BLASTX nr result
ID: Papaver25_contig00021923
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver25_contig00021923
(643 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EMS47149.1| DNA-directed RNA polymerase II subunit RPB1 [Trit... 147 1e-49
gb|EMT02256.1| DNA-directed RNA polymerase II subunit RPB1 [Aegi... 145 4e-49
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 190 4e-46
ref|XP_007203058.1| hypothetical protein PRUPE_ppa000093mg [Prun... 189 6e-46
ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [A... 188 1e-45
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su... 187 2e-45
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 187 2e-45
ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su... 186 4e-45
gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japo... 186 4e-45
ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II su... 184 2e-44
gb|EXC35292.1| DNA-directed RNA polymerase II subunit rpb1 [Moru... 184 2e-44
ref|XP_007157862.1| hypothetical protein PHAVU_002G104500g [Phas... 184 2e-44
ref|XP_006282990.1| hypothetical protein CARUB_v10003976mg [Caps... 183 3e-44
ref|XP_007046588.1| DNA-directed RNA polymerase II subunit RPB1 ... 183 4e-44
ref|XP_007046587.1| DNA-directed RNA polymerase II subunit RPB1 ... 183 4e-44
ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 ... 183 4e-44
emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II larg... 183 4e-44
ref|NP_195305.2| DNA-directed RNA polymerase II subunit RPB1 [Ar... 183 4e-44
ref|XP_002867052.1| hypothetical protein ARALYDRAFT_491060 [Arab... 183 4e-44
emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis thaliana] 183 4e-44
>gb|EMS47149.1| DNA-directed RNA polymerase II subunit RPB1 [Triticum urartu]
Length = 1846
Score = 147 bits (371), Expect(2) = 1e-49
Identities = 75/102 (73%), Positives = 88/102 (86%), Gaps = 3/102 (2%)
Frame = -1
Query: 643 ETDHLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLD--FGMTPSRS 470
E+D+LRGVTENIMLGQLAPIGTG C LYLN++ML+QAIELQLPSY+EGLD +GM + S
Sbjct: 1502 ESDYLRGVTENIMLGQLAPIGTGGCGLYLNEEMLKQAIELQLPSYVEGLDYGYGMASAHS 1561
Query: 469 PIMGTPYHE-GMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 347
I GTPYH+ GMMSP +LSPN R+SP++ AQFSPYVGGMAF
Sbjct: 1562 SISGTPYHDGGMMSP--VLSPNFRASPVTGAQFSPYVGGMAF 1601
Score = 75.9 bits (185), Expect(2) = 1e-49
Identities = 41/114 (35%), Positives = 69/114 (60%)
Frame = -3
Query: 344 SYFISGVQSIISRLQPVISWIQPDLSYI*PQLSWLQSNKSCIFSNQPILFPHITKL*PHF 165
SY +Q ++ LQP ++ +QPD++ + P ++ LQ + + + L P +T+L P+F
Sbjct: 1636 SYIALIIQPYVAWLQPDVTELQPDITELQPYVTELQPDITELQPYFTELLPDVTELQPYF 1695
Query: 164 PEL*PHFSKLQPHIPKL*PHLPELQPHFSGLQPHFPRLQPHFSSL*PYLAIIQP 3
EL P ++LQP+ +L P + ELQP+F+ L P LQP+F+ L P + +QP
Sbjct: 1696 TELLPDVTELQPYFTELLPDVTELQPYFTKLLPDVTELQPYFTELLPDVTELQP 1749
Score = 69.3 bits (168), Expect = 9e-10
Identities = 41/123 (33%), Positives = 71/123 (57%), Gaps = 7/123 (5%)
Frame = -3
Query: 350 ILSYFISGVQSIISRLQPVISWIQPDLSYI*PQLSWLQSNKSCIFSNQPILFPHITKL*P 171
I+ +++ +Q ++ LQP I+ +QP ++ + P ++ LQ + + + L P+ T+L P
Sbjct: 1641 IIQPYVAWLQPDVTELQPDITELQPYVTELQPDITELQPYFTELLPDVTELQPYFTELLP 1700
Query: 170 HFPEL*PHF-------SKLQPHIPKL*PHLPELQPHFSGLQPHFPRLQPHFSSL*PYLAI 12
EL P+F ++LQP+ KL P + ELQP+F+ L P LQP+F+ L P +
Sbjct: 1701 DVTELQPYFTELLPDVTELQPYFTKLLPDVTELQPYFTELLPDVTELQPYFTELLPDVTE 1760
Query: 11 IQP 3
+QP
Sbjct: 1761 LQP 1763
Score = 68.2 bits (165), Expect = 2e-09
Identities = 39/111 (35%), Positives = 63/111 (56%)
Frame = -3
Query: 335 ISGVQSIISRLQPVISWIQPDLSYI*PQLSWLQSNKSCIFSNQPILFPHITKL*PHFPEL 156
I+ +Q ++ LQP I+ +QP + + P ++ LQ + + + L P+ T+L P EL
Sbjct: 1660 ITELQPYVTELQPDITELQPYFTELLPDVTELQPYFTELLPDVTELQPYFTELLPDVTEL 1719
Query: 155 *PHFSKLQPHIPKL*PHLPELQPHFSGLQPHFPRLQPHFSSL*PYLAIIQP 3
P+F+KL P + +L P+ EL P + LQP+F L P + L PYL + P
Sbjct: 1720 QPYFTKLLPDVTELQPYFTELLPDVTELQPYFTELLPDVTELQPYLTELLP 1770
Score = 67.0 bits (162), Expect = 5e-09
Identities = 37/115 (32%), Positives = 66/115 (57%)
Frame = -3
Query: 347 LSYFISGVQSIISRLQPVISWIQPDLSYI*PQLSWLQSNKSCIFSNQPILFPHITKL*PH 168
L +++ +Q I+ LQP + + PD++ + P + L + + + L P +T+L P+
Sbjct: 1663 LQPYVTELQPDITELQPYFTELLPDVTELQPYFTELLPDVTELQPYFTELLPDVTELQPY 1722
Query: 167 FPEL*PHFSKLQPHIPKL*PHLPELQPHFSGLQPHFPRLQPHFSSL*PYLAIIQP 3
F +L P ++LQP+ +L P + ELQP+F+ L P LQP+ + L P + +QP
Sbjct: 1723 FTKLLPDVTELQPYFTELLPDVTELQPYFTELLPDVTELQPYLTELLPEVTELQP 1777
Score = 62.4 bits (150), Expect = 1e-07
Identities = 35/110 (31%), Positives = 60/110 (54%)
Frame = -3
Query: 335 ISGVQSIISRLQPVISWIQPDLSYI*PQLSWLQSNKSCIFSNQPILFPHITKL*PHFPEL 156
I+ +Q + L P ++ +QP + + P ++ LQ + + + L P+ TKL P EL
Sbjct: 1674 ITELQPYFTELLPDVTELQPYFTELLPDVTELQPYFTELLPDVTELQPYFTKLLPDVTEL 1733
Query: 155 *PHFSKLQPHIPKL*PHLPELQPHFSGLQPHFPRLQPHFSSL*PYLAIIQ 6
P+F++L P + +L P+ EL P + LQP+ L P + L PY+ +Q
Sbjct: 1734 QPYFTELLPDVTELQPYFTELLPDVTELQPYLTELLPEVTELQPYVTFVQ 1783
>gb|EMT02256.1| DNA-directed RNA polymerase II subunit RPB1 [Aegilops tauschii]
Length = 1784
Score = 145 bits (367), Expect(2) = 4e-49
Identities = 74/102 (72%), Positives = 88/102 (86%), Gaps = 3/102 (2%)
Frame = -1
Query: 643 ETDHLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLD--FGMTPSRS 470
E+D+LRGVTENIMLGQLAPIGTG C LYLN++ML+QAIELQLPSY+EGLD +GM + S
Sbjct: 1447 ESDYLRGVTENIMLGQLAPIGTGGCGLYLNEEMLKQAIELQLPSYVEGLDYGYGMASAHS 1506
Query: 469 PIMGTPYHE-GMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 347
I GTPYH+ GMMSP +LSPN ++SP++ AQFSPYVGGMAF
Sbjct: 1507 SISGTPYHDGGMMSP--VLSPNFQASPVTGAQFSPYVGGMAF 1546
Score = 75.9 bits (185), Expect(2) = 4e-49
Identities = 39/101 (38%), Positives = 64/101 (63%)
Frame = -3
Query: 305 LQPVISWIQPDLSYI*PQLSWLQSNKSCIFSNQPILFPHITKL*PHFPEL*PHFSKLQPH 126
+QP ++W+QPD++ + P ++ LQ F+ L P++T+L P+F EL P ++LQP+
Sbjct: 1587 IQPYVAWLQPDITELQPDITELQP----YFTE---LLPNVTELQPYFTELLPDVTELQPY 1639
Query: 125 IPKL*PHLPELQPHFSGLQPHFPRLQPHFSSL*PYLAIIQP 3
+L P + ELQP+F+ L P LQP+F+ L P + +QP
Sbjct: 1640 FTELLPDVTELQPYFTELLPDVTELQPYFTELLPDVTELQP 1680
Score = 72.4 bits (176), Expect = 1e-10
Identities = 41/114 (35%), Positives = 66/114 (57%)
Frame = -3
Query: 344 SYFISGVQSIISRLQPVISWIQPDLSYI*PQLSWLQSNKSCIFSNQPILFPHITKL*PHF 165
SY +Q ++ LQP I+ +QPD++ + P + L N + + L P +T+L P+F
Sbjct: 1581 SYIALIIQPYVAWLQPDITELQPDITELQPYFTELLPNVTELQPYFTELLPDVTELQPYF 1640
Query: 164 PEL*PHFSKLQPHIPKL*PHLPELQPHFSGLQPHFPRLQPHFSSL*PYLAIIQP 3
EL P ++LQP+ +L P + ELQP+F+ L P LQP+F+ L P + + P
Sbjct: 1641 TELLPDVTELQPYFTELLPDVTELQPYFTELLPDVTELQPYFTKLLPDVTGLLP 1694
Score = 60.8 bits (146), Expect = 3e-07
Identities = 33/103 (32%), Positives = 57/103 (55%)
Frame = -3
Query: 314 ISRLQPVISWIQPDLSYI*PQLSWLQSNKSCIFSNQPILFPHITKL*PHFPEL*PHFSKL 135
++ LQP + + PD++ + P + L + + + L P +T+L P+F EL P ++L
Sbjct: 1619 VTELQPYFTELLPDVTELQPYFTELLPDVTELQPYFTELLPDVTELQPYFTELLPDVTEL 1678
Query: 134 QPHIPKL*PHLPELQPHFSGLQPHFPRLQPHFSSL*PYLAIIQ 6
QP+ KL P + L P + LQP+ L P + L PY+ ++Q
Sbjct: 1679 QPYFTKLLPDVTGLLPDVTELQPYLTELLPEVTELQPYVTLVQ 1721
Score = 59.7 bits (143), Expect = 7e-07
Identities = 34/111 (30%), Positives = 61/111 (54%)
Frame = -3
Query: 335 ISGVQSIISRLQPVISWIQPDLSYI*PQLSWLQSNKSCIFSNQPILFPHITKL*PHFPEL 156
I+ +Q + L P ++ +QP + + P ++ LQ + + + L P+ T+L P EL
Sbjct: 1605 ITELQPYFTELLPNVTELQPYFTELLPDVTELQPYFTELLPDVTELQPYFTELLPDVTEL 1664
Query: 155 *PHFSKLQPHIPKL*PHLPELQPHFSGLQPHFPRLQPHFSSL*PYLAIIQP 3
P+F++L P + +L P+ +L P +GL P LQP+ + L P + +QP
Sbjct: 1665 QPYFTELLPDVTELQPYFTKLLPDVTGLLPDVTELQPYLTELLPEVTELQP 1715
>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 190 bits (482), Expect = 4e-46
Identities = 91/99 (91%), Positives = 94/99 (94%)
Frame = -1
Query: 643 ETDHLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPI 464
ETD LRGVTENIMLGQLAPIGTGDC+LYLNDQMLQ AIELQLPSYMEGLDFGMTPSRSPI
Sbjct: 1437 ETDFLRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTPSRSPI 1496
Query: 463 MGTPYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 347
GTPYH+GMMSPNYLLSPN R SPI+DAQFSPYVGGMAF
Sbjct: 1497 TGTPYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535
>ref|XP_007203058.1| hypothetical protein PRUPE_ppa000093mg [Prunus persica]
gi|462398589|gb|EMJ04257.1| hypothetical protein
PRUPE_ppa000093mg [Prunus persica]
Length = 1844
Score = 189 bits (480), Expect = 6e-46
Identities = 89/99 (89%), Positives = 95/99 (95%)
Frame = -1
Query: 643 ETDHLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPI 464
ETD+LRGVTENIMLGQLAPIGTGDC+LYLND+ML+ AIELQLPSYM+GLDFGMTPSRSP+
Sbjct: 1437 ETDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSRSPV 1496
Query: 463 MGTPYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 347
GTPYHEGMMSPNYLLSPN R SPISDAQFSPYVGGMAF
Sbjct: 1497 SGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [Amborella trichopoda]
gi|548833823|gb|ERM96260.1| hypothetical protein
AMTR_s00001p00152770 [Amborella trichopoda]
Length = 1844
Score = 188 bits (477), Expect = 1e-45
Identities = 91/99 (91%), Positives = 95/99 (95%)
Frame = -1
Query: 643 ETDHLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPI 464
E DHLRGVTENIMLGQLAPIGTGDC+LYLNDQMLQQAIELQLPSYMEG+DFGMTPSRSP+
Sbjct: 1440 EADHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGMDFGMTPSRSPM 1499
Query: 463 MGTPYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 347
GTPYHEGMMSP YLLSPN RSSPI+DAQFSPYVGGMAF
Sbjct: 1500 TGTPYHEGMMSP-YLLSPNMRSSPITDAQFSPYVGGMAF 1537
>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
sativus]
Length = 1853
Score = 187 bits (476), Expect = 2e-45
Identities = 89/99 (89%), Positives = 94/99 (94%)
Frame = -1
Query: 643 ETDHLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPI 464
ETDHLRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSY++GLDFGMTPSRSPI
Sbjct: 1437 ETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPI 1496
Query: 463 MGTPYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 347
GTPYHEGMMSPNYLLSPN R SPISDAQFSPYVGGMAF
Sbjct: 1497 SGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 187 bits (476), Expect = 2e-45
Identities = 89/99 (89%), Positives = 94/99 (94%)
Frame = -1
Query: 643 ETDHLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPI 464
ETDHLRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSY++GLDFGMTPSRSPI
Sbjct: 1437 ETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPI 1496
Query: 463 MGTPYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 347
GTPYHEGMMSPNYLLSPN R SPISDAQFSPYVGGMAF
Sbjct: 1497 SGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
brachyantha]
Length = 1855
Score = 186 bits (473), Expect = 4e-45
Identities = 88/99 (88%), Positives = 96/99 (96%)
Frame = -1
Query: 643 ETDHLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPI 464
E+D+LRGVTENIMLGQLAPIGTG C+LYLNDQMLQQAIELQLPSY+EGLDFGMTP+RSPI
Sbjct: 1437 ESDYLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPI 1496
Query: 463 MGTPYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 347
GTPYHEGMMSP+YLLSPN R+SPI+DAQFSPYVGGMAF
Sbjct: 1497 SGTPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 1535
>gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japonica Group]
Length = 1526
Score = 186 bits (473), Expect = 4e-45
Identities = 88/99 (88%), Positives = 96/99 (96%)
Frame = -1
Query: 643 ETDHLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPI 464
E+D+LRGVTENIMLGQLAPIGTG C+LYLNDQMLQQAIELQLPSY+EGLDFGMTP+RSPI
Sbjct: 1108 ESDYLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPI 1167
Query: 463 MGTPYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 347
GTPYHEGMMSP+YLLSPN R+SPI+DAQFSPYVGGMAF
Sbjct: 1168 SGTPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 1206
>ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Fragaria
vesca subsp. vesca]
Length = 1842
Score = 184 bits (468), Expect = 2e-44
Identities = 86/99 (86%), Positives = 94/99 (94%)
Frame = -1
Query: 643 ETDHLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPI 464
ETDHLRGVTENIMLGQLAPIGTGDC+LYLND+ML+ AIELQLPSY++GLDFGMTPSRSP+
Sbjct: 1435 ETDHLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYVDGLDFGMTPSRSPV 1494
Query: 463 MGTPYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 347
GTP+ +GMMSPNYLLSPN R SPISDAQFSPYVGGMAF
Sbjct: 1495 SGTPFRDGMMSPNYLLSPNMRMSPISDAQFSPYVGGMAF 1533
>gb|EXC35292.1| DNA-directed RNA polymerase II subunit rpb1 [Morus notabilis]
Length = 1866
Score = 184 bits (467), Expect = 2e-44
Identities = 87/99 (87%), Positives = 93/99 (93%)
Frame = -1
Query: 643 ETDHLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPI 464
ETD+LRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSYM+GLDFGMTPSRSP+
Sbjct: 1452 ETDYLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSRSPV 1511
Query: 463 MGTPYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 347
GTPYHEGMMSP YLLSPN R SPISDAQFSPYVGGMAF
Sbjct: 1512 SGTPYHEGMMSPGYLLSPNLRLSPISDAQFSPYVGGMAF 1550
>ref|XP_007157862.1| hypothetical protein PHAVU_002G104500g [Phaseolus vulgaris]
gi|561031277|gb|ESW29856.1| hypothetical protein
PHAVU_002G104500g [Phaseolus vulgaris]
Length = 1834
Score = 184 bits (467), Expect = 2e-44
Identities = 86/99 (86%), Positives = 94/99 (94%)
Frame = -1
Query: 643 ETDHLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPI 464
ETDHLRGVTENIMLGQLAPIGTG+C+LYLND+ML+ AIELQLPSYM+GLDFGMTP+RSPI
Sbjct: 1437 ETDHLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPI 1496
Query: 463 MGTPYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 347
GTPYHEG+MSP+YLLSPN R SP SDAQFSPYVGGMAF
Sbjct: 1497 SGTPYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535
>ref|XP_006282990.1| hypothetical protein CARUB_v10003976mg [Capsella rubella]
gi|482551695|gb|EOA15888.1| hypothetical protein
CARUB_v10003976mg [Capsella rubella]
Length = 1838
Score = 183 bits (465), Expect = 3e-44
Identities = 87/99 (87%), Positives = 93/99 (93%)
Frame = -1
Query: 643 ETDHLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPI 464
ETD LRGVTENIMLGQLAPIGTGDC LYLND+ML+ AIELQLPSYM+GL+FGMTP+RSPI
Sbjct: 1438 ETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPI 1497
Query: 463 MGTPYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 347
GTPYHEGMMSPNYLLSPN R SP+SDAQFSPYVGGMAF
Sbjct: 1498 SGTPYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAF 1536
>ref|XP_007046588.1| DNA-directed RNA polymerase II subunit RPB1 isoform 5 [Theobroma
cacao] gi|508698849|gb|EOX90745.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 5 [Theobroma cacao]
Length = 1512
Score = 183 bits (464), Expect = 4e-44
Identities = 85/99 (85%), Positives = 95/99 (95%)
Frame = -1
Query: 643 ETDHLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPI 464
E+D+LRGVTENIMLGQLAPIGTGDC+LYLND+ML+ AIELQLPSYMEGL+FGMTP+RSP+
Sbjct: 1088 ESDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPV 1147
Query: 463 MGTPYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 347
GTPYHEGMMSP+YLLSPN R SPI+DAQFSPYVGGMAF
Sbjct: 1148 SGTPYHEGMMSPSYLLSPNLRLSPITDAQFSPYVGGMAF 1186
>ref|XP_007046587.1| DNA-directed RNA polymerase II subunit RPB1 isoform 4 [Theobroma
cacao] gi|508698848|gb|EOX90744.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 4 [Theobroma cacao]
Length = 1511
Score = 183 bits (464), Expect = 4e-44
Identities = 85/99 (85%), Positives = 95/99 (95%)
Frame = -1
Query: 643 ETDHLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPI 464
E+D+LRGVTENIMLGQLAPIGTGDC+LYLND+ML+ AIELQLPSYMEGL+FGMTP+RSP+
Sbjct: 1088 ESDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPV 1147
Query: 463 MGTPYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 347
GTPYHEGMMSP+YLLSPN R SPI+DAQFSPYVGGMAF
Sbjct: 1148 SGTPYHEGMMSPSYLLSPNLRLSPITDAQFSPYVGGMAF 1186
>ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma
cacao] gi|590702281|ref|XP_007046585.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
gi|590702285|ref|XP_007046586.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698845|gb|EOX90741.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698846|gb|EOX90742.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698847|gb|EOX90743.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
Length = 1861
Score = 183 bits (464), Expect = 4e-44
Identities = 85/99 (85%), Positives = 95/99 (95%)
Frame = -1
Query: 643 ETDHLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPI 464
E+D+LRGVTENIMLGQLAPIGTGDC+LYLND+ML+ AIELQLPSYMEGL+FGMTP+RSP+
Sbjct: 1438 ESDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPV 1497
Query: 463 MGTPYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 347
GTPYHEGMMSP+YLLSPN R SPI+DAQFSPYVGGMAF
Sbjct: 1498 SGTPYHEGMMSPSYLLSPNLRLSPITDAQFSPYVGGMAF 1536
>emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana] gi|7270532|emb|CAB81489.1|
DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana]
Length = 1840
Score = 183 bits (464), Expect = 4e-44
Identities = 86/99 (86%), Positives = 93/99 (93%)
Frame = -1
Query: 643 ETDHLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPI 464
ETD LRGVTENIMLGQLAPIGTGDC LYLND+ML+ AIELQLPSYM+GL+FGMTP+RSP+
Sbjct: 1439 ETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPV 1498
Query: 463 MGTPYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 347
GTPYHEGMMSPNYLLSPN R SP+SDAQFSPYVGGMAF
Sbjct: 1499 SGTPYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAF 1537
>ref|NP_195305.2| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
gi|322510106|sp|P18616.3|NRPB1_ARATH RecName:
Full=DNA-directed RNA polymerase II subunit 1; AltName:
Full=DNA-directed RNA polymerase II subunit RPB1;
Short=DNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|332661173|gb|AEE86573.1| DNA-directed RNA polymerase
II subunit RPB1 [Arabidopsis thaliana]
Length = 1839
Score = 183 bits (464), Expect = 4e-44
Identities = 86/99 (86%), Positives = 93/99 (93%)
Frame = -1
Query: 643 ETDHLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPI 464
ETD LRGVTENIMLGQLAPIGTGDC LYLND+ML+ AIELQLPSYM+GL+FGMTP+RSP+
Sbjct: 1438 ETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPV 1497
Query: 463 MGTPYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 347
GTPYHEGMMSPNYLLSPN R SP+SDAQFSPYVGGMAF
Sbjct: 1498 SGTPYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAF 1536
>ref|XP_002867052.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
lyrata] gi|297312888|gb|EFH43311.1| hypothetical protein
ARALYDRAFT_491060 [Arabidopsis lyrata subsp. lyrata]
Length = 1839
Score = 183 bits (464), Expect = 4e-44
Identities = 86/99 (86%), Positives = 93/99 (93%)
Frame = -1
Query: 643 ETDHLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPI 464
ETD LRGVTENIMLGQLAPIGTGDC LYLND+ML+ AIELQLPSYM+GL+FGMTP+RSP+
Sbjct: 1439 ETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPV 1498
Query: 463 MGTPYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 347
GTPYHEGMMSPNYLLSPN R SP+SDAQFSPYVGGMAF
Sbjct: 1499 SGTPYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAF 1537
>emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 1860
Score = 183 bits (464), Expect = 4e-44
Identities = 86/99 (86%), Positives = 93/99 (93%)
Frame = -1
Query: 643 ETDHLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPI 464
ETD LRGVTENIMLGQLAPIGTGDC LYLND+ML+ AIELQLPSYM+GL+FGMTP+RSP+
Sbjct: 1459 ETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPV 1518
Query: 463 MGTPYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 347
GTPYHEGMMSPNYLLSPN R SP+SDAQFSPYVGGMAF
Sbjct: 1519 SGTPYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAF 1557