BLASTX nr result
ID: Papaver25_contig00020367
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver25_contig00020367
(2538 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s... 406 e-153
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr... 406 e-153
gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Mor... 406 e-149
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 427 e-143
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu... 394 e-141
ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Sela... 418 e-141
ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [A... 411 e-139
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s... 437 e-139
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g... 427 e-138
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo... 427 e-138
gb|EMT01541.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg... 407 e-137
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s... 427 e-136
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s... 424 e-135
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s... 424 e-135
ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi... 405 e-135
ref|XP_004505923.1| PREDICTED: DNA-directed RNA polymerase III s... 357 e-135
ref|XP_004505924.1| PREDICTED: DNA-directed RNA polymerase III s... 357 e-135
gb|EMS65169.1| DNA-directed RNA polymerase III subunit rpc1 [Tri... 407 e-132
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S... 422 e-132
ref|XP_002974416.1| hypothetical protein SELMODRAFT_442419 [Sela... 385 e-130
>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
PREDICTED: DNA-directed RNA polymerase III subunit
rpc1-like isoform X2 [Citrus sinensis]
Length = 1404
Score = 406 bits (1043), Expect(4) = e-153
Identities = 248/498 (49%), Positives = 312/498 (62%), Gaps = 18/498 (3%)
Frame = +2
Query: 1097 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMDPSKMEGKDGSPLNFDRLYMK 1246
GYMSRRLIKALEDLSIQYDN QFLYGDDGMDP+ MEGK G PLNFDRL MK
Sbjct: 879 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMK 938
Query: 1247 AKATCPARGHSSLSPTEIKKLADDRLSELIMTPEGGFKEGEEAFNEGKEAFKKSLLDXXX 1426
KATCP G LSP ++ ++ + +L+ GKE+ ++ L+
Sbjct: 939 VKATCPPAGQRYLSPQQVSEIVEKQLAAY-----------------GKESCSEAFLNSLR 981
Query: 1427 XXXXXXXXXLYKCITSLTNTRKGLQLDEEKMGSQSLEKVSANVAGITSQQLQVFLETCIS 1606
L K I + + + D++ SQ LE+V+ +GIT +QL+VF++TC S
Sbjct: 982 KFFEGQQDKLDKKIKFVED----IGWDDK---SQILEEVTHKTSGITEKQLEVFIQTCFS 1034
Query: 1607 RYYTKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKNI 1786
RY+ KR EPGTQMTLKTFHFAGVASMN+T GVPRIKEIINGAK I
Sbjct: 1035 RYHVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRI 1094
Query: 1787 STPIITAKLENDRDVRSARRVKGCIEKTVLGEIAESMKIVLESRGAYILVKLDM--IRCS 1960
STPIITA+LE + + +AR VKG IEKT+LG++A+S+KIV+ SR A I++ LDM I+ +
Sbjct: 1095 STPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDA 1154
Query: 1961 QLNISAISVQQXXXXXXXXXXXXXXXXXXXXXYVKVVDDRSLKILSPEEDRIKLHFALHS 2140
L I+A V++ ++KV+D R L+I P D+ K+HF L+S
Sbjct: 1155 HLCINADIVKE--------SIVQTPKIKLKQQHIKVLDFRKLEIF-PPVDKSKIHFELYS 1205
Query: 2141 LKSMLPEVVVMGVPTVERVIVSEKQK---KGKGTGE---YEVFVEGTNLLAVMGIPGVKG 2302
LK++LP V+V G+ TVERV+++EK+K K K GE Y + VEGT L AVMG G+ G
Sbjct: 1206 LKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDG 1265
Query: 2303 EETTSNHIIEVQQTLGXXXXXXXXXXXXQHIMKEYKMSIDVRHMMLLADVMTSNGEVLGI 2482
+T SNHI EVQQTLG MK + MSID RHMMLLAD+MT GEVLGI
Sbjct: 1266 CKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGI 1325
Query: 2483 TRFGIQKMKESVLMLASF 2536
TRFGIQKM +SVLMLASF
Sbjct: 1326 TRFGIQKMDKSVLMLASF 1343
Score = 97.1 bits (240), Expect(4) = e-153
Identities = 49/77 (63%), Positives = 57/77 (74%), Gaps = 11/77 (14%)
Frame = +1
Query: 187 QPVELWTGKQLFSVLVRPRAQMRVYVNLTVTEKSYKQGK-----------ETLCPNEGFV 333
+PVELWTGKQLFSVL+RP A MRVYVNLTV EK+Y ET+CPN+GFV
Sbjct: 589 KPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFV 648
Query: 334 YIQNSELI*GQVGEATL 384
Y +NSELI GQ+G+ATL
Sbjct: 649 YFRNSELISGQLGKATL 665
Score = 92.4 bits (228), Expect(4) = e-153
Identities = 65/187 (34%), Positives = 86/187 (45%)
Frame = +1
Query: 430 QINDALLQKYKNGTLIVQPGCDAAQTLESELTYLLNGVREKTGKVNHVMWLHFFDSYLY* 609
++ + +++Y G L ++PGCDAAQTLE+ +T +LN +RE G
Sbjct: 732 EVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAG----------------- 774
Query: 610 *MMAYNIFISLVKTGKICMGXXXXXXXXXXXXXXTLEEQPSDYVAVWIQRVPR*YQSDHC 789
K CMG + P + Q C
Sbjct: 775 ---------------KACMGSLPWRNSPLIMSQCGSKGSPINIS-----------QMVAC 808
Query: 790 LCWSAISWGFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLE 969
+ ++ G A +GF DR+LPHFPR + P AKGFV NSF +GL ATE FFHT M G E
Sbjct: 809 VGQQSVG-GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHT-MGGRE 866
Query: 970 GLGDTAV 990
GL DTAV
Sbjct: 867 GLVDTAV 873
Score = 20.8 bits (42), Expect(4) = e-153
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +2
Query: 362 GKLVKLL*CSLDW--NHGFLIGIEN 430
G + +L S W NHGF IGI++
Sbjct: 688 GCMNRLAKLSARWIGNHGFSIGIDD 712
>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
gi|557526635|gb|ESR37941.1| hypothetical protein
CICLE_v10027681mg [Citrus clementina]
Length = 1397
Score = 406 bits (1043), Expect(2) = e-153
Identities = 248/498 (49%), Positives = 312/498 (62%), Gaps = 18/498 (3%)
Frame = +2
Query: 1097 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMDPSKMEGKDGSPLNFDRLYMK 1246
GYMSRRLIKALEDLSIQYDN QFLYGDDGMDP+ MEGK G PLNFDRL MK
Sbjct: 872 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMK 931
Query: 1247 AKATCPARGHSSLSPTEIKKLADDRLSELIMTPEGGFKEGEEAFNEGKEAFKKSLLDXXX 1426
KATCP G LSP ++ ++ + +L+ GKE+ ++ L+
Sbjct: 932 VKATCPPAGQRYLSPQQVSEIVEKQLAAY-----------------GKESCSEAFLNSLR 974
Query: 1427 XXXXXXXXXLYKCITSLTNTRKGLQLDEEKMGSQSLEKVSANVAGITSQQLQVFLETCIS 1606
L K I + + + D++ SQ LE+V+ +GIT +QL+VF++TC S
Sbjct: 975 KFFEGQQDKLDKKIKFVED----IGWDDK---SQILEEVTHKTSGITEKQLEVFIQTCFS 1027
Query: 1607 RYYTKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKNI 1786
RY+ KR EPGTQMTLKTFHFAGVASMN+T GVPRIKEIINGAK I
Sbjct: 1028 RYHVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRI 1087
Query: 1787 STPIITAKLENDRDVRSARRVKGCIEKTVLGEIAESMKIVLESRGAYILVKLDM--IRCS 1960
STPIITA+LE + + +AR VKG IEKT+LG++A+S+KIV+ SR A I++ LDM I+ +
Sbjct: 1088 STPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDA 1147
Query: 1961 QLNISAISVQQXXXXXXXXXXXXXXXXXXXXXYVKVVDDRSLKILSPEEDRIKLHFALHS 2140
L I+A V++ ++KV+D R L+I P D+ K+HF L+S
Sbjct: 1148 HLCINADIVKE--------SIVQTPKIKLKQQHIKVLDFRKLEIF-PPVDKSKIHFELYS 1198
Query: 2141 LKSMLPEVVVMGVPTVERVIVSEKQK---KGKGTGE---YEVFVEGTNLLAVMGIPGVKG 2302
LK++LP V+V G+ TVERV+++EK+K K K GE Y + VEGT L AVMG G+ G
Sbjct: 1199 LKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDG 1258
Query: 2303 EETTSNHIIEVQQTLGXXXXXXXXXXXXQHIMKEYKMSIDVRHMMLLADVMTSNGEVLGI 2482
+T SNHI EVQQTLG MK + MSID RHMMLLAD+MT GEVLGI
Sbjct: 1259 CKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGI 1318
Query: 2483 TRFGIQKMKESVLMLASF 2536
TRFGIQKM +SVLMLASF
Sbjct: 1319 TRFGIQKMDKSVLMLASF 1336
Score = 165 bits (417), Expect(2) = e-153
Identities = 121/308 (39%), Positives = 150/308 (48%), Gaps = 40/308 (12%)
Frame = +1
Query: 187 QPVELWTGKQLFSVLVRPRAQMRVYVNLTVTEKSYKQGK-----------ETLCPNEGFV 333
+PVELWTGKQLFSVL+RP A MRVYVNLTV EK+Y ET+CPN+GFV
Sbjct: 604 KPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFV 663
Query: 334 YIQNSELI*GQVGEATLV----LAGLEP-WV------------------LDWY*KQIND- 441
Y +NSELI GQ+G+ATL LA L W+ D K I++
Sbjct: 664 YFRNSELISGQLGKATLGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISEN 723
Query: 442 -----ALLQKYKNGTLIVQPGCDAAQTLESELTYLLNGVREKTGKVNHVMWLHFFDSYLY 606
+++Y G L ++PGCDAAQTLE+ +T +LN +RE G
Sbjct: 724 YEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAG---------------- 767
Query: 607 **MMAYNIFISLVKTGKICMGXXXXXXXXXXXXXXTLEEQPSDYVAVWIQRVPR*YQSDH 786
K CMG + P + Q
Sbjct: 768 ----------------KACMGSLPWRNSPLIMSQCGSKGSPINIS-----------QMVA 800
Query: 787 CLCWSAISWGFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGL 966
C+ ++ G A +GF DR+LPHFPR + P AKGFV NSF +GL ATE FFHT M G
Sbjct: 801 CVGQQSVG-GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHT-MGGR 858
Query: 967 EGLGDTAV 990
EGL DTAV
Sbjct: 859 EGLVDTAV 866
>gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis]
Length = 1179
Score = 406 bits (1044), Expect(4) = e-149
Identities = 242/493 (49%), Positives = 304/493 (61%), Gaps = 13/493 (2%)
Frame = +2
Query: 1097 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMDPSKMEGKDGSPLNFDRLYMK 1246
GYMSRRLIKALEDL + YDN QF YGDDGMDP+ MEGK+G+PLNF+RL++K
Sbjct: 652 GYMSRRLIKALEDLFVHYDNTVRNASACIIQFCYGDDGMDPAHMEGKNGAPLNFERLFLK 711
Query: 1247 AKATCPARGHSSLSPTEIKKLADDRLSELIMTPEGGFKEGEEAFNEGKEAFKKSLLDXXX 1426
AKATCPA G LSP ++ +L + RLS+ MTPEGG AFK SL
Sbjct: 712 AKATCPAGGTEKLSPEKVSELVESRLSKKDMTPEGGCSA----------AFKNSLKSFLD 761
Query: 1427 XXXXXXXXXLYKCITSLTNTRKGLQLDEEKMGSQSLEKVSANVAGITSQQLQVFLETCIS 1606
C ++ + + S + + + ++G T++QL+VFL+TCIS
Sbjct: 762 NYVKAFKRTWDPCESTEGHAKME--------NSATTKNIVLQLSGATARQLEVFLDTCIS 813
Query: 1607 RYYTKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKNI 1786
RY++K+ EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAK I
Sbjct: 814 RYHSKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKKI 873
Query: 1787 STPIITAKLENDRDVRSARRVKGCIEKTVLGEIAESMKIVLESRGAYILVKLDMIRCSQ- 1963
STPIITA LE D +V AR V+G IEK LG++A+S+K V+ SR A +++ LDM R
Sbjct: 874 STPIITAILECDNNVNFARIVRGRIEKISLGQVAKSIKTVMTSRVASVVITLDMERIQDA 933
Query: 1964 -LNISAISVQQXXXXXXXXXXXXXXXXXXXXXYVKVVDDRSLKILSPEEDRIKLHFALHS 2140
L+I A V+ +++V+D + L+IL E +R KL+ L
Sbjct: 934 LLSIDANVVRDSILQTPRIKLKKE--------HIRVLDFKKLEILPYESNRSKLYHHLQF 985
Query: 2141 LKSMLPEVVVMGVPTVERVIVS-EKQKKGKGTGEYEVFVEGTNLLAVMGIPGVKGEETTS 2317
L ML ++V G+ TVER ++S EK KK + +Y++ VEGT LL VMG GV G T +
Sbjct: 986 LAKMLQNILVKGIKTVERAVISSEKDKKTDISKKYKLLVEGTGLLGVMGTEGVDGRNTKT 1045
Query: 2318 NHIIEVQQTLGXXXXXXXXXXXXQHIMKEYKMSIDVRHMMLLADVMTSNGEVLGITRFGI 2497
NHIIEVQQTLG ++ MK + MSID RHMMLLADVMTS GEVLGITRFGI
Sbjct: 1046 NHIIEVQQTLGIEAARTCIIDEIEYTMKSHGMSIDTRHMMLLADVMTSRGEVLGITRFGI 1105
Query: 2498 QKMKESVLMLASF 2536
QKM +SVLMLASF
Sbjct: 1106 QKMDKSVLMLASF 1118
Score = 89.0 bits (219), Expect(4) = e-149
Identities = 65/184 (35%), Positives = 86/184 (46%)
Frame = +1
Query: 439 DALLQKYKNGTLIVQPGCDAAQTLESELTYLLNGVREKTGKVNHVMWLHFFDSYLY**MM 618
D ++ YK G L +PGCDAAQ+LE+ +T +LN +RE+
Sbjct: 508 DDKIKSYKEGNLPPEPGCDAAQSLEAVITGILNKIREE---------------------- 545
Query: 619 AYNIFISLVKTGKICMGXXXXXXXXXXXXXXTLEEQPSDYVAVWIQRVPR*YQSDHCLCW 798
TGK+CM + + S + I ++ C+
Sbjct: 546 ----------TGKLCM-----KALPWRNSPLIMSQCGSKGSLINISQMVA------CVGQ 584
Query: 799 SAISWGFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLG 978
++ G A +GF DR+LPHFPR P AKGFV +SF GL ATE FFHT M G EGL
Sbjct: 585 QSVG-GRRAPNGFIDRSLPHFPRKDKTPAAKGFVSHSFYDGLSATEFFFHT-MGGREGLV 642
Query: 979 DTAV 990
DTAV
Sbjct: 643 DTAV 646
Score = 87.0 bits (214), Expect(4) = e-149
Identities = 44/73 (60%), Positives = 56/73 (76%), Gaps = 7/73 (9%)
Frame = +1
Query: 187 QPVELWTGKQLFSVLVRPRAQMRVYVNLTVTEKSY-------KQGKETLCPNEGFVYIQN 345
+PVELWTGKQLFSVLVRP A +RV++NLTV EK+Y ++ ET+CP +GFV +N
Sbjct: 366 KPVELWTGKQLFSVLVRPNANVRVFLNLTVREKNYSNKLQENEREFETMCPADGFVCFRN 425
Query: 346 SELI*GQVGEATL 384
SELI GQ+G+ TL
Sbjct: 426 SELISGQLGKGTL 438
Score = 20.4 bits (41), Expect(4) = e-149
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 401 NHGFLIGIEN 430
NHGF IGI++
Sbjct: 476 NHGFSIGIDD 485
>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
vinifera]
Length = 1383
Score = 427 bits (1099), Expect(2) = e-143
Identities = 258/495 (52%), Positives = 318/495 (64%), Gaps = 15/495 (3%)
Frame = +2
Query: 1097 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMDPSKMEGKDGSPLNFDRLYMK 1246
GYMSRRL+KALEDLSIQYD QFLYGDDGMDP++MEGKDG PLNF+RL++K
Sbjct: 866 GYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGDDGMDPARMEGKDGFPLNFNRLFLK 925
Query: 1247 AKATCPARGHSSLSPTEIKKLADDRLSELIMTPEGGFKEGEEAFNEGKEAFKKSLLDXXX 1426
KATCPA ++SLS +I++ RL E + EG +AFK +L
Sbjct: 926 VKATCPAGENASLSALQIEETVK-RLKEHNTSAEGC-----------SDAFKTNL----- 968
Query: 1427 XXXXXXXXXLYKCITSLTNTRKGLQLDEEKMGSQSL---EKVSANVAGITSQQLQVFLET 1597
L +C NTR+ L L E +G ++L EK + N++GITS+QLQVFL+T
Sbjct: 969 ------SGFLEECKEKFKNTREALGLHGEHVGEENLDIQEKFAKNISGITSKQLQVFLDT 1022
Query: 1598 CISRYYTKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGA 1777
CISRY KR EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGA
Sbjct: 1023 CISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGA 1082
Query: 1778 KNISTPIITAKLENDRDVRSARRVKGCIEKTVLGEIAESMKIVLESRGAYILVKLDM--I 1951
K ISTPIITA LE + +V++AR VKG IE+T LG++A+S+KIVL SR A I V LDM I
Sbjct: 1083 KRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSRLALIAVALDMEGI 1142
Query: 1952 RCSQLNISAISVQQXXXXXXXXXXXXXXXXXXXXXYVKVVDDRSLKILSPEEDRIKLHFA 2131
+ SQL+I + V++ ++KV+D L++ P+ DR +HF
Sbjct: 1143 QASQLSIDSNIVRE--------SILRNRRIKLKQQHIKVLDAGKLEV-HPQGDRSTIHFE 1193
Query: 2132 LHSLKSMLPEVVVMGVPTVERVIVSEKQKKGKGTGEYEVFVEGTNLLAVMGIPGVKGEET 2311
LH+LK++LP VVV G+ TVER ++++ K +Y + VEGT L VMG GV G ET
Sbjct: 1194 LHALKNLLPTVVVKGIETVERAVINKDNKV-----KYNLLVEGTGLQTVMGTEGVIGRET 1248
Query: 2312 TSNHIIEVQQTLGXXXXXXXXXXXXQHIMKEYKMSIDVRHMMLLADVMTSNGEVLGITRF 2491
TSNHIIEVQQTLG Q+ M + MSID+RHMMLLAD+MT GEVLGITRF
Sbjct: 1249 TSNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMTFRGEVLGITRF 1308
Query: 2492 GIQKMKESVLMLASF 2536
GIQKM +SVLMLASF
Sbjct: 1309 GIQKMDKSVLMLASF 1323
Score = 110 bits (275), Expect(2) = e-143
Identities = 108/329 (32%), Positives = 146/329 (44%), Gaps = 61/329 (18%)
Frame = +1
Query: 187 QPVELWTGKQLFSVLVRPRAQMRVYVNLTVTEKSY--KQGKETLCPNEGFVYIQNSELI* 360
+PVELWTGKQLF+VL+RP A +RVY+NLTV EK+Y ++GKET+CP++GFVY +NSELI
Sbjct: 585 KPVELWTGKQLFNVLLRPHANVRVYLNLTVMEKTYNKRRGKETMCPSDGFVYFRNSELIS 644
Query: 361 GQVGEATLVLA---GLEPWVLDWY*KQINDALLQK-------------YKNGTLIVQPG- 489
GQ+G+ATL GL +L Y A + + + G VQPG
Sbjct: 645 GQLGKATLGNGNKDGLFSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGG 704
Query: 490 ----------------------------------CDAAQTLESELTYLLNGVREKTGKVN 567
C+AAQTLE+E+T +LN +RE T V
Sbjct: 705 LLNDQKSKRIEEGYENCHELIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRETTANV- 763
Query: 568 HVMWLHFFDSYLY**MMA--------YNIFISLVKTGKICMGXXXXXXXXXXXXXXTLEE 723
+ LH+ +S L +M+ NI + G+ +G
Sbjct: 764 CMEELHWRNSPL---IMSQCGSKGSPINISQMIACVGQQSVGG---------------RR 805
Query: 724 QPSDYVAVWIQRVPR*YQSDHCLCWSAISWGFPASSGFTDRNLPHFPRNSTAPDAKGFVE 903
P ++ + PR ++ + GF ASS +T
Sbjct: 806 APDGFIDRTLPHFPRKSKTPD-------AKGFVASSFYT--------------------- 837
Query: 904 NSFCTGLIATELFFHTIMAGLEGLGDTAV 990
GL ATE FFHT M G EGL DTAV
Sbjct: 838 -----GLTATEFFFHT-MGGREGLVDTAV 860
>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
polymerase III largest subunit, putative [Ricinus
communis]
Length = 1383
Score = 394 bits (1012), Expect(2) = e-141
Identities = 229/496 (46%), Positives = 305/496 (61%), Gaps = 16/496 (3%)
Frame = +2
Query: 1097 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMDPSKMEGKDGSPLNFDRLYMK 1246
GYMSRRLIK LEDLSIQYDN QFLYGDDG+DP+ MEGK G PLN DRL+ K
Sbjct: 847 GYMSRRLIKGLEDLSIQYDNTVRNASGCIVQFLYGDDGLDPASMEGKGGVPLNLDRLFSK 906
Query: 1247 AKATCPARGHSSLSPTEIKKLADDRLSELIMTPEGGFKEGEEAFNEGKEAFKKSLLDXXX 1426
KATCP R LSP +I + ++ L + M G E AFKKSL
Sbjct: 907 VKATCPVREEDYLSPLDISDVVENLLLKHDMALGGICSE----------AFKKSLTSFLG 956
Query: 1427 XXXXXXXXXLYKCITSLTNTRKGLQLDEEKMGSQSLEKVSANVAGITSQQLQVFLETCIS 1606
+ T + +Q + S+ +E+++ + G++ +Q++VF++TCI+
Sbjct: 957 SHAKRLESMMKLADGVEDPTSENIQTGGIRGNSKIIERLAHKIFGVSERQIEVFVKTCIN 1016
Query: 1607 RYYTKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKNI 1786
RY KR EPGTQMTLKTFHFAGVASMN+T GVPRIKEIINGAK I
Sbjct: 1017 RYLWKRVEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKKI 1076
Query: 1787 STPIITAKLENDRDVRSARRVKGCIEKTVLGEIAESMKIVLESRGAYILVKLDM--IRCS 1960
STPIITA+LE + +V +AR KG I+KTVLG++A+S+KIV+ SR A +++ LDM I+ +
Sbjct: 1077 STPIITAELEQNTNVTAARIAKGRIQKTVLGQVAKSIKIVMTSRSASVVITLDMKTIQNA 1136
Query: 1961 QLNISAISVQQXXXXXXXXXXXXXXXXXXXXXYVKVVDDRSLKILSPEEDRIKLHFALHS 2140
QL++ A V++ ++KV+D R L+++ P DR ++HF LH+
Sbjct: 1137 QLSLDANIVKE--------AILRTPRIKLKPQHIKVLDTRKLEVI-PLGDRERVHFELHN 1187
Query: 2141 LKSMLPEVVVMGVPTVERVIVSEKQKKGKGTGE----YEVFVEGTNLLAVMGIPGVKGEE 2308
LK++LP ++V G+ TVER ++++K+ GK + Y + VEG L VMG GV G +
Sbjct: 1188 LKNLLPSIIVQGIKTVERAVIAQKKHDGKANDQELPTYNMLVEGMGLDLVMGTEGVDGCK 1247
Query: 2309 TTSNHIIEVQQTLGXXXXXXXXXXXXQHIMKEYKMSIDVRHMMLLADVMTSNGEVLGITR 2488
TTSNH++EVQ+ LG M+ + MSID+RHMMLL D+MT GEVLGITR
Sbjct: 1248 TTSNHVMEVQKFLGIEAARKCIIDEINQTMEHHGMSIDIRHMMLLGDLMTFKGEVLGITR 1307
Query: 2489 FGIQKMKESVLMLASF 2536
FGIQKM +SVLMLASF
Sbjct: 1308 FGIQKMDKSVLMLASF 1323
Score = 137 bits (345), Expect(2) = e-141
Identities = 113/328 (34%), Positives = 151/328 (46%), Gaps = 60/328 (18%)
Frame = +1
Query: 187 QPVELWTGKQLFSVLVRPRAQMRVYVNLTVTEKSY-------KQGKETLCPNEGFVYIQN 345
+P+ELWTGKQLFSVL+RP A +RVYVNL V EK Y K+ KET+CPN+GFVYI+N
Sbjct: 559 KPIELWTGKQLFSVLLRPNANVRVYVNLIVREKIYSKPKKGDKREKETMCPNDGFVYIRN 618
Query: 346 SELI*GQVGEATL-----------VLAGLEP------------------WV--------- 411
SELI GQ+G+ATL +L P W+
Sbjct: 619 SELISGQLGKATLGNGNKDGLYSILLRDYNPHAAATCMNRLAKLRQVARWIGNHGFSIGI 678
Query: 412 ---------LDWY*KQINDA------LLQKYKNGTLIVQPGCDAAQTLESELTYLLNGVR 546
+D K I++ L+++Y G L+++PGCDA QTLESE+T LN +R
Sbjct: 679 DDVQPGKKLIDGKGKTISNGYQQCDKLIEQYNEGKLLLKPGCDATQTLESEITEKLNKLR 738
Query: 547 EKTGKVNHVMWLHFFDSYLY**MMAYNIFISLVKTGKICMGXXXXXXXXXXXXXXTLEEQ 726
E+ G V + LH+ +S L + + C+G
Sbjct: 739 EEAGDV-CMKELHWRNSPLIMSQCGSKGSVINISQMVACVGQQSVGG----------RRA 787
Query: 727 PSDYVAVWIQRVPR*YQSDHCLCWSAISWGFPASSGFTDRNLPHFPRNSTAPDAKGFVEN 906
P ++ + PR ++ PA+ G FV N
Sbjct: 788 PDGFIDRSLPHFPRKSKT-------------PAAKG--------------------FVAN 814
Query: 907 SFCTGLIATELFFHTIMAGLEGLGDTAV 990
SF +GL+ATE FFHT MAG EGL DTAV
Sbjct: 815 SFYSGLMATEFFFHT-MAGREGLVDTAV 841
>ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
gi|300146624|gb|EFJ13293.1| hypothetical protein
SELMODRAFT_446351 [Selaginella moellendorffii]
Length = 1393
Score = 418 bits (1075), Expect(2) = e-141
Identities = 241/492 (48%), Positives = 311/492 (63%), Gaps = 12/492 (2%)
Frame = +2
Query: 1097 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMDPSKMEGKDGSPLNFDRLYMK 1246
GYMSRRL+KALEDLS QYD Q +YGDD MDP MEG++G+PLN DR+ MK
Sbjct: 878 GYMSRRLMKALEDLSCQYDGTVRNSSGVIVQLIYGDDSMDPVSMEGQNGTPLNLDRVLMK 937
Query: 1247 AKATCPARGHSSLSPTEIKKLADDRLSELIMTPEGGFKEGEEAFNEGKEAFKKSLLDXXX 1426
AKATCP +L P+E+ K+ + + S+ +G E ++ +K
Sbjct: 938 AKATCPRGTTPALPPSELWKIVESKFSQ----------DGSECSTAFLDSLRK------- 980
Query: 1427 XXXXXXXXXLYKCITSLTNTRKGLQLDEEKMGSQSLEKVSANVAGITSQQLQVFLETCIS 1606
L K ++++TRK L L + G+ E V+ANV+G+TS+QL+VFL TCI
Sbjct: 981 --------FLRKEFDTISSTRKRLSLPLDDFGNVDDENVAANVSGLTSRQLEVFLNTCIG 1032
Query: 1607 RYYTKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKNI 1786
RY+ K+ EPGTQMTLKTFHFAGVASMN+TLGVPRIKEIIN +K I
Sbjct: 1033 RYHRKKLDPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKKI 1092
Query: 1787 STPIITAKLENDRDVRSARRVKGCIEKTVLGEIAESMKIVLESRGAYILVKLDM--IRCS 1960
STPIITAKL ++ DV++AR VKG IEKT LG++A+S+KIVL A++ +KLDM I
Sbjct: 1093 STPIITAKLVSENDVKAARIVKGRIEKTALGDVAKSIKIVLRPGQAFVSIKLDMDRIYSL 1152
Query: 1961 QLNISAISVQQXXXXXXXXXXXXXXXXXXXXXYVKVVDDRSLKILSPEEDRIKLHFALHS 2140
QL+I A +V + +VKV DDRS+ + +PE DR K+ FALHS
Sbjct: 1153 QLDIRAETVAE-----AVLKFPKIKSMKLKEQHVKVNDDRSISLTTPESDRKKMLFALHS 1207
Query: 2141 LKSMLPEVVVMGVPTVERVIVSEKQKKGKGTGEYEVFVEGTNLLAVMGIPGVKGEETTSN 2320
L++MLP+V+V G+PTVER ++++++ G+Y + VEGTNL AVMG GV G ETTSN
Sbjct: 1208 LQNMLPKVIVKGIPTVERAVINQEK------GKYNLLVEGTNLKAVMGTEGVDGRETTSN 1261
Query: 2321 HIIEVQQTLGXXXXXXXXXXXXQHIMKEYKMSIDVRHMMLLADVMTSNGEVLGITRFGIQ 2500
HI E + LG Q+ M + MSID RHMMLLADVMT GE+LGITRFG+
Sbjct: 1262 HIFETVEVLGIEAARNGIIKEIQYTMGSHGMSIDQRHMMLLADVMTYRGEILGITRFGMA 1321
Query: 2501 KMKESVLMLASF 2536
KMK+SVLMLASF
Sbjct: 1322 KMKDSVLMLASF 1333
Score = 112 bits (279), Expect(2) = e-141
Identities = 100/319 (31%), Positives = 139/319 (43%), Gaps = 51/319 (15%)
Frame = +1
Query: 187 QPVELWTGKQLFSVLVRPRAQMRVYVNLTVTEKSYKQGKETLCPNEGFVYIQNSELI*GQ 366
+PVELWTGKQLF VL+RP A+++V++N V EK++K+G ET+CP +G+V+ +NSELI GQ
Sbjct: 599 KPVELWTGKQLFGVLIRPSARIKVFLNFVVCEKNHKKGTETMCPKDGYVFFKNSELICGQ 658
Query: 367 VGEATL---VLAGLEPWVLDWY*KQINDALLQK-------------YKNGTLIVQPG--- 489
+G+ TL GL +L Y +Q + + + + G VQPG
Sbjct: 659 LGKGTLGNGSKDGLFTVLLRDYGEQAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGSRL 718
Query: 490 --------------------------------CDAAQTLESELTYLLNGVREKTGKVNHV 573
CDAAQTLESE+T LN +RE G+V V
Sbjct: 719 TVEKEKRIAEGYRACDKHISLFNKGQLTLQPGCDAAQTLESEITGELNKIREAAGQV-CV 777
Query: 574 MWLHFFDSYLY**MMAYNIFISLVKTGKICMGXXXXXXXXXXXXXXTLEEQPSDYVAVWI 753
LH+ +S L + + C+G P+ ++ +
Sbjct: 778 NELHWRNSPLIMSQCGSKGSVINISQMIACVGQQSVSG----------HRAPNGFIERSL 827
Query: 754 QRVPR*YQSDHCLCWSAISWGFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIAT 933
PR ++ P + GF V NSF +GL AT
Sbjct: 828 PHFPRNDKT-------------PQAKGF--------------------VANSFYSGLTAT 854
Query: 934 ELFFHTIMAGLEGLGDTAV 990
E FHT M G EGL DTAV
Sbjct: 855 EFIFHT-MGGREGLVDTAV 872
>ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [Amborella trichopoda]
gi|548832896|gb|ERM95665.1| hypothetical protein
AMTR_s00023p00196820 [Amborella trichopoda]
Length = 1383
Score = 411 bits (1056), Expect(3) = e-139
Identities = 247/493 (50%), Positives = 306/493 (62%), Gaps = 13/493 (2%)
Frame = +2
Query: 1097 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMDPSKMEGKDGSPLNFDRLYMK 1246
GY+SRRLIK+LEDLS YD+ QF YGDDGMDP+KMEGK G PLN DRL+MK
Sbjct: 860 GYLSRRLIKSLEDLSTHYDDTVRNSSGTIIQFSYGDDGMDPAKMEGKSGVPLNLDRLFMK 919
Query: 1247 AKATCPARGHSSLSPTEIKKLADDRLSELIMTPEGGFKEGEEAFNEGKEAFKKSLLDXXX 1426
KATCPA +SLSP+EI + +DRLS+ MTPE G AF E F K +D
Sbjct: 920 IKATCPASVSASLSPSEISTIVNDRLSKHDMTPERGCSM---AFKEELSNFIKKRMD--- 973
Query: 1427 XXXXXXXXXLYKCITSLTNTRKGLQLDEEKMGSQS---LEKVSANVAGITSQQLQVFLET 1597
++ TR L LDE+ + + LE V+AN++GI+ QQL+VFLET
Sbjct: 974 ---------------AIKKTRNMLGLDEDCVDKEKFSGLEHVAANISGISRQQLRVFLET 1018
Query: 1598 CISRYYTKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGA 1777
CISRY+ KR EPGTQMTLKTFHFAGVASMN+TLGVPRIKEI+ +
Sbjct: 1019 CISRYHLKRIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEILGAS 1078
Query: 1778 KNISTPIITAKLENDRDVRSARRVKGCIEKTVLGEIAESMKIVLESRGAYILVKLDMIRC 1957
K ISTPIITA L D D +SAR VKG IEKT+LGE+A+++KI + A I + LDM R
Sbjct: 1079 KKISTPIITATLVCDNDEKSARIVKGRIEKTLLGEVAKTVKISVTPTQASINITLDMKRI 1138
Query: 1958 SQLNISAISVQQXXXXXXXXXXXXXXXXXXXXXYVKVVDDRSLKILSPEEDRIKLHFALH 2137
L + AI + + D+ LKIL PE R ++ ++LH
Sbjct: 1139 EALQM-AIDAKTVADSISENLKAKVSRTKLKVKPTFTLPDK-LKILLPEIGRKEVLYSLH 1196
Query: 2138 SLKSMLPEVVVMGVPTVERVIVSEKQKKGKGTGEYEVFVEGTNLLAVMGIPGVKGEETTS 2317
L+S+LP+++V G+PTVER +++ + G+ + VEGTNLLAVMG PGV G TTS
Sbjct: 1197 LLQSLLPKIIVKGIPTVERAVINNVK------GKLNLLVEGTNLLAVMGTPGVDGRNTTS 1250
Query: 2318 NHIIEVQQTLGXXXXXXXXXXXXQHIMKEYKMSIDVRHMMLLADVMTSNGEVLGITRFGI 2497
NHI+EV+ TLG Q+ MK + MSID+RHMMLLAD+MT G VLGI RFGI
Sbjct: 1251 NHIVEVEGTLGIEAARKSIIDEIQYTMKSHGMSIDLRHMMLLADLMTFRGLVLGIQRFGI 1310
Query: 2498 QKMKESVLMLASF 2536
KMKESVLMLASF
Sbjct: 1311 TKMKESVLMLASF 1323
Score = 77.4 bits (189), Expect(3) = e-139
Identities = 40/59 (67%), Positives = 42/59 (71%)
Frame = +1
Query: 814 GFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 990
G A +GF DR+LPHFPRN P AKGFV NSF TGL A E FFHT M G EGL DTAV
Sbjct: 797 GRRAPNGFIDRSLPHFPRNDKTPAAKGFVANSFYTGLTAAEFFFHT-MGGREGLVDTAV 854
Score = 59.3 bits (142), Expect(3) = e-139
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = +2
Query: 710 LHWRNSPLIMSQCGSKGSPDNISQIIAC 793
LHWRNSPLIMSQCGSKGSP NISQ+IAC
Sbjct: 762 LHWRNSPLIMSQCGSKGSPINISQMIAC 789
Score = 103 bits (257), Expect = 4e-19
Identities = 47/66 (71%), Positives = 59/66 (89%)
Frame = +1
Query: 187 QPVELWTGKQLFSVLVRPRAQMRVYVNLTVTEKSYKQGKETLCPNEGFVYIQNSELI*GQ 366
+PVELWTGKQLFSVL+RP A M+VYVNL++ EK+Y +G ET+C N+GFVYI+NSELI GQ
Sbjct: 581 KPVELWTGKQLFSVLIRPHAHMKVYVNLSLMEKNYSKGGETMCANDGFVYIRNSELISGQ 640
Query: 367 VGEATL 384
+G+ATL
Sbjct: 641 LGKATL 646
>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Setaria
italica]
Length = 1397
Score = 437 bits (1123), Expect(2) = e-139
Identities = 255/495 (51%), Positives = 318/495 (64%), Gaps = 15/495 (3%)
Frame = +2
Query: 1097 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMDPSKMEGKDGSPLNFDRLYMK 1246
GYMSRRL+K LEDLS+ YD QFLYGDDGMDP+KMEGKDG+PLN D+L+MK
Sbjct: 873 GYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMDPAKMEGKDGTPLNLDQLFMK 932
Query: 1247 AKATCPARGHSSLSPTEIKKLADDRLSELIMTPEGGFKEGEEAFNEGKEAFKKSLLDXXX 1426
ATCP RG +LSP +IK++ +D+L++ + +GG E E KE KK L +
Sbjct: 933 VTATCPHRGLDTLSPDDIKQMLEDKLTQHKTSSDGGCSE------EFKECLKKFLEERIQ 986
Query: 1427 XXXXXXXXXLYKCITSLTNTRKGLQLDEEKMGSQSL---EKVSANVAGITSQQLQVFLET 1597
L KC TRK L LDE+ +G E ++AN++GI+++QLQVFL+T
Sbjct: 987 ---------LLKC------TRKALHLDEKHVGKNDSCIEEIIAANISGISAKQLQVFLDT 1031
Query: 1598 CISRYYTKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGA 1777
C SRY +K EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN A
Sbjct: 1032 CFSRYNSKAIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAA 1091
Query: 1778 KNISTPIITAKLENDRDVRSARRVKGCIEKTVLGEIAESMKIVLESRGAYILVKLDM--I 1951
K ISTPIIT +L + +DV SAR VKG +EK VLGE+A ++KIVL+S ++VKLDM I
Sbjct: 1092 KKISTPIITTELLSRKDVLSARIVKGAMEKAVLGEVASAIKIVLKSSQPNLVVKLDMQLI 1151
Query: 1952 RCSQLNISAISVQQXXXXXXXXXXXXXXXXXXXXXYVKVVDDRSLKILSPEEDRIKLHFA 2131
+ ISA SVQ +V+V+D L+I D+ KL
Sbjct: 1152 EALHMGISADSVQ--------LSILNHPKIKLKSEHVRVIDRAKLRIYPAGTDKSKLQLE 1203
Query: 2132 LHSLKSMLPEVVVMGVPTVERVIVSEKQKKGKGTGEYEVFVEGTNLLAVMGIPGVKGEET 2311
LH+LK+MLP+V+V G+PTVERV++ E++K+GK +Y + VEGTNLLAVMG PGV T
Sbjct: 1204 LHNLKAMLPKVIVKGIPTVERVVIDERKKEGK-LEKYNLLVEGTNLLAVMGTPGVDARNT 1262
Query: 2312 TSNHIIEVQQTLGXXXXXXXXXXXXQHIMKEYKMSIDVRHMMLLADVMTSNGEVLGITRF 2491
SNHI+E+ TLG Q+ MK + M+IDVRHMMLLAD+MT GEVLGITR+
Sbjct: 1263 KSNHIMEMNSTLGIEAARRSIIDEIQYTMKSHGMNIDVRHMMLLADLMTYKGEVLGITRY 1322
Query: 2492 GIQKMKESVLMLASF 2536
GI KMK SVLMLASF
Sbjct: 1323 GIAKMKTSVLMLASF 1337
Score = 87.4 bits (215), Expect(2) = e-139
Identities = 66/188 (35%), Positives = 81/188 (43%)
Frame = +1
Query: 427 KQINDALLQKYKNGTLIVQPGCDAAQTLESELTYLLNGVREKTGKVNHVMWLHFFDSYLY 606
KQ +D L+ + G L + PGC+AAQTLE ++T +LN +R
Sbjct: 726 KQCHD-LISLFAKGALALHPGCNAAQTLEHKITGVLNEIR-------------------- 764
Query: 607 **MMAYNIFISLVKTGKICMGXXXXXXXXXXXXXXTLEEQPSDYVAVWIQRVPR*YQSDH 786
G +CM + P + Q
Sbjct: 765 ------------TAAGNVCMDTLHWRNSPLIMSQCGSKGSPINIS-----------QMVA 801
Query: 787 CLCWSAISWGFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGL 966
C+ ++ G A GF DR LPHFP NS P AKGFV NSF TGL ATE FFHT M G
Sbjct: 802 CVGQQSVG-GRRAPDGFIDRTLPHFPINSKTPAAKGFVANSFYTGLTATEFFFHT-MGGR 859
Query: 967 EGLGDTAV 990
EGL DTAV
Sbjct: 860 EGLVDTAV 867
Score = 90.5 bits (223), Expect = 3e-15
Identities = 44/82 (53%), Positives = 58/82 (70%), Gaps = 16/82 (19%)
Frame = +1
Query: 187 QPVELWTGKQLFSVLVRPRAQMRVYVNLTVTEKSYKQ----------------GKETLCP 318
+P+ELWTGKQLFSVLVRP A+ +V++NL V EK Y + G+ET+CP
Sbjct: 578 KPIELWTGKQLFSVLVRPNARTKVFLNLAVKEKIYSKKKEKKEGEEEEKETMCGRETMCP 637
Query: 319 NEGFVYIQNSELI*GQVGEATL 384
N+G+VY +NSEL+ GQVG+ATL
Sbjct: 638 NDGYVYFRNSELLSGQVGKATL 659
>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
Japonica Group] gi|38347455|emb|CAD41360.2|
OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
Japonica Group] gi|116310339|emb|CAH67354.1|
OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein
OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 427 bits (1099), Expect(2) = e-138
Identities = 253/495 (51%), Positives = 317/495 (64%), Gaps = 15/495 (3%)
Frame = +2
Query: 1097 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMDPSKMEGKDGSPLNFDRLYMK 1246
GYMSRRL+K LEDLS+ YD QFLYGDDGMDP+KMEGKDG PLN D+L+MK
Sbjct: 860 GYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMDPAKMEGKDGKPLNLDQLFMK 919
Query: 1247 AKATCPARGHSSLSPTEIKKLADDRLSELIMTPEGGFKEGEEAFNEGKEAFKKSLLDXXX 1426
ATCP RG ++LSP EI ++ +D+LSE + + G E FK+ L
Sbjct: 920 VMATCPQRGQNTLSPGEILQILNDKLSEHDASSDDGCSE----------KFKQLLT---- 965
Query: 1427 XXXXXXXXXLYKCITSLTNTRKGLQLDEEKMG---SQSLEKVSANVAGITSQQLQVFLET 1597
L I L +TR+ L LDE+ +G S E ++AN++GI+ +QLQVFL+T
Sbjct: 966 -------YFLEDRIKLLKSTRRALLLDEDHVGERHSSFEESIAANISGISVKQLQVFLDT 1018
Query: 1598 CISRYYTKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGA 1777
C+SRY+ K+ EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN A
Sbjct: 1019 CLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAA 1078
Query: 1778 KNISTPIITAKLENDRDVRSARRVKGCIEKTVLGEIAESMKIVLESRGAYILVKLDMIRC 1957
K ISTPIITA+L +++DV SAR VKG +EK VLGE+AE++KIVL+S ++VKLDM R
Sbjct: 1079 KKISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAEAIKIVLKSSQPNLVVKLDMQRI 1138
Query: 1958 SQLN--ISAISVQQXXXXXXXXXXXXXXXXXXXXXYVKVVDDRSLKILSPEEDRIKLHFA 2131
L+ ISA SVQ +V+V+D L+I D+ KL +
Sbjct: 1139 EALHMGISADSVQ--------LSILNHPKIKLKSEHVRVIDKSKLRIYPAGIDKSKLLYE 1190
Query: 2132 LHSLKSMLPEVVVMGVPTVERVIVSEKQKKGKGTGEYEVFVEGTNLLAVMGIPGVKGEET 2311
LH LKSMLP+V+V G+PTVER ++SE + + Y++ VEGTNLLAVMG PGV +T
Sbjct: 1191 LHHLKSMLPKVIVKGIPTVERAVISETGE--ENDKRYKLLVEGTNLLAVMGTPGVDAMKT 1248
Query: 2312 TSNHIIEVQQTLGXXXXXXXXXXXXQHIMKEYKMSIDVRHMMLLADVMTSNGEVLGITRF 2491
SNHI+EV +TLG Q+ MK + M+ID RHMMLLAD+MT GE+LGITR+
Sbjct: 1249 KSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGITRY 1308
Query: 2492 GIQKMKESVLMLASF 2536
GI KMK SVLMLASF
Sbjct: 1309 GIAKMKSSVLMLASF 1323
Score = 95.1 bits (235), Expect(2) = e-138
Identities = 67/182 (36%), Positives = 81/182 (44%)
Frame = +1
Query: 445 LLQKYKNGTLIVQPGCDAAQTLESELTYLLNGVREKTGKVNHVMWLHFFDSYLY**MMAY 624
L+ Y G L +QPGC+AAQTLE +T +LN +RE+ G
Sbjct: 718 LIASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAG---------------------- 755
Query: 625 NIFISLVKTGKICMGXXXXXXXXXXXXXXTLEEQPSDYVAVWIQRVPR*YQSDHCLCWSA 804
K+CM + P + Q C+ +
Sbjct: 756 ----------KVCMNTLHWRNSPLIMSQCGSKGSPINIS-----------QMVACVGQQS 794
Query: 805 ISWGFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDT 984
+ G A +GF DR LPHFP NS P AKGFV NSF TGL ATE FFHT M G EGL DT
Sbjct: 795 VG-GRRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGLTATEFFFHT-MGGREGLVDT 852
Query: 985 AV 990
AV
Sbjct: 853 AV 854
Score = 93.2 bits (230), Expect = 5e-16
Identities = 46/72 (63%), Positives = 56/72 (77%), Gaps = 6/72 (8%)
Frame = +1
Query: 187 QPVELWTGKQLFSVLVRPRAQMRVYVNLTVTEKSYKQGK------ETLCPNEGFVYIQNS 348
+P+ELWTGKQLFSVLVRP A +V++NLTV EK YK K E +CPN+GFVY +NS
Sbjct: 575 KPIELWTGKQLFSVLVRPNACTKVFLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRNS 634
Query: 349 ELI*GQVGEATL 384
EL+ GQVG+ATL
Sbjct: 635 ELLSGQVGKATL 646
>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 427 bits (1099), Expect(2) = e-138
Identities = 253/495 (51%), Positives = 317/495 (64%), Gaps = 15/495 (3%)
Frame = +2
Query: 1097 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMDPSKMEGKDGSPLNFDRLYMK 1246
GYMSRRL+K LEDLS+ YD QFLYGDDGMDP+KMEGKDG PLN D+L+MK
Sbjct: 798 GYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMDPAKMEGKDGKPLNLDQLFMK 857
Query: 1247 AKATCPARGHSSLSPTEIKKLADDRLSELIMTPEGGFKEGEEAFNEGKEAFKKSLLDXXX 1426
ATCP RG ++LSP EI ++ +D+LSE + + G E FK+ L
Sbjct: 858 VMATCPQRGQNTLSPGEILQILNDKLSEHDASSDDGCSE----------KFKQLLT---- 903
Query: 1427 XXXXXXXXXLYKCITSLTNTRKGLQLDEEKMG---SQSLEKVSANVAGITSQQLQVFLET 1597
L I L +TR+ L LDE+ +G S E ++AN++GI+ +QLQVFL+T
Sbjct: 904 -------YFLEDRIKLLKSTRRALLLDEDHVGERHSSFEESIAANISGISVKQLQVFLDT 956
Query: 1598 CISRYYTKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGA 1777
C+SRY+ K+ EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN A
Sbjct: 957 CLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAA 1016
Query: 1778 KNISTPIITAKLENDRDVRSARRVKGCIEKTVLGEIAESMKIVLESRGAYILVKLDMIRC 1957
K ISTPIITA+L +++DV SAR VKG +EK VLGE+AE++KIVL+S ++VKLDM R
Sbjct: 1017 KKISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAEAIKIVLKSSQPNLVVKLDMQRI 1076
Query: 1958 SQLN--ISAISVQQXXXXXXXXXXXXXXXXXXXXXYVKVVDDRSLKILSPEEDRIKLHFA 2131
L+ ISA SVQ +V+V+D L+I D+ KL +
Sbjct: 1077 EALHMGISADSVQ--------LSILNHPKIKLKSEHVRVIDKSKLRIYPAGIDKSKLLYE 1128
Query: 2132 LHSLKSMLPEVVVMGVPTVERVIVSEKQKKGKGTGEYEVFVEGTNLLAVMGIPGVKGEET 2311
LH LKSMLP+V+V G+PTVER ++SE + + Y++ VEGTNLLAVMG PGV +T
Sbjct: 1129 LHHLKSMLPKVIVKGIPTVERAVISETGE--ENDKRYKLLVEGTNLLAVMGTPGVDAMKT 1186
Query: 2312 TSNHIIEVQQTLGXXXXXXXXXXXXQHIMKEYKMSIDVRHMMLLADVMTSNGEVLGITRF 2491
SNHI+EV +TLG Q+ MK + M+ID RHMMLLAD+MT GE+LGITR+
Sbjct: 1187 KSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGITRY 1246
Query: 2492 GIQKMKESVLMLASF 2536
GI KMK SVLMLASF
Sbjct: 1247 GIAKMKSSVLMLASF 1261
Score = 95.1 bits (235), Expect(2) = e-138
Identities = 67/182 (36%), Positives = 81/182 (44%)
Frame = +1
Query: 445 LLQKYKNGTLIVQPGCDAAQTLESELTYLLNGVREKTGKVNHVMWLHFFDSYLY**MMAY 624
L+ Y G L +QPGC+AAQTLE +T +LN +RE+ G
Sbjct: 656 LIASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAG---------------------- 693
Query: 625 NIFISLVKTGKICMGXXXXXXXXXXXXXXTLEEQPSDYVAVWIQRVPR*YQSDHCLCWSA 804
K+CM + P + Q C+ +
Sbjct: 694 ----------KVCMNTLHWRNSPLIMSQCGSKGSPINIS-----------QMVACVGQQS 732
Query: 805 ISWGFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDT 984
+ G A +GF DR LPHFP NS P AKGFV NSF TGL ATE FFHT M G EGL DT
Sbjct: 733 VG-GRRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGLTATEFFFHT-MGGREGLVDT 790
Query: 985 AV 990
AV
Sbjct: 791 AV 792
Score = 92.8 bits (229), Expect = 7e-16
Identities = 46/71 (64%), Positives = 55/71 (77%), Gaps = 6/71 (8%)
Frame = +1
Query: 190 PVELWTGKQLFSVLVRPRAQMRVYVNLTVTEKSYKQGK------ETLCPNEGFVYIQNSE 351
P+ELWTGKQLFSVLVRP A +V++NLTV EK YK K E +CPN+GFVY +NSE
Sbjct: 514 PIELWTGKQLFSVLVRPNACTKVFLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRNSE 573
Query: 352 LI*GQVGEATL 384
L+ GQVG+ATL
Sbjct: 574 LLSGQVGKATL 584
>gb|EMT01541.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
Length = 1117
Score = 407 bits (1045), Expect(2) = e-137
Identities = 242/499 (48%), Positives = 304/499 (60%), Gaps = 19/499 (3%)
Frame = +2
Query: 1097 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMDPSKMEGKDGSPLNFDRLYMK 1246
GYMSRRL+K LEDLS+ YD QF+YGDDGMDP KMEGK G+PLN D+L+MK
Sbjct: 585 GYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFVYGDDGMDPVKMEGKGGNPLNLDQLFMK 644
Query: 1247 AKATCPARGHSSLSPTEIKKLADDRLSELIMTPEGGFKEGEEAFNEGKEAFKKSLLDXXX 1426
ATCP RGH +LSP I ++ +D+LSE P G + FK+ L
Sbjct: 645 VMATCPQRGHETLSPEAISQMLNDKLSE--QDPSAG---------GCSDRFKELLTKFVG 693
Query: 1427 XXXXXXXXXLYKCITSLTNTRKGLQLDEEKMGSQ--SLEK-VSANVAGITSQQLQVFLET 1597
I L NTR+ L LDE+ +G + S+E+ V+AN++GI ++QLQVFL+T
Sbjct: 694 NR-----------IKMLRNTRRALHLDEDHVGRKDSSIEECVAANISGIAAKQLQVFLDT 742
Query: 1598 CISRYYTKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMN------VTLGVPRIK 1759
C+SRY++K EPGTQMTLKTFHFAGVASM+ VTLGVPRIK
Sbjct: 743 CLSRYHSKIIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMSILSVLYVTLGVPRIK 802
Query: 1760 EIINGAKNISTPIITAKLENDRDVRSARRVKGCIEKTVLGEIAESMKIVLESRGAYILVK 1939
EIIN AK ISTPIITA+L + +D +VK CIEK VLGE+A ++KIVL+S ++VK
Sbjct: 803 EIINAAKKISTPIITAELLSGQDESFGVKVKRCIEKVVLGEVAAAIKIVLKSSQPNLVVK 862
Query: 1940 LDMIRCSQLNISAISVQQXXXXXXXXXXXXXXXXXXXXXYVKVVDDRSLKILSPEEDRIK 2119
LDM R I+ +V+V+D+ L+I DR K
Sbjct: 863 LDMQRIEAQGYEGINADSVQLSIINYPKLKLKSQ-----HVRVIDEAKLRIYPDGTDRSK 917
Query: 2120 LHFALHSLKSMLPEVVVMGVPTVERVIVSEKQKKGKGTGEYEVFVEGTNLLAVMGIPGVK 2299
L F LH+LKSMLP+V+V G+PTVER +V+ + + K Y + VEGTNLLAV+G PGV
Sbjct: 918 LQFELHNLKSMLPKVIVKGIPTVERAVVNPVKGRDKTIERYNLLVEGTNLLAVLGAPGVD 977
Query: 2300 GEETTSNHIIEVQQTLGXXXXXXXXXXXXQHIMKEYKMSIDVRHMMLLADVMTSNGEVLG 2479
+T SNHI+EV QTLG Q+ + M ID+RHMMLLAD+MT GEVLG
Sbjct: 978 AMKTKSNHIMEVNQTLGIEAARRSIIDEIQYTFESNNMIIDLRHMMLLADLMTYKGEVLG 1037
Query: 2480 ITRFGIQKMKESVLMLASF 2536
ITR+GI KMK SVLMLASF
Sbjct: 1038 ITRYGIAKMKSSVLMLASF 1056
Score = 110 bits (275), Expect(2) = e-137
Identities = 104/316 (32%), Positives = 139/316 (43%), Gaps = 48/316 (15%)
Frame = +1
Query: 187 QPVELWTGKQLFSVLVRPRAQMRVYVN-------------LTVTEKSYKQGKETLCPNEG 327
+P+ELWTGKQLFSVLVRP A +VY+N LTV +K+ + + +CPN+G
Sbjct: 310 KPIELWTGKQLFSVLVRPNAFTKVYLNLGVREKICTKKCALTVEDKTSEAVHDAMCPNDG 369
Query: 328 FVYIQNSELI*GQVGEATLVLA-------------------GLEPWVLDWY-*KQIND-- 441
FVY +NSEL+ GQVG+ TL L G V D + +N+
Sbjct: 370 FVYFRNSELLSGQVGKKTLDLKANQNLIDVLSSSARFIGNHGFSIGVDDVQPGESLNEKK 429
Query: 442 ------------ALLQKYKNGTLIVQPGCDAAQTLESELTYLLNGVREKTGKVNHVM-WL 582
L+ +Y G L QPGC AQTLE+ ++ +LN +R+ G +H M L
Sbjct: 430 GKTIGEGYQECHELIAQYSKGALKPQPGCSRAQTLEARISGVLNKLRDTAG--DHCMSTL 487
Query: 583 HFFDSYLY**MMAYNIFISLVKTGKICMGXXXXXXXXXXXXXXTLEEQPSDYVAVWIQRV 762
H+ +S L + +C+G +V +R
Sbjct: 488 HWRNSPLIMSQCGSKGSPINISQMVVCVGQQ----------------------SVGGRRA 525
Query: 763 PR*YQSDHCLCWSAISWGFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELF 942
P + D L I+ PA+ G FV NSF TGL ATE F
Sbjct: 526 PNGF-IDRTLPHFPINSKTPAAKG--------------------FVANSFYTGLTATEFF 564
Query: 943 FHTIMAGLEGLGDTAV 990
FHT M G EGL DTAV
Sbjct: 565 FHT-MGGREGLVDTAV 579
>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
brachyantha]
Length = 1389
Score = 427 bits (1097), Expect(2) = e-136
Identities = 251/494 (50%), Positives = 315/494 (63%), Gaps = 14/494 (2%)
Frame = +2
Query: 1097 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMDPSKMEGKDGSPLNFDRLYMK 1246
GYMSRRL+K LEDLS+ YD QFLYGDDGMDP+KMEG+DG PLN D+L+MK
Sbjct: 871 GYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMDPAKMEGEDGKPLNLDQLFMK 930
Query: 1247 AKATCPARGHSSLSPTEIKKLADDRLSELIMTPEGGFKEGEEAFNEGKEAFKKSLLDXXX 1426
ATCP RG ++LSP EI ++ +D+LSE + + G E FK+ L D
Sbjct: 931 VMATCPQRGQNTLSPGEILQILNDKLSEHDASSDDGCSE----------KFKQLLKDF-- 978
Query: 1427 XXXXXXXXXLYKCITSLTNTRKGLQLDEEKMGSQSL--EKVSANVAGITSQQLQVFLETC 1600
L I L +TR+ L LDE +G S E ++AN++GI+++QLQVFL+TC
Sbjct: 979 ---------LEDRIKLLKSTRRALCLDENHVGKDSSIEESIAANISGISAKQLQVFLDTC 1029
Query: 1601 ISRYYTKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAK 1780
+SRY++K+ EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN AK
Sbjct: 1030 LSRYHSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAK 1089
Query: 1781 NISTPIITAKLENDRDVRSARRVKGCIEKTVLGEIAESMKIVLESRGAYILVKLDMIRCS 1960
ISTPIITA+L + +DV SAR VKG +EK VLGE+AE +KIVL+S ++VKLDM R
Sbjct: 1090 KISTPIITAELLSGKDVLSARVVKGSMEKAVLGEVAEDIKIVLKSSQPNLVVKLDMQRIE 1149
Query: 1961 QLN--ISAISVQQXXXXXXXXXXXXXXXXXXXXXYVKVVDDRSLKILSPEEDRIKLHFAL 2134
L+ ISA SVQ +V+V+D L++ D+ KL + L
Sbjct: 1150 DLHMGISADSVQ--------LSILNHPRIKLKSEHVRVIDKAKLRVYPTAIDKSKLLYEL 1201
Query: 2135 HSLKSMLPEVVVMGVPTVERVIVSEKQKKGKGTGEYEVFVEGTNLLAVMGIPGVKGEETT 2314
H+LKSMLP+V+V G+PTVER ++S+ K Y + VEGTNLLAVMG PGV +T
Sbjct: 1202 HNLKSMLPKVIVKGIPTVERAVISQTGDK------YSLLVEGTNLLAVMGTPGVDAMKTK 1255
Query: 2315 SNHIIEVQQTLGXXXXXXXXXXXXQHIMKEYKMSIDVRHMMLLADVMTSNGEVLGITRFG 2494
SNHI+EV +TLG Q+ M + M+ID RHMMLLAD+MT GE+LGITR+G
Sbjct: 1256 SNHIMEVNRTLGIEAARRSIIDEIQYTMTSHGMNIDSRHMMLLADLMTYKGEILGITRYG 1315
Query: 2495 IQKMKESVLMLASF 2536
I KMK SVLMLASF
Sbjct: 1316 IAKMKSSVLMLASF 1329
Score = 87.4 bits (215), Expect(2) = e-136
Identities = 66/204 (32%), Positives = 86/204 (42%), Gaps = 16/204 (7%)
Frame = +1
Query: 427 KQINDALLQKYKNGTLIVQPGCDAAQTLESELTYLLNGVREKTGKVNHVMWLHFFDSYLY 606
K+ +D L+ + G L +QPGC+AAQTLE ++T++LN +RE
Sbjct: 707 KECHD-LITSFSKGALTLQPGCNAAQTLEHKITHVLNKIREAA----------------- 748
Query: 607 **MMAYNIFISLVKTGKICMGXXXXXXXXXXXXXXTLEEQPSDYVAVWIQRVPR*YQSDH 786
G ICM + P + + +
Sbjct: 749 ---------------GNICMDTLHWRNSPLIMSQCGSKGSPINISQMVV----------- 782
Query: 787 CLCWSAISWGFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTI---- 954
C+ ++ G A +GF DR LPHFP NS P AKGFV NSF GL ATE FFHT+
Sbjct: 783 CVGQQSVG-GHRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYNGLTATEFFFHTMGGIY 841
Query: 955 ------------MAGLEGLGDTAV 990
M G EGL DTAV
Sbjct: 842 IVLPATEFFFHTMGGREGLVDTAV 865
Score = 98.2 bits (243), Expect = 2e-17
Identities = 44/66 (66%), Positives = 56/66 (84%)
Frame = +1
Query: 187 QPVELWTGKQLFSVLVRPRAQMRVYVNLTVTEKSYKQGKETLCPNEGFVYIQNSELI*GQ 366
+P+ELWTGKQLFSVLVRP A +V++NLTV EK Y + +ET+CPN+GFVY +NSEL+ GQ
Sbjct: 575 KPIELWTGKQLFSVLVRPNACTKVFLNLTVKEKIYSKSRETMCPNDGFVYFRNSELLSGQ 634
Query: 367 VGEATL 384
VG+ TL
Sbjct: 635 VGKKTL 640
>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X1 [Solanum tuberosum]
Length = 1394
Score = 424 bits (1090), Expect(2) = e-135
Identities = 254/499 (50%), Positives = 318/499 (63%), Gaps = 19/499 (3%)
Frame = +2
Query: 1097 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMDPSKMEGKDGSPLNFDRLYMK 1246
GYMSRRL+KALEDL++ YD+ QF+YGDDGMDPS+ME K G PLNF RL+MK
Sbjct: 861 GYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGMDPSQMEEKKGRPLNFSRLFMK 920
Query: 1247 AKATCPARGHSSLSPTEIKKLADDRLSELIMTPEGGFKEGEEAFNEGKEAFKKSLLDXXX 1426
KATCP G SLS +EI ++ ++RLS MTPEGG E AF+ SL D
Sbjct: 921 VKATCPPGGEKSLSYSEICEIVNERLSYHDMTPEGGCSE----------AFRSSLSDFL- 969
Query: 1427 XXXXXXXXXLYKCITSLTNTRKGLQLDEEKMGSQS---LEKVSANVAGITSQQLQVFLET 1597
+ +L N R+ L L EE+ LEK++ N++GIT +QLQVFL T
Sbjct: 970 ---------IKNLAETLKNLRESLLLGEEQYEGDDRGYLEKIALNISGITKRQLQVFLNT 1020
Query: 1598 CISRYYTKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGA 1777
CISRY+ KR EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN A
Sbjct: 1021 CISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAA 1080
Query: 1778 KNISTPIITAKLENDRDVRSARRVKGCIEKTVLGEIAESMKIVLESRGAYILVKLDM--I 1951
K I+TPIIT KL + ++ +AR +K IEKT+LG++A+S+KIVL SR A I + LDM I
Sbjct: 1081 KKITTPIITTKLLSAANLTAARMIKARIEKTLLGQVAKSVKIVLASRLASIAISLDMETI 1140
Query: 1952 RCSQLNISAISVQQXXXXXXXXXXXXXXXXXXXXXYVKVVDDRSLKILSPEEDRIKLHFA 2131
+ SQL I A +V+Q +KV++ R L++ P+ ++ KLHF
Sbjct: 1141 QVSQLCIDAYTVKQ--------SILQTSKIKLKEHQIKVLNPRKLEVF-PQANKDKLHFE 1191
Query: 2132 LHSLKSMLPEVVVMGVPTVERVIVSEKQKKGKGT---GE-YEVFVEGTNLLAVMGIPGVK 2299
LH LK+ LP VVV G+ TV+R +V+++Q+K + GE YE+ VEGT LLAVMGI GV
Sbjct: 1192 LHRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTGLLAVMGIEGVD 1251
Query: 2300 GEETTSNHIIEVQQTLGXXXXXXXXXXXXQHIMKEYKMSIDVRHMMLLADVMTSNGEVLG 2479
G T SNHI+EVQ TLG + M + M+ID+RHMMLLAD+MT GEVLG
Sbjct: 1252 GRYTKSNHIMEVQNTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLADLMTYKGEVLG 1311
Query: 2480 ITRFGIQKMKESVLMLASF 2536
ITR G+QKMK+SVLMLASF
Sbjct: 1312 ITRHGVQKMKDSVLMLASF 1330
Score = 88.2 bits (217), Expect(2) = e-135
Identities = 69/188 (36%), Positives = 82/188 (43%)
Frame = +1
Query: 427 KQINDALLQKYKNGTLIVQPGCDAAQTLESELTYLLNGVREKTGKVNHVMWLHFFDSYLY 606
K+ D + Q + G L VQPGCDAAQTLE+E+T LN VR+ G
Sbjct: 714 KKCEDCITQ-FNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIG---------------- 756
Query: 607 **MMAYNIFISLVKTGKICMGXXXXXXXXXXXXXXTLEEQPSDYVAVWIQRVPR*YQSDH 786
KICM + P + Q
Sbjct: 757 ----------------KICMKALDWRNSPLIMSQCGSKGSPINIS-----------QMIA 789
Query: 787 CLCWSAISWGFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGL 966
C+ ++ G A GF DR+LPHFP S P AKGFV +SF GL ATE FFHT M G
Sbjct: 790 CVGQQSVG-GRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEFFFHT-MGGR 847
Query: 967 EGLGDTAV 990
EGL DTAV
Sbjct: 848 EGLVDTAV 855
Score = 100 bits (250), Expect = 3e-18
Identities = 47/66 (71%), Positives = 58/66 (87%)
Frame = +1
Query: 187 QPVELWTGKQLFSVLVRPRAQMRVYVNLTVTEKSYKQGKETLCPNEGFVYIQNSELI*GQ 366
+PVELWTGKQLF +L+RP ++MRVYVNLTVTEKSY ET+CP++GFVY +NSELI GQ
Sbjct: 582 KPVELWTGKQLFHMLLRPYSKMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQ 641
Query: 367 VGEATL 384
+G+ATL
Sbjct: 642 LGKATL 647
>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
lycopersicum]
Length = 1390
Score = 424 bits (1090), Expect(2) = e-135
Identities = 255/499 (51%), Positives = 318/499 (63%), Gaps = 19/499 (3%)
Frame = +2
Query: 1097 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMDPSKMEGKDGSPLNFDRLYMK 1246
GYMSRRL+KALEDL++ YD+ QF+YGDDGMDPS+ME K G PLNF RL+MK
Sbjct: 861 GYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGMDPSRMEEKKGRPLNFSRLFMK 920
Query: 1247 AKATCPARGHSSLSPTEIKKLADDRLSELIMTPEGGFKEGEEAFNEGKEAFKKSLLDXXX 1426
KATCP G SLS +EI ++ ++RLS MTPEGG E AF+ SL D
Sbjct: 921 VKATCPPGGEKSLSYSEICEIVNERLSYHDMTPEGGCSE----------AFRASLSDFL- 969
Query: 1427 XXXXXXXXXLYKCITSLTNTRKGLQLDEEKMGSQS---LEKVSANVAGITSQQLQVFLET 1597
+ +L N R+ L L EE+ LEK+ N++GIT +QLQVFL T
Sbjct: 970 ---------IKSLAETLKNLRESLLLGEEQYEGDDRGYLEKIVLNISGITKKQLQVFLNT 1020
Query: 1598 CISRYYTKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGA 1777
CISRY+ KR EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN A
Sbjct: 1021 CISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAA 1080
Query: 1778 KNISTPIITAKLENDRDVRSARRVKGCIEKTVLGEIAESMKIVLESRGAYILVKLDM--I 1951
K I+TPIITAKL + ++ +AR +K IEKT+LG++A+S+KIVL SR A I + LDM I
Sbjct: 1081 KKITTPIITAKLLSAGNLTAARMIKARIEKTLLGQVAKSVKIVLASRLASIAISLDMETI 1140
Query: 1952 RCSQLNISAISVQQXXXXXXXXXXXXXXXXXXXXXYVKVVDDRSLKILSPEEDRIKLHFA 2131
+ SQL I A +V+Q +KV++ R L++ P+ ++ KLHF
Sbjct: 1141 QVSQLCIDAYTVKQ--------SILQTSKIKLKEHQIKVLNPRKLEVF-PQANKDKLHFE 1191
Query: 2132 LHSLKSMLPEVVVMGVPTVERVIVSEKQKKGKGT---GE-YEVFVEGTNLLAVMGIPGVK 2299
LH LK+ LP VVV G+ TV+R +V+++Q+K + GE YE+ VEGT LLAVMGI GV
Sbjct: 1192 LHRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTGLLAVMGIEGVD 1251
Query: 2300 GEETTSNHIIEVQQTLGXXXXXXXXXXXXQHIMKEYKMSIDVRHMMLLADVMTSNGEVLG 2479
G T SNHI+EVQ TLG + M + M+ID+RHMMLLAD+MT GEVLG
Sbjct: 1252 GRYTKSNHIMEVQHTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLADLMTYKGEVLG 1311
Query: 2480 ITRFGIQKMKESVLMLASF 2536
ITR G+QKMK+SVLMLASF
Sbjct: 1312 ITRHGVQKMKDSVLMLASF 1330
Score = 88.2 bits (217), Expect(2) = e-135
Identities = 69/188 (36%), Positives = 82/188 (43%)
Frame = +1
Query: 427 KQINDALLQKYKNGTLIVQPGCDAAQTLESELTYLLNGVREKTGKVNHVMWLHFFDSYLY 606
K+ D + Q + G L VQPGCDAAQTLE+E+T LN VR+ G
Sbjct: 714 KKCEDCITQ-FNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIG---------------- 756
Query: 607 **MMAYNIFISLVKTGKICMGXXXXXXXXXXXXXXTLEEQPSDYVAVWIQRVPR*YQSDH 786
KICM + P + Q
Sbjct: 757 ----------------KICMKALDWRNSPLIMSQCGSKGSPINIS-----------QMIA 789
Query: 787 CLCWSAISWGFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGL 966
C+ ++ G A GF DR+LPHFP S P AKGFV +SF GL ATE FFHT M G
Sbjct: 790 CVGQQSVG-GRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEFFFHT-MGGR 847
Query: 967 EGLGDTAV 990
EGL DTAV
Sbjct: 848 EGLVDTAV 855
Score = 97.8 bits (242), Expect = 2e-17
Identities = 46/66 (69%), Positives = 57/66 (86%)
Frame = +1
Query: 187 QPVELWTGKQLFSVLVRPRAQMRVYVNLTVTEKSYKQGKETLCPNEGFVYIQNSELI*GQ 366
+PVELWTGKQLF VL+RP ++MRVYVNLT+TEKSY ET+C ++GFVY +NSELI GQ
Sbjct: 582 KPVELWTGKQLFHVLLRPYSKMRVYVNLTLTEKSYSGKGETMCSSDGFVYFRNSELISGQ 641
Query: 367 VGEATL 384
+G+ATL
Sbjct: 642 LGKATL 647
>ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi|162691719|gb|EDQ78080.1|
predicted protein [Physcomitrella patens]
Length = 1397
Score = 405 bits (1042), Expect(3) = e-135
Identities = 247/502 (49%), Positives = 308/502 (61%), Gaps = 22/502 (4%)
Frame = +2
Query: 1097 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMDPSKMEGKDGSPLNFDRLYMK 1246
GYMSRRL+KALEDLS QYD Q LYGDDGMDP MEGKDG+P N DR+ MK
Sbjct: 875 GYMSRRLMKALEDLSAQYDGTVRNSSGGIVQLLYGDDGMDPVYMEGKDGAPFNLDRMLMK 934
Query: 1247 AKATCPARGHSSLSPTEIKKLADDRLSELIMTPE--GGFKEGEEAFNEGKEAFKKSLLDX 1420
KATCP+ G L PTEI+KL ++RL++ MT E G FK + F +
Sbjct: 935 TKATCPSYGQLGLPPTEIEKLFNERLTKPDMTSETVGAFKTSLKKFMDS----------- 983
Query: 1421 XXXXXXXXXXXLYKCITS--LTNTRKGLQLDEEKMGSQSL-EKVSANVAGITSQQL---- 1579
CI T T+ GL LD Q+L E + ++G+TS+QL
Sbjct: 984 --------------CIKDNISTRTKLGLPLDCNGGPDQTLLESTATYISGLTSRQLEICL 1029
Query: 1580 -QVFLETCISRYYTKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRI 1756
QVFL+TCI RY+ KR EPGTQMTLKTFHFAGVASMN+TLGVPRI
Sbjct: 1030 LQVFLDTCIKRYHMKRVEPGAAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRI 1089
Query: 1757 KEIINGAKNISTPIITAKLENDRDVRSARRVKGCIEKTVLGEIAESMKIVLESRGAYILV 1936
KEIIN +KNISTPIITA L + D ++AR VKG IEKT LGE+A+S+K VL + A I V
Sbjct: 1090 KEIINASKNISTPIITAVLVSGNDEKAARIVKGRIEKTTLGEVAKSIKTVLRASQAIISV 1149
Query: 1937 KLDMIRCS--QLNISAISVQQXXXXXXXXXXXXXXXXXXXXXYVKVVDDRSLKILSPEED 2110
KLDM R QL+I++ +V +++VD L ++ P++D
Sbjct: 1150 KLDMKRIDALQLDINSDTV--------ALAIVQTPKIKLKHVNIRIVDRDKLIVIPPDQD 1201
Query: 2111 RIKLHFALHSLKSMLPEVVVMGVPTVERVIVSEKQKKGKGTGEYEVFVEGTNLLAVMGIP 2290
+ KL+F LHSL +MLP+V+V G+P+VER ++++++ G Y + VEGTNL AVMGI
Sbjct: 1202 KGKLYFYLHSLCNMLPKVIVKGIPSVERAVINKEK------GVYNLLVEGTNLKAVMGIS 1255
Query: 2291 GVKGEETTSNHIIEVQQTLGXXXXXXXXXXXXQHIMKEYKMSIDVRHMMLLADVMTSNGE 2470
GV G+ T SNH+IE +QTLG Q+ M + M+ID RHMMLLADVMT GE
Sbjct: 1256 GVNGKLTKSNHVIEAEQTLGIEAARNVIIDEIQYTMGSHGMTIDARHMMLLADVMTYKGE 1315
Query: 2471 VLGITRFGIQKMKESVLMLASF 2536
VLGITRFGI KMK+SVLMLASF
Sbjct: 1316 VLGITRFGIAKMKDSVLMLASF 1337
Score = 74.3 bits (181), Expect(3) = e-135
Identities = 38/59 (64%), Positives = 41/59 (69%)
Frame = +1
Query: 814 GFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 990
G A +GF DR LPHFPR+ P KGFV NSF +GL ATE FFHT M G EGL DTAV
Sbjct: 812 GKRAPNGFIDRTLPHFPRHDRTPQGKGFVANSFYSGLSATEFFFHT-MGGREGLVDTAV 869
Score = 53.5 bits (127), Expect(3) = e-135
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = +2
Query: 710 LHWRNSPLIMSQCGSKGSPDNISQIIAC 793
LHWRNSPLIMS+CGSKGS NISQ++AC
Sbjct: 777 LHWRNSPLIMSECGSKGSFINISQMVAC 804
Score = 89.0 bits (219), Expect(2) = 1e-14
Identities = 43/68 (63%), Positives = 55/68 (80%), Gaps = 2/68 (2%)
Frame = +1
Query: 187 QPVELWTGKQLFSVLVRPRAQMRVYVNLTVTEKSY--KQGKETLCPNEGFVYIQNSELI* 360
+P+ELWTGKQLFSVLVRP A+ RV+VNL EK+Y K K ++CP +G+VY +NSELI
Sbjct: 594 KPMELWTGKQLFSVLVRPNAKTRVFVNLVSYEKNYDKKANKGSMCPTDGYVYFRNSELIC 653
Query: 361 GQVGEATL 384
GQ+G+ATL
Sbjct: 654 GQLGKATL 661
Score = 20.4 bits (41), Expect(2) = 1e-14
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 401 NHGFLIGIEN 430
NHGF IGI++
Sbjct: 699 NHGFSIGIDD 708
>ref|XP_004505923.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X1 [Cicer arietinum]
Length = 1399
Score = 357 bits (916), Expect(4) = e-135
Identities = 224/496 (45%), Positives = 296/496 (59%), Gaps = 16/496 (3%)
Frame = +2
Query: 1097 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMDPSKMEGKDGSPLNFDRLYMK 1246
GYMSRRL+KALEDL + YD QF YGDDGMDPS MEGK+G PLNFDRL++K
Sbjct: 868 GYMSRRLMKALEDLFLHYDYTVRDTNGGIVQFCYGDDGMDPSGMEGKNGKPLNFDRLFLK 927
Query: 1247 AKATCPARGHSS-LSPTEIKKLADDRLSELIMTP--EGGFKEGEEAFNEG-KEAFKKSLL 1414
+KA CP+ G LS +++ ++ +LSE+ M+ E E + G + F KSL
Sbjct: 928 SKAICPSDGDDIILSSSDVCEVIRKKLSEVGMSKLVEKDASENDIMSVVGFSDDFIKSL- 986
Query: 1415 DXXXXXXXXXXXXLYKCITSLTNTRKGLQLDEEKMGSQSLEKVSANVAGITSQQLQVFLE 1594
K T LT + + +L+ ++GI+ +QL+VFL+
Sbjct: 987 -----------QAFVKDNTKLTEAIA----ENDSKNLTNLKNFIPRISGISRRQLEVFLD 1031
Query: 1595 TCISRYYTKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIING 1774
C+SRY K+ EPGTQMTLKTFHFAGVASMNVTLGVPRI EIING
Sbjct: 1032 ICLSRYRIKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIIEIING 1091
Query: 1775 AKNISTPIITAKLENDRDVRSARRVKGCIEKTVLGEIAESMKIVLESRGAYILVKLDM-- 1948
AK+I TPI+TA LE D + +AR VKG IEKT LG++A+S+K+V+ SR A +++ LDM
Sbjct: 1092 AKDIKTPIMTAILERDDNANTARMVKGRIEKTNLGQVAKSIKVVMTSRSATVVISLDMER 1151
Query: 1949 IRCSQLNISAISVQQXXXXXXXXXXXXXXXXXXXXXYVKVVDDRSLKILSPEEDRIKLHF 2128
I+ + LNI A +V++ VKV+D + L++ R ++HF
Sbjct: 1152 IQDAHLNIDAHTVKESILRTAKLKLKAEN--------VKVLDIKKLQVYPRLSGRNEIHF 1203
Query: 2129 ALHSLKSMLPEVVVMGVPTVERVIVSEKQKKGKGTGEYEVFVEGTNLLAVMGIPGVKGEE 2308
L+ LK++LP VVV GV TVER ++ E KK K ++ + VEGT L V+GI GV G +
Sbjct: 1204 QLNILKNLLPSVVVKGVKTVERAVL-EIDKKDKKVEKFALLVEGTGLQQVLGIEGVDGRK 1262
Query: 2309 TTSNHIIEVQQTLGXXXXXXXXXXXXQHIMKEYKMSIDVRHMMLLADVMTSNGEVLGITR 2488
T SNH++E+ LG Q+ M + MSIDVRH+MLLAD+MT G+VLG+TR
Sbjct: 1263 TRSNHVMEMLNVLGIEAARSTIIDQIQYTMGSHGMSIDVRHIMLLADIMTVRGQVLGMTR 1322
Query: 2489 FGIQKMKESVLMLASF 2536
GIQKM SVLMLASF
Sbjct: 1323 HGIQKMGRSVLMLASF 1338
Score = 92.0 bits (227), Expect(4) = e-135
Identities = 44/73 (60%), Positives = 58/73 (79%), Gaps = 7/73 (9%)
Frame = +1
Query: 187 QPVELWTGKQLFSVLVRPRAQMRVYVNLTVTEKSY-------KQGKETLCPNEGFVYIQN 345
+PVELW+GKQLFS+L+RP A +RVYVNLTV EK++ K+ +T+CPN+GFVY +N
Sbjct: 582 KPVELWSGKQLFSILLRPHANVRVYVNLTVKEKTHNAKLDDRKREMKTMCPNDGFVYFRN 641
Query: 346 SELI*GQVGEATL 384
SELI GQ+G+ TL
Sbjct: 642 SELISGQLGKVTL 654
Score = 83.6 bits (205), Expect(4) = e-135
Identities = 60/184 (32%), Positives = 80/184 (43%)
Frame = +1
Query: 439 DALLQKYKNGTLIVQPGCDAAQTLESELTYLLNGVREKTGKVNHVMWLHFFDSYLY**MM 618
D ++ + G L + PGCDAAQTLE+++ LN +R+ T
Sbjct: 724 DGFIEAFNKGKLELAPGCDAAQTLEAKIFQKLNSLRDTTA-------------------- 763
Query: 619 AYNIFISLVKTGKICMGXXXXXXXXXXXXXXTLEEQPSDYVAVWIQRVPR*YQSDHCLCW 798
K+CM + P + Q C+
Sbjct: 764 ------------KVCMQTLHWRNSPLIMSQCGSKGSPINIC-----------QMVACVGQ 800
Query: 799 SAISWGFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLG 978
++ G A++GF DR+LPHF + + P KGFV NSF TGL ATE FFHT M G EGL
Sbjct: 801 QSVG-GCRAANGFVDRSLPHFTKKAKTPADKGFVANSFFTGLSATEFFFHT-MGGREGLV 858
Query: 979 DTAV 990
DTAV
Sbjct: 859 DTAV 862
Score = 21.6 bits (44), Expect(4) = e-135
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 381 FSARWIGTMG 410
FSARWIG G
Sbjct: 685 FSARWIGNHG 694
>ref|XP_004505924.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X2 [Cicer arietinum]
Length = 1291
Score = 357 bits (916), Expect(4) = e-135
Identities = 224/496 (45%), Positives = 296/496 (59%), Gaps = 16/496 (3%)
Frame = +2
Query: 1097 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMDPSKMEGKDGSPLNFDRLYMK 1246
GYMSRRL+KALEDL + YD QF YGDDGMDPS MEGK+G PLNFDRL++K
Sbjct: 760 GYMSRRLMKALEDLFLHYDYTVRDTNGGIVQFCYGDDGMDPSGMEGKNGKPLNFDRLFLK 819
Query: 1247 AKATCPARGHSS-LSPTEIKKLADDRLSELIMTP--EGGFKEGEEAFNEG-KEAFKKSLL 1414
+KA CP+ G LS +++ ++ +LSE+ M+ E E + G + F KSL
Sbjct: 820 SKAICPSDGDDIILSSSDVCEVIRKKLSEVGMSKLVEKDASENDIMSVVGFSDDFIKSL- 878
Query: 1415 DXXXXXXXXXXXXLYKCITSLTNTRKGLQLDEEKMGSQSLEKVSANVAGITSQQLQVFLE 1594
K T LT + + +L+ ++GI+ +QL+VFL+
Sbjct: 879 -----------QAFVKDNTKLTEAIA----ENDSKNLTNLKNFIPRISGISRRQLEVFLD 923
Query: 1595 TCISRYYTKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIING 1774
C+SRY K+ EPGTQMTLKTFHFAGVASMNVTLGVPRI EIING
Sbjct: 924 ICLSRYRIKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIIEIING 983
Query: 1775 AKNISTPIITAKLENDRDVRSARRVKGCIEKTVLGEIAESMKIVLESRGAYILVKLDM-- 1948
AK+I TPI+TA LE D + +AR VKG IEKT LG++A+S+K+V+ SR A +++ LDM
Sbjct: 984 AKDIKTPIMTAILERDDNANTARMVKGRIEKTNLGQVAKSIKVVMTSRSATVVISLDMER 1043
Query: 1949 IRCSQLNISAISVQQXXXXXXXXXXXXXXXXXXXXXYVKVVDDRSLKILSPEEDRIKLHF 2128
I+ + LNI A +V++ VKV+D + L++ R ++HF
Sbjct: 1044 IQDAHLNIDAHTVKESILRTAKLKLKAEN--------VKVLDIKKLQVYPRLSGRNEIHF 1095
Query: 2129 ALHSLKSMLPEVVVMGVPTVERVIVSEKQKKGKGTGEYEVFVEGTNLLAVMGIPGVKGEE 2308
L+ LK++LP VVV GV TVER ++ E KK K ++ + VEGT L V+GI GV G +
Sbjct: 1096 QLNILKNLLPSVVVKGVKTVERAVL-EIDKKDKKVEKFALLVEGTGLQQVLGIEGVDGRK 1154
Query: 2309 TTSNHIIEVQQTLGXXXXXXXXXXXXQHIMKEYKMSIDVRHMMLLADVMTSNGEVLGITR 2488
T SNH++E+ LG Q+ M + MSIDVRH+MLLAD+MT G+VLG+TR
Sbjct: 1155 TRSNHVMEMLNVLGIEAARSTIIDQIQYTMGSHGMSIDVRHIMLLADIMTVRGQVLGMTR 1214
Query: 2489 FGIQKMKESVLMLASF 2536
GIQKM SVLMLASF
Sbjct: 1215 HGIQKMGRSVLMLASF 1230
Score = 92.0 bits (227), Expect(4) = e-135
Identities = 44/73 (60%), Positives = 58/73 (79%), Gaps = 7/73 (9%)
Frame = +1
Query: 187 QPVELWTGKQLFSVLVRPRAQMRVYVNLTVTEKSY-------KQGKETLCPNEGFVYIQN 345
+PVELW+GKQLFS+L+RP A +RVYVNLTV EK++ K+ +T+CPN+GFVY +N
Sbjct: 474 KPVELWSGKQLFSILLRPHANVRVYVNLTVKEKTHNAKLDDRKREMKTMCPNDGFVYFRN 533
Query: 346 SELI*GQVGEATL 384
SELI GQ+G+ TL
Sbjct: 534 SELISGQLGKVTL 546
Score = 83.6 bits (205), Expect(4) = e-135
Identities = 60/184 (32%), Positives = 80/184 (43%)
Frame = +1
Query: 439 DALLQKYKNGTLIVQPGCDAAQTLESELTYLLNGVREKTGKVNHVMWLHFFDSYLY**MM 618
D ++ + G L + PGCDAAQTLE+++ LN +R+ T
Sbjct: 616 DGFIEAFNKGKLELAPGCDAAQTLEAKIFQKLNSLRDTTA-------------------- 655
Query: 619 AYNIFISLVKTGKICMGXXXXXXXXXXXXXXTLEEQPSDYVAVWIQRVPR*YQSDHCLCW 798
K+CM + P + Q C+
Sbjct: 656 ------------KVCMQTLHWRNSPLIMSQCGSKGSPINIC-----------QMVACVGQ 692
Query: 799 SAISWGFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLG 978
++ G A++GF DR+LPHF + + P KGFV NSF TGL ATE FFHT M G EGL
Sbjct: 693 QSVG-GCRAANGFVDRSLPHFTKKAKTPADKGFVANSFFTGLSATEFFFHT-MGGREGLV 750
Query: 979 DTAV 990
DTAV
Sbjct: 751 DTAV 754
Score = 21.6 bits (44), Expect(4) = e-135
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 381 FSARWIGTMG 410
FSARWIG G
Sbjct: 577 FSARWIGNHG 586
>gb|EMS65169.1| DNA-directed RNA polymerase III subunit rpc1 [Triticum urartu]
Length = 1248
Score = 407 bits (1046), Expect(2) = e-132
Identities = 242/499 (48%), Positives = 305/499 (61%), Gaps = 19/499 (3%)
Frame = +2
Query: 1097 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMDPSKMEGKDGSPLNFDRLYMK 1246
GYMSRRL+K LEDLS+ YD QF+YGDDGMDP KMEGK G+PLN D+L+MK
Sbjct: 716 GYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFVYGDDGMDPVKMEGKGGNPLNLDQLFMK 775
Query: 1247 AKATCPARGHSSLSPTEIKKLADDRLSELIMTPEGGFKEGEEAFNEGKEAFKKSLLDXXX 1426
ATCP RGH +LSP I ++ +D+LSE P G + FK+ L
Sbjct: 776 VMATCPQRGHETLSPEAISQMLNDKLSE--QDPSAG---------GCSDRFKELLTKFVG 824
Query: 1427 XXXXXXXXXLYKCITSLTNTRKGLQLDEEKMGSQ--SLEK-VSANVAGITSQQLQVFLET 1597
I L NTR+ L LDE+ +G + S+E+ V+AN++GI+++QLQVFL+T
Sbjct: 825 NR-----------IKMLRNTRRALHLDEDHVGRKDSSIEECVAANISGISAKQLQVFLDT 873
Query: 1598 CISRYYTKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMN------VTLGVPRIK 1759
C+SRY++K EPGTQMTLKTFHFAGVASM+ VTLGVPRIK
Sbjct: 874 CLSRYHSKIIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMSILSVLYVTLGVPRIK 933
Query: 1760 EIINGAKNISTPIITAKLENDRDVRSARRVKGCIEKTVLGEIAESMKIVLESRGAYILVK 1939
EIIN AK ISTPIITA+L + +D +VK CIEK VLGE+A ++KIVL+S ++VK
Sbjct: 934 EIINAAKKISTPIITAELLSGQDESFGVKVKRCIEKVVLGEVAAAIKIVLKSSQPNLVVK 993
Query: 1940 LDMIRCSQLNISAISVQQXXXXXXXXXXXXXXXXXXXXXYVKVVDDRSLKILSPEEDRIK 2119
LDM R I+ +V+V+D+ L+I DR K
Sbjct: 994 LDMQRIEAQGYEGINADSVQLSIINYPKLKLKSQ-----HVRVIDEAKLRIYPDGTDRSK 1048
Query: 2120 LHFALHSLKSMLPEVVVMGVPTVERVIVSEKQKKGKGTGEYEVFVEGTNLLAVMGIPGVK 2299
L F LH+LKSMLP+V+V G+PTVER +V+ + + K Y + VEGTNLLAV+G PGV
Sbjct: 1049 LQFELHNLKSMLPKVIVKGIPTVERAVVNPVKGRDKTIERYNLLVEGTNLLAVLGAPGVD 1108
Query: 2300 GEETTSNHIIEVQQTLGXXXXXXXXXXXXQHIMKEYKMSIDVRHMMLLADVMTSNGEVLG 2479
+T SNHI+EV QTLG Q+ + M ID+RHMMLLAD+MT GEVLG
Sbjct: 1109 AMKTKSNHIMEVNQTLGIEAARRSIIDEIQYTFESNNMIIDLRHMMLLADLMTYKGEVLG 1168
Query: 2480 ITRFGIQKMKESVLMLASF 2536
ITR+GI KMK SVLMLASF
Sbjct: 1169 ITRYGIAKMKSSVLMLASF 1187
Score = 94.7 bits (234), Expect(2) = e-132
Identities = 102/341 (29%), Positives = 135/341 (39%), Gaps = 73/341 (21%)
Frame = +1
Query: 187 QPVELWTGKQLFSVLVRPRAQMRVYVN-------------LTVTEKSYKQGKETLCPNEG 327
+P+ELWTGKQLFSVLVRP A +VY+N LTV +K+ + + +CPN+G
Sbjct: 425 KPIELWTGKQLFSVLVRPNAFTKVYLNLGVREKICTKKCALTVEDKTSEAVHDAMCPNDG 484
Query: 328 FVYIQNSELI*GQVGEATLVLAGLEPWVLDWY*KQINDALLQKYKNGTLI---------- 477
FVY +NSEL+ GQVG+ TL L + + D L Y+ LI
Sbjct: 485 FVYFRNSELLSGQVGKKTLDLKANQ---------NLIDVLSPVYEKFVLIQGIYLFSCSA 535
Query: 478 --------------VQPG-----------------------------------CDAAQTL 510
VQPG C AQTL
Sbjct: 536 RFIGNHGFSIGVDDVQPGESLNEKKGKTIGEGYQECHELIAQYSKGALKPQPGCSRAQTL 595
Query: 511 ESELTYLLNGVREKTGKVNHVM-WLHFFDSYLY**MMAYNIFISLVKTGKICMGXXXXXX 687
E+ ++ +LN +R+ G +H M LH+ +S L + +C+G
Sbjct: 596 EARISGVLNKLRDTAG--DHCMSTLHWRNSPLIMSQCGSKGSPINISQMVVCVGQQ---- 649
Query: 688 XXXXXXXXTLEEQPSDYVAVWIQRVPR*YQSDHCLCWSAISWGFPASSGFTDRNLPHFPR 867
+V +R P + D L I+ PA+ GF
Sbjct: 650 ------------------SVGGRRAPNGF-IDRTLPHFPINSKTPAAKGF---------- 680
Query: 868 NSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 990
V NSF TGL ATE FFHT M G EGL DTAV
Sbjct: 681 ----------VANSFYTGLTATEFFFHT-MGGREGLVDTAV 710
>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein
SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 422 bits (1084), Expect(2) = e-132
Identities = 250/495 (50%), Positives = 314/495 (63%), Gaps = 15/495 (3%)
Frame = +2
Query: 1097 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMDPSKMEGKDGSPLNFDRLYMK 1246
GYMSRRL+K LEDLS+ YD QFLYGDDGMDP+KMEGKDG PLN D+L+MK
Sbjct: 867 GYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMDPAKMEGKDGMPLNLDQLFMK 926
Query: 1247 AKATCPARGHSSLSPTEIKKLADDRLSELIMTPEGGFKEGEEAFNEGKEAFKKSLLDXXX 1426
ATCP RG +LSP IK++ +D+L + + +GG E FKK+L +
Sbjct: 927 VMATCPQRGSDTLSPEAIKQMLEDKLLQHDTSSDGGCSE----------EFKKNLTEF-- 974
Query: 1427 XXXXXXXXXLYKCITSLTNTRKGLQLDE---EKMGSQSLEKVSANVAGITSQQLQVFLET 1597
L K I + TR+ L L E EK S E V+A ++GI+++QLQVFL+T
Sbjct: 975 ---------LDKRIELMKCTRRALHLHEDHVEKKDSCVEESVAAIISGISAKQLQVFLDT 1025
Query: 1598 CISRYYTKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGA 1777
C+SRY +K+ EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN A
Sbjct: 1026 CLSRYQSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAA 1085
Query: 1778 KNISTPIITAKLENDRDVRSARRVKGCIEKTVLGEIAESMKIVLESRGAYILVKLDM--I 1951
+ ISTPIITA+L + +DV SAR VKG +EK VLGE+A +++IVL+S ++VKLDM I
Sbjct: 1086 RKISTPIITAQLLSKKDVLSARIVKGSMEKAVLGEVAVAIQIVLKSSQPNLIVKLDMQLI 1145
Query: 1952 RCSQLNISAISVQQXXXXXXXXXXXXXXXXXXXXXYVKVVDDRSLKILSPEEDRIKLHFA 2131
+ ISA SVQ +V+V+D L+I D+ KL
Sbjct: 1146 ESLHMGISADSVQ--------LSILNHPKIKLKSEHVRVIDRAKLRIYPAGTDKRKLQLE 1197
Query: 2132 LHSLKSMLPEVVVMGVPTVERVIVSEKQKKGKGTGEYEVFVEGTNLLAVMGIPGVKGEET 2311
LH+LKS+LP+V+V G+PTVERV++ E + K + T Y++ VEGTNLLAVMG PGV +T
Sbjct: 1198 LHNLKSILPKVIVKGIPTVERVVIDEVKVKNE-TERYQLLVEGTNLLAVMGTPGVDATKT 1256
Query: 2312 TSNHIIEVQQTLGXXXXXXXXXXXXQHIMKEYKMSIDVRHMMLLADVMTSNGEVLGITRF 2491
SNHI+E QTLG Q+ MK + M+ID RHMMLLAD+MT GE+LGITR+
Sbjct: 1257 KSNHIMETNQTLGIEAARRSIIDEIQYTMKSHGMNIDRRHMMLLADLMTYKGEILGITRY 1316
Query: 2492 GIQKMKESVLMLASF 2536
GI KMK SVLMLASF
Sbjct: 1317 GIAKMKSSVLMLASF 1331
Score = 79.0 bits (193), Expect(2) = e-132
Identities = 61/182 (33%), Positives = 76/182 (41%)
Frame = +1
Query: 445 LLQKYKNGTLIVQPGCDAAQTLESELTYLLNGVREKTGKVNHVMWLHFFDSYLY**MMAY 624
L+ + G L + PGC+AAQTLE +T G +N + +
Sbjct: 725 LISLFAKGALALHPGCNAAQTLEHNIT----------GVLNEIRSI-------------- 760
Query: 625 NIFISLVKTGKICMGXXXXXXXXXXXXXXTLEEQPSDYVAVWIQRVPR*YQSDHCLCWSA 804
G +CM + P + Q C+ +
Sbjct: 761 --------AGNVCMDTLHWRNSPLIMSQCGSKGSPINIS-----------QMVACVGQQS 801
Query: 805 ISWGFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDT 984
+ G A GF +R LPHFP NS P AKGFV NSF TGL ATE FFHT M G EGL DT
Sbjct: 802 VG-GRRAPDGFLNRTLPHFPINSKTPAAKGFVANSFYTGLTATEFFFHT-MGGREGLVDT 859
Query: 985 AV 990
AV
Sbjct: 860 AV 861
Score = 92.4 bits (228), Expect = 9e-16
Identities = 45/79 (56%), Positives = 57/79 (72%), Gaps = 13/79 (16%)
Frame = +1
Query: 187 QPVELWTGKQLFSVLVRPRAQMRVYVNLTVTEKSYKQ-------------GKETLCPNEG 327
+P+ELWTGKQLFSVLVRP A RV++NL V EK Y + G+ET+CPN+G
Sbjct: 575 KPIELWTGKQLFSVLVRPNAHTRVFLNLAVQEKIYSKKKGKKEAGEETMCGRETMCPNDG 634
Query: 328 FVYIQNSELI*GQVGEATL 384
+VY +NSEL+ GQVG+ATL
Sbjct: 635 YVYFRNSELLSGQVGKATL 653
>ref|XP_002974416.1| hypothetical protein SELMODRAFT_442419 [Selaginella moellendorffii]
gi|300158014|gb|EFJ24638.1| hypothetical protein
SELMODRAFT_442419 [Selaginella moellendorffii]
Length = 1348
Score = 385 bits (990), Expect(2) = e-130
Identities = 225/473 (47%), Positives = 291/473 (61%), Gaps = 12/473 (2%)
Frame = +2
Query: 1097 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMDPSKMEGKDGSPLNFDRLYMK 1246
GYMSRRL+KALEDLS QYD Q +YGDD MDP MEG++G+PLN DR+ MK
Sbjct: 882 GYMSRRLMKALEDLSCQYDGTVRNSSGVIVQLIYGDDSMDPVSMEGQNGTPLNLDRVLMK 941
Query: 1247 AKATCPARGHSSLSPTEIKKLADDRLSELIMTPEGGFKEGEEAFNEGKEAFKKSLLDXXX 1426
AKATCP +L P+E+ K+ + + S+ +G E ++ +K
Sbjct: 942 AKATCPRGATPALPPSELWKIVESKFSQ----------DGSECSMAFLDSLRK------- 984
Query: 1427 XXXXXXXXXLYKCITSLTNTRKGLQLDEEKMGSQSLEKVSANVAGITSQQLQVFLETCIS 1606
L K ++++TRK L L E G+ E V+ANV+G+TS+QL+VFL TCI
Sbjct: 985 --------FLRKEFDTISSTRKRLSLPLEDFGNLDDENVAANVSGLTSRQLEVFLNTCIG 1036
Query: 1607 RYYTKRXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKNI 1786
RY+ K+ EPGTQMTLKTFHFAGVASMN+TLGVPRIKEIIN +K I
Sbjct: 1037 RYHRKKLDPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKKI 1096
Query: 1787 STPIITAKLENDRDVRSARRVKGCIEKTVLGEIAESMKIVLESRGAYILVKLDM--IRCS 1960
STPIITAKL ++ DV++AR VKG IEKT LG++A+S+KIVL A++ +KLDM I
Sbjct: 1097 STPIITAKLVSENDVKAARIVKGRIEKTALGDVAKSIKIVLRPGQAFVSIKLDMDRIYSL 1156
Query: 1961 QLNISAISVQQXXXXXXXXXXXXXXXXXXXXXYVKVVDDRSLKILSPEEDRIKLHFALHS 2140
QL+I A +V + +VKV DDRS+ + +PE DR K+ FALHS
Sbjct: 1157 QLDIRAETVAE-----AVLKFPKIKSMKLKEQHVKVNDDRSISLTTPESDRKKMLFALHS 1211
Query: 2141 LKSMLPEVVVMGVPTVERVIVSEKQKKGKGTGEYEVFVEGTNLLAVMGIPGVKGEETTSN 2320
L++MLP+V+V G+PTVER ++++++ G+Y + VEGTNL AVMG GV G ETTSN
Sbjct: 1212 LQNMLPKVIVKGIPTVERAVINQEK------GKYNLLVEGTNLKAVMGTEGVDGRETTSN 1265
Query: 2321 HIIEVQQTLGXXXXXXXXXXXXQHIMKEYKMSIDVRHMMLLADVMTSNGEVLG 2479
HI E + LG Q+ M + MSID RHMMLLADVMT GE G
Sbjct: 1266 HIFETVEVLGIEAARNGIIKEIQYTMGSHGMSIDQRHMMLLADVMTYRGEFWG 1318
Score = 110 bits (275), Expect(2) = e-130
Identities = 100/323 (30%), Positives = 139/323 (43%), Gaps = 55/323 (17%)
Frame = +1
Query: 187 QPVELWTGKQLFSVLVRPRAQMRVYVNLTVTEKSYKQGKETLCPNEGFVYIQNSELI*GQ 366
+PVELWTGKQLF VL+RP A+++V++N V EK++K+G ET+CP +G+V+ +NSELI GQ
Sbjct: 599 KPVELWTGKQLFGVLIRPSARIKVFLNFVVCEKNHKKGTETMCPKDGYVFFKNSELICGQ 658
Query: 367 VGEATL---VLAGLEPWVLDWY*KQINDALLQK-----------------YKNGTLIVQP 486
+G+ TL GL +L Y +Q + + + + G VQP
Sbjct: 659 LGKGTLGNGSKDGLFTVLLRDYGEQAAASCMNRLAKLRHSYFARWIGNHGFSIGIDDVQP 718
Query: 487 G-----------------------------------CDAAQTLESELTYLLNGVREKTGK 561
G CDAAQTLESE+T LN +RE G+
Sbjct: 719 GSRLTVEKEKRIAEGYRACDKHISLFNKGQLTLQPGCDAAQTLESEITGELNKIREAAGQ 778
Query: 562 VNHVMWLHFFDSYLY**MMAYNIFISLVKTGKICMGXXXXXXXXXXXXXXTLEEQPSDYV 741
V V LH+ +S L + + C+G P+ ++
Sbjct: 779 V-CVNELHWRNSPLIMSQCGSKGSVINISQMIACVGQQSVSG----------HRAPNGFI 827
Query: 742 AVWIQRVPR*YQSDHCLCWSAISWGFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTG 921
+ PR ++ P + GF V NSF +G
Sbjct: 828 ERSLPHFPRNDKT-------------PQAKGF--------------------VANSFYSG 854
Query: 922 LIATELFFHTIMAGLEGLGDTAV 990
L ATE FHT M G EGL DTAV
Sbjct: 855 LTATEFIFHT-MGGREGLVDTAV 876