%)
 Frame = +3

Query: 114  IRVLNVAEKPSAARKIVDVLSLEGRNLVRTVNQHGVEVFEFNDFPFRNRLCTMVVTSVSG 293
            I VLNVAEKPS A+ +  +LS      VR       ++FEFN +  R + C M+VTSV+G
Sbjct: 7    ITVLNVAEKPSVAKSVATILSRNQGLRVRDGRSRYNKIFEFN-YAIRGQSCNMIVTSVTG 65

Query: 294  HLYQTEFDDSKFKRWNLHDPVDLFKAKIRKFVLPKNDKYEKTLKEKAVECDELFLWLDGN 473
            HL +  F++ ++++W+  DPV LF A + KFV       ++TL++++     L LWLD +
Sbjct: 66   HLMELAFEE-RYRKWHSCDPVQLFHAPVHKFVPEDKLDIKRTLEQESRRAQWLVLWLDCD 124

Query: 474  DEGEYIAWEVADVCASAKLGITVHRANFKALVDEDIKYAAQNPGVLNYNVIAAVDYRIEV 653
             EGE IA+EV +VC +    + + RA+F AL++ DI  A QN    N     AVD R E+
Sbjct: 125  REGENIAFEVVEVCTAVNHHLNIKRAHFSALIERDIHDAVQNLVQPNKWFADAVDARQEI 184

Query: 654  DFKIGCSYSRFNTILFQAAF---GPLNRSGKTLKFGTSLLPHLEFITNRYWDRIKHVPTK 824
            D +IG S++RF T+L + AF      +     L +G    P L F+  RYW+   H P +
Sbjct: 185  DLRIGASFTRFQTLLLKDAFNIDSVTDDRNIVLSYGPCQFPTLGFVVERYWEIQSHEPEE 244

Query: 825  FWTLECTHTNDRGKITRFEYSRVHLHGRMPNHALATARLGE-YQQQTATVLE-PCNKSLR 998
            FWT+ C+H +D G I+ F ++R    G + ++  A        Q+ TATV+     ++L+
Sbjct: 245  FWTINCSHNSDDG-ISTFSWTR----GNLFDYTCAVVFYEMCVQESTATVVNVRRQETLK 299

Query: 999  HVEPPSPLNTLELLKCASDYYGMSSALTMDVAEELYKLGVISYPRTPATSFDRIATDLPR 1178
            +  PP PLNT+EL K AS Y+ MSS  TM VAE+LY+ G ISYPRT    F +  TDL  
Sbjct: 300  Y--PPHPLNTIELEKRASRYFRMSSEHTMKVAEDLYQAGFISYPRTETDCFSQ-RTDLHG 356

Query: 1179 LVGAQQWDPQWGVYAQNLLADPTPMLLQGGVPQSNQGEVEDLPIYPTRYHDG-LGWSTDF 1355
            +V  QQ    WG YAQ LL DP   L +      +  +    PI+PT++  G  GWS D 
Sbjct: 357  IVREQQEHQIWGAYAQRLL-DPESRLWRNPSGGGHDDKAHP-PIHPTKFSAGERGWSQDH 414

Query: 1356 KRVYGIVVRYFLASLSRTVWIRQSTAVLGMTNETLYARGEEVRGYF-SYFDIFPFTSWKK 1532
             R+Y +VVR+FLA +S+      +T  + +  E L++  +       +Y D++ F SW  
Sbjct: 415  HRLYELVVRHFLACVSQPAVGAVTTVEIDIAGE-LFSTSKRANSILRNYLDVYRFESWGG 473

Query: 1533 SEIPKYYTGQMLTP-IWALVPGTTXXXXXXXXXXXXDYMIKEGTGTDSTMHIHVEKCLDG 1709
            S IP Y +GQ   P    L  G T              M KEG GTD+TMH H++K LD 
Sbjct: 474  STIPTYVSGQQFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDR 533

Query: 1710 -YATRDVNMLLTPTDLGQALVKGYHDMGYKLKQANLD--MEKDMQDIRTQTRRKADVLKD 1880
             YAT+D N   TPT+LG+ALV GY DMGY L + NL   ME +M+ +   T+RK +VL  
Sbjct: 534  FYATKDANTRFTPTNLGEALVMGYDDMGYNLWKPNLRAIMEHEMKAVSEGTKRKDEVLAS 593

Query: 1881 CLEQAETSYKEVTENRMALIQAGETFLGKKS-----------NCVRRCSTCDESEMVLQT 2027
            CL+Q +T + +   N+  L++A E F  + +             V+ C  C +S+MVL+ 
Sbjct: 594  CLQQMKTCFLDARVNKQKLLEAMEVFFERSNGSGGDENRAVGEVVQLCGLCQDSDMVLKR 653

Query: 2028 RDGGNFEVAC-ARANCKGVVKLPSCIETATVTDQVCEFCVPRKVFKIRFKFREGEIPRIY 2204
               GN+ V C     C+ VV LP  I  ATVT   C  C P  V+ I+FKFR+ EIP  Y
Sbjct: 654  NRDGNYMVGCLGFPQCRNVVWLPGSIAEATVTSDRCTLCTPGPVYLIQFKFRQLEIPPNY 713

Query: 2205 RSMHVGCI-VCDRLINQLKNLCGF---------GRSNGWTREDSPSGMVYCVKCKQSGHV 2354
             + H+GC+  CD ++ QL  +CG          G S+   + D+P G   C+ C+Q GH 
Sbjct: 714  NANHLGCVGGCDDILRQLTEICGTGSRVSARGRGTSSSNVQRDNP-GQSVCIFCQQVGHS 772

Query: 2355 FSEC 2366
             ++C
Sbjct: 773  SNDC 776


>ref|XP_006829322.1| hypothetical protein AMTR_s00202p00033660 [Amborella trichopoda]
            gi|548834342|gb|ERM96738.1| hypothetical protein
            AMTR_s00202p00033660 [Amborella trichopoda]
          Length = 988

 Score =  473 bits (1217), Expect = e-130
 Identities = 316/804 (39%), Positives = 432/804 (53%), Gaps = 39/804 (4%)
 Frame = +3

Query: 78   SLFFTSSCLMAQ-IRVLNVAEKPSAARKIVDVLSLEGRNLVRTVNQHGVEVFEFNDFPFR 254
            SLF  S   M + IRVLNVAEKPS A+ +  +LS +GR  VR       +V+EF +   R
Sbjct: 68   SLFEVSEGPMREGIRVLNVAEKPSVAKAVAGILS-QGRLRVREGRSRYNKVYEF-EHAIR 125

Query: 255  NRLCTMVVTSVSGHLYQTEFDDSKFKRWNLHDPVDLFKAKIRKFVLPKNDKYEKTLKEKA 434
             + C M+ TSV+GHL +  F + ++K+W+  DP DLF A I+K V       ++TL+E+A
Sbjct: 126  GQRCHMLFTSVTGHLMEIVFHE-RYKKWHSCDPADLFSAPIQKHVPQDKLDIKRTLEEEA 184

Query: 435  VECDELFLWLDGNDEGEYIAWEVADVCASAKLGITVHRANFKALVDEDIKYAAQNPGVLN 614
              C  L LWLD + EGE IA+EV +VC +A   + + RA+F AL+D +I++A QN G  N
Sbjct: 185  RTCQWLVLWLDCDREGENIAFEVVEVCTTANRNLDIWRAHFSALIDREIRHAVQNLGRPN 244

Query: 615  YNVIAAVDYRIEVDFKIGCSYSRFNTILFQAAFGPLNRS----GKTLKFGTSLLPHLEFI 782
                 AVD R E+D +IG S++RF T+L + AF  LN S       + +G    P L F+
Sbjct: 245  QLFSDAVDARQEIDLRIGASFTRFQTMLLKNAF-VLNISDDDKNVIVSYGPCQFPTLGFV 303

Query: 783  TNRYWDRIKHVPTKFWTLECTHTNDRGKITRFEYSRVHLHGRMPNHALATARLGEYQQQT 962
              RYW+   H P +FWT+ C+H  D G I  F ++R HL     + AL    +   ++ T
Sbjct: 304  VERYWEIQAHEPEEFWTINCSHKTDEG-IATFNWTRGHLFDY--SCALIIYEMC-VEEPT 359

Query: 963  ATVLEPCNKSLRHVEPPSPLNTLELLKCASDYYGMSSALTMDVAEELYKLGVISYPRTPA 1142
            ATV +  ++  R   PP PL+TLEL K AS Y+ MSS  TM VAE+LY+ G ISYPRT  
Sbjct: 360  ATVKKVSHQE-RRKYPPHPLSTLELQKRASQYFRMSSEHTMKVAEDLYQAGFISYPRTET 418

Query: 1143 TSFDRIATDLPRLVGAQQWDPQWGVYAQNLLADPTPMLLQGGVPQSNQGEVEDLPIYPTR 1322
             SF    TDL  LV  QQ  P+WG YAQ LL   +P  L          +    PI+PT+
Sbjct: 419  DSFSP-NTDLQALVREQQGHPEWGSYAQRLL---SPEGLWRNPSSGGHDDKAHPPIHPTK 474

Query: 1323 YHDG-LGWSTDFKRVYGIVVRYFLASLSRTVWIRQSTAVLGMTNETLYARGEEVRGYFSY 1499
            +  G   WS D  R+Y +VVR+FLA +S+      +T  + +  E   A G  +    +Y
Sbjct: 475  FSAGESSWSPDHHRLYELVVRHFLACVSQPAIGAGTTVEIDIAGEVFVASGLMIIEK-NY 533

Query: 1500 FDIFPFTSWKKSEIPKYYTGQMLTPI-WALVPGTTXXXXXXXXXXXXDYMIKEGTGTDST 1676
             +++ F SW  S IP Y  GQ   P    L    T              M K G GTD+T
Sbjct: 534  LEVYRFESWGGSTIPTYAFGQQFIPTRLTLDSSVTRPPPLLSESDLLSCMDKAGIGTDAT 593

Query: 1677 MHIHVEKCLDG-YATRDVNMLLTPTDLGQALVKGYHDMGYKLKQANL--DMEKDMQDIRT 1847
            MH H++K LD  YA +D N   +PT LG+ALV GY  MG+ L + NL   ME DM+ +  
Sbjct: 594  MHDHIKKLLDRFYAIKDSNTRFSPTTLGEALVMGYDCMGWDLWKPNLRSAMESDMKAVSE 653

Query: 1848 QTRRKADVLKDCLEQAETSYKEVTENRMALIQAGETFLGKKSNC------------VRRC 1991
              + K++VL  CL+Q +  + +V  ++  L +    F  ++SN             VR C
Sbjct: 654  GRKTKSEVLASCLQQMKDCFLDVKSHKAKLFETMGIFF-ERSNTPGGDNLHLAGGKVRSC 712

Query: 1992 STCDESEMVLQTRDGGNFEVACAR-ANCKGVVKLPSCIETATVTDQVCEFCVPRKVFKIR 2168
              C ESEMVL+ R  G+F V C R   C+ VV LP  I  A VT+ VC  C P  VFKI+
Sbjct: 713  QQCQESEMVLRRRPDGSFMVGCLRFPLCRNVVWLPGAISEALVTEHVCNVCNPEPVFKIQ 772

Query: 2169 FKFREGEIPRIYRSMHVGCI-VCDRLINQLKNLCGFG----RSNGWTREDSP-------- 2309
            FKFR  EIP  + + H+GCI  CD  + +L  +CG G     S   TR   P        
Sbjct: 773  FKFRRMEIPPNFDTEHLGCIGGCDETLRELIQICGTGPRNLSSGSGTRGRQPTQFSGSAQ 832

Query: 2310 ---SGMVYCVKCKQSGHVFSECTQ 2372
               +  V C +C+QSGH  ++C Q
Sbjct: 833  RRNTSQVVCARCRQSGHSSNDCPQ 856


>ref|XP_002307047.1| hypothetical protein POPTR_0005s06810g [Populus trichocarpa]
            gi|222856496|gb|EEE94043.1| hypothetical protein
            POPTR_0005s06810g [Populus trichocarpa]
          Length = 910

 Score =  473 bits (1216), Expect = e-130
 Identities = 300/784 (38%), Positives = 420/784 (53%), Gaps = 33/784 (4%)
 Frame = +3

Query: 114  IRVLNVAEKPSAARKIVDVLSLEGRNLVRTVNQHGVEVFEFNDFPFRNRLCTMVVTSVSG 293
            I+VLNVAEKPS A+ +  +LS   +  VR       ++FEFN +    + C M+VTSV+G
Sbjct: 2    IKVLNVAEKPSVAKSVATILS-RNQLRVRDGRSRYNKIFEFN-YSINGQQCHMLVTSVTG 59

Query: 294  HLYQTEFDDSKFKRWNLHDPVDLFKAKIRKFVLPKNDKYEKTLKEKAVECDELFLWLDGN 473
            HL + EF+D +F++W+  DP DL+ A +RK+V       ++TL+E+A  C  L LWLD +
Sbjct: 60   HLMEVEFED-RFRKWHSCDPADLYTAPVRKYVPEDKLDIKRTLEEEARRCHWLVLWLDCD 118

Query: 474  DEGEYIAWEVADVCASAKLGITVHRANFKALVDEDIKYAAQNPGVLNYNVIAAVDYRIEV 653
             EGE IA+EV +VC      +T+ RA F AL++ DI  AAQN    N     AVD R E+
Sbjct: 119  REGENIAFEVMEVCKGVNRNLTIRRARFSALIERDIHEAAQNLIAPNQWFSDAVDARQEI 178

Query: 654  DFKIGCSYSRFNTILFQAAF---GPLNRSGKTLKFGTSLLPHLEFITNRYWDRIKHVPTK 824
            D +IG S++RF T+L +  F      +     L +G    P L F+  RYW+   H P +
Sbjct: 179  DLRIGASFTRFQTMLLRDRFVIDSAQDDRNLVLSYGPCQFPTLGFVVERYWEIQSHEPEE 238

Query: 825  FWTLECTHTNDRGKITRFEYSRVHLHGRMPNHALATARLGEYQQQTATVLEPCNKSLRHV 1004
            FWT+ CTH +D G +  F + R HL     +  L    +   ++ TATV    ++  +  
Sbjct: 239  FWTINCTHRSDEG-LASFNWMRGHLFDYTSSVILYEMCV---EEPTATVSNRNHQQEKLK 294

Query: 1005 EPPSPLNTLELLKCASDYYGMSSALTMDVAEELYKLGVISYPRTPATSFDRIATDLPRLV 1184
             PP PL+T+EL K AS Y+ MSS  TM VAE+LY+ G ISYPRT   SF    TDL  +V
Sbjct: 295  YPPYPLSTIELEKRASRYFRMSSEQTMKVAEDLYQAGFISYPRTETDSFSS-RTDLHTIV 353

Query: 1185 GAQQWDPQWGVYAQNLLADPTPMLLQGGVPQSNQGEVEDL--PIYPTRYHDGLG-WSTDF 1355
               Q  P WG YAQ LL DP   L +     SN G  +    PI+PT++  G   WS D 
Sbjct: 354  QEHQEHPVWGSYAQRLL-DPGAGLWRN---PSNGGHDDKAHPPIHPTKFSAGESRWSQDH 409

Query: 1356 KRVYGIVVRYFLASLSRTVWIRQSTAVLGMTNETLYARGEEVRGYFSYFDIFPFTSWKKS 1535
             R+Y +VVR+FLA +S+     ++   + +  E   A G  +    +Y D++ F SW  S
Sbjct: 410  HRLYELVVRHFLACVSQPAVGAETVVEIDIAGERFSASGRVILAK-NYLDVYRFESWGDS 468

Query: 1536 EIPKYYTGQMLTP-IWALVPGTTXXXXXXXXXXXXDYMIKEGTGTDSTMHIHVEKCLDG- 1709
             IP Y  GQ   P    L  G T              M K G GTD+TMH H++K LD  
Sbjct: 469  MIPTYLQGQQFIPATLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRF 528

Query: 1710 YATRDVNMLLTPTDLGQALVKGYHDMGYKLKQANLD--MEKDMQDIRTQTRRKADVLKDC 1883
            Y T+D N   +PT+LG+ALV GY DMGY+L + NL   ME DM+++    + KA+VL  C
Sbjct: 529  YVTKDANTRFSPTNLGEALVMGYDDMGYELWKPNLRSLMECDMKEVSVGNKSKAEVLATC 588

Query: 1884 LEQAETSYKEVTENRMALIQAGETFLGKKSNC-----------VRRCSTCDESEMVLQTR 2030
            L+Q +  + +   N++ L++A   F  +               VR C  C E+ MVL+  
Sbjct: 589  LQQMKACFLDAKVNKVKLLEAMAIFFNRSDRSNGDDSSALGENVRPCGLCQEANMVLKKN 648

Query: 2031 DGGNFEVACAR-ANCKGVVKLPSCIETATVTDQVCEFCVPRKVFKIRFKFREGEIPRIYR 2207
              GNF V C+    C+  V LP  +  AT+T+ +C  C P  V+ I+FKFR+ EIP  + 
Sbjct: 649  RDGNFMVGCSGFPQCRNAVWLPGPVLEATITNNICNSCTPGPVYLIQFKFRQLEIPPGFN 708

Query: 2208 SMHVGCI-VCDRLINQLKNLCGFGR----SNG--WTREDSP----SGMVYCVKCKQSGHV 2354
              H+GCI  CD  + QL  +CG G      NG   T   +P    S    C+ C Q+GH 
Sbjct: 709  VNHLGCIGGCDETLRQLIEICGTGSRVQGGNGPPTTTPSNPQRSNSRQAPCIYCYQTGHA 768

Query: 2355 FSEC 2366
             ++C
Sbjct: 769  STDC 772


>ref|XP_006394227.1| hypothetical protein EUTSA_v10003618mg [Eutrema salsugineum]
            gi|557090866|gb|ESQ31513.1| hypothetical protein
            EUTSA_v10003618mg [Eutrema salsugineum]
          Length = 930

 Score =  469 bits (1206), Expect = e-129
 Identities = 296/783 (37%), Positives = 416/783 (53%), Gaps = 32/783 (4%)
 Frame = +3

Query: 114  IRVLNVAEKPSAARKIVDVLSLEGRNLVRTVNQHGVEVFEFNDFPFRNRLCTMVVTSVSG 293
            + VLNVAEKPS A+ +  +LS  G    R       ++FEF D+    + C M++TSV G
Sbjct: 9    VTVLNVAEKPSVAKSVAGILS-RGSFRTREGRSRYNKIFEF-DYAINGQPCRMLMTSVIG 66

Query: 294  HLYQTEFDDSKFKRWNLHDPVDLFKAKIRKFVLPKNDKYEKTLKEKAVECDELFLWLDGN 473
            HL + EF D +F++W+  DP DL++A + K V       +KTL+E+A + D L LWLD +
Sbjct: 67   HLMELEFSD-RFRKWHSCDPADLYQAPVMKHVPEDKKDIKKTLEEEARKSDWLVLWLDCD 125

Query: 474  DEGEYIAWEVADVCASAKLGITVHRANFKALVDEDIKYAAQNPGVLNYNVIAAVDYRIEV 653
             EGE IA+EV DVC + K  + + RA+F AL+D +I  AAQN    N     AVD R E+
Sbjct: 126  REGENIAFEVVDVCRAVKQNLFIRRAHFSALIDREIHEAAQNLREPNQLFAQAVDARQEI 185

Query: 654  DFKIGCSYSRFNTILFQAAFGPLNRSG----KTLKFGTSLLPHLEFITNRYWDRIKHVPT 821
            D +IG S++RF T+L +  F   +  G    + + +G    P L FI  RYW+   H P 
Sbjct: 186  DLRIGASFTRFQTMLLKDRFSIDSTGGEERSRVISYGPCQFPTLGFIVERYWEIQAHEPE 245

Query: 822  KFWTLECTHTNDRGKITRFEYSRVHLHGRMPNHALATARLGEYQQQTATVLEPCNKSLRH 1001
            +FWT+ C+H ++ G  T F + R HL   +    L    + E    TATV+   +   + 
Sbjct: 246  EFWTINCSHESEEGLAT-FNWMRGHLFDYVSAVILYEMCVLE---PTATVMNVPHPREKF 301

Query: 1002 VEPPSPLNTLELLKCASDYYGMSSALTMDVAEELYKLGVISYPRTPATSFDRIATDLPRL 1181
              PP PLNT+EL K AS Y+ +SS  TM VAEELY+ G ISYPRT   SF    TDL  +
Sbjct: 302  KYPPYPLNTIELEKRASRYFRLSSEHTMKVAEELYQAGFISYPRTETDSFSS-RTDLRAM 360

Query: 1182 VGAQQWDPQWGVYAQNLLADPTPMLLQGGVPQSNQGEVEDLPIYPTRYHDG-LGWSTDFK 1358
            V  Q   P WG YAQ LL          G       +    PI+PT++  G   WS D  
Sbjct: 361  VEEQTRHPAWGPYAQRLLEPEGGHWRNPG--NGGHDDKAHPPIHPTKFSSGESNWSRDHL 418

Query: 1359 RVYGIVVRYFLASLSRTVWIRQSTAVLGMTNETLYARGEEVRGYFSYFDIFPFTSWKKSE 1538
             VY +VVR++LA +S+     ++T  + +  E   A G  +    +Y +++ F SW  S 
Sbjct: 419  NVYELVVRHYLACVSQPAIAAETTVEIDIAGERFSASGRAILAK-NYLEVYRFESWGGSV 477

Query: 1539 IPKYYTGQMLTPI-WALVPGTTXXXXXXXXXXXXDYMIKEGTGTDSTMHIHVEKCLD-GY 1712
            IP Y  GQ   P    L    T              M K G GTD+TMH H++K LD GY
Sbjct: 478  IPVYEKGQQFIPTRLTLDSAVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRGY 537

Query: 1713 ATRDVNMLLTPTDLGQALVKGYHDMGYKLKQANLD--MEKDMQDIRTQTRRKADVLKDCL 1886
            AT+D N   +PT+LG+ALV GY DMGY+L + NL   ME DM ++   ++ KA+VL+ CL
Sbjct: 538  ATKDANTRFSPTNLGEALVMGYDDMGYELWKPNLRAIMEHDMNEVSVGSKTKAEVLQTCL 597

Query: 1887 EQAETSYKEVTENRMALIQAGETFLGKKSN-----------CVRRCSTCDESEMVLQTRD 2033
            +Q +  + +    +  L++    F  + +N            VRRC+ C ES+M L+   
Sbjct: 598  QQMKACFLDARVKKAKLLETMTIFFERSNNTDEGENQTAGEVVRRCNLCHESDMALRKNR 657

Query: 2034 GGNFEVAC-ARANCKGVVKLPSCIETATVTDQVCEFCVPRKVFKIRFKFREGEIPRIYRS 2210
             GNF V C +   C+  V LP     A+VT  VC+ C P  V+KIRFKFR+  IP  + +
Sbjct: 658  DGNFMVGCMSYPQCRNAVWLPGPTLEASVTADVCQSCGPAPVYKIRFKFRQIGIPPGFDT 717

Query: 2211 MHVGCI-VCDRLINQLKNLCGFG-RSNGWTREDSPSGMVY---------CVKCKQSGHVF 2357
             H+GC+  CD ++ QL ++CG G RS   T   + S             C+ C+Q GH  
Sbjct: 718  NHLGCVGGCDDILKQLIDICGTGSRSQARTAPGASSNNFQGGNIRQNNTCIHCQQRGHTS 777

Query: 2358 SEC 2366
            + C
Sbjct: 778  ANC 780


>ref|XP_006581777.1| PREDICTED: DNA topoisomerase 3-alpha isoform X3 [Glycine max]
          Length = 910

 Score =  468 bits (1204), Expect = e-129
 Identities = 297/788 (37%), Positives = 424/788 (53%), Gaps = 37/788 (4%)
 Frame = +3

Query: 114  IRVLNVAEKPSAARKIVDVLSLEGRNLVRTVNQHGVEVFEFNDFPFRNRLCTMVVTSVSG 293
            + VLNVAEKP  AR +  +LS      +R       ++FEFN +  R + C M+ TSV+G
Sbjct: 1    MNVLNVAEKPMVARTVATILSRNQNMRMREGRSRYNKIFEFN-YTIRGQPCHMIFTSVTG 59

Query: 294  HLYQTEFDDSKFKRWNLHDPVDLFKAKIRKFVLPKNDKYEKTLKEKAVECDELFLWLDGN 473
            HL + EFDD ++++W+  DP DLF+A + KFV       ++TL+E+A  C  L LWLD +
Sbjct: 60   HLMELEFDD-RYRKWHSCDPADLFRAPVHKFVPEDKKDIKRTLEEEARRCQWLILWLDCD 118

Query: 474  DEGEYIAWEVADVCASAKLGITVHRANFKALVDEDIKYAAQNP-GVLNYNVIAAVDYRIE 650
             EGE IA+EV DVC +    +T+ RA F  L+D DI  AAQN     +  V  AVD R E
Sbjct: 119  VEGENIAYEVIDVCTAVNPHLTIKRAWFSTLIDRDIHNAAQNDLRDPDKRVADAVDVRQE 178

Query: 651  VDFKIGCSYSRFNTILFQAAF---GPLNRSGKTLKFGTSLLPHLEFITNRYWDRIKHVPT 821
            +D +IG S++RF T+L + AF      +   + L +G    P L F+  R+W+   H P 
Sbjct: 179  IDLRIGASFTRFQTMLMKDAFIIDTATDDRNRVLSYGPCQFPTLGFVVERFWEIQAHEPE 238

Query: 822  KFWTLECTHTNDRGKITRFEYSRVHLHGRMPNHALATARLGEYQQQTATVLEPCNKSLRH 1001
            +FW++ C+H +  G    F + R    GR+ ++  A        ++    +    +  + 
Sbjct: 239  EFWSIICSHESKEG-TAEFSWMR----GRLFDYTCAVIIYEMCVEEPTATVTNIRQQEKP 293

Query: 1002 VEPPSPLNTLELLKCASDYYGMSSALTMDVAEELYKLGVISYPRTPATSFDRIATDLPRL 1181
              PP PLNT+EL K AS Y+ MSS  TM VAEELY+ G ISYPRT   SF    TDL  +
Sbjct: 294  KYPPFPLNTIELQKRASRYFRMSSDHTMKVAEELYQAGFISYPRTETDSFSP-GTDLHTI 352

Query: 1182 VGAQQWDPQWGVYAQNLLADPTPMLLQGGVPQSNQGEVED----LPIYPTRYHDG-LGWS 1346
            V  QQ  P+WG+YAQ L+ DP     + G+ ++ +G   D     PIYPT++  G  GWS
Sbjct: 353  VQEQQGHPEWGIYAQRLM-DP-----EAGLWRNPRGGGHDDKAHPPIYPTKFSTGESGWS 406

Query: 1347 TDFKRVYGIVVRYFLASLSRTVWIRQSTAVLGMTNETLYARGEEVRGYFSYFDIFPFTSW 1526
             D +++Y +VVR+FLA +S+     ++T  + +  E   A G  +    +Y D++ + SW
Sbjct: 407  QDHRKLYELVVRHFLACVSKPALGAETTVEINIAGELFSACGRVILEK-NYLDVYRYESW 465

Query: 1527 KKSEIPKYYTGQMLTPI-WALVPGTTXXXXXXXXXXXXDYMIKEGT--GTDSTMHIHVEK 1697
              S IP Y  GQ   P    L  G T             YM +E    GTD+TM  H++K
Sbjct: 466  GGSMIPTYTNGQQFNPTKLTLESGVTRPPPLLSEADLLSYMDREEAKIGTDATMQDHIKK 525

Query: 1698 CLD-GYATRDVNMLLTPTDLGQALVKGYH--DMGYKLKQANL--DMEKDMQDIRTQTRRK 1862
             LD  YAT+D +   TPT+LG+ALV GY   DM YKL + +L  +MEK M D++   + K
Sbjct: 526  MLDRSYATKDSSTRFTPTNLGEALVLGYDDIDMTYKLWKPDLRSEMEKKMDDVKKGDKSK 585

Query: 1863 ADVLKDCLEQAETSYKEVTENRMALIQAGETFLGKKSN--------CVRRCSTCDESEMV 2018
            A+VL   L++ E  + E   N++ L++A   F  + S+         VRRC  C ES+M+
Sbjct: 586  AEVLVTILQKMEACFLEARLNKVKLLEAMAIFFERSSSDELHATGEVVRRCGLCQESDML 645

Query: 2019 LQTRDGGNFEVAC-ARANCKGVVKLPSCIETATVTDQVCEFCVPRKVFKIRFKFREGEIP 2195
            L+    GNF V C     C+  V LP  +  A VT   C FC P  V+ I+FKFR  EIP
Sbjct: 646  LRKNRDGNFMVGCMGYPQCRNAVWLPGSVSEAVVTTNTCNFCTPGPVYLIQFKFRRLEIP 705

Query: 2196 RIYRSMHVGCI-VCDRLINQLKNLCGFG-----RSNGWTREDSPSGMV-----YCVKCKQ 2342
              Y   H+GCI  CD ++ QL  +CG G     R  G T   S +         C+ C++
Sbjct: 706  PNYSPNHLGCIGGCDEILAQLTEICGRGPRMPARPRGPTAPTSNAHHTNPRQGACMNCRE 765

Query: 2343 SGHVFSEC 2366
            +GH  ++C
Sbjct: 766  TGHSSTDC 773


>ref|XP_006649448.1| PREDICTED: DNA topoisomerase 3-alpha-like [Oryza brachyantha]
          Length = 923

 Score =  467 bits (1202), Expect = e-128
 Identities = 296/748 (39%), Positives = 410/748 (54%), Gaps = 24/748 (3%)
 Frame = +3

Query: 114  IRVLNVAEKPSAARKIVDVLSL-EGRNLVRTVNQHGVEVFEFNDFPFRNRLCTMVVTSVS 290
            IRVLNVAEKPS A+ + ++LS   G    R        VFEF  +    R C M+VTSV+
Sbjct: 10   IRVLNVAEKPSVAKSVAEILSRPSGGMRSREGRSRYNRVFEFG-YSIGGRACHMLVTSVT 68

Query: 291  GHLYQTEFDDSKFKRWNLHDPVDLFKAKIRKFVLPKNDKYEKTLKEKAVECDELFLWLDG 470
            GHL + EFDD +F+RW+  DP DLF A +RK V       ++TL+E+A  C  L LWLD 
Sbjct: 69   GHLMELEFDD-RFRRWHSCDPADLFHAPVRKSVPQDKQDIKRTLEEEARNCQWLVLWLDC 127

Query: 471  NDEGEYIAWEVADVCASAKLGITVHRANFKALVDEDIKYAAQNPGVLNYNVIAAVDYRIE 650
            + EGE IA+EV D+C+ A   + + RA F AL+D +I  A Q+    N     AVD R E
Sbjct: 128  DREGENIAYEVIDICSGANSRLNIWRARFSALIDREIHEAVQHLDRPNKLFADAVDARQE 187

Query: 651  VDFKIGCSYSRFNTILFQAAFGPLNRSG----KTLKFGTSLLPHLEFITNRYWDRIKHVP 818
            +D +IG S++RF T+L + AF  L+ +G      L +G    P L FI  R+W+   H P
Sbjct: 188  IDLRIGASFTRFQTMLLRDAF-VLDDTGDERNMILSYGPCQFPTLGFIVERFWEIQAHEP 246

Query: 819  TKFWTLECTHTNDRGKITRFEYSRVHLHGRMPNHALATARLGEYQQQTATVLEPCNKSLR 998
             +FWT+ C+HT+D G  + F + R HL     +++ A        ++    ++      +
Sbjct: 247  EEFWTINCSHTSDEGTAS-FGWIRGHLF----DYSSAVVIYEMCVEEPMATVQNVRNQEK 301

Query: 999  HVEPPSPLNTLELLKCASDYYGMSSALTMDVAEELYKLGVISYPRTPATSFDRIATDLPR 1178
               PP PL+T+EL K AS Y+ MSS  TM VAEELY+ G ISYPRT   +F    TDL  
Sbjct: 302  LKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSP-NTDLHS 360

Query: 1179 LVGAQQWDPQWGVYAQNLLADPTPMLLQGGVPQSNQGEVEDL--PIYPTRYHDG-LGWST 1349
            +V  Q   P WG YAQ LL DP   L +     SN G  +    PI+PT++  G   WS 
Sbjct: 361  IVQEQTAHPVWGTYAQRLL-DPEARLWRN---PSNGGHDDKAHPPIHPTKFSAGETNWSD 416

Query: 1350 DFKRVYGIVVRYFLASLSRTVWIRQSTAVLGMTNETLYARGEEVRGYFSYFDIFPFTSWK 1529
            + K++Y +VVR+FLA  S+     ++T  + +  E   A G  V    +Y D++ F SW 
Sbjct: 417  NHKKLYELVVRHFLACCSQPAVGAETTVEIDIAGEQFNASGRVVLSK-NYLDVYRFDSWG 475

Query: 1530 KSEIPKYYTGQMLTP-IWALVPGTTXXXXXXXXXXXXDYMIKEGTGTDSTMHIHVEKCLD 1706
             + +P Y  GQ   P    L  G T              M K G GTD+TMH H++K LD
Sbjct: 476  GTLLPTYTIGQQFIPTTLTLDSGVTRPPPLLAEADLLSCMDKAGIGTDATMHDHIKKLLD 535

Query: 1707 G-YATRDVNMLLTPTDLGQALVKGYHDMGYKLKQANLD--MEKDMQDIRTQTRRKADVLK 1877
              YAT+D N   +PT+LG+ALV GY +MGY+L +  L   ME DM+ +   T+ KA+VL+
Sbjct: 536  RCYATKDANTRFSPTNLGEALVMGYDEMGYELWKPYLRSMMEADMKSVSIGTKSKAEVLE 595

Query: 1878 DCLEQAETSYKEVTENRMALIQAGETFLGKKS----------NCVRRCSTCDESEMVLQT 2027
            +CL+Q +  + +   N++ L  A   F  + S            VR C+ C+ESEMVL+ 
Sbjct: 596  NCLQQMKACFLDARANKVKLFDAMGAFFARSSRPINETQNSIEAVRPCAACNESEMVLKR 655

Query: 2028 RDGGNFEVAC-ARANCKGVVKLPSCIETATVTDQVCEFCVPRKVFKIRFKFREGEIPRIY 2204
            R  G F V C     C+ VV LP  +  A+VTDQVC  C P  V+KI+FKFR  +IP  +
Sbjct: 656  RPTGEFMVGCRGFPQCRNVVWLPGSLSEASVTDQVCPTCAPGPVYKIQFKFRRRDIPPSF 715

Query: 2205 RSMHVGCI-VCDRLINQLKNLCGFGRSN 2285
               H+GCI  CD ++ +L  +  FG  N
Sbjct: 716  DVDHLGCIGGCDDILKELTEISRFGSHN 743


>ref|XP_006279975.1| hypothetical protein CARUB_v10025845mg [Capsella rubella]
            gi|482548679|gb|EOA12873.1| hypothetical protein
            CARUB_v10025845mg [Capsella rubella]
          Length = 919

 Score =  467 bits (1201), Expect = e-128
 Identities = 297/786 (37%), Positives = 423/786 (53%), Gaps = 35/786 (4%)
 Frame = +3

Query: 114  IRVLNVAEKPSAARKIVDVLSLEGRNLVRTVNQHGVEVFEFNDFPFRNRLCTMVVTSVSG 293
            + VLNVAEKPS A+ +  +LS  G    R       ++FEF D+    + C M++TSV G
Sbjct: 9    VTVLNVAEKPSVAKSVAGILS-RGSFRTREGRSRYNKIFEF-DYAINGQPCRMLMTSVIG 66

Query: 294  HLYQTEFDDSKFKRWNLHDPVDLFKAKIRKFVLPKNDKYEKTLKEKAVECDELFLWLDGN 473
            HL + EF D ++++W+  DP DL++A + K V       +KTL+E+A + D L LWLD +
Sbjct: 67   HLMELEFSD-RYRKWHSCDPADLYQAPVMKHVPEDKRDIKKTLEEEARKSDWLVLWLDCD 125

Query: 474  DEGEYIAWEVADVCASAKLGITVHRANFKALVDEDIKYAAQNPGVLNYNVIAAVDYRIEV 653
             EGE IA+EV DVC + K  + + RA+F AL+D +I  A QN    N     AVD R E+
Sbjct: 126  REGENIAFEVVDVCRAVKHNLFIRRAHFSALIDREIHEAVQNLRDPNQLFAEAVDARQEI 185

Query: 654  DFKIGCSYSRFNTILFQAAFGPLNRSG----KTLKFGTSLLPHLEFITNRYWDRIKHVPT 821
            D +IG S++RF T+L +  F  ++ +G    + + +G    P L FI  RYW+   H P 
Sbjct: 186  DLRIGASFTRFQTMLLRDRFA-IDSTGEERSRVISYGPCQFPTLGFIVERYWEIQAHEPE 244

Query: 822  KFWTLECTHTNDRGKITRFEYSRVHLHGRMPNHALATARLGE--YQQQTATVLEPCNKSL 995
            +FWT+ C+H ++ G I  F + R HL     ++A A   L E   ++ TATV+   +   
Sbjct: 245  EFWTINCSHQSEEG-IATFNWMRGHLF----DYASAVI-LYEMCVEEPTATVMNVPHPRE 298

Query: 996  RHVEPPSPLNTLELLKCASDYYGMSSALTMDVAEELYKLGVISYPRTPATSFDRIATDLP 1175
            R   PP PLNT+EL K AS Y+ +SS  TM VAEELY+ G ISYPRT   +F    TDL 
Sbjct: 299  RFKYPPYPLNTIELEKRASRYFRLSSEHTMKVAEELYQAGFISYPRTETDAFSS-RTDLR 357

Query: 1176 RLVGAQQWDPQWGVYAQNLLADPTPMLLQGGVPQSNQGEVEDLPIYPTRYHDG-LGWSTD 1352
             +V  Q   P+WG YAQ LL     +    G       +    PI+PT++  G   WS D
Sbjct: 358  AMVEEQTRHPEWGAYAQRLLEPEGGLWRNPG--NGGHDDKAHPPIHPTKFSSGESNWSRD 415

Query: 1353 FKRVYGIVVRYFLASLSRTVWIRQSTAVLGMTNETLYARGEEVRGYFSYFDIFPFTSWKK 1532
               VY +VVR++LA +S+     ++T  + ++ E   A G  +    +Y +++ F SW  
Sbjct: 416  HLNVYELVVRHYLACVSQPAVAAETTVEIDISGERFSASGRAILAK-NYLEVYRFESWGG 474

Query: 1533 SEIPKYYTGQMLTPI-WALVPGTTXXXXXXXXXXXXDYMIKEGTGTDSTMHIHVEKCLD- 1706
            S IP Y  GQ   P    L    T              M K G GTD+TMH H++K LD 
Sbjct: 475  SVIPVYEKGQQFIPTSLTLDSAVTRPPPLLCEADLLSCMDKAGIGTDATMHDHIKKLLDR 534

Query: 1707 GYATRDVNMLLTPTDLGQALVKGYHDMGYKLKQANLD--MEKDMQDIRTQTRRKADVLKD 1880
            GYAT+D N   +PT+LG+ALV GY DMGY+L + NL   ME DM ++    + KA+VL+ 
Sbjct: 535  GYATKDANTRFSPTNLGEALVMGYDDMGYELWKPNLRAIMEHDMNEVSVGRKTKAEVLET 594

Query: 1881 CLEQAETSYKEVTENRMALIQAGETFLGKKSN-----------CVRRCSTCDESEMVLQT 2027
            CL+Q +  + +    +  L++A   F  + +N            VRRC+ C+ES+M L+ 
Sbjct: 595  CLQQMKACFLDARVKKSKLLEAMTIFFERSNNTDEGENQTAGEVVRRCNLCNESDMALRK 654

Query: 2028 RDGGNFEVACAR-ANCKGVVKLPSCIETATVTDQVCEFCVPRKVFKIRFKFREGEIPRIY 2204
               GNF V C     C+  V LP     A+VT  VC+ C P  V+KI FKFR+  IP  +
Sbjct: 655  NRDGNFMVGCMNYPQCRNAVWLPGPTLEASVTTNVCQSCGPGPVYKILFKFRQIGIPPGF 714

Query: 2205 RSMHVGCI-VCDRLINQLKNLCGFG-RSNGWTREDS-PSGMV---------YCVKCKQSG 2348
               H+GC+  CD ++ QL ++CG G RS      D+ P   +          C+ C+Q G
Sbjct: 715  EVNHLGCVGGCDGILKQLIDICGTGSRSQARRAPDTVPPNNIRGSNTRQSNVCIHCQQRG 774

Query: 2349 HVFSEC 2366
            H  S C
Sbjct: 775  HASSNC 780


>ref|XP_002864876.1| hypothetical protein ARALYDRAFT_496584 [Arabidopsis lyrata subsp.
            lyrata] gi|297310711|gb|EFH41135.1| hypothetical protein
            ARALYDRAFT_496584 [Arabidopsis lyrata subsp. lyrata]
          Length = 923

 Score =  467 bits (1201), Expect = e-128
 Identities = 297/790 (37%), Positives = 424/790 (53%), Gaps = 35/790 (4%)
 Frame = +3

Query: 114  IRVLNVAEKPSAARKIVDVLSLEGRNLVRTVNQHGVEVFEFNDFPFRNRLCTMVVTSVSG 293
            + VLNVAEKPS A+ +  +LS  G    R       ++FEF D+    + C M++TSV G
Sbjct: 9    VTVLNVAEKPSVAKSVAGILS-RGTFRTREGRSRYNKIFEF-DYAINGQPCRMLMTSVIG 66

Query: 294  HLYQTEFDDSKFKRWNLHDPVDLFKAKIRKFVLPKNDKYEKTLKEKAVECDELFLWLDGN 473
            HL + EF + ++++W+  DP DL++A + K V       +KTL+E+A + D L LWLD +
Sbjct: 67   HLMELEFAN-RYRKWHSCDPADLYQAPVMKHVPEDKKDIKKTLEEEARKSDWLVLWLDCD 125

Query: 474  DEGEYIAWEVADVCASAKLGITVHRANFKALVDEDIKYAAQNPGVLNYNVIAAVDYRIEV 653
             EGE IA+EV DVC + K  + + RA+F AL+D DI  A QN    N     AVD R E+
Sbjct: 126  REGENIAFEVVDVCRAVKHNLFIRRAHFSALIDRDIHEAVQNLRDPNQLFAEAVDARQEI 185

Query: 654  DFKIGCSYSRFNTILFQAAFGPLNRSG----KTLKFGTSLLPHLEFITNRYWDRIKHVPT 821
            D +IG S++RF T+L +  F  ++ +G    + + +G    P L FI  RYW+   H P 
Sbjct: 186  DLRIGASFTRFQTMLLRDRFA-IDSTGEERSRVISYGPCQFPTLGFIVERYWEIQAHEPE 244

Query: 822  KFWTLECTHTNDRGKITRFEYSRVHLHGRMPNHALATARLGE--YQQQTATVLEPCNKSL 995
            +FWT+ C+H ++ G  T F + R HL     ++A A   L E   ++ TATV+   +   
Sbjct: 245  EFWTINCSHQSEEGLAT-FNWMRGHLF----DYASAVI-LYEMCVEEPTATVMNVPHPRE 298

Query: 996  RHVEPPSPLNTLELLKCASDYYGMSSALTMDVAEELYKLGVISYPRTPATSFDRIATDLP 1175
            R   PP PLNT+EL K AS Y+ +SS  TM VAEELY+ G ISYPRT   SF    TDL 
Sbjct: 299  RFKYPPYPLNTIELEKRASRYFRLSSEHTMKVAEELYQAGFISYPRTETDSFSS-RTDLC 357

Query: 1176 RLVGAQQWDPQWGVYAQNLLADPTPMLLQGGVPQSNQGEVEDLPIYPTRYHDG-LGWSTD 1352
             +V  Q+  P WG YAQ LL     +    G       +    PI+PT++  G   WS D
Sbjct: 358  AMVEEQRRHPAWGSYAQRLLEPEGGLWRNPG--NGGHDDKAHPPIHPTKFSSGESNWSRD 415

Query: 1353 FKRVYGIVVRYFLASLSRTVWIRQSTAVLGMTNETLYARGEEVRGYFSYFDIFPFTSWKK 1532
               VY +VVR++LA +S+     ++T  + +  E   A G  +    +Y +++ F SW  
Sbjct: 416  HLNVYELVVRHYLACVSQPAKAAETTVEIDIAGERFSASGRAILAK-NYLEVYRFESWGG 474

Query: 1533 SEIPKYYTGQMLTP-IWALVPGTTXXXXXXXXXXXXDYMIKEGTGTDSTMHIHVEKCLD- 1706
            S IP Y  GQ   P    L    T              M K G GTD+TMH H++K LD 
Sbjct: 475  SVIPVYEKGQQFIPTTLTLDSAVTRPPPLLCEADLLSCMDKAGIGTDATMHDHIKKLLDR 534

Query: 1707 GYATRDVNMLLTPTDLGQALVKGYHDMGYKLKQANLD--MEKDMQDIRTQTRRKADVLKD 1880
            GYAT+D N   +PT+LG+ALV GY DMGY+L + NL   ME+DM ++    + KA+VL+ 
Sbjct: 535  GYATKDANTRFSPTNLGEALVMGYDDMGYELWKPNLRALMERDMNEVSVGRKTKAEVLET 594

Query: 1881 CLEQAETSYKEVTENRMALIQAGETFLGKKSN-----------CVRRCSTCDESEMVLQT 2027
            CL+Q +  + +    +  L++A   F  + +N            +RRC+ C+ES+M L+ 
Sbjct: 595  CLQQMKACFLDARVKKSKLLEAMTIFFERSNNTDESESQTAGEVIRRCNLCNESDMALRK 654

Query: 2028 RDGGNFEVACAR-ANCKGVVKLPSCIETATVTDQVCEFCVPRKVFKIRFKFREGEIPRIY 2204
               GNF V C     C+  V LP     A+VT  VC+ C P  V+KI FKFR+  IP  +
Sbjct: 655  NRDGNFMVGCMNYPQCRNAVWLPGPTLEASVTTDVCQTCGPGPVYKILFKFRQIGIPPGF 714

Query: 2205 RSMHVGCI-VCDRLINQLKNLCGFGRSNGWTREDS--PSGMV---------YCVKCKQSG 2348
               H+GCI  CD ++ QL ++CG G  +   R     PS  +         +C+ C+Q G
Sbjct: 715  DVNHLGCIGGCDDILKQLIDICGTGSRSQARRAPGTVPSNNIQGSNTRQGNFCIHCQQRG 774

Query: 2349 HVFSECTQPA 2378
            H  + C   A
Sbjct: 775  HASANCPSRA 784


>ref|NP_001173278.1| Os03g0165000 [Oryza sativa Japonica Group]
            gi|255674230|dbj|BAH92006.1| Os03g0165000 [Oryza sativa
            Japonica Group]
          Length = 928

 Score =  466 bits (1200), Expect = e-128
 Identities = 296/745 (39%), Positives = 410/745 (55%), Gaps = 24/745 (3%)
 Frame = +3

Query: 114  IRVLNVAEKPSAARKIVDVLSL-EGRNLVRTVNQHGVEVFEFNDFPFRNRLCTMVVTSVS 290
            IRVLNVAEKPS A+ + ++LS   G    R        VFEF D+    R C M+VTSV+
Sbjct: 10   IRVLNVAEKPSVAKSVAEILSRPSGGMRSREGRSRYNRVFEF-DYSIGGRACHMLVTSVT 68

Query: 291  GHLYQTEFDDSKFKRWNLHDPVDLFKAKIRKFVLPKNDKYEKTLKEKAVECDELFLWLDG 470
            GHL + EFDD +F+RW+  DP DLF A +RK V       ++TL+E+A +C  L LWLD 
Sbjct: 69   GHLMELEFDD-RFRRWHSCDPADLFHAPVRKSVPQDKQDIKRTLEEEARKCQWLVLWLDC 127

Query: 471  NDEGEYIAWEVADVCASAKLGITVHRANFKALVDEDIKYAAQNPGVLNYNVIAAVDYRIE 650
            + EGE IA+EV D+CA A   + + RA F AL+D +I  A Q+    N     AVD R E
Sbjct: 128  DREGENIAYEVIDICAGANSRLNIWRARFSALIDREIHEAVQHLDRPNKLFADAVDARQE 187

Query: 651  VDFKIGCSYSRFNTILFQAAFGPLNRSGK----TLKFGTSLLPHLEFITNRYWDRIKHVP 818
            +D +IG S++RF T+L + AF  L+ +G      L +G    P L FI  R+W+   H P
Sbjct: 188  IDLRIGASFTRFQTMLLKDAF-VLDDTGDDRNIILSYGPCQFPTLGFIVERFWEIQAHEP 246

Query: 819  TKFWTLECTHTNDRGKITRFEYSRVHLHGRMPNHALATARLGEYQQQTATVLEPCNKSLR 998
             +FWT+ C+HT+D G  + F + R HL     +++ A        ++    ++      +
Sbjct: 247  EEFWTINCSHTSDEGTAS-FGWIRGHLF----DYSSAVVIYEMCVEEPMATVQNVRNQEK 301

Query: 999  HVEPPSPLNTLELLKCASDYYGMSSALTMDVAEELYKLGVISYPRTPATSFDRIATDLPR 1178
               PP PL+T+EL K AS Y+ MSS  TM VAEELY+ G ISYPRT   +F    TDL  
Sbjct: 302  LKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSP-NTDLHS 360

Query: 1179 LVGAQQWDPQWGVYAQNLLADPTPMLLQGGVPQSNQGEVEDL--PIYPTRYHDG-LGWST 1349
            +V  Q   P WG YAQ LL DP   L +     SN G  +    PI+PT++  G   W+ 
Sbjct: 361  IVHEQVAHPNWGTYAQRLL-DPEARLWRN---PSNGGHDDKAHPPIHPTKFSAGETNWTD 416

Query: 1350 DFKRVYGIVVRYFLASLSRTVWIRQSTAVLGMTNETLYARGEEVRGYFSYFDIFPFTSWK 1529
            + K++Y +VVR+FLA  S+     ++T  + +  E   A G  V    +Y D++ F SW 
Sbjct: 417  NHKKLYELVVRHFLACCSQPAVGAETTVEIDIAGEQFNASGRVVLAK-NYLDVYRFDSWG 475

Query: 1530 KSEIPKYYTGQMLTP-IWALVPGTTXXXXXXXXXXXXDYMIKEGTGTDSTMHIHVEKCLD 1706
             + +P Y  GQ   P    L  G T              M K G GTD+TMH H++K LD
Sbjct: 476  GTLLPTYIIGQQFVPTTLTLDSGMTRPPPLLAEADLLGCMDKAGIGTDATMHDHIKKLLD 535

Query: 1707 G-YATRDVNMLLTPTDLGQALVKGYHDMGYKLKQANLD--MEKDMQDIRTQTRRKADVLK 1877
              YAT+D N   +PT+LG+ALV GY +MGY+L +  L   ME DM+ +   T+ K++VL+
Sbjct: 536  RCYATKDANTRFSPTNLGEALVMGYDEMGYELWKPYLRSMMEADMKSVSIGTKSKSEVLE 595

Query: 1878 DCLEQAETSYKEVTENRMALIQAGETFLGKKS----------NCVRRCSTCDESEMVLQT 2027
            +CL+Q +  + +   N++ L  A  TF  + S            VR C+ C+ESEM L+ 
Sbjct: 596  NCLQQMKACFLDARANKVKLFDAMGTFFARSSRPVNETQNSIETVRPCAACNESEMFLKQ 655

Query: 2028 RDGGNFEVAC-ARANCKGVVKLPSCIETATVTDQVCEFCVPRKVFKIRFKFREGEIPRIY 2204
            R  G F V C     C+ VV LP  +  A VTDQVC  C P  V+KI+FKFR  +IP  +
Sbjct: 656  RPTGEFMVGCRGFPQCRNVVWLPRSLSGAAVTDQVCPTCAPGPVYKIQFKFRRRDIPPNF 715

Query: 2205 RSMHVGCI-VCDRLINQLKNLCGFG 2276
               H+GCI  CD ++ +L  L  FG
Sbjct: 716  DVDHLGCIGGCDDILKELMELSRFG 740


>gb|EYU20574.1| hypothetical protein MIMGU_mgv1a000984mg [Mimulus guttatus]
          Length = 923

 Score =  466 bits (1199), Expect = e-128
 Identities = 297/752 (39%), Positives = 408/752 (54%), Gaps = 31/752 (4%)
 Frame = +3

Query: 114  IRVLNVAEKPSAARKIVDVLSLE---GRNLVRTVNQHGVEVFEFNDFPFRNRLCTMVVTS 284
            +R LNVAEKPS A+ +  +LS     G   VR       ++FEFN +  +N+   M  TS
Sbjct: 9    LRALNVAEKPSVAKAVSGILSKNPSSGGLRVREGRSRYNKIFEFN-YAIQNQQFQMSFTS 67

Query: 285  VSGHLYQTEFDDSKFKRWNLHDPVDLFKAKIRKFVLPKNDKYEKTLKEKAVECDELFLWL 464
            V+GHL + EF+D ++++W+  DPVDL+ A +RK V       EKTL+E+A +C  L LWL
Sbjct: 68   VTGHLMELEFED-RYRKWHSCDPVDLYHAPVRKHVPQDKSDIEKTLEEEARKCQWLILWL 126

Query: 465  DGNDEGEYIAWEVADVCASAKLGITVHRANFKALVDEDIKYAAQNPGVLNYNVIAAVDYR 644
            D + EGE IA+EV + C      + + RA F AL+D +I  A Q+    N     AVD R
Sbjct: 127  DCDREGENIAFEVVEACLRTNRNLNIWRARFSALIDREIHDAVQHLVRPNQLFADAVDVR 186

Query: 645  IEVDFKIGCSYSRFNTILFQAAF---GPLNRSGKTLKFGTSLLPHLEFITNRYWDRIKHV 815
             E+D +IG S++RF T+L + AF            L +G    P L F+  R+W+   H 
Sbjct: 187  QEIDLRIGASFTRFQTMLLKDAFVLDFATEERNVILSYGPCQFPTLGFVVERFWEIQSHE 246

Query: 816  PTKFWTLECTHTNDRGKITRFEYSRVHLHGRMPNHALATARLGEYQQQTATVLEPCNKSL 995
            P +FWT+ CTH ++ G  T F + R HL     ++  AT     Y+     VLEP N ++
Sbjct: 247  PEEFWTINCTHNSEEGTAT-FSWMRGHLF----DYTCATI---IYEM---CVLEP-NATV 294

Query: 996  RHVE-------PPSPLNTLELLKCASDYYGMSSALTMDVAEELYKLGVISYPRTPATSFD 1154
             +V        PP PL+T+EL K AS Y+ MSS  TM VAE+LY+ G ISYPRT   SF 
Sbjct: 295  TNVRNQEKPRYPPHPLSTIELEKRASRYFRMSSEQTMKVAEDLYQAGFISYPRTETDSFS 354

Query: 1155 RIATDLPRLVGAQQWDPQWGVYAQNLLADPTPMLLQGGVPQSNQGEVEDLPIYPTRYHDG 1334
             + TDL  +V  QQ  P WG YAQ LL DP   L +      +  +    PI+PT++  G
Sbjct: 355  -VRTDLHTIVQEQQGHPTWGSYAQRLL-DPEAGLWRNPSSGGHDDKAHP-PIHPTKFSAG 411

Query: 1335 -LGWSTDFKRVYGIVVRYFLASLSRTVWIRQSTAVLGMTNETLYARGEEVRGYFSYFDIF 1511
              GWS D  +VY +VVR+FLA +S+      +T  + +  E   A G  +    +Y D++
Sbjct: 412  ESGWSQDHHKVYELVVRHFLACVSQPAIGAVTTVDIDIAGEQFSASGTVILAK-NYLDVY 470

Query: 1512 PFTSWKKSEIPKYYTGQMLTP-IWALVPGTTXXXXXXXXXXXXDYMIKEGTGTDSTMHIH 1688
             F +W  S IP Y  GQ  TP    L  G T              M   G GTD+TMH H
Sbjct: 471  RFETWGGSMIPTYNYGQQFTPTTLTLDSGVTRPPPLLSEADLLSCMDNAGIGTDATMHDH 530

Query: 1689 VEKCLDG-YATRDVNMLLTPTDLGQALVKGYHDMGYKLKQANLD--MEKDMQDIRTQTRR 1859
            ++K LD  YAT+D NM  +PT LG+ALVKGY DMGY+L + NL   ME DM+ +   T+R
Sbjct: 531  IKKLLDRFYATKDSNMRFSPTKLGEALVKGYDDMGYELWKPNLRAMMESDMKAVSMGTKR 590

Query: 1860 KADVLKDCLEQAETSYKEVTENRMALIQAGETFLGKKSNC-----------VRRCSTCDE 2006
            K++VL  CL+Q +  + +   N+  L +A + F  + +             VR+C  C E
Sbjct: 591  KSEVLDSCLQQMKACFVDARLNKEKLFEAMDVFFERSNRANGNEQQAIGEVVRKCGLCQE 650

Query: 2007 SEMVLQTRDGGNFEVAC-ARANCKGVVKLPSCIETATVTDQVCEFCVPRKVFKIRFKFRE 2183
            S+MVL+ +  GNF V C     C+ VV LP  +  ATVT  +C  C P  V+ I+FKFR 
Sbjct: 651  SDMVLRKKPDGNFMVGCLGYPQCRNVVWLPGSVSEATVTTTICSTCSPGPVYMIQFKFRR 710

Query: 2184 GEIPRIYRSMHVGCI-VCDRLINQLKNLCGFG 2276
             EIP  Y   H+GCI  CD  + QL  +CG G
Sbjct: 711  LEIPPNYNVDHLGCIGGCDDTLRQLVEICGTG 742


>ref|NP_201197.1| topoisomerase 3alpha [Arabidopsis thaliana]
            gi|8777305|dbj|BAA96895.1| DNA topoisomerase III
            [Arabidopsis thaliana] gi|169218912|gb|ACA50279.1|
            topoisomerase 3 alpha [Arabidopsis thaliana]
            gi|332010433|gb|AED97816.1| topoisomerase 3alpha
            [Arabidopsis thaliana]
          Length = 926

 Score =  466 bits (1198), Expect = e-128
 Identities = 298/786 (37%), Positives = 424/786 (53%), Gaps = 35/786 (4%)
 Frame = +3

Query: 114  IRVLNVAEKPSAARKIVDVLSLEGRNLVRTVNQHGVEVFEFNDFPFRNRLCTMVVTSVSG 293
            + VLNVAEKPS A+ +  +LS  G    R       ++FEF D+    + C M++TSV G
Sbjct: 9    VTVLNVAEKPSVAKSVAGILS-RGTFRTREGRSRYNKIFEF-DYAINGQPCRMLMTSVIG 66

Query: 294  HLYQTEFDDSKFKRWNLHDPVDLFKAKIRKFVLPKNDKYEKTLKEKAVECDELFLWLDGN 473
            HL + EF D ++++W+  DP DL++A + K V       +KTL+E+A + D L LWLD +
Sbjct: 67   HLMELEFAD-RYRKWHSCDPADLYQAPVMKHVPEDKKDIKKTLEEEARKSDWLVLWLDCD 125

Query: 474  DEGEYIAWEVADVCASAKLGITVHRANFKALVDEDIKYAAQNPGVLNYNVIAAVDYRIEV 653
             EGE IA+EV DVC + K  + + RA+F AL+D DI  A QN    N     AVD R E+
Sbjct: 126  REGENIAFEVVDVCRAVKHNLFIRRAHFSALIDRDIHEAVQNLRDPNQLFAEAVDARQEI 185

Query: 654  DFKIGCSYSRFNTILFQAAFGPLNRSG----KTLKFGTSLLPHLEFITNRYWDRIKHVPT 821
            D +IG S++RF T+L +  F  ++ +G    + + +G    P L FI  RYW+   H P 
Sbjct: 186  DLRIGASFTRFQTMLLRDRFA-IDSTGEERSRVISYGPCQFPTLGFIVERYWEIQAHEPE 244

Query: 822  KFWTLECTHTNDRGKITRFEYSRVHLHGRMPNHALATARLGE--YQQQTATVLEPCNKSL 995
            +FWT+ C+H ++ G  T F + R HL     ++A A   L E   ++ TATV+   +   
Sbjct: 245  EFWTINCSHQSEEGLAT-FNWMRGHLF----DYASAVI-LYEMCVEEPTATVMNVPHPRE 298

Query: 996  RHVEPPSPLNTLELLKCASDYYGMSSALTMDVAEELYKLGVISYPRTPATSFDRIATDLP 1175
            R   PP PLNT+EL K AS Y+ +SS  TM VAEELY+ G ISYPRT   SF    TDL 
Sbjct: 299  RFKYPPYPLNTIELEKRASRYFRLSSEHTMKVAEELYQAGFISYPRTETDSFSS-RTDLR 357

Query: 1176 RLVGAQQWDPQWGVYAQNLLADPTPMLLQGGVPQSNQGEVEDLPIYPTRYHDG-LGWSTD 1352
             +V  Q   P WG YAQ LL +P   L +      +  +    PI+PT++  G   WS D
Sbjct: 358  AMVEEQTRHPAWGSYAQRLL-EPEGGLWRNPANGGHDDKAHP-PIHPTKFSSGESNWSRD 415

Query: 1353 FKRVYGIVVRYFLASLSRTVWIRQSTAVLGMTNETLYARGEEVRGYFSYFDIFPFTSWKK 1532
               VY +VVR++LA +S+     ++T  + +  E   A G  +    +Y +++ F SW  
Sbjct: 416  HLNVYELVVRHYLACVSQPAVAAETTVEIDIAGERFSASGRAILAK-NYLEVYRFESWGG 474

Query: 1533 SEIPKYYTGQMLTP-IWALVPGTTXXXXXXXXXXXXDYMIKEGTGTDSTMHIHVEKCLD- 1706
            S IP Y  GQ   P    L    T              M K G GTD+TMH H++K LD 
Sbjct: 475  SVIPVYEKGQQFIPTTLTLDAAVTRPPPLLCEADLLSCMDKAGIGTDATMHDHIKKLLDR 534

Query: 1707 GYATRDVNMLLTPTDLGQALVKGYHDMGYKLKQANLD--MEKDMQDIRTQTRRKADVLKD 1880
            GYAT+D N   +PT+LG+ALV GY DMGY+L + NL   ME DM ++    + KA+VL+ 
Sbjct: 535  GYATKDANTRFSPTNLGEALVMGYDDMGYELWKPNLRALMEHDMNEVSVGRKTKAEVLET 594

Query: 1881 CLEQAETSYKEVTENRMALIQAGETFLGKKSN-----------CVRRCSTCDESEMVLQT 2027
            CL+Q +  + +    +  L++A   F  + +N            VRRC+ C+ES+M L+ 
Sbjct: 595  CLQQMKACFLDARVKKSKLLEAMTIFFERSNNTDESESQTAGEVVRRCNLCNESDMALRK 654

Query: 2028 RDGGNFEVACAR-ANCKGVVKLPSCIETATVTDQVCEFCVPRKVFKIRFKFREGEIPRIY 2204
               GNF V C     C+  V LP     A+VT  VC+ C P  V+KI FKFR+  IP  +
Sbjct: 655  NRDGNFMVGCMNYPQCRNAVWLPGPTLEASVTTNVCQSCGPGPVYKILFKFRQIGIPPGF 714

Query: 2205 RSMHVGCI-VCDRLINQLKNLCGFGRSNGWTRE--DSPSGMV---------YCVKCKQSG 2348
               H+GC+  CD ++ QL ++CG G  +   R    +PS  +          C+ C+Q G
Sbjct: 715  DVNHLGCVGGCDDILKQLIDICGTGSRSQARRTPGTAPSNNIQGSNTRQSNVCIHCQQRG 774

Query: 2349 HVFSEC 2366
            H  + C
Sbjct: 775  HASTNC 780


>ref|XP_003526873.1| PREDICTED: DNA topoisomerase 3-alpha isoform X1 [Glycine max]
            gi|571460704|ref|XP_006581776.1| PREDICTED: DNA
            topoisomerase 3-alpha isoform X2 [Glycine max]
          Length = 913

 Score =  465 bits (1197), Expect = e-128
 Identities = 296/791 (37%), Positives = 423/791 (53%), Gaps = 40/791 (5%)
 Frame = +3

Query: 114  IRVLNVAEKPSAARKIVDVLSLEGRNLVRTVNQHGVEVFEFNDFPFRNRLCTMVVTSVSG 293
            + VLNVAEKP  AR +  +LS      +R       ++FEFN +  R + C M+ TSV+G
Sbjct: 1    MNVLNVAEKPMVARTVATILSRNQNMRMREGRSRYNKIFEFN-YTIRGQPCHMIFTSVTG 59

Query: 294  HLYQTEFDDSKFKRWNLHDPVDLFKAKIRKFVLPKNDKYEKTLKEKAVECDELFLWLDGN 473
            HL + EFDD ++++W+  DP DLF+A + KFV       ++TL+E+A  C  L LWLD +
Sbjct: 60   HLMELEFDD-RYRKWHSCDPADLFRAPVHKFVPEDKKDIKRTLEEEARRCQWLILWLDCD 118

Query: 474  DEGEYIAWEVADVCASAKLGITVHRANFKALVDEDIKYAAQNP-GVLNYNVIAAVDYRIE 650
             EGE IA+EV DVC +    +T+ RA F  L+D DI  AAQN     +  V  AVD R E
Sbjct: 119  VEGENIAYEVIDVCTAVNPHLTIKRAWFSTLIDRDIHNAAQNDLRDPDKRVADAVDVRQE 178

Query: 651  VDFKIGCSYSRFNTILFQAAF---GPLNRSGKTLKFGTSLLPHLEFITNRYWDRIKHVPT 821
            +D +IG S++RF T+L + AF      +   + L +G    P L F+  R+W+   H P 
Sbjct: 179  IDLRIGASFTRFQTMLMKDAFIIDTATDDRNRVLSYGPCQFPTLGFVVERFWEIQAHEPE 238

Query: 822  KFWTLECTHTNDRGKITRFEYSRVHLHGRMPNHALATARLGEYQQQTATVLEPCNKSLRH 1001
            +FW++ C+H +  G    F + R    GR+ ++  A        ++    +    +  + 
Sbjct: 239  EFWSIICSHESKEG-TAEFSWMR----GRLFDYTCAVIIYEMCVEEPTATVTNIRQQEKP 293

Query: 1002 VEPPSPLNTLELLKCASDYYGMSSALTMDVAEELYKLGVISYPRTPATSFDRIATDLPRL 1181
              PP PLNT+EL K AS Y+ MSS  TM VAEELY+ G ISYPRT   SF    TDL  +
Sbjct: 294  KYPPFPLNTIELQKRASRYFRMSSDHTMKVAEELYQAGFISYPRTETDSFSP-GTDLHTI 352

Query: 1182 VGAQQWDPQWGVYAQNLLADPTPMLLQGGVPQSNQGEVED----LPIYPTRYHDG-LGWS 1346
            V  QQ  P+WG+YAQ L+ DP     + G+ ++ +G   D     PIYPT++  G  GWS
Sbjct: 353  VQEQQGHPEWGIYAQRLM-DP-----EAGLWRNPRGGGHDDKAHPPIYPTKFSTGESGWS 406

Query: 1347 TDFKRVYGIVVRYFLASLSRTVWIRQSTAVLGMTNETLYARGEEVRGYFSYFDIFPFTSW 1526
             D +++Y +VVR+FLA +S+     ++T  + +  E   A G  +    +Y D++ + SW
Sbjct: 407  QDHRKLYELVVRHFLACVSKPALGAETTVEINIAGELFSACGRVILEK-NYLDVYRYESW 465

Query: 1527 KKSEIPKYYTGQMLTPI-WALVPGTTXXXXXXXXXXXXDYMIKEGT--GTDSTMHIHVEK 1697
              S IP Y  GQ   P    L  G T             YM +E    GTD+TM  H++K
Sbjct: 466  GGSMIPTYTNGQQFNPTKLTLESGVTRPPPLLSEADLLSYMDREEAKIGTDATMQDHIKK 525

Query: 1698 CLD-GYATRDVNMLLTPTDLGQALVKGYH--DMGYKLKQANL--DMEKDMQDIRTQTRRK 1862
             LD  YAT+D +   TPT+LG+ALV GY   DM YKL + +L  +MEK M D++   + K
Sbjct: 526  MLDRSYATKDSSTRFTPTNLGEALVLGYDDIDMTYKLWKPDLRSEMEKKMDDVKKGDKSK 585

Query: 1863 ADVLKDCLEQAETSYKEVTENRMALIQAGETFLGKKS-----------NCVRRCSTCDES 2009
            A+VL   L++ E  + E   N++ L++A   F  + +             VRRC  C ES
Sbjct: 586  AEVLVTILQKMEACFLEARLNKVKLLEAMAIFFERSTRSSSDELHATGEVVRRCGLCQES 645

Query: 2010 EMVLQTRDGGNFEVAC-ARANCKGVVKLPSCIETATVTDQVCEFCVPRKVFKIRFKFREG 2186
            +M+L+    GNF V C     C+  V LP  +  A VT   C FC P  V+ I+FKFR  
Sbjct: 646  DMLLRKNRDGNFMVGCMGYPQCRNAVWLPGSVSEAVVTTNTCNFCTPGPVYLIQFKFRRL 705

Query: 2187 EIPRIYRSMHVGCI-VCDRLINQLKNLCGFG-----RSNGWTREDSPSGMV-----YCVK 2333
            EIP  Y   H+GCI  CD ++ QL  +CG G     R  G T   S +         C+ 
Sbjct: 706  EIPPNYSPNHLGCIGGCDEILAQLTEICGRGPRMPARPRGPTAPTSNAHHTNPRQGACMN 765

Query: 2334 CKQSGHVFSEC 2366
            C+++GH  ++C
Sbjct: 766  CRETGHSSTDC 776


>ref|XP_002465810.1| hypothetical protein SORBIDRAFT_01g046210 [Sorghum bicolor]
            gi|241919664|gb|EER92808.1| hypothetical protein
            SORBIDRAFT_01g046210 [Sorghum bicolor]
          Length = 860

 Score =  464 bits (1195), Expect = e-128
 Identities = 294/764 (38%), Positives = 416/764 (54%), Gaps = 23/764 (3%)
 Frame = +3

Query: 114  IRVLNVAEKPSAARKIVDVLSLEGRNLVRTVNQHGVEVFEFNDFPFRNRLCTMVVTSVSG 293
            IRVLNVAEKPS A+ + ++LS          +Q+   +FEFN +    R C M+VTSV+G
Sbjct: 9    IRVLNVAEKPSVAKAVAEILSRRSMQSRAGRSQYN-RIFEFN-YAINGRACHMLVTSVTG 66

Query: 294  HLYQTEFDDSKFKRWNLHDPVDLFKAKIRKFVLPKNDKYEKTLKEKAVECDELFLWLDGN 473
            HL + EFD+ +F+RW+  DP +LF A +RK V       ++TL+E+A  C  L LWLD +
Sbjct: 67   HLMELEFDE-RFRRWHSCDPAELFHAPVRKSVPQDKQAIKQTLEEEARRCQWLVLWLDCD 125

Query: 474  DEGEYIAWEVADVCASAKLGITVHRANFKALVDEDIKYAAQNPGVLNYNVIAAVDYRIEV 653
             EGE IA+EV DVC  A   + + RA F AL+D +I  + Q+ G  N     AVD R E+
Sbjct: 126  REGENIAYEVIDVCTGANSHLNIWRARFSALIDREIHESVQHLGRPNKLFADAVDARQEI 185

Query: 654  DFKIGCSYSRFNTILFQAAFGPLNRSGK----TLKFGTSLLPHLEFITNRYWDRIKHVPT 821
            D +IG S++RF T+L + AF  +N +G      L +G    P L FI  R+W+   H P 
Sbjct: 186  DLRIGASFTRFQTMLLKDAF-VINVTGDDRNLVLSYGPCQFPTLGFIVERFWEIQAHEPE 244

Query: 822  KFWTLECTHTNDRGKITRFEYSRVHLHGRMPNHALATARLGEYQQQTATVLEPCNKSLRH 1001
            +FWT+ CTHT+D G  + F + R HL     +++ A +       +    ++      + 
Sbjct: 245  EFWTINCTHTSDEGTAS-FGWIRGHLF----DYSCAISIYEMCVSEPMATVQNVRNQEKL 299

Query: 1002 VEPPSPLNTLELLKCASDYYGMSSALTMDVAEELYKLGVISYPRTPATSFDRIATDLPRL 1181
              PP PL+T+EL K AS Y+ MSS  TM VAEELY+ G ISYPRT   +F    TDL  +
Sbjct: 300  KYPPYPLSTVELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSP-NTDLHAI 358

Query: 1182 VGAQQWDPQWGVYAQNLLADPTPMLLQGGVPQSNQGEVEDL--PIYPTRYHDG-LGWSTD 1352
            V  Q   P WG YAQ LL +P   L +     SN G  +    PI+PT++ +G   WS D
Sbjct: 359  VREQVNHPVWGAYAQRLL-NPEARLWRN---PSNGGHDDKAHPPIHPTKFSEGERNWSPD 414

Query: 1353 FKRVYGIVVRYFLASLSRTVWIRQSTAVLGMTNETLYARGEEVRGYFSYFDIFPFTSWKK 1532
              R+Y +VVR+FLA  S+     ++T  + +  E   A G  +    +Y D++ F SW  
Sbjct: 415  HIRLYELVVRHFLACCSQPAVGAETTVEIDIAGEQFNASGRVILAK-NYLDVYRFDSWGG 473

Query: 1533 SEIPKYYTGQMLTP-IWALVPGTTXXXXXXXXXXXXDYMIKEGTGTDSTMHIHVEKCLDG 1709
            + +P Y  GQ   P    L  G T              M K G GTD+TMH H++K LD 
Sbjct: 474  TLLPTYNIGQQFVPTTLTLDSGVTRPPPLLAEADLLSCMDKAGIGTDATMHDHIKKLLDR 533

Query: 1710 -YATRDVNMLLTPTDLGQALVKGYHDMGYKLKQANLD--MEKDMQDIRTQTRRKADVLKD 1880
             YAT+D N   +PT+LG+ALV GY +MGY+L +  L   ME DM+ +   T+ K++VL+ 
Sbjct: 534  CYATKDENTRFSPTNLGEALVMGYDEMGYELWKPYLRSMMEADMKSVSMGTKSKSEVLES 593

Query: 1881 CLEQAETSYKEVTENRMALIQAGETFLGKKS----------NCVRRCSTCDESEMVLQTR 2030
            CL+Q +  + +   N+  L+ A  TF  + +            VR C  C+ SEMVL+ R
Sbjct: 594  CLQQMKACFLDARVNKAKLLDAMGTFFARSNRPINETQNPVEVVRPCGACNGSEMVLKRR 653

Query: 2031 DGGNFEVAC-ARANCKGVVKLPSCIETATVTDQVCEFCVPRKVFKIRFKFREGEIPRIYR 2207
              G F V C +   C+ VV LP  +  A VT+QVC  C P  V+KI+FKFR  +IP  + 
Sbjct: 654  VTGEFMVGCRSYPQCRNVVWLPGSLSEAAVTNQVCPICAPGPVYKIQFKFRRRDIPPNFD 713

Query: 2208 SMHVGCI-VCDRLINQLKNLCGFGRSNGWTREDSPSGMVYCVKC 2336
              H+GC+  CD ++ +L  L  FG  +    + +  G V C  C
Sbjct: 714  VDHLGCVGGCDDILKELMELSRFGSRS----QAATPGQVLCTSC 753


>ref|XP_004985595.1| PREDICTED: DNA topoisomerase 3-alpha-like [Setaria italica]
          Length = 917

 Score =  464 bits (1193), Expect = e-127
 Identities = 304/761 (39%), Positives = 417/761 (54%), Gaps = 26/761 (3%)
 Frame = +3

Query: 114  IRVLNVAEKPSAARKIVDVLSLEGRNLVRTVNQHGVEVFEFNDFPFRNRLCTMVVTSVSG 293
            IRVLNVAEKPS A+ + ++LS  G    R        VFEFN +    R C M+VTSV+G
Sbjct: 10   IRVLNVAEKPSVAKAVAEILS-RGSMQSRAGRSPYNRVFEFN-YAINGRACRMLVTSVTG 67

Query: 294  HLYQTEFDDSKFKRWNLHDPVDLFKAKIRKFVLPKNDKYEKTLKEKAVECDELFLWLDGN 473
            HL + EFDD +F+RW+  DP DLF A +RK V       ++TL+E+A  C  L LWLD +
Sbjct: 68   HLMELEFDD-RFRRWHSCDPADLFHAPVRKSVPQDKQAIKQTLEEEARRCQWLVLWLDCD 126

Query: 474  DEGEYIAWEVADVCASAKLGITVHRANFKALVDEDIKYAAQNPGVLNYNVIAAVDYRIEV 653
             EGE IA+EV +VC  A   + + RA F AL+D +I  + Q+ G  N     AVD R E+
Sbjct: 127  REGENIAYEVIEVCTGANSHLNIWRARFSALIDREIHESVQHLGRPNKLFADAVDARQEI 186

Query: 654  DFKIGCSYSRFNTILFQAAFGPLNRSGK----TLKFGTSLLPHLEFITNRYWDRIKHVPT 821
            D +IG S++RF T+L + AF  ++ +G      L +G    P L FI  R+W+   H P 
Sbjct: 187  DLRIGASFTRFQTMLLKDAF-VIDVTGDDRNLVLSYGPCQFPTLGFIVERFWEIQAHEPE 245

Query: 822  KFWTLECTHTNDRGKITRFEYSRVHLHGRMPNHALATARLGEYQQQTATVLEPCNKSLRH 1001
            +FWT+ CTHT+D G  + F + R HL    P+  +      E  +  ATV    N+  + 
Sbjct: 246  EFWTINCTHTSDEGTAS-FGWIRGHLFD-YPSAVILYEMCVE--EPMATVQNVRNQE-KL 300

Query: 1002 VEPPSPLNTLELLKCASDYYGMSSALTMDVAEELYKLGVISYPRTPATSFDRIATDLPRL 1181
              PP PL+TLEL K AS Y+ MSS  TM VAEELY+ G ISYPRT   +F    TDL  +
Sbjct: 301  KYPPYPLSTLELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSP-NTDLHAI 359

Query: 1182 VGAQQWDPQWGVYAQNLLADPTPMLLQGGVPQSNQGEVEDL--PIYPTRYHDG-LGWSTD 1352
            V  Q   P WG YA  LL  P   L +     SN G  +    PI+PT++  G   WS D
Sbjct: 360  VREQVEHPVWGAYAHRLLT-PEERLWRN---PSNGGHDDKAHPPIHPTKFSRGENNWSPD 415

Query: 1353 FKRVYGIVVRYFLASLSRTVWIRQSTAVLGMTNETLYARGEEVRGYFSYFDIFPFTSWKK 1532
              R+Y +VVR+FLA  S+     ++T  + +  E   A G  V    +Y D++ F SW  
Sbjct: 416  HNRLYELVVRHFLACCSQPAVGAETTVEIDIAGEQFNASGRVVLAK-NYLDVYRFDSWGG 474

Query: 1533 SEIPKYYTGQMLTP-IWALVPGTTXXXXXXXXXXXXDYMIKEGTGTDSTMHIHVEKCLDG 1709
            + +P Y  GQ   P    L  G T              M K G GTD+TMH H++K LD 
Sbjct: 475  TLLPTYNIGQQFVPTTLTLDSGVTRPPPLLAEADLLSCMDKAGIGTDATMHDHIKKLLDR 534

Query: 1710 -YATRDVNMLLTPTDLGQALVKGYHDMGYKLKQANLD--MEKDMQDIRTQTRRKADVLKD 1880
             YAT+D N   +PT+LG+ALV GY +MGY+L +  L   ME DM+ +   T+ K+ VL+ 
Sbjct: 535  CYATKDENTRFSPTNLGEALVMGYDEMGYELWKPYLRSMMEADMKSVSIGTKSKSQVLES 594

Query: 1881 CLEQAETSYKEVTENRMALIQAGETFLGKKS----------NCVRRCSTCDESEMVLQTR 2030
            CL+Q +  + +   N+  L+ A  TF  + +            VR C+ C ESEMVL+ +
Sbjct: 595  CLQQMKACFLDARVNKAKLLDAMGTFFARSNRPVNETQNPIEVVRPCAACRESEMVLKQK 654

Query: 2031 DGGNFEVAC-ARANCKGVVKLPSCIETATVTDQVCEFCVPRKVFKIRFKFREGEIPRIYR 2207
              G F V C +   C+ VV LP  +  A+VT+QVC  C P  V+KI+FKFR  +IP  + 
Sbjct: 655  QNGEFMVGCRSYPQCRNVVWLPGSLSEASVTNQVCPICTPGPVYKIQFKFRRRDIPPNFD 714

Query: 2208 SMHVGCI-VCDRLINQLKNLCGFG-RSNGWT--REDSPSGM 2318
              H+GCI  CD ++ +L  +  FG RS   T  R  +P+G+
Sbjct: 715  VDHLGCIGGCDDILKELTEISRFGSRSQAATPARGQTPNGV 755