BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver25_contig00026939
         (1262 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...   489   e-136
emb|CBI16226.3| unnamed protein product [Vitis vinifera]              485   e-134
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s...   473   e-131
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr...   473   e-131
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...   472   e-130
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu...   468   e-129
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo...   467   e-129
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g...   467   e-129
gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Mor...   466   e-128
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s...   464   e-128
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s...   461   e-127
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S...   461   e-127
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s...   453   e-125
ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao...   451   e-124
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s...   450   e-124
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s...   443   e-122
ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi...   443   e-122
ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Sela...   442   e-121
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [...   440   e-121
gb|EYU39043.1| hypothetical protein MIMGU_mgv1a000232mg [Mimulus...   437   e-120

>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score =  489 bits (1260), Expect = e-136
 Identities = 260/375 (69%), Positives = 303/375 (80%)
 Frame = -3

Query: 1260 QQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVP 1081
            +QLQVFL+TCISRY LKR                EPGTQMTLKTFHFAGVASMNVTLGVP
Sbjct: 1014 KQLQVFLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVP 1073

Query: 1080 RIKEIINGAKNISTPIITATLECKNDAKSARIVQDCIEKTVLGEIAESMKIIFTSRKACI 901
            RIKEIINGAK ISTPIITA LEC N+ K+AR+V+  IE+T LG++A+S+KI+ TSR A I
Sbjct: 1074 RIKEIINGAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSRLALI 1133

Query: 900  LVTLDIELIQHSQLKISAHSVQQSIWRHPKAKLKAQHVEVLDDRKLRIHAPVDDRTKIHF 721
             V LD+E IQ SQL I ++ V++SI R+ + KLK QH++VLD  KL +H P  DR+ IHF
Sbjct: 1134 AVALDMEGIQASQLSIDSNIVRESILRNRRIKLKQQHIKVLDAGKLEVH-PQGDRSTIHF 1192

Query: 720  ELHSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHNLLVEGTNLRAVMGTLGVDGC 541
            ELH+LK++LP V+V GI TVERA+INK  D + K    +NLLVEGT L+ VMGT GV G 
Sbjct: 1193 ELHALKNLLPTVVVKGIETVERAVINK--DNKVK----YNLLVEGTGLQTVMGTEGVIGR 1246

Query: 540  NTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVLGIT 361
             TTSNHIIEVQ+TLGIEAARKCII+EI YTM  HGM+IDIRHMMLL DLMT +GEVLGIT
Sbjct: 1247 ETTSNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMTFRGEVLGIT 1306

Query: 360  RFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILKIRQ 181
            RFGIQKM +SVLMLASFEKTADHLFNASV+GRDDKIEGVSECIIMGIPMQ+GTGILK+RQ
Sbjct: 1307 RFGIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKVRQ 1366

Query: 180  RLEHIPQLDYGPESI 136
            RL+ +P+L YG + I
Sbjct: 1367 RLQQVPELSYGLDPI 1381


>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
          Length = 1819

 Score =  485 bits (1249), Expect = e-134
 Identities = 258/375 (68%), Positives = 302/375 (80%)
 Frame = -3

Query: 1260 QQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVP 1081
            ++L VFL+TCISRY LKR                EPGTQMTLKTFHFAGVASMNVTLGVP
Sbjct: 1450 KRLGVFLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVP 1509

Query: 1080 RIKEIINGAKNISTPIITATLECKNDAKSARIVQDCIEKTVLGEIAESMKIIFTSRKACI 901
            RIKEIINGAK ISTPIITA LEC N+ K+AR+V+  IE+T LG++A+S+KI+ TSR A I
Sbjct: 1510 RIKEIINGAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSRLALI 1569

Query: 900  LVTLDIELIQHSQLKISAHSVQQSIWRHPKAKLKAQHVEVLDDRKLRIHAPVDDRTKIHF 721
             V LD+E IQ SQL I ++ V++SI R+ + KLK QH++VLD  KL +H P  DR+ IHF
Sbjct: 1570 AVALDMEGIQASQLSIDSNIVRESILRNRRIKLKQQHIKVLDAGKLEVH-PQGDRSTIHF 1628

Query: 720  ELHSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHNLLVEGTNLRAVMGTLGVDGC 541
            ELH+LK++LP V+V GI TVERA+INK  D + K    +NLLVEGT L+ VMGT GV G 
Sbjct: 1629 ELHALKNLLPTVVVKGIETVERAVINK--DNKVK----YNLLVEGTGLQTVMGTEGVIGR 1682

Query: 540  NTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVLGIT 361
             TTSNHIIEVQ+TLGIEAARKCII+EI YTM  HGM+IDIRHMMLL DLMT +GEVLGIT
Sbjct: 1683 ETTSNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMTFRGEVLGIT 1742

Query: 360  RFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILKIRQ 181
            RFGIQKM +SVLMLASFEKTADHLFNASV+GRDDKIEGVSECIIMGIPMQ+GTGILK+RQ
Sbjct: 1743 RFGIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKVRQ 1802

Query: 180  RLEHIPQLDYGPESI 136
            RL+ +P+L YG + I
Sbjct: 1803 RLQQVPELSYGLDPI 1817


>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            rpc1-like isoform X2 [Citrus sinensis]
          Length = 1404

 Score =  473 bits (1218), Expect = e-131
 Identities = 255/376 (67%), Positives = 298/376 (79%), Gaps = 5/376 (1%)
 Frame = -3

Query: 1260 QQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVP 1081
            +QL+VF++TC SRYH+KR                EPGTQMTLKTFHFAGVASMN+T GVP
Sbjct: 1023 KQLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVP 1082

Query: 1080 RIKEIINGAKNISTPIITATLECKNDAKSARIVQDCIEKTVLGEIAESMKIIFTSRKACI 901
            RIKEIINGAK ISTPIITA LEC ++  +AR+V+  IEKT+LG++A+S+KI+ TSR A I
Sbjct: 1083 RIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASI 1142

Query: 900  LVTLDIELIQHSQLKISAHSVQQSIWRHPKAKLKAQHVEVLDDRKLRIHAPVDDRTKIHF 721
            ++ LD+E IQ + L I+A  V++SI + PK KLK QH++VLD RKL I  PVD ++KIHF
Sbjct: 1143 VIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIHF 1201

Query: 720  ELHSLKSMLPKVIVMGIPTVERAII-NKLKDKRG-KETGE---HNLLVEGTNLRAVMGTL 556
            EL+SLK++LP VIV GI TVER +I  K K+KR  KE GE   + LLVEGT L+AVMG  
Sbjct: 1202 ELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAE 1261

Query: 555  GVDGCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGE 376
            G+DGC T SNHI EVQ+TLGIEAAR CIIDEIN TMK HGM+ID RHMMLL DLMT +GE
Sbjct: 1262 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1321

Query: 375  VLGITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGI 196
            VLGITRFGIQKM +SVLMLASFEKTADHLFNASVNGRDD+IEGVSECIIMGIPM +GTGI
Sbjct: 1322 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1381

Query: 195  LKIRQRLEHIPQLDYG 148
            LKIRQR    P L YG
Sbjct: 1382 LKIRQRDAVPPMLKYG 1397


>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
            gi|557526635|gb|ESR37941.1| hypothetical protein
            CICLE_v10027681mg [Citrus clementina]
          Length = 1397

 Score =  473 bits (1218), Expect = e-131
 Identities = 255/376 (67%), Positives = 298/376 (79%), Gaps = 5/376 (1%)
 Frame = -3

Query: 1260 QQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVP 1081
            +QL+VF++TC SRYH+KR                EPGTQMTLKTFHFAGVASMN+T GVP
Sbjct: 1016 KQLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVP 1075

Query: 1080 RIKEIINGAKNISTPIITATLECKNDAKSARIVQDCIEKTVLGEIAESMKIIFTSRKACI 901
            RIKEIINGAK ISTPIITA LEC ++  +AR+V+  IEKT+LG++A+S+KI+ TSR A I
Sbjct: 1076 RIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASI 1135

Query: 900  LVTLDIELIQHSQLKISAHSVQQSIWRHPKAKLKAQHVEVLDDRKLRIHAPVDDRTKIHF 721
            ++ LD+E IQ + L I+A  V++SI + PK KLK QH++VLD RKL I  PVD ++KIHF
Sbjct: 1136 VIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKIHF 1194

Query: 720  ELHSLKSMLPKVIVMGIPTVERAII-NKLKDKRG-KETGE---HNLLVEGTNLRAVMGTL 556
            EL+SLK++LP VIV GI TVER +I  K K+KR  KE GE   + LLVEGT L+AVMG  
Sbjct: 1195 ELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAE 1254

Query: 555  GVDGCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGE 376
            G+DGC T SNHI EVQ+TLGIEAAR CIIDEIN TMK HGM+ID RHMMLL DLMT +GE
Sbjct: 1255 GIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGE 1314

Query: 375  VLGITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGI 196
            VLGITRFGIQKM +SVLMLASFEKTADHLFNASVNGRDD+IEGVSECIIMGIPM +GTGI
Sbjct: 1315 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGI 1374

Query: 195  LKIRQRLEHIPQLDYG 148
            LKIRQR    P L YG
Sbjct: 1375 LKIRQRDAVPPMLKYG 1390


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
            sativus]
          Length = 1400

 Score =  472 bits (1214), Expect = e-130
 Identities = 247/375 (65%), Positives = 295/375 (78%)
 Frame = -3

Query: 1260 QQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVP 1081
            +QLQVFL+TC+SRYH K+                EPGTQMTLKTFHFAGVASMNVTLGVP
Sbjct: 1025 RQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVP 1084

Query: 1080 RIKEIINGAKNISTPIITATLECKNDAKSARIVQDCIEKTVLGEIAESMKIIFTSRKACI 901
            RIKEIINGAK ISTPI+TA L   ++   AR+V+  IEKT LG+IA+ ++I+ +SR A I
Sbjct: 1085 RIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIEKTNLGQIAKCIQIVMSSRSALI 1144

Query: 900  LVTLDIELIQHSQLKISAHSVQQSIWRHPKAKLKAQHVEVLDDRKLRIHAPVDDRTKIHF 721
             + LD+E I+ ++L + A+ V+Q+I   PK KLK +H+ VLDDRKLR+     DR K+HF
Sbjct: 1145 EIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKLRVLPQDADRNKLHF 1204

Query: 720  ELHSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHNLLVEGTNLRAVMGTLGVDGC 541
             LH LK+MLP V+V GI TV RA+I + KDK  +   + +LLVEGT L+AVMGT GVDGC
Sbjct: 1205 NLHFLKNMLPGVVVKGIKTVGRAVIKEEKDK-ARNAKKFSLLVEGTGLQAVMGTEGVDGC 1263

Query: 540  NTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVLGIT 361
            NT SNHIIEVQ+ LGIEAARKCII+EI YTM+ HGM+IDIRHMMLLGDLMT +GEVLGIT
Sbjct: 1264 NTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMTFRGEVLGIT 1323

Query: 360  RFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILKIRQ 181
            RFGIQKM +SVLMLASFEKTADHLFNASVNGRDDKIEGVSEC+IMGIPM +GTG+LK+RQ
Sbjct: 1324 RFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPLGTGMLKVRQ 1383

Query: 180  RLEHIPQLDYGPESI 136
            R+    QL YGP +I
Sbjct: 1384 RVSVPQQLPYGPPAI 1398


>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
            communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
            polymerase III largest subunit, putative [Ricinus
            communis]
          Length = 1383

 Score =  468 bits (1203), Expect = e-129
 Identities = 242/378 (64%), Positives = 301/378 (79%), Gaps = 3/378 (0%)
 Frame = -3

Query: 1260 QQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVP 1081
            +Q++VF++TCI+RY  KR                EPGTQMTLKTFHFAGVASMN+T GVP
Sbjct: 1005 RQIEVFVKTCINRYLWKRVEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVP 1064

Query: 1080 RIKEIINGAKNISTPIITATLECKNDAKSARIVQDCIEKTVLGEIAESMKIIFTSRKACI 901
            RIKEIINGAK ISTPIITA LE   +  +ARI +  I+KTVLG++A+S+KI+ TSR A +
Sbjct: 1065 RIKEIINGAKKISTPIITAELEQNTNVTAARIAKGRIQKTVLGQVAKSIKIVMTSRSASV 1124

Query: 900  LVTLDIELIQHSQLKISAHSVQQSIWRHPKAKLKAQHVEVLDDRKLRIHAPVDDRTKIHF 721
            ++TLD++ IQ++QL + A+ V+++I R P+ KLK QH++VLD RKL +  P+ DR ++HF
Sbjct: 1125 VITLDMKTIQNAQLSLDANIVKEAILRTPRIKLKPQHIKVLDTRKLEV-IPLGDRERVHF 1183

Query: 720  ELHSLKSMLPKVIVMGIPTVERAIINKLKDK---RGKETGEHNLLVEGTNLRAVMGTLGV 550
            ELH+LK++LP +IV GI TVERA+I + K       +E   +N+LVEG  L  VMGT GV
Sbjct: 1184 ELHNLKNLLPSIIVQGIKTVERAVIAQKKHDGKANDQELPTYNMLVEGMGLDLVMGTEGV 1243

Query: 549  DGCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVL 370
            DGC TTSNH++EVQ+ LGIEAARKCIIDEIN TM+ HGM+IDIRHMMLLGDLMT KGEVL
Sbjct: 1244 DGCKTTSNHVMEVQKFLGIEAARKCIIDEINQTMEHHGMSIDIRHMMLLGDLMTFKGEVL 1303

Query: 369  GITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILK 190
            GITRFGIQKM +SVLMLASFEKTADHL++A+V GRDDKIEGVSECIIMGIPMQIGTGILK
Sbjct: 1304 GITRFGIQKMDKSVLMLASFEKTADHLYHAAVFGRDDKIEGVSECIIMGIPMQIGTGILK 1363

Query: 189  IRQRLEHIPQLDYGPESI 136
            ++QR++  P L+YG +SI
Sbjct: 1364 VQQRVDPPPVLNYGSDSI 1381


>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
          Length = 1321

 Score =  467 bits (1201), Expect = e-129
 Identities = 245/375 (65%), Positives = 291/375 (77%)
 Frame = -3

Query: 1260 QQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVP 1081
            +QLQVFL+TC+SRYHLK+                EPGTQMTLKTFHFAGVASMNVTLGVP
Sbjct: 948  KQLQVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVP 1007

Query: 1080 RIKEIINGAKNISTPIITATLECKNDAKSARIVQDCIEKTVLGEIAESMKIIFTSRKACI 901
            RIKEIIN AK ISTPIITA L  + D  SARIV+  +EK VLGE+AE++KI+  S +  +
Sbjct: 1008 RIKEIINAAKKISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAEAIKIVLKSSQPNL 1067

Query: 900  LVTLDIELIQHSQLKISAHSVQQSIWRHPKAKLKAQHVEVLDDRKLRIHAPVDDRTKIHF 721
            +V LD++ I+   + ISA SVQ SI  HPK KLK++HV V+D  KLRI+    D++K+ +
Sbjct: 1068 VVKLDMQRIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDKSKLRIYPAGIDKSKLLY 1127

Query: 720  ELHSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHNLLVEGTNLRAVMGTLGVDGC 541
            ELH LKSMLPKVIV GIPTVERA+I++  ++  K    + LLVEGTNL AVMGT GVD  
Sbjct: 1128 ELHHLKSMLPKVIVKGIPTVERAVISETGEENDKR---YKLLVEGTNLLAVMGTPGVDAM 1184

Query: 540  NTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVLGIT 361
             T SNHI+EV  TLGIEAAR+ IIDEI YTMK HGM ID RHMMLL DLMT KGE+LGIT
Sbjct: 1185 KTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGIT 1244

Query: 360  RFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILKIRQ 181
            R+GI KMK SVLMLASFEKTA+HLFNAS +GR+D+IEGVSECIIMGIPMQ+GTGILK+RQ
Sbjct: 1245 RYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQ 1304

Query: 180  RLEHIPQLDYGPESI 136
            RL+H+P+  Y P+ I
Sbjct: 1305 RLDHLPEFKYQPDPI 1319


>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
            gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
            Japonica Group] gi|38347455|emb|CAD41360.2|
            OSJNBa0076N16.24 [Oryza sativa Japonica Group]
            gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
            Japonica Group] gi|116310339|emb|CAH67354.1|
            OSIGBa0130B08.14 [Oryza sativa Indica Group]
            gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
            Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|218195112|gb|EEC77539.1| hypothetical protein
            OsI_16437 [Oryza sativa Indica Group]
          Length = 1383

 Score =  467 bits (1201), Expect = e-129
 Identities = 245/375 (65%), Positives = 291/375 (77%)
 Frame = -3

Query: 1260 QQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVP 1081
            +QLQVFL+TC+SRYHLK+                EPGTQMTLKTFHFAGVASMNVTLGVP
Sbjct: 1010 KQLQVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVP 1069

Query: 1080 RIKEIINGAKNISTPIITATLECKNDAKSARIVQDCIEKTVLGEIAESMKIIFTSRKACI 901
            RIKEIIN AK ISTPIITA L  + D  SARIV+  +EK VLGE+AE++KI+  S +  +
Sbjct: 1070 RIKEIINAAKKISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAEAIKIVLKSSQPNL 1129

Query: 900  LVTLDIELIQHSQLKISAHSVQQSIWRHPKAKLKAQHVEVLDDRKLRIHAPVDDRTKIHF 721
            +V LD++ I+   + ISA SVQ SI  HPK KLK++HV V+D  KLRI+    D++K+ +
Sbjct: 1130 VVKLDMQRIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDKSKLRIYPAGIDKSKLLY 1189

Query: 720  ELHSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHNLLVEGTNLRAVMGTLGVDGC 541
            ELH LKSMLPKVIV GIPTVERA+I++  ++  K    + LLVEGTNL AVMGT GVD  
Sbjct: 1190 ELHHLKSMLPKVIVKGIPTVERAVISETGEENDKR---YKLLVEGTNLLAVMGTPGVDAM 1246

Query: 540  NTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVLGIT 361
             T SNHI+EV  TLGIEAAR+ IIDEI YTMK HGM ID RHMMLL DLMT KGE+LGIT
Sbjct: 1247 KTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGIT 1306

Query: 360  RFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILKIRQ 181
            R+GI KMK SVLMLASFEKTA+HLFNAS +GR+D+IEGVSECIIMGIPMQ+GTGILK+RQ
Sbjct: 1307 RYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQ 1366

Query: 180  RLEHIPQLDYGPESI 136
            RL+H+P+  Y P+ I
Sbjct: 1367 RLDHLPEFKYQPDPI 1381


>gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis]
          Length = 1179

 Score =  466 bits (1198), Expect = e-128
 Identities = 243/375 (64%), Positives = 291/375 (77%)
 Frame = -3

Query: 1260 QQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVP 1081
            +QL+VFL+TCISRYH K+                EPGTQMTLKTFHFAGVASMNVTLGVP
Sbjct: 802  RQLEVFLDTCISRYHSKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVP 861

Query: 1080 RIKEIINGAKNISTPIITATLECKNDAKSARIVQDCIEKTVLGEIAESMKIIFTSRKACI 901
            RIKEIINGAK ISTPIITA LEC N+   ARIV+  IEK  LG++A+S+K + TSR A +
Sbjct: 862  RIKEIINGAKKISTPIITAILECDNNVNFARIVRGRIEKISLGQVAKSIKTVMTSRVASV 921

Query: 900  LVTLDIELIQHSQLKISAHSVQQSIWRHPKAKLKAQHVEVLDDRKLRIHAPVDDRTKIHF 721
            ++TLD+E IQ + L I A+ V+ SI + P+ KLK +H+ VLD +KL I     +R+K++ 
Sbjct: 922  VITLDMERIQDALLSIDANVVRDSILQTPRIKLKKEHIRVLDFKKLEILPYESNRSKLYH 981

Query: 720  ELHSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHNLLVEGTNLRAVMGTLGVDGC 541
             L  L  ML  ++V GI TVERA+I+  KDK+   + ++ LLVEGT L  VMGT GVDG 
Sbjct: 982  HLQFLAKMLQNILVKGIKTVERAVISSEKDKKTDISKKYKLLVEGTGLLGVMGTEGVDGR 1041

Query: 540  NTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVLGIT 361
            NT +NHIIEVQ+TLGIEAAR CIIDEI YTMK HGM+ID RHMMLL D+MTS+GEVLGIT
Sbjct: 1042 NTKTNHIIEVQQTLGIEAARTCIIDEIEYTMKSHGMSIDTRHMMLLADVMTSRGEVLGIT 1101

Query: 360  RFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILKIRQ 181
            RFGIQKM +SVLMLASFEKTADHLFNASVNGR+DKIEGVSECIIMGIPMQIGTG++K+RQ
Sbjct: 1102 RFGIQKMDKSVLMLASFEKTADHLFNASVNGREDKIEGVSECIIMGIPMQIGTGMIKVRQ 1161

Query: 180  RLEHIPQLDYGPESI 136
            R++  P L YGP+ I
Sbjct: 1162 RVDVPPMLSYGPKPI 1176


>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Setaria
            italica]
          Length = 1397

 Score =  464 bits (1194), Expect = e-128
 Identities = 245/375 (65%), Positives = 292/375 (77%)
 Frame = -3

Query: 1260 QQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVP 1081
            +QLQVFL+TC SRY+ K                 EPGTQMTLKTFHFAGVASMNVTLGVP
Sbjct: 1023 KQLQVFLDTCFSRYNSKAIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVP 1082

Query: 1080 RIKEIINGAKNISTPIITATLECKNDAKSARIVQDCIEKTVLGEIAESMKIIFTSRKACI 901
            RIKEIIN AK ISTPIIT  L  + D  SARIV+  +EK VLGE+A ++KI+  S +  +
Sbjct: 1083 RIKEIINAAKKISTPIITTELLSRKDVLSARIVKGAMEKAVLGEVASAIKIVLKSSQPNL 1142

Query: 900  LVTLDIELIQHSQLKISAHSVQQSIWRHPKAKLKAQHVEVLDDRKLRIHAPVDDRTKIHF 721
            +V LD++LI+   + ISA SVQ SI  HPK KLK++HV V+D  KLRI+    D++K+  
Sbjct: 1143 VVKLDMQLIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDRAKLRIYPAGTDKSKLQL 1202

Query: 720  ELHSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHNLLVEGTNLRAVMGTLGVDGC 541
            ELH+LK+MLPKVIV GIPTVER +I++ K K GK   ++NLLVEGTNL AVMGT GVD  
Sbjct: 1203 ELHNLKAMLPKVIVKGIPTVERVVIDERK-KEGK-LEKYNLLVEGTNLLAVMGTPGVDAR 1260

Query: 540  NTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVLGIT 361
            NT SNHI+E+  TLGIEAAR+ IIDEI YTMK HGM ID+RHMMLL DLMT KGEVLGIT
Sbjct: 1261 NTKSNHIMEMNSTLGIEAARRSIIDEIQYTMKSHGMNIDVRHMMLLADLMTYKGEVLGIT 1320

Query: 360  RFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILKIRQ 181
            R+GI KMK SVLMLASFEKT++HLFNAS +GR+D+IEGVSECIIMGIPMQ+GTGILK+RQ
Sbjct: 1321 RYGIAKMKTSVLMLASFEKTSEHLFNASYSGREDEIEGVSECIIMGIPMQLGTGILKVRQ 1380

Query: 180  RLEHIPQLDYGPESI 136
            RL+H+P+L Y P+ I
Sbjct: 1381 RLDHLPELKYQPDPI 1395


>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
            brachyantha]
          Length = 1389

 Score =  461 bits (1187), Expect = e-127
 Identities = 241/375 (64%), Positives = 288/375 (76%)
 Frame = -3

Query: 1260 QQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVP 1081
            +QLQVFL+TC+SRYH K+                EPGTQMTLKTFHFAGVASMNVTLGVP
Sbjct: 1020 KQLQVFLDTCLSRYHSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVP 1079

Query: 1080 RIKEIINGAKNISTPIITATLECKNDAKSARIVQDCIEKTVLGEIAESMKIIFTSRKACI 901
            RIKEIIN AK ISTPIITA L    D  SAR+V+  +EK VLGE+AE +KI+  S +  +
Sbjct: 1080 RIKEIINAAKKISTPIITAELLSGKDVLSARVVKGSMEKAVLGEVAEDIKIVLKSSQPNL 1139

Query: 900  LVTLDIELIQHSQLKISAHSVQQSIWRHPKAKLKAQHVEVLDDRKLRIHAPVDDRTKIHF 721
            +V LD++ I+   + ISA SVQ SI  HP+ KLK++HV V+D  KLR++    D++K+ +
Sbjct: 1140 VVKLDMQRIEDLHMGISADSVQLSILNHPRIKLKSEHVRVIDKAKLRVYPTAIDKSKLLY 1199

Query: 720  ELHSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHNLLVEGTNLRAVMGTLGVDGC 541
            ELH+LKSMLPKVIV GIPTVERA+I++  DK       ++LLVEGTNL AVMGT GVD  
Sbjct: 1200 ELHNLKSMLPKVIVKGIPTVERAVISQTGDK-------YSLLVEGTNLLAVMGTPGVDAM 1252

Query: 540  NTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVLGIT 361
             T SNHI+EV  TLGIEAAR+ IIDEI YTM  HGM ID RHMMLL DLMT KGE+LGIT
Sbjct: 1253 KTKSNHIMEVNRTLGIEAARRSIIDEIQYTMTSHGMNIDSRHMMLLADLMTYKGEILGIT 1312

Query: 360  RFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILKIRQ 181
            R+GI KMK SVLMLASFEKTA+HLFNAS +GR+D+IEGVSECIIMGIPMQ+GTGILK+RQ
Sbjct: 1313 RYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQ 1372

Query: 180  RLEHIPQLDYGPESI 136
            RL+H+P+  Y P+ I
Sbjct: 1373 RLDHLPEFKYQPDPI 1387


>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
            gi|241937900|gb|EES11045.1| hypothetical protein
            SORBIDRAFT_06g021120 [Sorghum bicolor]
          Length = 1391

 Score =  461 bits (1186), Expect = e-127
 Identities = 241/375 (64%), Positives = 289/375 (77%)
 Frame = -3

Query: 1260 QQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVP 1081
            +QLQVFL+TC+SRY  K+                EPGTQMTLKTFHFAGVASMNVTLGVP
Sbjct: 1017 KQLQVFLDTCLSRYQSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVP 1076

Query: 1080 RIKEIINGAKNISTPIITATLECKNDAKSARIVQDCIEKTVLGEIAESMKIIFTSRKACI 901
            RIKEIIN A+ ISTPIITA L  K D  SARIV+  +EK VLGE+A +++I+  S +  +
Sbjct: 1077 RIKEIINAARKISTPIITAQLLSKKDVLSARIVKGSMEKAVLGEVAVAIQIVLKSSQPNL 1136

Query: 900  LVTLDIELIQHSQLKISAHSVQQSIWRHPKAKLKAQHVEVLDDRKLRIHAPVDDRTKIHF 721
            +V LD++LI+   + ISA SVQ SI  HPK KLK++HV V+D  KLRI+    D+ K+  
Sbjct: 1137 IVKLDMQLIESLHMGISADSVQLSILNHPKIKLKSEHVRVIDRAKLRIYPAGTDKRKLQL 1196

Query: 720  ELHSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHNLLVEGTNLRAVMGTLGVDGC 541
            ELH+LKS+LPKVIV GIPTVER +I+++K K   ET  + LLVEGTNL AVMGT GVD  
Sbjct: 1197 ELHNLKSILPKVIVKGIPTVERVVIDEVKVKN--ETERYQLLVEGTNLLAVMGTPGVDAT 1254

Query: 540  NTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVLGIT 361
             T SNHI+E  +TLGIEAAR+ IIDEI YTMK HGM ID RHMMLL DLMT KGE+LGIT
Sbjct: 1255 KTKSNHIMETNQTLGIEAARRSIIDEIQYTMKSHGMNIDRRHMMLLADLMTYKGEILGIT 1314

Query: 360  RFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILKIRQ 181
            R+GI KMK SVLMLASFEKT++HLFNAS +GR+D+IEGVSECIIMGIPMQ+GTGILK+RQ
Sbjct: 1315 RYGIAKMKSSVLMLASFEKTSEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQ 1374

Query: 180  RLEHIPQLDYGPESI 136
            RL+H+P+  Y P+ I
Sbjct: 1375 RLDHVPEFKYQPDPI 1389


>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
            lycopersicum]
          Length = 1390

 Score =  453 bits (1166), Expect = e-125
 Identities = 244/380 (64%), Positives = 293/380 (77%), Gaps = 3/380 (0%)
 Frame = -3

Query: 1260 QQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVP 1081
            +QLQVFL TCISRYHLKR                EPGTQMTLKTFHFAGVASMNVTLGVP
Sbjct: 1012 KQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVP 1071

Query: 1080 RIKEIINGAKNISTPIITATLECKNDAKSARIVQDCIEKTVLGEIAESMKIIFTSRKACI 901
            RIKEIIN AK I+TPIITA L    +  +AR+++  IEKT+LG++A+S+KI+  SR A I
Sbjct: 1072 RIKEIINAAKKITTPIITAKLLSAGNLTAARMIKARIEKTLLGQVAKSVKIVLASRLASI 1131

Query: 900  LVTLDIELIQHSQLKISAHSVQQSIWRHPKAKLKAQHVEVLDDRKLRIHAPVDDRTKIHF 721
             ++LD+E IQ SQL I A++V+QSI +  K KLK   ++VL+ RKL +  P  ++ K+HF
Sbjct: 1132 AISLDMETIQVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPRKLEVF-PQANKDKLHF 1190

Query: 720  ELHSLKSMLPKVIVMGIPTVERAIINK--LKDKRGKETGE-HNLLVEGTNLRAVMGTLGV 550
            ELH LK+ LP V+V GI TV+RA++NK   KD++    GE + LLVEGT L AVMG  GV
Sbjct: 1191 ELHRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTGLLAVMGIEGV 1250

Query: 549  DGCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVL 370
            DG  T SNHI+EVQ TLGIEAAR  IIDEINYTM  HGMTID+RHMMLL DLMT KGEVL
Sbjct: 1251 DGRYTKSNHIMEVQHTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLADLMTYKGEVL 1310

Query: 369  GITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILK 190
            GITR G+QKMK+SVLMLASFEKT DHLFNASVNGRDDKIEGV+ECIIMGIPM IGTG+ K
Sbjct: 1311 GITRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGIPMTIGTGMFK 1370

Query: 189  IRQRLEHIPQLDYGPESIFL 130
            +RQR+EH+ +L+Y P+ + +
Sbjct: 1371 LRQRVEHV-ELNYQPDPMMI 1389


>ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao]
            gi|508773465|gb|EOY20721.1| DNA-directed RNA polymerase
            [Theobroma cacao]
          Length = 1395

 Score =  451 bits (1160), Expect = e-124
 Identities = 237/380 (62%), Positives = 297/380 (78%), Gaps = 5/380 (1%)
 Frame = -3

Query: 1260 QQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVP 1081
            +QL+VF+ TCISRY  K                 EPGTQMTLKTFHFAGVASMN+T GVP
Sbjct: 1015 RQLEVFVSTCISRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVP 1074

Query: 1080 RIKEIINGAKNISTPIITATLECKNDAKSARIVQDCIEKTVLGEIAESMKIIFTSRKACI 901
            RIKEIIN AK ISTP+ITA LE  ++   A+IV+  IEKTVLG++A+S+KI+ TSR A +
Sbjct: 1075 RIKEIINAAKRISTPVITAELEFDDNPNIAQIVKGRIEKTVLGQVAKSIKIVITSRSASV 1134

Query: 900  LVTLDIELIQHSQLKISAHSVQQSIWRHPKAKLKAQHVEVLDDRKLRIHAPVDDRTKIHF 721
            ++TLD+E+I  ++L I A+ V++SI + PK KLK QHV+VLD RKL +  P D R++IHF
Sbjct: 1135 VITLDMEIILDAELYIDANIVKESILQTPKIKLKEQHVKVLDGRKLEVVPPAD-RSQIHF 1193

Query: 720  ELHSLKSMLPKVIVMGIPTVERAII----NKLKDKRGKETGEH-NLLVEGTNLRAVMGTL 556
            ELHSLK++LP V+V GI TVER ++     + K+++ +ET +H  LLVEGT L+AVMG  
Sbjct: 1194 ELHSLKNLLPLVVVKGIKTVERTVVYDKNKEKKNQKEEETTKHFQLLVEGTGLQAVMGIE 1253

Query: 555  GVDGCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGE 376
            G+DG  T SNH++E+++ LGIEAARKCIIDEI  TM+ HGMTID RHMMLL D+MT +GE
Sbjct: 1254 GIDGRRTWSNHVMEMEQILGIEAARKCIIDEIAQTMEHHGMTIDRRHMMLLADVMTFRGE 1313

Query: 375  VLGITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGI 196
            VLGITRFGIQKM +S+LMLASFE+TADHLFNA+VNGRDDKIEGV+ECIIMGIPMQIGTGI
Sbjct: 1314 VLGITRFGIQKMDKSILMLASFERTADHLFNAAVNGRDDKIEGVTECIIMGIPMQIGTGI 1373

Query: 195  LKIRQRLEHIPQLDYGPESI 136
            LK+ QR++  P L YGP+ +
Sbjct: 1374 LKVIQRVDPPPMLRYGPDPV 1393


>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Solanum tuberosum]
          Length = 1394

 Score =  450 bits (1157), Expect = e-124
 Identities = 244/380 (64%), Positives = 291/380 (76%), Gaps = 3/380 (0%)
 Frame = -3

Query: 1260 QQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVP 1081
            +QLQVFL TCISRYHLKR                EPGTQMTLKTFHFAGVASMNVTLGVP
Sbjct: 1012 RQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVP 1071

Query: 1080 RIKEIINGAKNISTPIITATLECKNDAKSARIVQDCIEKTVLGEIAESMKIIFTSRKACI 901
            RIKEIIN AK I+TPIIT  L    +  +AR+++  IEKT+LG++A+S+KI+  SR A I
Sbjct: 1072 RIKEIINAAKKITTPIITTKLLSAANLTAARMIKARIEKTLLGQVAKSVKIVLASRLASI 1131

Query: 900  LVTLDIELIQHSQLKISAHSVQQSIWRHPKAKLKAQHVEVLDDRKLRIHAPVDDRTKIHF 721
             ++LD+E IQ SQL I A++V+QSI +  K KLK   ++VL+ RKL +  P  ++ K+HF
Sbjct: 1132 AISLDMETIQVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPRKLEVF-PQANKDKLHF 1190

Query: 720  ELHSLKSMLPKVIVMGIPTVERAIINK--LKDKRGKETGE-HNLLVEGTNLRAVMGTLGV 550
            ELH LK+ LP V+V GI TV+RA++NK   KD++    GE + LLVEGT L AVMG  GV
Sbjct: 1191 ELHRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTGLLAVMGIEGV 1250

Query: 549  DGCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVL 370
            DG  T SNHI+EVQ TLGIEAAR  IIDEINYTM  HGMTID+RHMMLL DLMT KGEVL
Sbjct: 1251 DGRYTKSNHIMEVQNTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLADLMTYKGEVL 1310

Query: 369  GITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILK 190
            GITR G+QKMK+SVLMLASFEKT DHLFNASVNGRDDKIEGV+ECIIMGIPM IGTG+ K
Sbjct: 1311 GITRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGIPMTIGTGMFK 1370

Query: 189  IRQRLEHIPQLDYGPESIFL 130
            +RQR+E + +L+Y P+ I L
Sbjct: 1371 LRQRVEQV-ELNYQPDPIIL 1389


>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Brachypodium distachyon]
          Length = 1392

 Score =  443 bits (1140), Expect = e-122
 Identities = 237/376 (63%), Positives = 285/376 (75%), Gaps = 1/376 (0%)
 Frame = -3

Query: 1260 QQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVP 1081
            +QLQVFL+TC+SRYH K                 EPGTQMTLKTFHFAGVASMNVTLGVP
Sbjct: 1016 KQLQVFLDTCLSRYHSKIIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVP 1075

Query: 1080 RIKEIINGAKNISTPIITATLECKNDAKSARIVQDCIEKTVLGEIAESMKIIFTSRKACI 901
            RIKEIIN AKNISTPIITA L    D   A  V+  +EK VLGE+A  +KI+  S +  +
Sbjct: 1076 RIKEIINAAKNISTPIITAELLSGQDMSFAVKVKRYVEKVVLGEVAAVIKIVLKSSQPNL 1135

Query: 900  LVTLDIELIQ-HSQLKISAHSVQQSIWRHPKAKLKAQHVEVLDDRKLRIHAPVDDRTKIH 724
            +V LD++ I+    + IS+ SVQQSI RHPK KLK++HV V+D  KLRI+    D++K+ 
Sbjct: 1136 VVKLDMQRIEAQGYMGISSDSVQQSIIRHPKIKLKSEHVRVIDGAKLRIYPTGTDKSKLQ 1195

Query: 723  FELHSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHNLLVEGTNLRAVMGTLGVDG 544
             ELH+LKSMLPKVIV GIPTVERA++N +K +  K    +NLLVEGTNL  V+GT GVD 
Sbjct: 1196 LELHTLKSMLPKVIVKGIPTVERAVVNPVK-RPDKTLDRYNLLVEGTNLLKVLGTPGVDA 1254

Query: 543  CNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVLGI 364
              T SNHI+EV +TLGIEAAR+ IIDEI YT + + M ID RHMMLL DLMT KGEVLGI
Sbjct: 1255 KKTKSNHIMEVNQTLGIEAARRSIIDEIRYTFESNNMIIDQRHMMLLADLMTYKGEVLGI 1314

Query: 363  TRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILKIR 184
            TRFGI KMK SVLMLASFEKT +HLFNAS +GR+D+IEGVSECIIMGIPM +G+GILK+R
Sbjct: 1315 TRFGIVKMKSSVLMLASFEKTLEHLFNASYSGREDEIEGVSECIIMGIPMTLGSGILKVR 1374

Query: 183  QRLEHIPQLDYGPESI 136
            QRL+H+P+ +Y P++I
Sbjct: 1375 QRLDHLPEFNYQPDAI 1390


>ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi|162691719|gb|EDQ78080.1|
            predicted protein [Physcomitrella patens]
          Length = 1397

 Score =  443 bits (1139), Expect = e-122
 Identities = 235/370 (63%), Positives = 282/370 (76%)
 Frame = -3

Query: 1254 LQVFLETCISRYHLKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRI 1075
            LQVFL+TCI RYH+KR                EPGTQMTLKTFHFAGVASMN+TLGVPRI
Sbjct: 1030 LQVFLDTCIKRYHMKRVEPGAAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRI 1089

Query: 1074 KEIINGAKNISTPIITATLECKNDAKSARIVQDCIEKTVLGEIAESMKIIFTSRKACILV 895
            KEIIN +KNISTPIITA L   ND K+ARIV+  IEKT LGE+A+S+K +  + +A I V
Sbjct: 1090 KEIINASKNISTPIITAVLVSGNDEKAARIVKGRIEKTTLGEVAKSIKTVLRASQAIISV 1149

Query: 894  TLDIELIQHSQLKISAHSVQQSIWRHPKAKLKAQHVEVLDDRKLRIHAPVDDRTKIHFEL 715
             LD++ I   QL I++ +V  +I + PK KLK  ++ ++D  KL +  P  D+ K++F L
Sbjct: 1150 KLDMKRIDALQLDINSDTVALAIVQTPKIKLKHVNIRIVDRDKLIVIPPDQDKGKLYFYL 1209

Query: 714  HSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHNLLVEGTNLRAVMGTLGVDGCNT 535
            HSL +MLPKVIV GIP+VERA+INK       E G +NLLVEGTNL+AVMG  GV+G  T
Sbjct: 1210 HSLCNMLPKVIVKGIPSVERAVINK-------EKGVYNLLVEGTNLKAVMGISGVNGKLT 1262

Query: 534  TSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVLGITRF 355
             SNH+IE ++TLGIEAAR  IIDEI YTM  HGMTID RHMMLL D+MT KGEVLGITRF
Sbjct: 1263 KSNHVIEAEQTLGIEAARNVIIDEIQYTMGSHGMTIDARHMMLLADVMTYKGEVLGITRF 1322

Query: 354  GIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILKIRQRL 175
            GI KMK+SVLMLASFEKT DHLF+A+++GR DKIEGVSECIIMGIPM IGTG+ KIRQ++
Sbjct: 1323 GIAKMKDSVLMLASFEKTTDHLFDAAIHGRVDKIEGVSECIIMGIPMPIGTGLFKIRQKV 1382

Query: 174  EHIPQLDYGP 145
            E +P+L YGP
Sbjct: 1383 EKLPKLSYGP 1392


>ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
            gi|300146624|gb|EFJ13293.1| hypothetical protein
            SELMODRAFT_446351 [Selaginella moellendorffii]
          Length = 1393

 Score =  442 bits (1136), Expect = e-121
 Identities = 234/379 (61%), Positives = 283/379 (74%), Gaps = 3/379 (0%)
 Frame = -3

Query: 1260 QQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVP 1081
            +QL+VFL TCI RYH K+                EPGTQMTLKTFHFAGVASMN+TLGVP
Sbjct: 1021 RQLEVFLNTCIGRYHRKKLDPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVP 1080

Query: 1080 RIKEIINGAKNISTPIITATLECKNDAKSARIVQDCIEKTVLGEIAESMKIIFTSRKACI 901
            RIKEIIN +K ISTPIITA L  +ND K+ARIV+  IEKT LG++A+S+KI+    +A +
Sbjct: 1081 RIKEIINASKKISTPIITAKLVSENDVKAARIVKGRIEKTALGDVAKSIKIVLRPGQAFV 1140

Query: 900  LVTLDIELIQHSQLKISAHSVQQSIWRHPKAK---LKAQHVEVLDDRKLRIHAPVDDRTK 730
             + LD++ I   QL I A +V +++ + PK K   LK QHV+V DDR + +  P  DR K
Sbjct: 1141 SIKLDMDRIYSLQLDIRAETVAEAVLKFPKIKSMKLKEQHVKVNDDRSISLTTPESDRKK 1200

Query: 729  IHFELHSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHNLLVEGTNLRAVMGTLGV 550
            + F LHSL++MLPKVIV GIPTVERA+IN+       E G++NLLVEGTNL+AVMGT GV
Sbjct: 1201 MLFALHSLQNMLPKVIVKGIPTVERAVINQ-------EKGKYNLLVEGTNLKAVMGTEGV 1253

Query: 549  DGCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVL 370
            DG  TTSNHI E  E LGIEAAR  II EI YTM  HGM+ID RHMMLL D+MT +GE+L
Sbjct: 1254 DGRETTSNHIFETVEVLGIEAARNGIIKEIQYTMGSHGMSIDQRHMMLLADVMTYRGEIL 1313

Query: 369  GITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILK 190
            GITRFG+ KMK+SVLMLASFEKT DHLF ASV+GR D+IEGVSECIIMGIPM +GTG+ K
Sbjct: 1314 GITRFGMAKMKDSVLMLASFEKTTDHLFAASVHGRTDQIEGVSECIIMGIPMPLGTGLFK 1373

Query: 189  IRQRLEHIPQLDYGPESIF 133
            +RQ++  IP+L YGP  +F
Sbjct: 1374 VRQKVGRIPKLIYGPPPLF 1392


>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1394

 Score =  440 bits (1131), Expect = e-121
 Identities = 234/364 (64%), Positives = 281/364 (77%), Gaps = 3/364 (0%)
 Frame = -3

Query: 1260 QQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVP 1081
            +QL+VFL+TC+ RY  KR                EPGTQMTLKTFHFAGVASMN+T GVP
Sbjct: 1032 KQLEVFLKTCLDRYVWKRIEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVP 1091

Query: 1080 RIKEIINGAKNISTPIITATLECKNDAKSARIVQDCIEKTVLGEIAESMKIIFTSRKACI 901
            RIKEIINGAK ISTPIIT  LE  ++  +ARI++  I+KTVLG++A+S+KI+ TSR A +
Sbjct: 1092 RIKEIINGAKRISTPIITVELEHNSNVNAARIIKGRIQKTVLGQVAKSIKIVMTSRSASV 1151

Query: 900  LVTLDIELIQHSQLKISAHSVQQSIWRHPKAKLKAQHVEVLDDRKLRIHAPVDDRTKIHF 721
             VTLD++ I+ +QL + A+ V++ I   PK K K Q + VL+D KL +  P  DR K+HF
Sbjct: 1152 KVTLDMKTIREAQLSLDANIVRELILETPKIKRKLQRINVLEDGKLEVF-PGGDRNKLHF 1210

Query: 720  ELHSLKSMLPKVIVMGIPTVERAII--NKLKDKRGKETG-EHNLLVEGTNLRAVMGTLGV 550
            ELHSLK+MLP V+V GI TVER +I   KL D    + G ++N+ VEG  L+AVMGT GV
Sbjct: 1211 ELHSLKNMLPAVVVKGIKTVERVVIAQKKLDDAENDQGGPKYNMFVEGMGLQAVMGTEGV 1270

Query: 549  DGCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVL 370
            DG  T SNHIIEVQETLGIEAARKCIIDEI  TM+ HGM+IDIRHMMLL D+MTS+G VL
Sbjct: 1271 DGRKTKSNHIIEVQETLGIEAARKCIIDEIKGTMESHGMSIDIRHMMLLADVMTSRGVVL 1330

Query: 369  GITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILK 190
            GITRFGIQKM +SVLMLASFEKT+DHLFNASV G+DDKIEGVSECIIMGIP+ IGTG+LK
Sbjct: 1331 GITRFGIQKMDKSVLMLASFEKTSDHLFNASVKGKDDKIEGVSECIIMGIPVAIGTGVLK 1390

Query: 189  IRQR 178
            I+QR
Sbjct: 1391 IQQR 1394


>gb|EYU39043.1| hypothetical protein MIMGU_mgv1a000232mg [Mimulus guttatus]
          Length = 1394

 Score =  437 bits (1123), Expect = e-120
 Identities = 239/376 (63%), Positives = 285/376 (75%), Gaps = 1/376 (0%)
 Frame = -3

Query: 1260 QQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVP 1081
            QQL VFLETCISRY LK+                EPGTQMTLKTFHFAGVASMNVTLGVP
Sbjct: 1019 QQLMVFLETCISRYRLKKIEGGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVP 1078

Query: 1080 RIKEIINGAKNISTPIITATLECKNDAKSARIVQDCIEKTVLGEIAESMKIIFTSRKACI 901
            RIKEIIN AK I+TPII+  L+  N+   A+IV+  IEKT+L ++A+S+K    SR   I
Sbjct: 1079 RIKEIINAAKKINTPIISTALQSDNNEIIAKIVKGRIEKTLLEQVAKSIKTSQASRSTSI 1138

Query: 900  LVTLDIELIQHSQLKISAHSVQQSIWRHPKAKLKAQHVEVLDDRKLRIHAPVDDRTKIHF 721
            ++TLD+  IQ + L + A++V++SI +  + KLK Q V+VLD RKL I    D +TK+ F
Sbjct: 1139 VITLDMTKIQGAHLSVDAYTVKESILKTKRMKLKEQQVKVLDHRKLEIVMQAD-KTKLQF 1197

Query: 720  ELHSLKSMLPKVIVMGIPTVERAII-NKLKDKRGKETGEHNLLVEGTNLRAVMGTLGVDG 544
            ELH LK+ + KV+V GI TVERAII N+ K+K      +  LLVEGT L +VMG  GV+G
Sbjct: 1198 ELHGLKNKISKVVVKGIDTVERAIILNEAKEKDPSANKKMKLLVEGTGLLSVMGIEGVEG 1257

Query: 543  CNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVLGI 364
              TTSNHIIEVQ  LGIEAARK IIDEI YTM  HGMTIDIRHMMLL DLMTSKGEVLGI
Sbjct: 1258 RKTTSNHIIEVQHILGIEAARKKIIDEIQYTMSSHGMTIDIRHMMLLADLMTSKGEVLGI 1317

Query: 363  TRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILKIR 184
            TR+G+QKMK+SVLMLASFE+T+DHLFNASVNGR DKIEGVSECIIMGIP+QIGTG+LK+R
Sbjct: 1318 TRYGVQKMKDSVLMLASFERTSDHLFNASVNGRVDKIEGVSECIIMGIPVQIGTGMLKVR 1377

Query: 183  QRLEHIPQLDYGPESI 136
            Q ++ I +L YGP+ I
Sbjct: 1378 QNVKPI-ELTYGPDPI 1392