BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver25_contig00020700
         (2865 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI27412.3| unnamed protein product [Vitis vinifera]             1174   0.0  
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...  1174   0.0  
ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [S...  1151   0.0  
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...  1149   0.0  
ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, m...  1149   0.0  
ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theob...  1146   0.0  
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g...  1146   0.0  
gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japo...  1146   0.0  
ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun...  1142   0.0  
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1139   0.0  
emb|CAC95022.1| mitochondrial RNA polymerase [Nicotiana tabacum]     1139   0.0  
gb|EYU39350.1| hypothetical protein MIMGU_mgv1a000681mg [Mimulus...  1137   0.0  
ref|XP_002315996.2| DNA-directed RNA polymerase family protein [...  1137   0.0  
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]        1137   0.0  
ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prun...  1136   0.0  
ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, m...  1135   0.0  
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch...  1133   0.0  
gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus...  1131   0.0  
ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Popu...  1130   0.0  
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]  1130   0.0  

>emb|CBI27412.3| unnamed protein product [Vitis vinifera]
          Length = 810

 Score = 1174 bits (3036), Expect = 0.0
 Identities = 568/699 (81%), Positives = 628/699 (89%)
 Frame = -2

Query: 2840 GEPDLAAKEQAKLRNKVTNLMKKQKLKQVRHIVKGQDDVKPWGQDAQAKVGSRLIELLVQ 2661
            G  +   KEQ KLR KV+ LMKKQKL+QVR IVK QDD KPWGQDA  KVGSRLIELL++
Sbjct: 115  GGSNPVTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIE 174

Query: 2660 SAYIQPPVDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLVRQGMERTARHM 2481
            +AYIQPP DQL DGPPDIRPAF HTL+TV K+ QK +RRYG+IECDPLVR+G+E+TARHM
Sbjct: 175  TAYIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHM 234

Query: 2480 VIPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQIGPVFEALDTL 2301
            VIPYMPML+PP  W GYDKGAYLFLPSYVMR HGA+QQREA+K+ P+K + P FEAL+TL
Sbjct: 235  VIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTL 294

Query: 2300 GDIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELRNWRWXXXXXXK 2121
            G+ KWR+NKR+LGV+DR+WASGG+ A LV+R+DVPLPEEP  EDEAE+R W+W      K
Sbjct: 295  GNTKWRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKK 354

Query: 2120 ENSKRHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 1941
            ENS+RHS RCD+ELKLAVARKMK EDGF+YPHNLDFRGRAYPMHPYLNHLGSDLCRGILE
Sbjct: 355  ENSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 414

Query: 1940 FAEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFDSADRPLEGNKW 1761
            FAEGRPLGKSGLRWLKIHLAN++ AGGVDKLSYEGR+AFTE++L++IFDSADRPLEG +W
Sbjct: 415  FAEGRPLGKSGLRWLKIHLANVY-AGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRW 473

Query: 1760 WLEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDKLGAAAV 1581
            WL AEDPFQCLA C+NLSEALRSSSPETTISH+PVHQDGSCNGLQHYAALGRDKLGAAAV
Sbjct: 474  WLSAEDPFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAV 533

Query: 1580 NLVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWVNRKLVKQTVMT 1401
            NLVAGEKPADVYSGIA RV +IMQ DAQKDPA + N LRA+LLI +  V+RKLVKQTVMT
Sbjct: 534  NLVAGEKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQ--VDRKLVKQTVMT 591

Query: 1400 SVYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMFEAARSIMSWLG 1221
            SVYGVTYIGARDQIK+RLKER    +E E F  +CYAAK TLTALGEMFEAARSIMSWLG
Sbjct: 592  SVYGVTYIGARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLG 651

Query: 1220 DCAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQKTAF 1041
            DCAKVIA +NHPVRW TPLGLPVVQPYRKLGRHLIKTSLQVL+LQRETDKVMVKRQ+TAF
Sbjct: 652  DCAKVIASENHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAF 711

Query: 1040 PPNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYEQPI 861
            PPNFVHSLDGSHMMMTA+AC++AGLNFAGVHDSYWTHACDVDEMNRILREKFVELY  PI
Sbjct: 712  PPNFVHSLDGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPI 771

Query: 860  LENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 744
            LENLL  FQ+SFPTL FPPLPERGDF+L+EVLES YFFN
Sbjct: 772  LENLLEGFQKSFPTLNFPPLPERGDFDLREVLESPYFFN 810


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score = 1174 bits (3036), Expect = 0.0
 Identities = 568/699 (81%), Positives = 628/699 (89%)
 Frame = -2

Query: 2840 GEPDLAAKEQAKLRNKVTNLMKKQKLKQVRHIVKGQDDVKPWGQDAQAKVGSRLIELLVQ 2661
            G  +   KEQ KLR KV+ LMKKQKL+QVR IVK QDD KPWGQDA  KVGSRLIELL++
Sbjct: 283  GGSNPVTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIE 342

Query: 2660 SAYIQPPVDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLVRQGMERTARHM 2481
            +AYIQPP DQL DGPPDIRPAF HTL+TV K+ QK +RRYG+IECDPLVR+G+E+TARHM
Sbjct: 343  TAYIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHM 402

Query: 2480 VIPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQIGPVFEALDTL 2301
            VIPYMPML+PP  W GYDKGAYLFLPSYVMR HGA+QQREA+K+ P+K + P FEAL+TL
Sbjct: 403  VIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTL 462

Query: 2300 GDIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELRNWRWXXXXXXK 2121
            G+ KWR+NKR+LGV+DR+WASGG+ A LV+R+DVPLPEEP  EDEAE+R W+W      K
Sbjct: 463  GNTKWRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKK 522

Query: 2120 ENSKRHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 1941
            ENS+RHS RCD+ELKLAVARKMK EDGF+YPHNLDFRGRAYPMHPYLNHLGSDLCRGILE
Sbjct: 523  ENSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 582

Query: 1940 FAEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFDSADRPLEGNKW 1761
            FAEGRPLGKSGLRWLKIHLAN++ AGGVDKLSYEGR+AFTE++L++IFDSADRPLEG +W
Sbjct: 583  FAEGRPLGKSGLRWLKIHLANVY-AGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRW 641

Query: 1760 WLEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDKLGAAAV 1581
            WL AEDPFQCLA C+NLSEALRSSSPETTISH+PVHQDGSCNGLQHYAALGRDKLGAAAV
Sbjct: 642  WLSAEDPFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAV 701

Query: 1580 NLVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWVNRKLVKQTVMT 1401
            NLVAGEKPADVYSGIA RV +IMQ DAQKDPA + N LRA+LLI +  V+RKLVKQTVMT
Sbjct: 702  NLVAGEKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQ--VDRKLVKQTVMT 759

Query: 1400 SVYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMFEAARSIMSWLG 1221
            SVYGVTYIGARDQIK+RLKER    +E E F  +CYAAK TLTALGEMFEAARSIMSWLG
Sbjct: 760  SVYGVTYIGARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLG 819

Query: 1220 DCAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQKTAF 1041
            DCAKVIA +NHPVRW TPLGLPVVQPYRKLGRHLIKTSLQVL+LQRETDKVMVKRQ+TAF
Sbjct: 820  DCAKVIASENHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAF 879

Query: 1040 PPNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYEQPI 861
            PPNFVHSLDGSHMMMTA+AC++AGLNFAGVHDSYWTHACDVDEMNRILREKFVELY  PI
Sbjct: 880  PPNFVHSLDGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPI 939

Query: 860  LENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 744
            LENLL  FQ+SFPTL FPPLPERGDF+L+EVLES YFFN
Sbjct: 940  LENLLEGFQKSFPTLNFPPLPERGDFDLREVLESPYFFN 978


>ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
            gi|241924412|gb|EER97556.1| hypothetical protein
            SORBIDRAFT_02g039520 [Sorghum bicolor]
          Length = 976

 Score = 1151 bits (2977), Expect = 0.0
 Identities = 559/710 (78%), Positives = 636/710 (89%), Gaps = 3/710 (0%)
 Frame = -2

Query: 2864 SQDMEKE---GGEPDLAAKEQAKLRNKVTNLMKKQKLKQVRHIVKGQDDVKPWGQDAQAK 2694
            +++MEKE    G+ D+A KEQ +LR KVT+LMKKQKL+QVR+IVK QD+ +PWGQD QAK
Sbjct: 271  NKEMEKEEEAAGDTDIA-KEQQRLRKKVTDLMKKQKLRQVRNIVKNQDNSRPWGQDVQAK 329

Query: 2693 VGSRLIELLVQSAYIQPPVDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLV 2514
            VGSRLIEL + +A+IQPP  Q +DG PDIRPAF+H +RTV K+ QK SRRYG+I+CDPLV
Sbjct: 330  VGSRLIELFMDTAHIQPPASQSSDGLPDIRPAFRHEMRTVAKEQQKSSRRYGVIKCDPLV 389

Query: 2513 RQGMERTARHMVIPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQ 2334
            RQG++RTA+HMVIPYMPMLIPP  W GYDKGA+LFLPSYVMRTHGA+QQREAVK+ P++Q
Sbjct: 390  RQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPREQ 449

Query: 2333 IGPVFEALDTLGDIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELR 2154
            +  VFEAL+TLG  KWRVNKR+L +VDR+W+SGG+ A LV+R DVPLPE+P  EDE  ++
Sbjct: 450  MQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVPLPEKPDTEDETLIK 509

Query: 2153 NWRWXXXXXXKENSKRHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNH 1974
            NW+W      KENS+RHS RCD+ELKLAVARKMK E+GFYYPHNLDFRGRAYPMHPYLNH
Sbjct: 510  NWKWHLRSVKKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNH 569

Query: 1973 LGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFD 1794
            LGSDLCRGILEFAEGRPLGKSGL WLKIHLANL+ AGGVDKLSY+GR+AFTE++L+ IFD
Sbjct: 570  LGSDLCRGILEFAEGRPLGKSGLHWLKIHLANLY-AGGVDKLSYDGRVAFTENHLEEIFD 628

Query: 1793 SADRPLEGNKWWLEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAA 1614
            SADRPLEG +WWL AEDPFQCLAVCMNL+EALRSSSPETTISHIPVHQDGSCNGLQHYAA
Sbjct: 629  SADRPLEGKRWWLGAEDPFQCLAVCMNLTEALRSSSPETTISHIPVHQDGSCNGLQHYAA 688

Query: 1613 LGRDKLGAAAVNLVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWV 1434
            LGRDKLGA AVNLVAGEKPADVY+GIA RV EIM+ DAQKDP+ D +V RA+L++++  V
Sbjct: 689  LGRDKLGAIAVNLVAGEKPADVYTGIATRVLEIMRMDAQKDPSIDPDVARARLIVDQ--V 746

Query: 1433 NRKLVKQTVMTSVYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMF 1254
            +RKLVKQTVMTSVYGVTY+GARDQIK+RLKER    +EAE FG +CYAAKVTLTALGEMF
Sbjct: 747  DRKLVKQTVMTSVYGVTYVGARDQIKRRLKERGVIPDEAELFGASCYAAKVTLTALGEMF 806

Query: 1253 EAARSIMSWLGDCAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETD 1074
            +AAR IM+WLGDCAKVIA +N PVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETD
Sbjct: 807  QAARGIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETD 866

Query: 1073 KVMVKRQKTAFPPNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILR 894
            KVMVKRQ+TAFPPNFVHSLDGSHMMMTA+ACKR GLNFAGVHDSYWTHACDVD MN+ILR
Sbjct: 867  KVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILR 926

Query: 893  EKFVELYEQPILENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 744
            EKFVELY+ PILENLL SF++SFP L+FPPLPERGDF++KEVLES YFFN
Sbjct: 927  EKFVELYDTPILENLLESFEKSFPKLKFPPLPERGDFDMKEVLESPYFFN 976


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score = 1149 bits (2973), Expect = 0.0
 Identities = 560/707 (79%), Positives = 626/707 (88%), Gaps = 1/707 (0%)
 Frame = -2

Query: 2861 QDMEKEGGEPDLAAKEQAKLRNKVTNLMKKQKLKQVRHIVKGQDDVKPWGQDAQAKVGSR 2682
            +D   EGG  D    EQ KLR KVTNLMKKQKL   R IVKG D+ KPWG +A+AKVGSR
Sbjct: 332  KDKNVEGGGFDPVIHEQEKLRKKVTNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSR 391

Query: 2681 LIELLVQSAYIQPPVD-QLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLVRQG 2505
            LIELL+Q+AYIQPPVD QLAD PPDIRPAF HT +TV ++ +KI RR+G+IECDPLV++G
Sbjct: 392  LIELLMQTAYIQPPVDNQLADTPPDIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKG 451

Query: 2504 MERTARHMVIPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQIGP 2325
            +ERTARHMVIPY+PML+PP KW GYDKGA+LFLPSYVMRTHGA+QQREAVK+ P+ Q+ P
Sbjct: 452  LERTARHMVIPYVPMLVPPLKWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEP 511

Query: 2324 VFEALDTLGDIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELRNWR 2145
            VFEAL+TLG+ KWR+NKRL  VVDR+WA GG  A LV+R+DVPLPE+P  EDEA+LR W+
Sbjct: 512  VFEALNTLGNTKWRINKRLFDVVDRIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWK 571

Query: 2144 WXXXXXXKENSKRHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNHLGS 1965
            W      K NS+RHS RCD+ELKLAVARKMK EDGF+YPHNLDFRGRAYPMHPYLNHLGS
Sbjct: 572  WKVKSVKKANSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGS 631

Query: 1964 DLCRGILEFAEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFDSAD 1785
            DLCRGILEFAEGRPLG SGL WLKIHLANLF AGGVDKLS+EGRI FTE++LD+IFDSAD
Sbjct: 632  DLCRGILEFAEGRPLGSSGLHWLKIHLANLF-AGGVDKLSHEGRITFTENHLDDIFDSAD 690

Query: 1784 RPLEGNKWWLEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGR 1605
            RPLEG +WWL AEDPFQ LA C+NLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGR
Sbjct: 691  RPLEGKRWWLNAEDPFQFLAACINLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGR 750

Query: 1604 DKLGAAAVNLVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWVNRK 1425
            D+LGA AVNLVAGEKPADVYSGIA RV +IM+ DA+KDPA   + LRA++LI  N V+RK
Sbjct: 751  DQLGATAVNLVAGEKPADVYSGIAARVLDIMKRDAEKDPAIFPDALRARILI--NQVDRK 808

Query: 1424 LVKQTVMTSVYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMFEAA 1245
            LVKQTVMTSVYGVTYIGARDQIK+RLKER+   ++ E FG ACYAAK+TLTALGEMF+AA
Sbjct: 809  LVKQTVMTSVYGVTYIGARDQIKRRLKERNAIADDVELFGAACYAAKITLTALGEMFQAA 868

Query: 1244 RSIMSWLGDCAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVM 1065
            RSIMSWLGDCAK+IA +N PVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRET+ +M
Sbjct: 869  RSIMSWLGDCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETETIM 928

Query: 1064 VKRQKTAFPPNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILREKF 885
            VKRQ+TAFPPNFVHSLDGSHMMMTA+ACK+AGLNFAGVHDSYWTHACDVDEMNR+LREKF
Sbjct: 929  VKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDEMNRLLREKF 988

Query: 884  VELYEQPILENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 744
            V+LYE PILENLL SFQ+SFP LEFPPLPERGDF+L+EVLES YFFN
Sbjct: 989  VQLYETPILENLLESFQQSFPALEFPPLPERGDFDLREVLESPYFFN 1035


>ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like isoform
            X2 [Oryza brachyantha]
          Length = 839

 Score = 1149 bits (2972), Expect = 0.0
 Identities = 555/705 (78%), Positives = 631/705 (89%)
 Frame = -2

Query: 2858 DMEKEGGEPDLAAKEQAKLRNKVTNLMKKQKLKQVRHIVKGQDDVKPWGQDAQAKVGSRL 2679
            D E+E G  D+A KEQ +LR KVT+LMKK KL+QVR+IVK QD+ KPWGQD  AKVGSRL
Sbjct: 139  DNEEEVGCSDIA-KEQERLRKKVTDLMKKHKLRQVRYIVKKQDNSKPWGQDVHAKVGSRL 197

Query: 2678 IELLVQSAYIQPPVDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLVRQGME 2499
            IEL++++AYIQPP  Q ADGPPDIRPAF H +RTV K+ QK SRRYG+I+CDPLVRQG++
Sbjct: 198  IELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLD 257

Query: 2498 RTARHMVIPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQIGPVF 2319
            RTA+HMVIPYMPMLIPP  W GYDKGA+LFLPSYVMRTHGA+QQREAVK+ P++Q+  VF
Sbjct: 258  RTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVF 317

Query: 2318 EALDTLGDIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELRNWRWX 2139
            EALDTLG  KWRVNKR+L +VDR+W+SGG+ A LV+R DV LPE+P  EDEA+L+ WRW 
Sbjct: 318  EALDTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRSDVALPEKPDTEDEAKLKKWRWN 377

Query: 2138 XXXXXKENSKRHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDL 1959
                 KENS+RHS RCD+ELKLAVARKMK E+GFYYPHNLDFRGRAYPMHPYLNHLGSDL
Sbjct: 378  LKAAKKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDL 437

Query: 1958 CRGILEFAEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFDSADRP 1779
            CRG+LEFAEGRPLGKSGLRWLKIHLANL+ AGGVDKLSY+GRIAFTE++L++IFDSADRP
Sbjct: 438  CRGVLEFAEGRPLGKSGLRWLKIHLANLY-AGGVDKLSYDGRIAFTENHLEDIFDSADRP 496

Query: 1778 LEGNKWWLEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDK 1599
            LEG +WWL AEDPFQCLAVC+NL+EALRS SPET ISHIPVHQDGSCNGLQHYAALGRDK
Sbjct: 497  LEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDK 556

Query: 1598 LGAAAVNLVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWVNRKLV 1419
            LGA AVNLVAGEKPADVY+GIA RV EIM+ DA KDPA D +  RA++L+++  V+RKLV
Sbjct: 557  LGAIAVNLVAGEKPADVYTGIATRVLEIMRNDALKDPATDPDAARARMLVDQ--VDRKLV 614

Query: 1418 KQTVMTSVYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMFEAARS 1239
            KQTVMTSVYGVTY+GAR+QIK+RLKERD  G+++E F  +CYAAKVTLTALGEMF+AARS
Sbjct: 615  KQTVMTSVYGVTYVGAREQIKRRLKERDMIGDDSELFSASCYAAKVTLTALGEMFQAARS 674

Query: 1238 IMSWLGDCAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVK 1059
            IM+WLGDCAK+IA +N PV+WTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVK
Sbjct: 675  IMNWLGDCAKIIACENEPVKWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVK 734

Query: 1058 RQKTAFPPNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILREKFVE 879
            RQ+TAFPPNFVHSLDGSHMMMTA+ACKR GLNFAGVHDSYWTHACDVD MN+ILREKFVE
Sbjct: 735  RQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVE 794

Query: 878  LYEQPILENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 744
            LY+ PILENLL SF++SFP L+FPPLPERGDF+LK+VL S YFFN
Sbjct: 795  LYDTPILENLLGSFEKSFPELKFPPLPERGDFDLKDVLGSPYFFN 839


>ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|590698457|ref|XP_007045722.1| DNA-directed RNA
            polymerase isoform 1 [Theobroma cacao]
            gi|508709656|gb|EOY01553.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao] gi|508709657|gb|EOY01554.1|
            DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 996

 Score = 1146 bits (2965), Expect = 0.0
 Identities = 551/692 (79%), Positives = 623/692 (90%)
 Frame = -2

Query: 2819 KEQAKLRNKVTNLMKKQKLKQVRHIVKGQDDVKPWGQDAQAKVGSRLIELLVQSAYIQPP 2640
            K+Q KLR KVT L+KKQK+ QVR IVKG D  K WGQ+A  KVG RLI+LL+++AYIQPP
Sbjct: 308  KDQEKLRKKVTQLLKKQKVHQVRKIVKGHDTSKSWGQEAHVKVGCRLIQLLIENAYIQPP 367

Query: 2639 VDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLVRQGMERTARHMVIPYMPM 2460
            VDQL D PPDIRPAF H+L+T+ KDG K SRRYG+IECD LVR+G+E+TARHMVIPYMPM
Sbjct: 368  VDQLGDCPPDIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVRKGLEKTARHMVIPYMPM 427

Query: 2459 LIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQIGPVFEALDTLGDIKWRV 2280
            L+PP  W GYD+GAYLFLPSYVMRTHGAKQQRE VK+TP+KQ+ P+FEALDTLG+ KWR+
Sbjct: 428  LVPPQNWTGYDRGAYLFLPSYVMRTHGAKQQRETVKRTPRKQLEPIFEALDTLGNTKWRI 487

Query: 2279 NKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELRNWRWXXXXXXKENSKRHS 2100
            NKR+LGVVDR+WA+GG+ A LV+R+DVPLPE+P  EDEAE++ W+W      K+N++RHS
Sbjct: 488  NKRVLGVVDRLWANGGRVASLVDREDVPLPEKPDTEDEAEIQKWKWKVKAANKQNNERHS 547

Query: 2099 HRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPL 1920
             RCD+ELKLAVARKM+ EDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEFAEGRPL
Sbjct: 548  LRCDVELKLAVARKMRDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPL 607

Query: 1919 GKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFDSADRPLEGNKWWLEAEDP 1740
            GKSGLRWLKIHLANL+ AGGVDKLSYEGRIAFTE++LD+IFDSADRPLEG +WWL AEDP
Sbjct: 608  GKSGLRWLKIHLANLY-AGGVDKLSYEGRIAFTENHLDDIFDSADRPLEGRRWWLSAEDP 666

Query: 1739 FQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEK 1560
            FQCLA C+NLSEALRSSSPETTISH+PVHQDGSCNGLQHYAALGRDKLGAA+VNLVAGEK
Sbjct: 667  FQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAASVNLVAGEK 726

Query: 1559 PADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWVNRKLVKQTVMTSVYGVTY 1380
            PADVYSGIA RV +IM+ DA+KDPA + + L A+LLI  N V+RKLVKQTVMTSVYGVTY
Sbjct: 727  PADVYSGIAARVVDIMRRDAEKDPAINPHALHARLLI--NQVDRKLVKQTVMTSVYGVTY 784

Query: 1379 IGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMFEAARSIMSWLGDCAKVIA 1200
            IGARDQIK+RLKER    ++ E F  +CYAA+ TLTALGEMF+AARSIM+WLG+CAKVI+
Sbjct: 785  IGARDQIKRRLKERCAIADDTEMFVASCYAARTTLTALGEMFQAARSIMNWLGECAKVIS 844

Query: 1199 LKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQKTAFPPNFVHS 1020
             +N PVRW TPLGLPVVQPYR+LGRHLIKTSLQVLTLQRETDKVM KRQ+TAFPPNFVHS
Sbjct: 845  SENQPVRWVTPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMAKRQRTAFPPNFVHS 904

Query: 1019 LDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYEQPILENLLAS 840
            LDGSHMMMTA+ACK+AGLNFAGVHDSYWTHACDVDEMNRILREKFVELYE PILENLL S
Sbjct: 905  LDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYEAPILENLLES 964

Query: 839  FQESFPTLEFPPLPERGDFNLKEVLESTYFFN 744
            FQ+SFP+L FPPLPERGDF+L+EVLES YFFN
Sbjct: 965  FQKSFPSLNFPPLPERGDFDLREVLESPYFFN 996


>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
            gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
            Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
            single subunit RNA polymerase [Oryza sativa Japonica
            Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza
            sativa Japonica Group]
          Length = 1017

 Score = 1146 bits (2964), Expect = 0.0
 Identities = 554/705 (78%), Positives = 632/705 (89%)
 Frame = -2

Query: 2858 DMEKEGGEPDLAAKEQAKLRNKVTNLMKKQKLKQVRHIVKGQDDVKPWGQDAQAKVGSRL 2679
            D E+EGG+ D+A KEQ +LR KVT+LMKKQK++QVR+IVK QD+ KPWGQDA AKVGSRL
Sbjct: 317  DNEEEGGDSDIA-KEQERLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRL 375

Query: 2678 IELLVQSAYIQPPVDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLVRQGME 2499
            IEL++++AYIQPP  Q ADGPPDIRPAF H +RTV ++ QK SRRYG+I+CDPLVRQG++
Sbjct: 376  IELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLD 435

Query: 2498 RTARHMVIPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQIGPVF 2319
            RTA+HMVIPYMPMLIPP  W GYDKGA+LFLPSYVMRTHGA+QQR+AV++ P++Q+  VF
Sbjct: 436  RTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVF 495

Query: 2318 EALDTLGDIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELRNWRWX 2139
            EAL+TLG  KWRVNKR+L +VDR+W+SGG+ A LV+R DV LPE+P  EDE +L+ WRW 
Sbjct: 496  EALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDKLKKWRWT 555

Query: 2138 XXXXXKENSKRHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDL 1959
                 KENS+RHS RCD+ELKLAVARKMK EDGFYYPHNLDFRGRAYPMHPYLNHLGSDL
Sbjct: 556  LRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDL 615

Query: 1958 CRGILEFAEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFDSADRP 1779
            CRG+LEFAEGRPLGKSGLRWLKIHLANL+ AGGVDKLSY+GRIAFTE++L++IFDSADRP
Sbjct: 616  CRGVLEFAEGRPLGKSGLRWLKIHLANLY-AGGVDKLSYDGRIAFTENHLEDIFDSADRP 674

Query: 1778 LEGNKWWLEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDK 1599
            LEG +WWL AEDPFQCLAVC+NL+EALRS SPET ISHIPVHQDGSCNGLQHYAALGRDK
Sbjct: 675  LEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDK 734

Query: 1598 LGAAAVNLVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWVNRKLV 1419
            LGA AVNLVAGEKPADVY+GIA RV EIM+ DA KDPA D +  RA+LL+++  V+RKLV
Sbjct: 735  LGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPATDPDAARARLLLDQ--VDRKLV 792

Query: 1418 KQTVMTSVYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMFEAARS 1239
            KQTVMTSVYGVTY+GAR+QIK+RLKERD   +++E F  +CYAAKVTLTALGEMF+AARS
Sbjct: 793  KQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSELFSASCYAAKVTLTALGEMFQAARS 852

Query: 1238 IMSWLGDCAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVK 1059
            IM+WLGDCAKVIA +N PVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVK
Sbjct: 853  IMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVK 912

Query: 1058 RQKTAFPPNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILREKFVE 879
            RQ+TAFPPNFVHSLDGSHMMMTA+ACKR GLNFAGVHDSYWTHACDVD MN+ILREKFVE
Sbjct: 913  RQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVE 972

Query: 878  LYEQPILENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 744
            LY+ PILENLL SF++SFP L+FPPLPERGDF+L +VL S YFFN
Sbjct: 973  LYDTPILENLLESFEKSFPELKFPPLPERGDFDLTDVLGSPYFFN 1017


>gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
          Length = 983

 Score = 1146 bits (2964), Expect = 0.0
 Identities = 554/705 (78%), Positives = 632/705 (89%)
 Frame = -2

Query: 2858 DMEKEGGEPDLAAKEQAKLRNKVTNLMKKQKLKQVRHIVKGQDDVKPWGQDAQAKVGSRL 2679
            D E+EGG+ D+A KEQ +LR KVT+LMKKQK++QVR+IVK QD+ KPWGQDA AKVGSRL
Sbjct: 283  DNEEEGGDSDIA-KEQERLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRL 341

Query: 2678 IELLVQSAYIQPPVDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLVRQGME 2499
            IEL++++AYIQPP  Q ADGPPDIRPAF H +RTV ++ QK SRRYG+I+CDPLVRQG++
Sbjct: 342  IELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLD 401

Query: 2498 RTARHMVIPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQIGPVF 2319
            RTA+HMVIPYMPMLIPP  W GYDKGA+LFLPSYVMRTHGA+QQR+AV++ P++Q+  VF
Sbjct: 402  RTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVF 461

Query: 2318 EALDTLGDIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELRNWRWX 2139
            EAL+TLG  KWRVNKR+L +VDR+W+SGG+ A LV+R DV LPE+P  EDE +L+ WRW 
Sbjct: 462  EALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDKLKKWRWT 521

Query: 2138 XXXXXKENSKRHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDL 1959
                 KENS+RHS RCD+ELKLAVARKMK EDGFYYPHNLDFRGRAYPMHPYLNHLGSDL
Sbjct: 522  LRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDL 581

Query: 1958 CRGILEFAEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFDSADRP 1779
            CRG+LEFAEGRPLGKSGLRWLKIHLANL+ AGGVDKLSY+GRIAFTE++L++IFDSADRP
Sbjct: 582  CRGVLEFAEGRPLGKSGLRWLKIHLANLY-AGGVDKLSYDGRIAFTENHLEDIFDSADRP 640

Query: 1778 LEGNKWWLEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDK 1599
            LEG +WWL AEDPFQCLAVC+NL+EALRS SPET ISHIPVHQDGSCNGLQHYAALGRDK
Sbjct: 641  LEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDK 700

Query: 1598 LGAAAVNLVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWVNRKLV 1419
            LGA AVNLVAGEKPADVY+GIA RV EIM+ DA KDPA D +  RA+LL+++  V+RKLV
Sbjct: 701  LGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPATDPDAARARLLLDQ--VDRKLV 758

Query: 1418 KQTVMTSVYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMFEAARS 1239
            KQTVMTSVYGVTY+GAR+QIK+RLKERD   +++E F  +CYAAKVTLTALGEMF+AARS
Sbjct: 759  KQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSELFSASCYAAKVTLTALGEMFQAARS 818

Query: 1238 IMSWLGDCAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVK 1059
            IM+WLGDCAKVIA +N PVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVK
Sbjct: 819  IMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVK 878

Query: 1058 RQKTAFPPNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILREKFVE 879
            RQ+TAFPPNFVHSLDGSHMMMTA+ACKR GLNFAGVHDSYWTHACDVD MN+ILREKFVE
Sbjct: 879  RQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVE 938

Query: 878  LYEQPILENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 744
            LY+ PILENLL SF++SFP L+FPPLPERGDF+L +VL S YFFN
Sbjct: 939  LYDTPILENLLESFEKSFPELKFPPLPERGDFDLTDVLGSPYFFN 983


>ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
            gi|462422319|gb|EMJ26582.1| hypothetical protein
            PRUPE_ppa000780mg [Prunus persica]
          Length = 1006

 Score = 1142 bits (2953), Expect = 0.0
 Identities = 546/705 (77%), Positives = 621/705 (88%)
 Frame = -2

Query: 2858 DMEKEGGEPDLAAKEQAKLRNKVTNLMKKQKLKQVRHIVKGQDDVKPWGQDAQAKVGSRL 2679
            + EK   E +   KEQ +LR KV  L+K+QK++QVR IVK Q+D+KPWGQ+A  KVG RL
Sbjct: 305  EQEKLADEQEKLTKEQERLRKKVNKLIKRQKMQQVRGIVKEQEDLKPWGQEAHVKVGCRL 364

Query: 2678 IELLVQSAYIQPPVDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLVRQGME 2499
            I+LL+ +AYIQPPVDQ+ DGPPDIRPAF H L+T+ +D QK SRRYG+IECDP+VR+GME
Sbjct: 365  IQLLMDTAYIQPPVDQIGDGPPDIRPAFVHNLKTITRDTQKTSRRYGVIECDPIVRKGME 424

Query: 2498 RTARHMVIPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQIGPVF 2319
            +TARHMV+PYMPML+PP  W GYD+GAYLFLPSYVMRTHGAKQQRE VK+TP+KQ+ PVF
Sbjct: 425  KTARHMVMPYMPMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQQREVVKRTPRKQLEPVF 484

Query: 2318 EALDTLGDIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELRNWRWX 2139
            EALDTLG  KWRVNKR+LGV+DR+WASGG+ A LV+R+DVPLPEEP  EDEAE+R W+W 
Sbjct: 485  EALDTLGSTKWRVNKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWK 544

Query: 2138 XXXXXKENSKRHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDL 1959
                 KENS+RHS RCD+ELKLA +RKMK E+GFYYPHNLDFRGRAYPMHPYLNHLGSD+
Sbjct: 545  LKAAKKENSERHSQRCDIELKLAASRKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDM 604

Query: 1958 CRGILEFAEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFDSADRP 1779
            CRGILEF+EGR LGKSGLRWLKIHLANL+ AGGVDKLS++ R AFTE+++D IFDSADRP
Sbjct: 605  CRGILEFSEGRHLGKSGLRWLKIHLANLY-AGGVDKLSFDDRAAFTENHVDEIFDSADRP 663

Query: 1778 LEGNKWWLEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDK 1599
            LEG +WWL AEDPFQCLA C+NL EALRS SPETTIS++PVHQDGSCNGLQHYAALGRDK
Sbjct: 664  LEGRRWWLGAEDPFQCLAACINLCEALRSPSPETTISYMPVHQDGSCNGLQHYAALGRDK 723

Query: 1598 LGAAAVNLVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWVNRKLV 1419
            LGAAAVNLV G+KPADVYSGIA RV +IM+ DA+KDPA + N L A+LLI  N V+RKLV
Sbjct: 724  LGAAAVNLVGGDKPADVYSGIAARVLDIMRNDAEKDPATNPNALHARLLI--NQVDRKLV 781

Query: 1418 KQTVMTSVYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMFEAARS 1239
            KQTVMTSVYGVTY+GARDQIK+RLKER    ++   F  ACYAA+ TLTALGEMFEAARS
Sbjct: 782  KQTVMTSVYGVTYVGARDQIKRRLKERGSIADDTALFAAACYAARTTLTALGEMFEAARS 841

Query: 1238 IMSWLGDCAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVK 1059
            IMSWLG+CAKVIA +N PVRW TPLGLPVVQPYR+LGRHLIKTSLQVLTLQRETDKVMVK
Sbjct: 842  IMSWLGECAKVIASENQPVRWITPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMVK 901

Query: 1058 RQKTAFPPNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILREKFVE 879
            RQ+TAFPPNFVHSLDGSHMMMTA+ACK+AGLNFAGVHDSYWTHACD+DEMNRILREKFVE
Sbjct: 902  RQRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDIDEMNRILREKFVE 961

Query: 878  LYEQPILENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 744
            LYE PILENLL  FQ+SFPTL FPPLP+RGDF+L++VLES YFFN
Sbjct: 962  LYEAPILENLLEGFQQSFPTLTFPPLPDRGDFDLRDVLESPYFFN 1006


>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
            Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 1B; Flags: Precursor
          Length = 1002

 Score = 1139 bits (2946), Expect = 0.0
 Identities = 550/707 (77%), Positives = 628/707 (88%)
 Frame = -2

Query: 2864 SQDMEKEGGEPDLAAKEQAKLRNKVTNLMKKQKLKQVRHIVKGQDDVKPWGQDAQAKVGS 2685
            S D+E+  G+     KE+ +LR KV  LMKKQKL+QVR IVK QDD KPWGQD   KVG 
Sbjct: 304  SGDLEETPGD---MMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDNLVKVGC 360

Query: 2684 RLIELLVQSAYIQPPVDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLVRQG 2505
            RLI++L+++AYIQPP DQL DGPPDIRPAF HTL+TV+    K SRRYG+I+CDPLVR+G
Sbjct: 361  RLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTVET--MKGSRRYGVIQCDPLVRKG 418

Query: 2504 MERTARHMVIPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQIGP 2325
            +++TARHMVIPYMPML+PP  W+GYDKG YLFLPSY+MRTHGAKQQREAVK+ P+KQ+ P
Sbjct: 419  LDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEP 478

Query: 2324 VFEALDTLGDIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELRNWR 2145
            VF+ALDTLG+ KWRVN+++LG+VDR+WASGG+ A LV+R+DVPLPE P  EDEAE+R W+
Sbjct: 479  VFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKWK 538

Query: 2144 WXXXXXXKENSKRHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNHLGS 1965
            W      KEN +RHS RCD+ELKLAVARKMK EDGFYYPHNLDFRGRAYPMHPYLNHLGS
Sbjct: 539  WKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGS 598

Query: 1964 DLCRGILEFAEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFDSAD 1785
            DLCRGILEFAEGRPLG SGLRWLKIHLAN++  GGVDKLSYEGR+AF+E++L++IFDSA+
Sbjct: 599  DLCRGILEFAEGRPLGTSGLRWLKIHLANVYG-GGVDKLSYEGRVAFSENHLEDIFDSAE 657

Query: 1784 RPLEGNKWWLEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGR 1605
            RPLEG +WWL AEDPFQCLA C+N++EALRS SPET IS++P+HQDGSCNGLQHYAALGR
Sbjct: 658  RPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGR 717

Query: 1604 DKLGAAAVNLVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWVNRK 1425
            DKLGAAAVNLVAG+KPADVYSGIA RV +IM+ DA KDPA D NV+RA+LLI  N V+RK
Sbjct: 718  DKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLI--NQVDRK 775

Query: 1424 LVKQTVMTSVYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMFEAA 1245
            LVKQTVMTSVYGVTYIGARDQIKKRLKER    ++ E F  ACYAAK TLTALGEMFEAA
Sbjct: 776  LVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAA 835

Query: 1244 RSIMSWLGDCAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVM 1065
            RSIMSWLGDCAK+IA++NHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKVM
Sbjct: 836  RSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVM 895

Query: 1064 VKRQKTAFPPNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILREKF 885
            VKRQ+TAFPPNFVHSLDGSHMMMTA+ACK +GL+FAGVHDSYWTHACDVD+MN+ILREKF
Sbjct: 896  VKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILREKF 955

Query: 884  VELYEQPILENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 744
            VELY+ PILENLL SFQ+SFP L+FPPLPERGDF+L+EVLES YFFN
Sbjct: 956  VELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002


>emb|CAC95022.1| mitochondrial RNA polymerase [Nicotiana tabacum]
          Length = 715

 Score = 1139 bits (2946), Expect = 0.0
 Identities = 550/707 (77%), Positives = 628/707 (88%)
 Frame = -2

Query: 2864 SQDMEKEGGEPDLAAKEQAKLRNKVTNLMKKQKLKQVRHIVKGQDDVKPWGQDAQAKVGS 2685
            S D+E+  G+     KE+ +LR KV  LMKKQKL+QVR IVK QDD KPWGQD   KVG 
Sbjct: 17   SGDLEETPGD---MMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDNLVKVGC 73

Query: 2684 RLIELLVQSAYIQPPVDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLVRQG 2505
            RLI++L+++AYIQPP DQL DGPPDIRPAF HTL+TV+    K SRRYG+I+CDPLVR+G
Sbjct: 74   RLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTVET--MKGSRRYGVIQCDPLVRKG 131

Query: 2504 MERTARHMVIPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQIGP 2325
            +++TARHMVIPYMPML+PP  W+GYDKG YLFLPSY+MRTHGAKQQREAVK+ P+KQ+ P
Sbjct: 132  LDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEP 191

Query: 2324 VFEALDTLGDIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELRNWR 2145
            VF+ALDTLG+ KWRVN+++LG+VDR+WASGG+ A LV+R+DVPLPE P  EDEAE+R W+
Sbjct: 192  VFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKWK 251

Query: 2144 WXXXXXXKENSKRHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNHLGS 1965
            W      KEN +RHS RCD+ELKLAVARKMK EDGFYYPHNLDFRGRAYPMHPYLNHLGS
Sbjct: 252  WKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGS 311

Query: 1964 DLCRGILEFAEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFDSAD 1785
            DLCRGILEFAEGRPLG SGLRWLKIHLAN++  GGVDKLSYEGR+AF+E++L++IFDSA+
Sbjct: 312  DLCRGILEFAEGRPLGTSGLRWLKIHLANVYG-GGVDKLSYEGRVAFSENHLEDIFDSAE 370

Query: 1784 RPLEGNKWWLEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGR 1605
            RPLEG +WWL AEDPFQCLA C+N++EALRS SPET IS++P+HQDGSCNGLQHYAALGR
Sbjct: 371  RPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGR 430

Query: 1604 DKLGAAAVNLVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWVNRK 1425
            DKLGAAAVNLVAG+KPADVYSGIA RV +IM+ DA KDPA D NV+RA+LLI  N V+RK
Sbjct: 431  DKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLI--NQVDRK 488

Query: 1424 LVKQTVMTSVYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMFEAA 1245
            LVKQTVMTSVYGVTYIGARDQIKKRLKER    ++ E F  ACYAAK TLTALGEMFEAA
Sbjct: 489  LVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAA 548

Query: 1244 RSIMSWLGDCAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVM 1065
            RSIMSWLGDCAK+IA++NHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKVM
Sbjct: 549  RSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVM 608

Query: 1064 VKRQKTAFPPNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILREKF 885
            VKRQ+TAFPPNFVHSLDGSHMMMTA+ACK +GL+FAGVHDSYWTHACDVD+MN+ILREKF
Sbjct: 609  VKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILREKF 668

Query: 884  VELYEQPILENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 744
            VELY+ PILENLL SFQ+SFP L+FPPLPERGDF+L+EVLES YFFN
Sbjct: 669  VELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 715


>gb|EYU39350.1| hypothetical protein MIMGU_mgv1a000681mg [Mimulus guttatus]
          Length = 1021

 Score = 1137 bits (2942), Expect = 0.0
 Identities = 545/707 (77%), Positives = 625/707 (88%)
 Frame = -2

Query: 2864 SQDMEKEGGEPDLAAKEQAKLRNKVTNLMKKQKLKQVRHIVKGQDDVKPWGQDAQAKVGS 2685
            ++D E EG +PD   +EQAKLR KVTNLMKKQKL+ VR IV  Q + + WGQDA+AKVGS
Sbjct: 318  TKDAETEGDKPDENIQEQAKLREKVTNLMKKQKLRAVRQIVNRQIESQAWGQDAKAKVGS 377

Query: 2684 RLIELLVQSAYIQPPVDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLVRQG 2505
            RLIEL++Q+AYIQPP  Q A+GPPDI+PAF HT +TV K+ +  SRRYG+I+CDPLVR+G
Sbjct: 378  RLIELIIQTAYIQPPASQSAEGPPDIKPAFLHTFKTVAKEIKSNSRRYGVIQCDPLVRKG 437

Query: 2504 MERTARHMVIPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQIGP 2325
            +ERTARHMVIPYMPML+PP KW GYDKGAYL+LPSYVMRTHGA+QQR+ VK+ P++Q+ P
Sbjct: 438  LERTARHMVIPYMPMLVPPVKWTGYDKGAYLYLPSYVMRTHGARQQRDTVKRAPREQLKP 497

Query: 2324 VFEALDTLGDIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELRNWR 2145
            VFEALDTLG  KWRVNKR+L ++DR+WASGG+   LV+RDD+ LPE+P  EDE+ L+ W+
Sbjct: 498  VFEALDTLGSTKWRVNKRVLSIIDRIWASGGRLGDLVDRDDILLPEQPDTEDESLLQKWK 557

Query: 2144 WXXXXXXKENSKRHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNHLGS 1965
            W      KENS+RHS RCD ELKLAVARKMK E+GF+YPHN+DFRGRAYPMHP+LNHLGS
Sbjct: 558  WKVKSIKKENSERHSQRCDTELKLAVARKMKEEEGFFYPHNVDFRGRAYPMHPHLNHLGS 617

Query: 1964 DLCRGILEFAEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFDSAD 1785
            D+CRGILEF+EG+PLGKSGLRWLKIH+ANLF A GVDKLS+EGRI F E++LD++FDSAD
Sbjct: 618  DICRGILEFSEGKPLGKSGLRWLKIHVANLF-ANGVDKLSHEGRICFIENHLDDVFDSAD 676

Query: 1784 RPLEGNKWWLEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGR 1605
            RPLEG +WWL AEDPFQCLA C+NL EALR+ SPETTISHIPVHQDGSCNGLQHYAALGR
Sbjct: 677  RPLEGKRWWLNAEDPFQCLAACINLVEALRNPSPETTISHIPVHQDGSCNGLQHYAALGR 736

Query: 1604 DKLGAAAVNLVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWVNRK 1425
            DKLGAAAVNLVAGEKPADVYSGIA RV +IM+EDAQKDP+   + L A+LLI  N V+RK
Sbjct: 737  DKLGAAAVNLVAGEKPADVYSGIAARVLDIMKEDAQKDPSVCPDALHARLLI--NQVDRK 794

Query: 1424 LVKQTVMTSVYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMFEAA 1245
            LVKQTVMTSVYGVTYIGARDQIK+RLKERD  G+E + FG ACYAAK+TLTALG+MFEAA
Sbjct: 795  LVKQTVMTSVYGVTYIGARDQIKRRLKERDAFGDETQIFGAACYAAKITLTALGQMFEAA 854

Query: 1244 RSIMSWLGDCAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVM 1065
            RSIM+WLGDCAK+IA +N PVRWTTPLGLPVVQPYRK+GRHLIKTSLQVLTLQRETDKVM
Sbjct: 855  RSIMNWLGDCAKIIASENEPVRWTTPLGLPVVQPYRKVGRHLIKTSLQVLTLQRETDKVM 914

Query: 1064 VKRQKTAFPPNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILREKF 885
            VKRQ+TAFPPNFVHSLDGSHMMMTA+AC+  GL FAGVHDSYWTHACDVDEM+RILREKF
Sbjct: 915  VKRQRTAFPPNFVHSLDGSHMMMTAIACRNGGLTFAGVHDSYWTHACDVDEMSRILREKF 974

Query: 884  VELYEQPILENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 744
            VELYE PILENLL  FQ+SFPTL FPPLP+RGDF+L++VLES YFFN
Sbjct: 975  VELYEAPILENLLEGFQQSFPTLTFPPLPDRGDFDLRDVLESPYFFN 1021


>ref|XP_002315996.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|550329816|gb|EEF02167.2| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 862

 Score = 1137 bits (2941), Expect = 0.0
 Identities = 548/698 (78%), Positives = 615/698 (88%)
 Frame = -2

Query: 2837 EPDLAAKEQAKLRNKVTNLMKKQKLKQVRHIVKGQDDVKPWGQDAQAKVGSRLIELLVQS 2658
            E +   KEQ KLR KVT LMKKQK+ QVR IVKG DD  PWGQ+A  KVGSRLI+L++++
Sbjct: 168  EGEKLTKEQEKLRKKVTTLMKKQKVHQVRRIVKGHDDSMPWGQEAHLKVGSRLIQLMIET 227

Query: 2657 AYIQPPVDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLVRQGMERTARHMV 2478
            AYIQPP+DQ+ DGPPDIRPAF HTL+T+ KD QK SRRYG+IECDPLVR+G+E++ARHMV
Sbjct: 228  AYIQPPIDQIGDGPPDIRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHMV 287

Query: 2477 IPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQIGPVFEALDTLG 2298
            IPYMPML+PP  W GYD+GAY FLPSYVMR HGAKQQR A+K+  + Q+ PVF+ALDTLG
Sbjct: 288  IPYMPMLVPPLNWTGYDQGAYFFLPSYVMRIHGAKQQRVAIKRASRNQLEPVFKALDTLG 347

Query: 2297 DIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELRNWRWXXXXXXKE 2118
            + KWRVNKR+LGV+DR+WASGG  AGLV+R+DVPLPEEP  EDEAE+R WRW      KE
Sbjct: 348  NTKWRVNKRILGVIDRIWASGGHLAGLVDREDVPLPEEPQTEDEAEIRKWRWKVKSVKKE 407

Query: 2117 NSKRHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEF 1938
            NS+RHS RCD+ELKLAVARKMK E+GFYYPHN+DFRGRAYPMHPYLNHLGSD+CRGILEF
Sbjct: 408  NSERHSQRCDVELKLAVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDVCRGILEF 467

Query: 1937 AEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFDSADRPLEGNKWW 1758
            AEGRPLGKSGLRWLKIHLANL+ AGGVDKLSY+GRI+FTE++LD+IFDSADRPLEG +WW
Sbjct: 468  AEGRPLGKSGLRWLKIHLANLY-AGGVDKLSYDGRISFTENHLDDIFDSADRPLEGQRWW 526

Query: 1757 LEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDKLGAAAVN 1578
            L AEDPFQCLAVC+NLSEALRS SPET ISH PVHQDGSCNGLQHYAALGRDKLGAAAVN
Sbjct: 527  LGAEDPFQCLAVCINLSEALRSPSPETAISHTPVHQDGSCNGLQHYAALGRDKLGAAAVN 586

Query: 1577 LVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWVNRKLVKQTVMTS 1398
            LV G KPADVYSGIA RV +IM+ DA+ DPA + N + AKLLI  N V+RKLVKQTVMTS
Sbjct: 587  LVGGGKPADVYSGIAARVLDIMRRDAENDPAINPNSVHAKLLI--NQVDRKLVKQTVMTS 644

Query: 1397 VYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMFEAARSIMSWLGD 1218
            VYGVTYIGARDQIK+RLKER    ++ + +  ACYAAK TLTAL EMFE AR IM+WLG+
Sbjct: 645  VYGVTYIGARDQIKRRLKERCNIADDPQLYSAACYAAKTTLTALEEMFEGARGIMAWLGE 704

Query: 1217 CAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQKTAFP 1038
            CAKVIA +N PV+WTTP GLPVVQPYR+LGR LIKTSLQVLTLQRETDKVMVKRQ+TAFP
Sbjct: 705  CAKVIASENQPVQWTTPFGLPVVQPYRQLGRQLIKTSLQVLTLQRETDKVMVKRQRTAFP 764

Query: 1037 PNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYEQPIL 858
            PNFVHSLDGSHMMMTA+ACK AGLNFAGVHDSYWTHACDVDEMNRILREKFVELYE PIL
Sbjct: 765  PNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPIL 824

Query: 857  ENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 744
            ENLL SFQ SFP L+FPPLPERGDF+L++VL+STYFFN
Sbjct: 825  ENLLESFQSSFPNLKFPPLPERGDFDLRDVLQSTYFFN 862


>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
          Length = 1002

 Score = 1137 bits (2941), Expect = 0.0
 Identities = 549/707 (77%), Positives = 628/707 (88%)
 Frame = -2

Query: 2864 SQDMEKEGGEPDLAAKEQAKLRNKVTNLMKKQKLKQVRHIVKGQDDVKPWGQDAQAKVGS 2685
            S D+E+  G+     KE+ +LR KV  LMKKQKL+QVR IVK QDD KPWGQD   KVG 
Sbjct: 304  SGDLEETPGD---MMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDNLVKVGC 360

Query: 2684 RLIELLVQSAYIQPPVDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLVRQG 2505
            RLI++L+++AYIQPP DQL DGPPDIRPAF HTL+TV+    K SRRYG+I+CDPLVR+G
Sbjct: 361  RLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTVET--MKGSRRYGVIQCDPLVRKG 418

Query: 2504 MERTARHMVIPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQIGP 2325
            +++TARHMVIPYMPML+PP  W+GYDKG YLFLPSY+MRTHGAKQQREAVK+ P+KQ+ P
Sbjct: 419  LDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEP 478

Query: 2324 VFEALDTLGDIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELRNWR 2145
            VF+ALDTLG+ KWRVN+++LG+V+R+WASGG+ A LV+R+DVPLPE P  EDEAE+R W+
Sbjct: 479  VFQALDTLGNTKWRVNRKVLGIVNRIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKWK 538

Query: 2144 WXXXXXXKENSKRHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNHLGS 1965
            W      KEN +RHS RCD+ELKLAVARKMK EDGFYYPHNLDFRGRAYPMHPYLNHLGS
Sbjct: 539  WKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGS 598

Query: 1964 DLCRGILEFAEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFDSAD 1785
            DLCRGILEFAEGRPLG SGLRWLKIHLAN++  GGVDKLSYEGR+AF+E++L++IFDSA+
Sbjct: 599  DLCRGILEFAEGRPLGTSGLRWLKIHLANVYG-GGVDKLSYEGRVAFSENHLEDIFDSAE 657

Query: 1784 RPLEGNKWWLEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGR 1605
            RPLEG +WWL AEDPFQCLA C+N++EALRS SPET IS++P+HQDGSCNGLQHYAALGR
Sbjct: 658  RPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGR 717

Query: 1604 DKLGAAAVNLVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWVNRK 1425
            DKLGAAAVNLVAG+KPADVYSGIA RV +IM+ DA KDPA D NV+RA+LLI  N V+RK
Sbjct: 718  DKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLI--NQVDRK 775

Query: 1424 LVKQTVMTSVYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMFEAA 1245
            LVKQTVMTSVYGVTYIGARDQIKKRLKER    ++ E F  ACYAAK TLTALGEMFEAA
Sbjct: 776  LVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAA 835

Query: 1244 RSIMSWLGDCAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVM 1065
            RSIMSWLGDCAK+IA++NHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKVM
Sbjct: 836  RSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVM 895

Query: 1064 VKRQKTAFPPNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILREKF 885
            VKRQ+TAFPPNFVHSLDGSHMMMTA+ACK +GL+FAGVHDSYWTHACDVD+MN+ILREKF
Sbjct: 896  VKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILREKF 955

Query: 884  VELYEQPILENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 744
            VELY+ PILENLL SFQ+SFP L+FPPLPERGDF+L+EVLES YFFN
Sbjct: 956  VELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002


>ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
            gi|462411068|gb|EMJ16117.1| hypothetical protein
            PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score = 1136 bits (2938), Expect = 0.0
 Identities = 553/705 (78%), Positives = 614/705 (87%)
 Frame = -2

Query: 2858 DMEKEGGEPDLAAKEQAKLRNKVTNLMKKQKLKQVRHIVKGQDDVKPWGQDAQAKVGSRL 2679
            D ++E GE D A KE+ KL  KVTNLMKKQKLK VR IV   D  K W  +A+AKVGSRL
Sbjct: 323  DKDQENGESDAAKKEREKLNKKVTNLMKKQKLKAVRGIVSKHDASKSWSLEARAKVGSRL 382

Query: 2678 IELLVQSAYIQPPVDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLVRQGME 2499
            IELL Q+A+IQPP DQLADGPPDIRPAF HT RTV KD +  SRRYG+IECDPLV +G+E
Sbjct: 383  IELLTQTAFIQPPADQLADGPPDIRPAFVHTFRTVAKDAKNASRRYGVIECDPLVLKGLE 442

Query: 2498 RTARHMVIPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQIGPVF 2319
            +TARHMVIPYMPML+PP  W GYDKG Y FLPSYVMR HGA+QQREA+K+TP++Q+ PVF
Sbjct: 443  KTARHMVIPYMPMLVPPLNWTGYDKGGYFFLPSYVMRIHGARQQREAIKRTPREQLEPVF 502

Query: 2318 EALDTLGDIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELRNWRWX 2139
            +ALD LG+ +WRVNKR+L VVDR+WASGG  A LV+R+DVPLPEEP  EDE  L+ W+W 
Sbjct: 503  KALDALGNTRWRVNKRVLSVVDRIWASGGHLADLVDRNDVPLPEEPDTEDETLLKKWKWK 562

Query: 2138 XXXXXKENSKRHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDL 1959
                 KEN +RHS RCD ELKLAVARKMK E+GFYYPHNLDFRGRAYPMHPYLNHLGSD+
Sbjct: 563  VKSVKKENMERHSQRCDTELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDV 622

Query: 1958 CRGILEFAEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFDSADRP 1779
            CRGILEF EGRPLGKSGL WLKIHLANL+ AGGVDKLS EGRIAFTE++LD+IFDS D+P
Sbjct: 623  CRGILEFQEGRPLGKSGLSWLKIHLANLY-AGGVDKLSLEGRIAFTENHLDDIFDSVDKP 681

Query: 1778 LEGNKWWLEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDK 1599
            LEG +WWL+AEDPFQCLAVC+NL+EALRSSSPET ISHIPVHQDGSCNGLQHYAALGRDK
Sbjct: 682  LEGRRWWLKAEDPFQCLAVCINLAEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDK 741

Query: 1598 LGAAAVNLVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWVNRKLV 1419
            LGAA+VNLV GEKPADVYSGIA RV EIM+ DAQKDP      LRAKLLI  N V+RKLV
Sbjct: 742  LGAASVNLVTGEKPADVYSGIAVRVLEIMRRDAQKDPVVFPEALRAKLLI--NQVDRKLV 799

Query: 1418 KQTVMTSVYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMFEAARS 1239
            KQTVMTSVYGVTYIGARDQIK+RLKER    ++AE FG ACYAAK+TLTALGEMFEAAR 
Sbjct: 800  KQTVMTSVYGVTYIGARDQIKRRLKERGSISDDAEIFGCACYAAKITLTALGEMFEAARG 859

Query: 1238 IMSWLGDCAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVK 1059
            IMSWLG+CAK+IA +N PVRWTTPLGLPVVQPYRK GRHLIKTSLQVLTLQRET+KVMVK
Sbjct: 860  IMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKFGRHLIKTSLQVLTLQRETEKVMVK 919

Query: 1058 RQKTAFPPNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILREKFVE 879
            RQ+TAFPPNFVHSLD SHMMMTA+ACK+AGL+FAGVHDSYWTHACDVDEMN+ILREKFV+
Sbjct: 920  RQRTAFPPNFVHSLDSSHMMMTAIACKKAGLSFAGVHDSYWTHACDVDEMNKILREKFVQ 979

Query: 878  LYEQPILENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 744
            LYE PILENLL SFQ+SFP L FPPLPERGDF+L++VLES YFFN
Sbjct: 980  LYETPILENLLESFQQSFPALTFPPLPERGDFDLRDVLESPYFFN 1024


>ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
            [Setaria italica]
          Length = 1005

 Score = 1135 bits (2936), Expect = 0.0
 Identities = 549/706 (77%), Positives = 628/706 (88%)
 Frame = -2

Query: 2861 QDMEKEGGEPDLAAKEQAKLRNKVTNLMKKQKLKQVRHIVKGQDDVKPWGQDAQAKVGSR 2682
            ++ E+E  + D+A KEQ +LR KVT+LMKKQKL+QVR IVK QDD +PWGQDA AKVGSR
Sbjct: 304  KENEEEIFDSDIA-KEQQRLRKKVTDLMKKQKLRQVRKIVKNQDDSRPWGQDAHAKVGSR 362

Query: 2681 LIELLVQSAYIQPPVDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLVRQGM 2502
            LIEL +++A+IQPP  Q +DG PDIRPAF+H +RTV K+ QK SRRYG+I+CDPLVRQG+
Sbjct: 363  LIELFIETAHIQPPASQSSDGLPDIRPAFRHEMRTVPKEQQKHSRRYGVIKCDPLVRQGL 422

Query: 2501 ERTARHMVIPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQIGPV 2322
            +RTA+HMVIPYMPMLIPP  W GYDKGA+LFLPSYVMRTHGA+QQREAVK+ P++Q+  V
Sbjct: 423  DRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSV 482

Query: 2321 FEALDTLGDIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELRNWRW 2142
            FEAL+TLG  KWRVNKR+L ++DR+W+SGG+ A LV+R DVPLPE+P  EDE  L+ WRW
Sbjct: 483  FEALNTLGSTKWRVNKRVLSIIDRIWSSGGRLADLVDRTDVPLPEKPDTEDETVLKKWRW 542

Query: 2141 XXXXXXKENSKRHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNHLGSD 1962
                  K NS+RHS RCD+ELKLAVARKMK E+GFYYPHNLDFRGRAYPMHPYLNHLGSD
Sbjct: 543  HTRSVKKGNSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSD 602

Query: 1961 LCRGILEFAEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFDSADR 1782
            LCRG+LEFAEGRPLG+SGLRWLKIHLANL+ AGGVDKLSY GRIAF E++L+ IFDSADR
Sbjct: 603  LCRGVLEFAEGRPLGESGLRWLKIHLANLY-AGGVDKLSYAGRIAFAENHLEEIFDSADR 661

Query: 1781 PLEGNKWWLEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRD 1602
            PLEG +WWL AEDPFQCLAVCMNL+EALRS SPE TISHIPVHQDGSCNGLQHYAALGRD
Sbjct: 662  PLEGKRWWLGAEDPFQCLAVCMNLTEALRSPSPEATISHIPVHQDGSCNGLQHYAALGRD 721

Query: 1601 KLGAAAVNLVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWVNRKL 1422
            KLGA AVNLVAGEKPADVYSGIA RV EIM+ D+QKDP+ D +  RA+L++++  V+RKL
Sbjct: 722  KLGAIAVNLVAGEKPADVYSGIATRVVEIMRRDSQKDPSTDPDAARARLILDQ--VDRKL 779

Query: 1421 VKQTVMTSVYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMFEAAR 1242
            VKQTVMTSVYGVTY+GAR+QIK+RLKER    ++AE FG +CYAAKVTLTALGEMF+AAR
Sbjct: 780  VKQTVMTSVYGVTYVGAREQIKRRLKERGVIADDAELFGASCYAAKVTLTALGEMFQAAR 839

Query: 1241 SIMSWLGDCAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMV 1062
            SIM+WLGDCAKVIA +N PV+WTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMV
Sbjct: 840  SIMNWLGDCAKVIACENEPVKWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMV 899

Query: 1061 KRQKTAFPPNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILREKFV 882
            KRQ+TAFPPNFVHSLDGSHMMMTA+ACKR GLNFAGVHDSYWTHACDVD MN+ILREKFV
Sbjct: 900  KRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFV 959

Query: 881  ELYEQPILENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 744
            ELY+ PILENLL SF++SFP L+FPPLPERGDF++K+VLES YFFN
Sbjct: 960  ELYDTPILENLLESFEKSFPKLKFPPLPERGDFDMKDVLESPYFFN 1005


>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like [Citrus sinensis]
          Length = 1026

 Score = 1133 bits (2930), Expect = 0.0
 Identities = 550/703 (78%), Positives = 621/703 (88%)
 Frame = -2

Query: 2852 EKEGGEPDLAAKEQAKLRNKVTNLMKKQKLKQVRHIVKGQDDVKPWGQDAQAKVGSRLIE 2673
            ++EG E +    EQ KLR KVT+L+KKQKL  VR IVKGQDD KPWGQDA+AKVGSR+IE
Sbjct: 327  DEEGDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIE 386

Query: 2672 LLVQSAYIQPPVDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLVRQGMERT 2493
            LL Q+AYIQ P DQLAD PPDI PAF H LRTV K+ +  S++YG+IEC+PLV +G+ERT
Sbjct: 387  LLTQTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERT 446

Query: 2492 ARHMVIPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQIGPVFEA 2313
            ARHMVIPYMPML+PP KW GYDKGA+ FLPSYVMRTHGAKQQR+ VK+TP+KQ+ PVFEA
Sbjct: 447  ARHMVIPYMPMLVPPVKWTGYDKGAHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEA 506

Query: 2312 LDTLGDIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELRNWRWXXX 2133
            LDTLG+ KWRVN R+L V+DR+W+ GG+ A LV+R+DVPLPE+P  EDEA+LR W+W   
Sbjct: 507  LDTLGNTKWRVNNRVLSVLDRIWSCGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVR 566

Query: 2132 XXXKENSKRHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 1953
               KEN +RHS RCD+ELKL+VARKMK E+GFYYPHN+DFRGRAYPMHPYLNHLGSDLCR
Sbjct: 567  NVKKENRERHSQRCDIELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCR 626

Query: 1952 GILEFAEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFDSADRPLE 1773
            GILEFAEGR LGKSGL WLKIHLANL+ AGGVDKLS+EGR+AFTE++LD+IFDSAD+PLE
Sbjct: 627  GILEFAEGRTLGKSGLHWLKIHLANLY-AGGVDKLSHEGRLAFTENHLDDIFDSADKPLE 685

Query: 1772 GNKWWLEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDKLG 1593
            G +WWL+AEDPFQCLAVC+NL+EALRSSSPET ISHIPVHQDGSCNGLQHYAALGRD LG
Sbjct: 686  GRRWWLKAEDPFQCLAVCINLTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLG 745

Query: 1592 AAAVNLVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWVNRKLVKQ 1413
            AAAVNLVA EKPADVYSGIA RV  I+Q DAQ+DPA   + LRAKLL+ +  V+RKLVKQ
Sbjct: 746  AAAVNLVAREKPADVYSGIAARVLVIIQRDAQRDPAVFPDALRAKLLLSQ--VDRKLVKQ 803

Query: 1412 TVMTSVYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMFEAARSIM 1233
            TVMTSVYGVTYIGARDQIK+RLKER    EEAE FG +CYAAKVTLTALGEMF+AAR IM
Sbjct: 804  TVMTSVYGVTYIGARDQIKRRLKERGAPMEEAELFGASCYAAKVTLTALGEMFQAARGIM 863

Query: 1232 SWLGDCAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQ 1053
            SWLG+CAK+IA +N PVRWTTPLGLPVVQPYRKLGRH +KTSLQ+LTLQRET+KVMVKRQ
Sbjct: 864  SWLGECAKIIASENQPVRWTTPLGLPVVQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQ 923

Query: 1052 KTAFPPNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILREKFVELY 873
            +TAFPPNFVHSLDGSHMMMTA+AC++AGL FAGVHDSYWTHACDVDEMNRILREKFVELY
Sbjct: 924  RTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAGVHDSYWTHACDVDEMNRILREKFVELY 983

Query: 872  EQPILENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 744
            E PILENLL SFQ+SFP L FPPLPERGDF+L+EVL S YFFN
Sbjct: 984  EMPILENLLDSFQKSFPKLVFPPLPERGDFDLREVLGSPYFFN 1026


>gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus guttatus]
          Length = 983

 Score = 1131 bits (2925), Expect = 0.0
 Identities = 544/697 (78%), Positives = 622/697 (89%)
 Frame = -2

Query: 2834 PDLAAKEQAKLRNKVTNLMKKQKLKQVRHIVKGQDDVKPWGQDAQAKVGSRLIELLVQSA 2655
            PD  AKEQ +LR KV  LMKKQK++QVR+IV+ QDD+KPWGQDAQ KVG RLI++L Q+A
Sbjct: 292  PDPEAKEQDRLRKKVKILMKKQKVQQVRNIVRHQDDLKPWGQDAQVKVGCRLIQILTQTA 351

Query: 2654 YIQPPVDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLVRQGMERTARHMVI 2475
            YIQPPVDQ  DG PDIRPAF HTL+ V+    K SRRYG+IECDPLVR+GME+TARHMVI
Sbjct: 352  YIQPPVDQRDDGAPDIRPAFVHTLKCVET--LKGSRRYGVIECDPLVRKGMEKTARHMVI 409

Query: 2474 PYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQIGPVFEALDTLGD 2295
            PYMPML+PP  W GY++GAYLFLPSY+MRTHGAKQQREAVK+TP++++ P+F+AL+TLG+
Sbjct: 410  PYMPMLVPPLNWTGYERGAYLFLPSYMMRTHGAKQQREAVKRTPKQELEPIFQALNTLGN 469

Query: 2294 IKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELRNWRWXXXXXXKEN 2115
             KWRVNKR+L VVDR+WA+GG+ A LV+R+D+PLPEEP  EDEAE++ W+W      K N
Sbjct: 470  TKWRVNKRILSVVDRIWANGGRLADLVDREDLPLPEEPDTEDEAEIKKWKWKVKAVKKVN 529

Query: 2114 SKRHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFA 1935
            S+RHS RCD+ELKLAVARK+K E+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFA
Sbjct: 530  SERHSQRCDIELKLAVARKIKEEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFA 589

Query: 1934 EGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFDSADRPLEGNKWWL 1755
            EGRPLGKSGL+WLK+HLANL+  GGVDK SY+GRI+FTE+++++IFDSADRPLEG +WWL
Sbjct: 590  EGRPLGKSGLQWLKVHLANLYG-GGVDKFSYDGRISFTENHMEDIFDSADRPLEGKRWWL 648

Query: 1754 EAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDKLGAAAVNL 1575
             AEDPFQCLA CM+L+EALRS  PE+T+S+IPVHQDGSCNGLQHYAALGRDKLGAAAVNL
Sbjct: 649  GAEDPFQCLATCMSLTEALRSPYPESTVSYIPVHQDGSCNGLQHYAALGRDKLGAAAVNL 708

Query: 1574 VAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWVNRKLVKQTVMTSV 1395
            VAG+KPADVYSGIA RV +IM+ DA KDPA D NV+RA+LLI  N V+RKLVKQTVMTSV
Sbjct: 709  VAGDKPADVYSGIAARVLDIMKRDAAKDPADDPNVMRARLLI--NQVDRKLVKQTVMTSV 766

Query: 1394 YGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMFEAARSIMSWLGDC 1215
            YGVTYIGARDQIK+RLKER    ++ E F  ACYAAK TLTALGEMFEAARSIMSWLGDC
Sbjct: 767  YGVTYIGARDQIKRRLKERASMEDDTELFACACYAAKTTLTALGEMFEAARSIMSWLGDC 826

Query: 1214 AKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQKTAFPP 1035
            AK+IA +NHPVRWTTPLGLPVVQPYRKLGRH+IKTSLQVLTLQRETDKVM KRQ+TAFPP
Sbjct: 827  AKIIATENHPVRWTTPLGLPVVQPYRKLGRHMIKTSLQVLTLQRETDKVMAKRQRTAFPP 886

Query: 1034 NFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYEQPILE 855
            NFVHSLDGSHMMMTA+AC  AGL+FAGVHDSYWTHACDVD+MN ILREKFVELYE PILE
Sbjct: 887  NFVHSLDGSHMMMTAIACSEAGLSFAGVHDSYWTHACDVDKMNEILREKFVELYEAPILE 946

Query: 854  NLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 744
            NLL  FQ+SFP L+FPPLPERGDF+L+EVL+STYFFN
Sbjct: 947  NLLDGFQQSFPKLKFPPLPERGDFDLREVLDSTYFFN 983


>ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Populus trichocarpa]
            gi|550332836|gb|EEE88785.2| hypothetical protein
            POPTR_0008s11200g [Populus trichocarpa]
          Length = 988

 Score = 1130 bits (2924), Expect = 0.0
 Identities = 544/698 (77%), Positives = 615/698 (88%)
 Frame = -2

Query: 2837 EPDLAAKEQAKLRNKVTNLMKKQKLKQVRHIVKGQDDVKPWGQDAQAKVGSRLIELLVQS 2658
            E +  +KEQ KLR KVT L+KKQK++QVR IVKG DD +PWGQ+   KVGSRLI+L++++
Sbjct: 294  EGEKLSKEQEKLRKKVTTLIKKQKVQQVRRIVKGHDDSRPWGQEEHVKVGSRLIQLMIET 353

Query: 2657 AYIQPPVDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLVRQGMERTARHMV 2478
            AYIQPP+DQ+ DGPPDIRPAF HTL+T+ KD QK SRRYG+IECDPLVR+G+E++ARHMV
Sbjct: 354  AYIQPPIDQIGDGPPDIRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHMV 413

Query: 2477 IPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQIGPVFEALDTLG 2298
            IPYMPML+PP  W GYD+GA+LFLPSYVMR HG+KQQR+AVK+  + Q+ PVF+ALDTLG
Sbjct: 414  IPYMPMLVPPLNWTGYDQGAHLFLPSYVMRIHGSKQQRDAVKRASRNQLEPVFKALDTLG 473

Query: 2297 DIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELRNWRWXXXXXXKE 2118
            + KWR+NKR+L VVDR+WASGG  AGLV+R+D PLPEEP  EDEAE+R W W      KE
Sbjct: 474  NTKWRINKRVLVVVDRIWASGGHLAGLVDREDAPLPEEPQTEDEAEIRKWTWKVRSVKKE 533

Query: 2117 NSKRHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEF 1938
            NS+RHS RCD+ELKLAVARKMK E+GFYYPHNLDFRGRAYPMHPYLNHLGSD+CRGILEF
Sbjct: 534  NSERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDVCRGILEF 593

Query: 1937 AEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFDSADRPLEGNKWW 1758
            AEGRPLGKSGLRWLKIHLANL+ AGGVDKLSY+GRI+FTE++LD+IFDSAD+PLEG +WW
Sbjct: 594  AEGRPLGKSGLRWLKIHLANLY-AGGVDKLSYDGRISFTENHLDDIFDSADQPLEGRRWW 652

Query: 1757 LEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDKLGAAAVN 1578
            L AEDPFQCLA C+NLSEALRS SPET  SH PVHQDGSCNGLQHYAALGRDKLGAAAVN
Sbjct: 653  LGAEDPFQCLAACINLSEALRSPSPETATSHTPVHQDGSCNGLQHYAALGRDKLGAAAVN 712

Query: 1577 LVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWVNRKLVKQTVMTS 1398
            LV GEKPADVYSGIA RV +IMQ DA+KDPA + N + AKLL+  N V+RKLVKQTVMTS
Sbjct: 713  LVGGEKPADVYSGIATRVLDIMQRDAEKDPAINPNSVHAKLLV--NQVDRKLVKQTVMTS 770

Query: 1397 VYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMFEAARSIMSWLGD 1218
            VYGVTYIGARDQIK+RLKER    ++ + +  ACYAAK TL AL EMFE AR IM+WLG+
Sbjct: 771  VYGVTYIGARDQIKRRLKERCIIADDPQLYSAACYAAKTTLMALEEMFEGARGIMAWLGE 830

Query: 1217 CAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQKTAFP 1038
            CAKVIA +N PVRWTTPLGLPVVQPYR+LGRHLIKTSLQVLTL+RETDKVMVKRQ+TAFP
Sbjct: 831  CAKVIASENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLTLKRETDKVMVKRQRTAFP 890

Query: 1037 PNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYEQPIL 858
            PNFVHSLDGSHMMMTA+ACK AGLNFAGVHDSYWTHACDVDEMNRILREKFVELYE PIL
Sbjct: 891  PNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYEAPIL 950

Query: 857  ENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 744
            ENLL SFQ SFP L+FPPLPERG F+LK+VL STYFFN
Sbjct: 951  ENLLESFQSSFPNLKFPPLPERGVFDLKDVLRSTYFFN 988


>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score = 1130 bits (2922), Expect = 0.0
 Identities = 546/707 (77%), Positives = 627/707 (88%)
 Frame = -2

Query: 2864 SQDMEKEGGEPDLAAKEQAKLRNKVTNLMKKQKLKQVRHIVKGQDDVKPWGQDAQAKVGS 2685
            S D+E   G+     KE+ +LR KV  LMKKQKL+QVR IVK QDD KPWGQD   KVG 
Sbjct: 304  SGDLEDTPGD---IMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGC 360

Query: 2684 RLIELLVQSAYIQPPVDQLADGPPDIRPAFKHTLRTVKKDGQKISRRYGMIECDPLVRQG 2505
            RLI++L+++AYIQPP DQL D PPDIRPAF HTL+TV+    K SRRYG+I+CDPLVR+G
Sbjct: 361  RLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVET--MKGSRRYGVIQCDPLVRKG 418

Query: 2504 MERTARHMVIPYMPMLIPPAKWIGYDKGAYLFLPSYVMRTHGAKQQREAVKQTPQKQIGP 2325
            +++TARHMVIPYMPML+PP  W+GYDKGAYLFLPSY+MRTHGAKQQREAVK+ P+KQ+ P
Sbjct: 419  LDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEP 478

Query: 2324 VFEALDTLGDIKWRVNKRLLGVVDRVWASGGKDAGLVERDDVPLPEEPAMEDEAELRNWR 2145
            VF+ALDTLG+ KWR+N+++LG+VDR+WASGG+ A LV+R+DVPLPEEP  EDEA++R W+
Sbjct: 479  VFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQIRKWK 538

Query: 2144 WXXXXXXKENSKRHSHRCDLELKLAVARKMKAEDGFYYPHNLDFRGRAYPMHPYLNHLGS 1965
            W      KEN +RHS RCD+ELKLAVARKMK EDGFYYPHNLDFRGRAYPMHPYLNHLGS
Sbjct: 539  WKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGS 598

Query: 1964 DLCRGILEFAEGRPLGKSGLRWLKIHLANLFAAGGVDKLSYEGRIAFTESNLDNIFDSAD 1785
            DLCRGILEFAEGRPLGKSGLRWLKIHLAN++  GGVDKLSYEGR+AF+E+++++IFDSA+
Sbjct: 599  DLCRGILEFAEGRPLGKSGLRWLKIHLANVYG-GGVDKLSYEGRVAFSENHVEDIFDSAE 657

Query: 1784 RPLEGNKWWLEAEDPFQCLAVCMNLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGR 1605
            RPLEG +WWL AEDPFQCLA C+N++EALRS SPET IS++P+HQDGSCNGLQHYAALGR
Sbjct: 658  RPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGR 717

Query: 1604 DKLGAAAVNLVAGEKPADVYSGIADRVREIMQEDAQKDPAADSNVLRAKLLIERNWVNRK 1425
            D LGAAAVNLVAG+KPADVYSGIA RV +IM+ DA KDPA D NV+RA+LLI  N V+RK
Sbjct: 718  DTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLI--NQVDRK 775

Query: 1424 LVKQTVMTSVYGVTYIGARDQIKKRLKERDPSGEEAEQFGLACYAAKVTLTALGEMFEAA 1245
            LVKQTVMTSVYGVTYIGARDQIK+RLKER    ++ E F  ACYAAK TLTALGEMFEAA
Sbjct: 776  LVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAA 835

Query: 1244 RSIMSWLGDCAKVIALKNHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVM 1065
            RSIMSWLGDCAK+IA++NHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKVM
Sbjct: 836  RSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVM 895

Query: 1064 VKRQKTAFPPNFVHSLDGSHMMMTALACKRAGLNFAGVHDSYWTHACDVDEMNRILREKF 885
            VKRQ+TAFPPNFVHSLDGSHMMMTA+ACK +GL+FAGVHDSYWTHA DVD+MN+ILREKF
Sbjct: 896  VKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKF 955

Query: 884  VELYEQPILENLLASFQESFPTLEFPPLPERGDFNLKEVLESTYFFN 744
            VELY+ PILENLL SFQ+SFP L+FPPLPERGDF+L+EVLES YFFN
Sbjct: 956  VELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002