BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver25_contig00020301
         (1255 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...   268   3e-87
emb|CBI29879.3| unnamed protein product [Vitis vinifera]              268   3e-87
emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]   256   7e-84
ref|XP_006850181.1| hypothetical protein AMTR_s00022p00245030 [A...   254   3e-83
ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phas...   254   2e-79
ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform ...   261   2e-79
ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobro...   261   2e-79
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   256   6e-79
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   254   2e-78
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ...   261   9e-78
ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobro...   261   9e-78
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...   252   3e-77
gb|EYU39881.1| hypothetical protein MIMGU_mgv1a000122mg [Mimulus...   249   3e-76
ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I sub...   239   2e-75
ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prun...   250   2e-74
ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arab...   252   3e-74
ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana...   248   1e-72
ref|XP_004299740.1| PREDICTED: DNA-directed RNA polymerase I sub...   242   9e-72
ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Caps...   244   1e-71
ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I sub...   238   1e-70

>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score =  268 bits (684), Expect(2) = 3e-87
 Identities = 156/282 (55%), Positives = 181/282 (64%), Gaps = 53/282 (18%)
 Frame = +3

Query: 3    VVLVNRQPSLHKPSIMANIVRVLEGEKTLRMHYANCSVYNADFDGDEMNVHFPQDEIS*A 182
            +VLVNRQP+LHKPSIMA++VRVL+GEKTLRMHYANCS YNADFDGDEMNVHFPQDEIS A
Sbjct: 628  IVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRA 687

Query: 183  EAYNIVNANNQYIVPTSGEPKRGLIQDHIVSDVLLTKKDTFLTRDEFYYLLYGSGVSA-- 356
            EAYNIVNANNQYIVP+ G+P RGLIQDHIVS VLLTKKDTFLTR+++  LLY SG+S+  
Sbjct: 688  EAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGLSSGS 747

Query: 357  --------------------------------------AIRSSINGYNINSKPYNSNQRT 422
                                                   I + +N      KP+ +    
Sbjct: 748  GSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTE--- 804

Query: 423  HSSDY*KV*KNTKFYF---VEESKEGN----GSEKRKISE------ELKLRIQKNELVHG 563
                  K  K  + YF   ++E K G     GS++RK         E KL I KNELV G
Sbjct: 805  ------KDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRG 858

Query: 564  VIDKNQFGSYGLVHMVQELYGSDVAGIFLSVLSRLFTLYLQV 689
            VIDK QF  YGLVHMVQELYGS+ AGI LSVLSRLFT++LQ+
Sbjct: 859  VIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQM 900



 Score = 82.8 bits (203), Expect(2) = 3e-87
 Identities = 41/76 (53%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
 Frame = +1

Query: 790  IRMHGFTCGINDL-VTPNAEKERIEKLGESETKGEKVHSLFVGSDDGDTDPMVLQEEIEK 966
            ++MHGFTCG++DL ++PN +  R  +L +SE  GE VH  F+GS+ G  DP+ LQ E+EK
Sbjct: 898  LQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEK 957

Query: 967  TIRTNGETATTRLDRM 1014
             I +NGE A TRLDRM
Sbjct: 958  IILSNGEAAITRLDRM 973


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  268 bits (684), Expect(2) = 3e-87
 Identities = 156/282 (55%), Positives = 181/282 (64%), Gaps = 53/282 (18%)
 Frame = +3

Query: 3    VVLVNRQPSLHKPSIMANIVRVLEGEKTLRMHYANCSVYNADFDGDEMNVHFPQDEIS*A 182
            +VLVNRQP+LHKPSIMA++VRVL+GEKTLRMHYANCS YNADFDGDEMNVHFPQDEIS A
Sbjct: 557  IVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRA 616

Query: 183  EAYNIVNANNQYIVPTSGEPKRGLIQDHIVSDVLLTKKDTFLTRDEFYYLLYGSGVSA-- 356
            EAYNIVNANNQYIVP+ G+P RGLIQDHIVS VLLTKKDTFLTR+++  LLY SG+S+  
Sbjct: 617  EAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGLSSGS 676

Query: 357  --------------------------------------AIRSSINGYNINSKPYNSNQRT 422
                                                   I + +N      KP+ +    
Sbjct: 677  GSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTE--- 733

Query: 423  HSSDY*KV*KNTKFYF---VEESKEGN----GSEKRKISE------ELKLRIQKNELVHG 563
                  K  K  + YF   ++E K G     GS++RK         E KL I KNELV G
Sbjct: 734  ------KDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRG 787

Query: 564  VIDKNQFGSYGLVHMVQELYGSDVAGIFLSVLSRLFTLYLQV 689
            VIDK QF  YGLVHMVQELYGS+ AGI LSVLSRLFT++LQ+
Sbjct: 788  VIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQM 829



 Score = 82.8 bits (203), Expect(2) = 3e-87
 Identities = 41/76 (53%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
 Frame = +1

Query: 790  IRMHGFTCGINDL-VTPNAEKERIEKLGESETKGEKVHSLFVGSDDGDTDPMVLQEEIEK 966
            ++MHGFTCG++DL ++PN +  R  +L +SE  GE VH  F+GS+ G  DP+ LQ E+EK
Sbjct: 827  LQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEK 886

Query: 967  TIRTNGETATTRLDRM 1014
             I +NGE A TRLDRM
Sbjct: 887  IILSNGEAAITRLDRM 902


>emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]
          Length = 1350

 Score =  256 bits (655), Expect(2) = 7e-84
 Identities = 156/300 (52%), Positives = 181/300 (60%), Gaps = 71/300 (23%)
 Frame = +3

Query: 3    VVLVNRQPSLHKPSIMANIVRVLEGEKTLRMHYANC------------------SVYNAD 128
            +VLVNRQP+LHKPSIMA++VRVL+GEKTLRMHYANC                  S YNAD
Sbjct: 676  IVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCRVESEHISMLDLDDCSDSSTYNAD 735

Query: 129  FDGDEMNVHFPQDEIS*AEAYNIVNANNQYIVPTSGEPKRGLIQDHIVSDVLLTKKDTFL 308
            FDGDEMNVHFPQDEIS AEAYNIVNANNQYIVP+ G+P RGLIQDHIVS VLLTKKDTFL
Sbjct: 736  FDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFL 795

Query: 309  TRDEFYYLLYGSGVSA----------------------------------------AIRS 368
            TR+++  LLY SG+S+                                         I +
Sbjct: 796  TREQYNQLLYSSGLSSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITA 855

Query: 369  SINGYNINSKPYNSNQRTHSSDY*KV*KNTKFYF---VEESKEGN----GSEKRKISE-- 521
             +N      KP+ +          K  K  + YF   ++E K G     GS++RK     
Sbjct: 856  VLNHITRGRKPFTTE---------KDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIE 906

Query: 522  ----ELKLRIQKNELVHGVIDKNQFGSYGLVHMVQELYGSDVAGIFLSVLSRLFTLYLQV 689
                E KL I KNELV GVIDK QF  YGLVHMVQELYGS+ AGI LSVLSRLFT++LQ+
Sbjct: 907  KKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQM 966



 Score = 82.8 bits (203), Expect(2) = 7e-84
 Identities = 41/76 (53%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
 Frame = +1

Query: 790  IRMHGFTCGINDL-VTPNAEKERIEKLGESETKGEKVHSLFVGSDDGDTDPMVLQEEIEK 966
            ++MHGFTCG++DL ++PN +  R  +L +SE  GE VH  F+GS+ G  DP+ LQ E+EK
Sbjct: 964  LQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQVEVEK 1023

Query: 967  TIRTNGETATTRLDRM 1014
             I +NGE A TRLDRM
Sbjct: 1024 IILSNGEAAITRLDRM 1039


>ref|XP_006850181.1| hypothetical protein AMTR_s00022p00245030 [Amborella trichopoda]
            gi|548853779|gb|ERN11762.1| hypothetical protein
            AMTR_s00022p00245030 [Amborella trichopoda]
          Length = 1600

 Score =  254 bits (650), Expect(2) = 3e-83
 Identities = 139/250 (55%), Positives = 171/250 (68%), Gaps = 21/250 (8%)
 Frame = +3

Query: 3    VVLVNRQPSLHKPSIMANIVRVLEGEKTLRMHYANCSVYNADFDGDEMNVHFPQDEIS*A 182
            +VLVNRQP+LHKPS+MA++ R+L+GEKTLRMHYANCS YNADFDGDEMNVHFPQDEI+ A
Sbjct: 494  IVLVNRQPTLHKPSMMAHVARILKGEKTLRMHYANCSSYNADFDGDEMNVHFPQDEIARA 553

Query: 183  EAYNIVNANNQYIVPTSGEPKRGLIQDHIVSDVLLTKKDTFLTRDEFYYLLYGSGVSAAI 362
            EAYNIVNAN QYIVPTSGEP RGLIQDHIVS VLLTKKDTFLT++E+++LLY + VS   
Sbjct: 554  EAYNIVNANEQYIVPTSGEPIRGLIQDHIVSAVLLTKKDTFLTQEEYHHLLYSACVSTVA 613

Query: 363  RSSINGYNINS---------------------KPYNSNQRTHSSDY*KV*KNTKFYFVEE 479
                +G N++                      KP  + ++  S+    V +    + V+ 
Sbjct: 614  PDFKHG-NLSKKISLVKSDEEIRPLLPAIWKPKPLWTGKQVISTILDHVTRGQPPFTVKR 672

Query: 480  SKEGNGSEKRKISEELKLRIQKNELVHGVIDKNQFGSYGLVHMVQELYGSDVAGIFLSVL 659
            +         K + E K+ + KNELVHGVIDK QFG +GLVH V ELYG+  AG   SV 
Sbjct: 673  AGRIPAGYFGKKNGEYKVLVHKNELVHGVIDKAQFGKFGLVHAVHELYGASAAGRLFSVF 732

Query: 660  SRLFTLYLQV 689
            +RLFT YLQ+
Sbjct: 733  TRLFTAYLQM 742



 Score = 82.8 bits (203), Expect(2) = 3e-83
 Identities = 40/76 (52%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
 Frame = +1

Query: 790  IRMHGFTCGINDLVTPN-AEKERIEKLGESETKGEKVHSLFVGSDDGDTDPMVLQEEIEK 966
            ++MHGFTCG++DL+    AE +R  KL ESET G+ VHS F+G+ D + DP+ +Q  IEK
Sbjct: 740  LQMHGFTCGVDDLLVRQCAEMDRRRKLDESETIGDHVHSWFIGAKDAEMDPIRMQAAIEK 799

Query: 967  TIRTNGETATTRLDRM 1014
             +R  GE+A  RLDRM
Sbjct: 800  LVRGKGESAIARLDRM 815


>ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
            gi|561018822|gb|ESW17626.1| hypothetical protein
            PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score =  254 bits (650), Expect(2) = 2e-79
 Identities = 146/268 (54%), Positives = 172/268 (64%), Gaps = 39/268 (14%)
 Frame = +3

Query: 3    VVLVNRQPSLHKPSIMANIVRVLEGEKTLRMHYANCSVYNADFDGDEMNVHFPQDEIS*A 182
            VVLVNRQP+LHKPSIMA++VRVL+GEKT+RMHYANCS YNADFDGDE+NVHFPQDEIS A
Sbjct: 534  VVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRA 593

Query: 183  EAYNIVNANNQYIVPTSGEPKRGLIQDHIVSDVLLTKKDTFLTRDEFYYLLYGSGVSAAI 362
            EAYNIVNANNQY+ PTSG+P R LIQDHIVS  LLTKKDTF+T + F  LLY SGVS   
Sbjct: 594  EAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFITYEVFIQLLYSSGVSMTG 653

Query: 363  RSSINGYNINSKPYNSNQR------------------------------THSSDY*KV*K 452
              S +G +   K + +N                                T  S    V K
Sbjct: 654  LGSFSGKH-GQKVFMTNSEFEMFLFPPAIWKPEPLWTGKQVISALLYYITRDSPPFTVEK 712

Query: 453  NTKF---YFVEESKEG------NGSEKRKISEELKLRIQKNELVHGVIDKNQFGSYGLVH 605
            N K    +F  + ++G          K +  +E KL I KN+LV GV+DK QFG YG++H
Sbjct: 713  NAKIPSNFFKTQVRDGKRHTRDKSRNKVEPDDEDKLLIYKNDLVRGVVDKAQFGDYGIIH 772

Query: 606  MVQELYGSDVAGIFLSVLSRLFTLYLQV 689
             VQELYGS VAG  LS LSRLFT +LQ+
Sbjct: 773  TVQELYGSKVAGNLLSALSRLFTTFLQM 800



 Score = 70.1 bits (170), Expect(2) = 2e-79
 Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
 Frame = +1

Query: 790  IRMHGFTCGINDL-VTPNAEKERIEKLGESETKGEKVHSLFVGSDDGDT-DPMVLQEEIE 963
            ++MHGFTCG++DL +T   + ER+++L   E  G+ VH  F+G  + D  DP+ LQ  IE
Sbjct: 798  LQMHGFTCGVDDLMITEEKDVERMDQLRSCEEIGDIVHREFIGVMNSDIIDPITLQLNIE 857

Query: 964  KTIRTNGETATTRLDR 1011
            K IR+NGE A T LDR
Sbjct: 858  KKIRSNGEAALTYLDR 873


>ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
            gi|508717458|gb|EOY09355.1| Nuclear RNA polymerase A1,
            putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score =  261 bits (666), Expect(2) = 2e-79
 Identities = 150/280 (53%), Positives = 184/280 (65%), Gaps = 51/280 (18%)
 Frame = +3

Query: 3    VVLVNRQPSLHKPSIMANIVRVLEGEKTLRMHYANCSVYNADFDGDEMNVHFPQDEIS*A 182
            VVLVNRQP+LHKPSIMA++VRVL+GEKT+RMHYANCS YNADFDGDE+NVHFPQDEIS A
Sbjct: 564  VVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRA 623

Query: 183  EAYNIVNANNQYIVPTSGEPKRGLIQDHIVSDVLLTKKDTFLTRDEFYYLLYGSGVSAAI 362
            EAYNIVNANNQY+ P++GEP R LIQDHIVS VLLTK+DTFL+RDEF  LLY SGVS+  
Sbjct: 624  EAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLA 683

Query: 363  RSSINGYN--------------------INSKPYNSNQRTHSS----------------- 431
            ++S +G                      +  KP  + ++  SS                 
Sbjct: 684  QNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKT 743

Query: 432  -----DY*KV*KN-TKFYFVEESKEGNGSEKRKISE--------ELKLRIQKNELVHGVI 569
                 D+ +  +N  K    EE++  N  +K K++E        E K+ I +N+LV GVI
Sbjct: 744  AKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVI 803

Query: 570  DKNQFGSYGLVHMVQELYGSDVAGIFLSVLSRLFTLYLQV 689
            DK QF  YGLVH VQELYGS+ AGI LSV SRLFT++LQ+
Sbjct: 804  DKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQM 843



 Score = 63.5 bits (153), Expect(2) = 2e-79
 Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
 Frame = +1

Query: 790  IRMHGFTCGINDL-VTPNAEKERIEKLGESETKGEKVH-SLFVGSDDGDTDPMVLQEEIE 963
            ++MHGFTCG++DL +  + + ER ++L + E K  + H  LF    + +T P  LQ EIE
Sbjct: 841  LQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVNSETAPTELQLEIE 900

Query: 964  KTIRTNGETATTRLDRMRVRSKLEN 1038
            +TIR +GETA T LDR  +    EN
Sbjct: 901  RTIRRDGETALTALDRKMISVLNEN 925


>ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
            gi|508717460|gb|EOY09357.1| Nuclear RNA polymerase A1
            isoform 3 [Theobroma cacao]
          Length = 1400

 Score =  261 bits (666), Expect(2) = 2e-79
 Identities = 150/280 (53%), Positives = 184/280 (65%), Gaps = 51/280 (18%)
 Frame = +3

Query: 3    VVLVNRQPSLHKPSIMANIVRVLEGEKTLRMHYANCSVYNADFDGDEMNVHFPQDEIS*A 182
            VVLVNRQP+LHKPSIMA++VRVL+GEKT+RMHYANCS YNADFDGDE+NVHFPQDEIS A
Sbjct: 272  VVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRA 331

Query: 183  EAYNIVNANNQYIVPTSGEPKRGLIQDHIVSDVLLTKKDTFLTRDEFYYLLYGSGVSAAI 362
            EAYNIVNANNQY+ P++GEP R LIQDHIVS VLLTK+DTFL+RDEF  LLY SGVS+  
Sbjct: 332  EAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLA 391

Query: 363  RSSINGYN--------------------INSKPYNSNQRTHSS----------------- 431
            ++S +G                      +  KP  + ++  SS                 
Sbjct: 392  QNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKT 451

Query: 432  -----DY*KV*KN-TKFYFVEESKEGNGSEKRKISE--------ELKLRIQKNELVHGVI 569
                 D+ +  +N  K    EE++  N  +K K++E        E K+ I +N+LV GVI
Sbjct: 452  AKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVI 511

Query: 570  DKNQFGSYGLVHMVQELYGSDVAGIFLSVLSRLFTLYLQV 689
            DK QF  YGLVH VQELYGS+ AGI LSV SRLFT++LQ+
Sbjct: 512  DKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQM 551



 Score = 63.5 bits (153), Expect(2) = 2e-79
 Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
 Frame = +1

Query: 790  IRMHGFTCGINDL-VTPNAEKERIEKLGESETKGEKVH-SLFVGSDDGDTDPMVLQEEIE 963
            ++MHGFTCG++DL +  + + ER ++L + E K  + H  LF    + +T P  LQ EIE
Sbjct: 549  LQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVNSETAPTELQLEIE 608

Query: 964  KTIRTNGETATTRLDRMRVRSKLEN 1038
            +TIR +GETA T LDR  +    EN
Sbjct: 609  RTIRRDGETALTALDRKMISVLNEN 633


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score =  256 bits (655), Expect(2) = 6e-79
 Identities = 150/268 (55%), Positives = 179/268 (66%), Gaps = 40/268 (14%)
 Frame = +3

Query: 3    VVLVNRQPSLHKPSIMANIVRVLEGEKTLRMHYANCSV-YNADFDGDEMNVHFPQDEIS* 179
            +VLVNRQP+LHKPSIMA++VRVL+GEKT+RMHYANCS+ YNADFDGDEMNVHFPQDEIS 
Sbjct: 541  IVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSITYNADFDGDEMNVHFPQDEISR 600

Query: 180  AEAYNIVNANNQYIVPTSGEPKRGLIQDHIVSDVLLTKKDTFLTRDEFYYLLYGSGVS-- 353
            AEAYNIVNANNQY+ PTSGEP R LIQDHI+S VLLTKKDTFL  DEF  LLY SG+S  
Sbjct: 601  AEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTS 660

Query: 354  -AAIRSSINGYNI-----------------NSKPYNSNQRTHSSDY*KV*KNTKFYFVEE 479
             A   S   G  I                   +P  + ++  ++    + + +  +FVE+
Sbjct: 661  KACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEK 720

Query: 480  S----------KEGNGSEKRKIS-EELK--------LRIQKNELVHGVIDKNQFGSYGLV 602
                        EGN  +K     ++LK        L I KNELV GVIDK QFG YGLV
Sbjct: 721  DVKIPRGFLILDEGNSKKKEHTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLV 780

Query: 603  HMVQELYGSDVAGIFLSVLSRLFTLYLQ 686
            H VQELYGS+ AG+ LSV+SRLFT++LQ
Sbjct: 781  HTVQELYGSNTAGLLLSVMSRLFTVFLQ 808



 Score = 66.2 bits (160), Expect(2) = 6e-79
 Identities = 38/76 (50%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
 Frame = +1

Query: 790  IRMHGFTCGINDLVTPNA-EKERIEKLGESETKGEKVHSLFVGSDDGDT-DPMVLQEEIE 963
            ++ HGFTCG++DL+     +KER ++L   E  GE+VH  F+   DG+  DPM LQ  IE
Sbjct: 807  LQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIE 866

Query: 964  KTIRTNGETATTRLDR 1011
            KTI  NGE A T LDR
Sbjct: 867  KTISYNGEAALTSLDR 882


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score =  254 bits (649), Expect(2) = 2e-78
 Identities = 150/271 (55%), Positives = 174/271 (64%), Gaps = 42/271 (15%)
 Frame = +3

Query: 3    VVLVNRQPSLHKPSIMANIVRVLEGEKTLRMHYANCSV-YNADFDGDEMNVHFPQDEIS* 179
            VVLVNRQP+LHKPSIMA++VRVL+GEKTLRMHYANCS+ YNADFDGDEMNVHFPQDE+S 
Sbjct: 556  VVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSITYNADFDGDEMNVHFPQDEVSR 615

Query: 180  AEAYNIVNANNQYIVPTSGEPKRGLIQDHIVSDVLLTKKDTFLTRDEFYYLLYGSGVSAA 359
            AEAYNIVNANNQ++ P++GEP RGLIQDHIVS VLLTKKDTFL++DEF  LLY SGVS  
Sbjct: 616  AEAYNIVNANNQFVRPSNGEPLRGLIQDHIVSAVLLTKKDTFLSQDEFNQLLYSSGVSTV 675

Query: 360  IRSSINGY------------NINSKP-----------------YNSNQRTHSSDY*KV*K 452
              +S +G              I + P                    N  T       V K
Sbjct: 676  GPNSFHGRPGQKVLWSRSEDEIQTLPPAIWKPKPLWTGKQVITAILNHITSDHPPFTVEK 735

Query: 453  NTKF---YFVEESKEGNGSEKRKIS---------EELKLRIQKNELVHGVIDKNQFGSYG 596
            + K    +F   + E    ++ K           +E K+ + KNELV GVIDK QFG YG
Sbjct: 736  DAKIPSNFFKSRANEDKPCQEEKSDKDAPAEKEPDEEKMLVYKNELVRGVIDKGQFGEYG 795

Query: 597  LVHMVQELYGSDVAGIFLSVLSRLFTLYLQV 689
            LVH V EL GS  AGI LSVLSRLFT YLQ+
Sbjct: 796  LVHTVHELLGSHTAGILLSVLSRLFTAYLQM 826



 Score = 67.0 bits (162), Expect(2) = 2e-78
 Identities = 35/77 (45%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
 Frame = +1

Query: 790  IRMHGFTCGINDL-VTPNAEKERIEKLGESETKGEKVHSLFVGSDDGDT--DPMVLQEEI 960
            ++MHGFTCG++DL +  N ++ER ++L   E  GE VH  F+G  D     DP+ +Q  I
Sbjct: 824  LQMHGFTCGVDDLLILTNKDEERKKQLEWCEKSGEAVHRNFIGIKDEKIKIDPVAMQLNI 883

Query: 961  EKTIRTNGETATTRLDR 1011
            EKTIR++G++A   LDR
Sbjct: 884  EKTIRSDGDSALAYLDR 900


>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
            gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
            putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score =  261 bits (666), Expect(2) = 9e-78
 Identities = 150/280 (53%), Positives = 184/280 (65%), Gaps = 51/280 (18%)
 Frame = +3

Query: 3    VVLVNRQPSLHKPSIMANIVRVLEGEKTLRMHYANCSVYNADFDGDEMNVHFPQDEIS*A 182
            VVLVNRQP+LHKPSIMA++VRVL+GEKT+RMHYANCS YNADFDGDE+NVHFPQDEIS A
Sbjct: 564  VVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRA 623

Query: 183  EAYNIVNANNQYIVPTSGEPKRGLIQDHIVSDVLLTKKDTFLTRDEFYYLLYGSGVSAAI 362
            EAYNIVNANNQY+ P++GEP R LIQDHIVS VLLTK+DTFL+RDEF  LLY SGVS+  
Sbjct: 624  EAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLA 683

Query: 363  RSSINGYN--------------------INSKPYNSNQRTHSS----------------- 431
            ++S +G                      +  KP  + ++  SS                 
Sbjct: 684  QNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKT 743

Query: 432  -----DY*KV*KN-TKFYFVEESKEGNGSEKRKISE--------ELKLRIQKNELVHGVI 569
                 D+ +  +N  K    EE++  N  +K K++E        E K+ I +N+LV GVI
Sbjct: 744  AKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVI 803

Query: 570  DKNQFGSYGLVHMVQELYGSDVAGIFLSVLSRLFTLYLQV 689
            DK QF  YGLVH VQELYGS+ AGI LSV SRLFT++LQ+
Sbjct: 804  DKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQM 843



 Score = 58.2 bits (139), Expect(2) = 9e-78
 Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
 Frame = +1

Query: 790  IRMHGFTCGINDL-VTPNAEKERIEKLGESETKGEKVH-SLFVGSDDGDTDPMVLQEEIE 963
            ++MHGFTCG++DL +  + + ER ++L + E K  + H  LF    + +T+   LQ EIE
Sbjct: 841  LQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVNSETE---LQLEIE 897

Query: 964  KTIRTNGETATTRLDRMRVRSKLEN 1038
            +TIR +GETA T LDR  +    EN
Sbjct: 898  RTIRRDGETALTALDRKMISVLNEN 922


>ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
            gi|508717461|gb|EOY09358.1| Nuclear RNA polymerase A1
            isoform 4 [Theobroma cacao]
          Length = 1397

 Score =  261 bits (666), Expect(2) = 9e-78
 Identities = 150/280 (53%), Positives = 184/280 (65%), Gaps = 51/280 (18%)
 Frame = +3

Query: 3    VVLVNRQPSLHKPSIMANIVRVLEGEKTLRMHYANCSVYNADFDGDEMNVHFPQDEIS*A 182
            VVLVNRQP+LHKPSIMA++VRVL+GEKT+RMHYANCS YNADFDGDE+NVHFPQDEIS A
Sbjct: 272  VVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRA 331

Query: 183  EAYNIVNANNQYIVPTSGEPKRGLIQDHIVSDVLLTKKDTFLTRDEFYYLLYGSGVSAAI 362
            EAYNIVNANNQY+ P++GEP R LIQDHIVS VLLTK+DTFL+RDEF  LLY SGVS+  
Sbjct: 332  EAYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLA 391

Query: 363  RSSINGYN--------------------INSKPYNSNQRTHSS----------------- 431
            ++S +G                      +  KP  + ++  SS                 
Sbjct: 392  QNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKT 451

Query: 432  -----DY*KV*KN-TKFYFVEESKEGNGSEKRKISE--------ELKLRIQKNELVHGVI 569
                 D+ +  +N  K    EE++  N  +K K++E        E K+ I +N+LV GVI
Sbjct: 452  AKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVI 511

Query: 570  DKNQFGSYGLVHMVQELYGSDVAGIFLSVLSRLFTLYLQV 689
            DK QF  YGLVH VQELYGS+ AGI LSV SRLFT++LQ+
Sbjct: 512  DKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQM 551



 Score = 58.2 bits (139), Expect(2) = 9e-78
 Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
 Frame = +1

Query: 790  IRMHGFTCGINDL-VTPNAEKERIEKLGESETKGEKVH-SLFVGSDDGDTDPMVLQEEIE 963
            ++MHGFTCG++DL +  + + ER ++L + E K  + H  LF    + +T+   LQ EIE
Sbjct: 549  LQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVNSETE---LQLEIE 605

Query: 964  KTIRTNGETATTRLDRMRVRSKLEN 1038
            +TIR +GETA T LDR  +    EN
Sbjct: 606  RTIRRDGETALTALDRKMISVLNEN 630


>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            tuberosum]
          Length = 1675

 Score =  252 bits (644), Expect(2) = 3e-77
 Identities = 149/264 (56%), Positives = 172/264 (65%), Gaps = 35/264 (13%)
 Frame = +3

Query: 3    VVLVNRQPSLHKPSIMANIVRVLEGEKTLRMHYANCSVYNADFDGDEMNVHFPQDEIS*A 182
            VVLVNRQP+LHKPSIMA++VRVL+GEKTLRMHYANCS YNADFDGDEMNVHFPQDEIS A
Sbjct: 564  VVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRA 623

Query: 183  EAYNIVNANNQYIVPTSGEPKRGLIQDHIVSDVLLTKKDTFLTRDEFYYLLYGSGVSAAI 362
            EAYNIVNAN QYIVPT G+  RGLIQDHIV  V+LT K+TFLT  EF  LLYGSGV AA 
Sbjct: 624  EAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVILTMKNTFLTLHEFNQLLYGSGVFAAG 683

Query: 363  RSSINGYNINS--------------------KPYNS---------NQRTHSSDY*KV*KN 455
             +  +G + N                     KP  +         N  T       V   
Sbjct: 684  PAPTSGNHSNKVSVVDFEGVVQTVLPAVWKPKPLWTGKQVITALLNHLTKGCAPCTVKNK 743

Query: 456  TKF---YFVEESK---EGNGSEKRKISEELKLRIQKNELVHGVIDKNQFGSYGLVHMVQE 617
             K    YF+ ES+     +  E+   + E +  I KNELV GVIDK QFG +GLVH +QE
Sbjct: 744  GKIPYPYFLSESRLVEYQSREEQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQE 803

Query: 618  LYGSDVAGIFLSVLSRLFTLYLQV 689
            LYGS+ AGI LS LSRLFT++LQ+
Sbjct: 804  LYGSNKAGILLSALSRLFTIFLQL 827



 Score = 64.7 bits (156), Expect(2) = 3e-77
 Identities = 37/84 (44%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
 Frame = +1

Query: 790  IRMHGFTCGINDLVT-PNAEKERIEKLGESETKGEKVHSLFVGSDDGDTDPMVLQEEIEK 966
            +++HGFTCG++DLV  P+ +  R E+L E +  GE+ H  FV    G+  P+ LQ EIEK
Sbjct: 825  LQLHGFTCGVDDLVILPHYDIRRKEEL-EGDDVGEEAHCDFVKFKRGEIGPLELQLEIEK 883

Query: 967  TIRTNGETATTRLDRMRVRSKLEN 1038
             + +N E AT  LD M++++KL N
Sbjct: 884  AMSSNKEAATAALD-MKMKNKLAN 906


>gb|EYU39881.1| hypothetical protein MIMGU_mgv1a000122mg [Mimulus guttatus]
          Length = 1719

 Score =  249 bits (635), Expect(2) = 3e-76
 Identities = 142/260 (54%), Positives = 170/260 (65%), Gaps = 31/260 (11%)
 Frame = +3

Query: 3    VVLVNRQPSLHKPSIMANIVRVLEGEKTLRMHYANCSVYNADFDGDEMNVHFPQDEIS*A 182
            +VLVNRQP+LHKPSIMA++VRVL GE+TLRMHYANCS YNADFDGDE+NVHFPQDEIS A
Sbjct: 587  IVLVNRQPTLHKPSIMAHVVRVLHGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRA 646

Query: 183  EAYNIVNANNQYIVPTSGEPKRGLIQDHIVSDVLLTKKDTFLTRDEFYYLLYGSGVSAAI 362
            EAYNIVNAN QYIVPT G+  RGLIQDHIV  VLLT K+TF+ R EF  LLYGSGV A+ 
Sbjct: 647  EAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVLLTMKNTFVNRSEFNQLLYGSGVFASG 706

Query: 363  RSSINGYNINS--------------------KPYNSNQRTHSSDY*KV*KNTKFYFVEES 482
              S+   N                       +P  + ++  ++    + +    + VE  
Sbjct: 707  PGSLPKNNSRKVTLIDTEGVVESVLPAIWKPEPLWTGKQVITALLNHITRGCAPFTVENQ 766

Query: 483  KE-------GN----GSEKRKISEELKLRIQKNELVHGVIDKNQFGSYGLVHMVQELYGS 629
             +       GN    G E    + E  L + KNELV GVIDK QFG +GLVH VQELYG+
Sbjct: 767  GKIPKNYFFGNSYTRGEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGA 826

Query: 630  DVAGIFLSVLSRLFTLYLQV 689
              AGIFLS LSR+FTL+LQ+
Sbjct: 827  SSAGIFLSALSRVFTLFLQI 846



 Score = 65.1 bits (157), Expect(2) = 3e-76
 Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
 Frame = +1

Query: 790  IRMHGFTCGINDL-VTPNAEKERIEKLGESETKGEKVHSLFVGSDDGDTDPMVLQEEIEK 966
            +++HGFTCG++DL + P+ + +R EKL E E  GE VH  FV    G   P  LQ EIEK
Sbjct: 844  LQIHGFTCGVDDLIILPDYDDQRKEKL-EGEDVGEVVHCDFVKFKPGQIGPDELQLEIEK 902

Query: 967  TIRTNGETATTRLDRMRVRSKLEN 1038
             I T+ E+AT  LD M++++KL +
Sbjct: 903  VICTDRESATASLD-MKMKNKLNS 925


>ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like
            [Brachypodium distachyon]
          Length = 1868

 Score =  239 bits (610), Expect(2) = 2e-75
 Identities = 133/256 (51%), Positives = 169/256 (66%), Gaps = 27/256 (10%)
 Frame = +3

Query: 3    VVLVNRQPSLHKPSIMANIVRVLEGEKTLRMHYANCSVYNADFDGDEMNVHFPQDEIS*A 182
            +VLVNRQP+LHKPS+MA+ VRVL GEKT+RMHYANCS YNADFDGDEMNVHFPQDEIS A
Sbjct: 764  IVLVNRQPTLHKPSMMAHFVRVLPGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRA 823

Query: 183  EAYNIVNANNQYIVPTSGEPKRGLIQDHIVSDVLLTKKDTFLTRDEFYYLLYGSGVSAAI 362
            EA NIV+AN QYI P SG+  RGLIQDHIVS VLLTK DTF++R+E+  L+YGS VS+  
Sbjct: 824  EAMNIVDANKQYIGPRSGDAVRGLIQDHIVSAVLLTKLDTFISREEYSQLVYGSCVSSTR 883

Query: 363  RSSINGYNIN-----------------SKPYNSNQRTHSSDY*KV*KNTKFYFVEES--- 482
                +G  ++                  KP  + ++  ++    + K    + VE+    
Sbjct: 884  SPCQSGKRVSVMKDGDILELLPPAILKPKPLWTGKQVITTILNHLTKGHPPFTVEKKGKI 943

Query: 483  -------KEGNGSEKRKISEELKLRIQKNELVHGVIDKNQFGSYGLVHMVQELYGSDVAG 641
                   KE +G +      E  L I  NEL+ G+IDK+QFG+YG+VH V ELYG++ AG
Sbjct: 944  PVKYLIPKERHGDKDNAKDSEQVLYIHDNELIKGMIDKDQFGNYGIVHTVYELYGAETAG 1003

Query: 642  IFLSVLSRLFTLYLQV 689
              LS+ SRLFTL+LQ+
Sbjct: 1004 RLLSIFSRLFTLFLQL 1019



 Score = 71.6 bits (174), Expect(2) = 2e-75
 Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
 Frame = +1

Query: 790  IRMHGFTCGINDLVT-PNAEKERIEKLGESETKGEKVHSLFVGSDDGDTDPMVLQEEIEK 966
            +++HGFTCGI+DL+    ++K+R E L  SE   E+VH  F  + D D DP+ LQ E+EK
Sbjct: 1017 LQLHGFTCGIDDLLLFQESDKQRTETLMTSEKCSEEVHRKFTCAGDYDEDPLKLQMEVEK 1076

Query: 967  TIRTNGETATTRLDRM 1014
             +R  GE+AT  LD+M
Sbjct: 1077 VVRRIGESATDTLDKM 1092


>ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prunus persica]
            gi|462398594|gb|EMJ04262.1| hypothetical protein
            PRUPE_ppa000153mg [Prunus persica]
          Length = 1612

 Score =  250 bits (638), Expect(2) = 2e-74
 Identities = 151/284 (53%), Positives = 177/284 (62%), Gaps = 55/284 (19%)
 Frame = +3

Query: 3    VVLVNRQPSLHKPSIMANIVRVLEGEKTLRMHYANCSVYNADFDGDEMNVHFPQDEIS*A 182
            +VLVNRQP+LHKPSIMA++VRVL+GEKT+RMHYANCS YNADFDGDEMNVHFPQDEIS +
Sbjct: 467  IVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRS 526

Query: 183  EAYNIVNANNQYIVPTSGEPKRGLIQDHIVSDVLLTKKDTFLTRDEFYYLLYGSGVSAAI 362
            EAYNIVNANNQY+ PTSG+P R LIQDH++S VLLTKKDTFL  D+F  LLY S VSA +
Sbjct: 527  EAYNIVNANNQYVKPTSGDPIRALIQDHVISAVLLTKKDTFLRWDQFNQLLYSSCVSARV 586

Query: 363  RSSING------YNINS------------KPYN-----------SNQRTHSSDY*KV*KN 455
              + +G      +  NS            KP              N  T  S    V ++
Sbjct: 587  SDAFSGKPDKKVFMFNSEGTMQPLLPAIWKPEPLWTGKQVITALLNHITRGSPPVTVERD 646

Query: 456  TKF---YF----VE-ESKEGNGSEKRKIS------------------EELKLRIQKNELV 557
             K    +F    VE E K GN  +++K                    +E  L I +N LV
Sbjct: 647  AKIPRGFFNCKNVEGEDKSGNDGQQKKRKPSKEQATDKDSSKEKEEPDENHLLIYRNNLV 706

Query: 558  HGVIDKNQFGSYGLVHMVQELYGSDVAGIFLSVLSRLFTLYLQV 689
             GVIDK QFG YGLVH VQE YGSD AG  LSVLS LFT+YLQ+
Sbjct: 707  RGVIDKAQFGDYGLVHTVQEFYGSDTAGKLLSVLSHLFTVYLQM 750



 Score = 57.8 bits (138), Expect(2) = 2e-74
 Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
 Frame = +1

Query: 790  IRMHGFTCGINDLVTPNAEKERI-EKLGESETKGEKVHSLFVGSDDGDT-DPMVLQEEIE 963
            ++MHGFTCGI+DL+   ++  ++ ++L   E  GE V+  F+   D    DP+ LQ  IE
Sbjct: 748  LQMHGFTCGIDDLLLLESKDAKMKDQLESCEDVGENVYRDFIEVKDVKRKDPVELQLNIE 807

Query: 964  KTIRTNGETATTRLDRMRVRSKLEN 1038
              IR+NGE+A   LDR R+ S+L N
Sbjct: 808  NFIRSNGESALASLDR-RMISQLNN 831


>ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
            lyrata] gi|297322267|gb|EFH52688.1| hypothetical protein
            ARALYDRAFT_486216 [Arabidopsis lyrata subsp. lyrata]
          Length = 1678

 Score =  252 bits (644), Expect(2) = 3e-74
 Identities = 149/273 (54%), Positives = 176/273 (64%), Gaps = 44/273 (16%)
 Frame = +3

Query: 3    VVLVNRQPSLHKPSIMANIVRVLEGEKTLRMHYANCSVYNADFDGDEMNVHFPQDEIS*A 182
            VVLVNRQP+LHKPS+MA+IVRVL GEKTLR+HYANCS YNADFDGDEMNVHFPQDEIS A
Sbjct: 563  VVLVNRQPTLHKPSLMAHIVRVLRGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRA 622

Query: 183  EAYNIVNANNQYIVPTSGEPKRGLIQDHIVSDVLLTKKDTFLTRDEFYYLLYGSGVSAAI 362
            EAYNIVNANNQY  P++G+P R LIQDHIVS VLLTK+DTFL +D F  LL+ SGV+  +
Sbjct: 623  EAYNIVNANNQYARPSNGDPLRALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTDMV 682

Query: 363  RSSINGYNINSKPYNS-----------------------------NQRTHSSDY*KV*KN 455
             SS +G +      ++                             NQ T       V K 
Sbjct: 683  LSSFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVLNQITKGHPPFTVEKA 742

Query: 456  TKF---YFVEESKE-----GNGSEKRKISE-------ELKLRIQKNELVHGVIDKNQFGS 590
            TK    +F   S+E     G+ ++K+KI E       E KL I+KNE V GVIDK QF  
Sbjct: 743  TKLPVDFFKCRSREVKPNSGDLTKKKKIDESWKQNLNEDKLLIRKNEFVCGVIDKAQFAD 802

Query: 591  YGLVHMVQELYGSDVAGIFLSVLSRLFTLYLQV 689
            YGLVH V ELYGS+ AG  LSV SRLFT++LQ+
Sbjct: 803  YGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQI 835



 Score = 54.7 bits (130), Expect(2) = 3e-74
 Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
 Frame = +1

Query: 790  IRMHGFTCGINDL-VTPNAEKERIEKLGESETKGEKVHSLFVGSD-DGDTDPMVLQEEIE 963
            +++HGFTCG++DL +  + ++ER ++L E E  GE+V     G D D   DP  ++  IE
Sbjct: 833  LQIHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFGIDVDVQIDPQDMRSRIE 892

Query: 964  KTIRTNGETATTRLDR 1011
            + +  +GE+A   LDR
Sbjct: 893  RILYEDGESALASLDR 908


>ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana]
            gi|4678281|emb|CAB41189.1| DNA-directed RNA polymerase I
            190K chain-like protein [Arabidopsis thaliana]
            gi|332646163|gb|AEE79684.1| nuclear RNA polymerase A1
            [Arabidopsis thaliana]
          Length = 1670

 Score =  248 bits (632), Expect(2) = 1e-72
 Identities = 146/272 (53%), Positives = 175/272 (64%), Gaps = 44/272 (16%)
 Frame = +3

Query: 3    VVLVNRQPSLHKPSIMANIVRVLEGEKTLRMHYANCSVYNADFDGDEMNVHFPQDEIS*A 182
            +VLVNRQP+LHKPS+MA+ VRVL+GEKTLR+HYANCS YNADFDGDEMNVHFPQDEIS A
Sbjct: 561  IVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRA 620

Query: 183  EAYNIVNANNQYIVPTSGEPKRGLIQDHIVSDVLLTKKDTFLTRDEFYYLLYGSGVSAAI 362
            EAYNIVNANNQY  P++GEP R LIQDHIVS VLLTK+DTFL +D F  LL+ SGV+  +
Sbjct: 621  EAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTDMV 680

Query: 363  RSSINGYNINSKPYNS-----------------------------NQRTHSSDY*KV*KN 455
             S+ +G +      ++                             NQ T       V K 
Sbjct: 681  LSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVLNQITKGHPPFTVEKA 740

Query: 456  TKF---YFVEESKE-----GNGSEKRKISE-------ELKLRIQKNELVHGVIDKNQFGS 590
            TK    +F   S+E     G+ ++K++I E       E KL I+KNE V GVIDK QF  
Sbjct: 741  TKLPVDFFKCRSREVKPNSGDLTKKKEIDESWKQNLNEDKLHIRKNEFVCGVIDKAQFAD 800

Query: 591  YGLVHMVQELYGSDVAGIFLSVLSRLFTLYLQ 686
            YGLVH V ELYGS+ AG  LSV SRLFT++LQ
Sbjct: 801  YGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQ 832



 Score = 53.9 bits (128), Expect(2) = 1e-72
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
 Frame = +1

Query: 790  IRMHGFTCGINDL-VTPNAEKERIEKLGESETKGEKVHSLFVGSD-DGDTDPMVLQEEIE 963
            ++ HGFTCG++DL +  + ++ER ++L E E  GE+V     G D D   DP  ++  IE
Sbjct: 831  LQTHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFGIDVDVQIDPQDMRSRIE 890

Query: 964  KTIRTNGETATTRLDR 1011
            + +  +GE+A   LDR
Sbjct: 891  RILYEDGESALASLDR 906


>ref|XP_004299740.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Fragaria
            vesca subsp. vesca]
          Length = 1673

 Score =  242 bits (617), Expect(2) = 9e-72
 Identities = 149/283 (52%), Positives = 169/283 (59%), Gaps = 54/283 (19%)
 Frame = +3

Query: 3    VVLVNRQPSLHKPSIMANIVRVLEGEKTLRMHYANCSVYNADFDGDEMNVHFPQDEIS*A 182
            +VLVNRQP+LHKPSIMA+IVRVL+GEKTLRMHYANCS YNADFDGDEMNVHFPQDEIS A
Sbjct: 546  IVLVNRQPTLHKPSIMAHIVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRA 605

Query: 183  EAYNIVNANNQYIVPTSGEPKRGLIQDHIVSDVLLTKKDTFLTRDEFYYLLYGSGVSAAI 362
            EAYN+VNANNQY+ PTSG P R LIQDHI+S + L+K DTF   DE   LLY S VSA  
Sbjct: 606  EAYNLVNANNQYVKPTSGFPIRALIQDHIISSLFLSKTDTFFDLDEINQLLYSSSVSACG 665

Query: 363  RSSING------YNINS------------KPYNS-----------NQRTHSSDY*KV*KN 455
              + +G         NS            KP              N+ T  S      K 
Sbjct: 666  SETFSGKPGQKVLMSNSEDAMQLPLPAIWKPVRKWPGKQIITTLLNRITSGSPPLTFEKE 725

Query: 456  TKF---YF-----VEESKEGNG---------------SEKRKISE--ELKLRIQKNELVH 560
             K    +F     VEE +   G                + R+I E  E KL I KN LV 
Sbjct: 726  AKLPSGFFNCKTPVEEERSAKGHRAKEKQSRIKEAGKDDSREIEEPDESKLLIYKNNLVR 785

Query: 561  GVIDKNQFGSYGLVHMVQELYGSDVAGIFLSVLSRLFTLYLQV 689
            GVIDKNQFG YGLVH V ELYGS+ AG  LS  SRL+T+YLQ+
Sbjct: 786  GVIDKNQFGDYGLVHNVHELYGSEAAGKLLSAFSRLYTVYLQM 828



 Score = 57.0 bits (136), Expect(2) = 9e-72
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
 Frame = +1

Query: 790  IRMHGFTCGIND-LVTPNAEKERIEKLGESETKGEKVHSLFVGSDDGD-TDPMVLQEEIE 963
            ++MHGFTCG++D L+  + +K+  E+L   E  GEKV   F+G    +    ++LQ +IE
Sbjct: 826  LQMHGFTCGVDDLLLLQSKDKKMKEQLESCEELGEKVIREFIGVRQNERKGALILQSDIE 885

Query: 964  KTIRTNGETATTRLDR 1011
            + +R NGE+ +  LDR
Sbjct: 886  EFLRNNGESVSEMLDR 901


>ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Capsella rubella]
            gi|482559195|gb|EOA23386.1| hypothetical protein
            CARUB_v10016563mg [Capsella rubella]
          Length = 1651

 Score =  244 bits (622), Expect(2) = 1e-71
 Identities = 145/273 (53%), Positives = 174/273 (63%), Gaps = 44/273 (16%)
 Frame = +3

Query: 3    VVLVNRQPSLHKPSIMANIVRVLEGEKTLRMHYANCSVYNADFDGDEMNVHFPQDEIS*A 182
            VVLVNRQP+LHKPS+MA+IVRVL+GEKTLR+HYANCS YNADFDGDEMNVHFPQDEIS A
Sbjct: 549  VVLVNRQPTLHKPSLMAHIVRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRA 608

Query: 183  EAYNIVNANNQYIVPTSGEPKRGLIQDHIVSDVLLTKKDTFLTRDEFYYLLYGSGVSAAI 362
            EAYNIVNANNQY  P++G+P R LIQDHIVS VLLTK+DTFL +D F  LL+ SGV+  +
Sbjct: 609  EAYNIVNANNQYARPSNGDPLRALIQDHIVSSVLLTKRDTFLDKDLFNQLLFSSGVTDMV 668

Query: 363  RSSINGYNINSKPYNS-----------------------------NQRTHSSDY*KV*KN 455
             SS +G +      ++                             N  T       V K 
Sbjct: 669  LSSFSGKSGKKVTISASDAELLTVMPAILKPVPLWTGKQVITTVLNLITKGHPPFTVEKA 728

Query: 456  TKF---YFVEESKE-----GNGSEKRKISE-------ELKLRIQKNELVHGVIDKNQFGS 590
            TK    +F   S+E     G+ ++K+ I E       E KL I+KNE V GVIDK QF  
Sbjct: 729  TKLPVDFFKCRSREVKPNTGDLTKKKDIDESWKQDLNEDKLLIRKNEFVCGVIDKAQFAD 788

Query: 591  YGLVHMVQELYGSDVAGIFLSVLSRLFTLYLQV 689
            +G+VH V ELYGS+ AG  LSV SRLFT +LQ+
Sbjct: 789  FGMVHTVHELYGSNAAGNLLSVFSRLFTAFLQI 821



 Score = 54.7 bits (130), Expect(2) = 1e-71
 Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
 Frame = +1

Query: 790  IRMHGFTCGINDL-VTPNAEKERIEKLGESETKGEKVHSLFVGSD-DGDTDPMVLQEEIE 963
            +++HGFTCG++DL +  + ++ER ++L E E  GE+V     G D D   DP  ++  IE
Sbjct: 819  LQIHGFTCGVDDLIILKDMDEERTKQLQECEKVGERVLRKTFGIDVDRQIDPQDMRSRIE 878

Query: 964  KTIRTNGETATTRLDR 1011
            + +  +GE+A   LDR
Sbjct: 879  RILYEDGESALASLDR 894


>ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Setaria
            italica]
          Length = 1682

 Score =  238 bits (606), Expect(2) = 1e-70
 Identities = 134/257 (52%), Positives = 167/257 (64%), Gaps = 29/257 (11%)
 Frame = +3

Query: 3    VVLVNRQPSLHKPSIMANIVRVLEGEKTLRMHYANCSVYNADFDGDEMNVHFPQDEIS*A 182
            +VLVNRQP+LHKPS+MA+ VRVL GEKT+RMHYANCS YNADFDGDEMNVHFPQDEIS A
Sbjct: 567  IVLVNRQPTLHKPSMMAHFVRVLPGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRA 626

Query: 183  EAYNIVNANNQYIVPTSGEPKRGLIQDHIVSDVLLTKKDTFLTRDEFYYLLYGSGVSAAI 362
            EA NIV+AN QYI P SG+  RGLIQDHIV  VLLTK+DT L+R+E+  L+YGS V +  
Sbjct: 627  EAMNIVDANKQYIGPRSGDAVRGLIQDHIVGAVLLTKQDTLLSREEYSQLVYGSCVPSNW 686

Query: 363  RSSINGYNINS-----------------KPYNSNQRTHSSDY*KV*KNTKFYFVEESK-- 485
                 G  +++                 KP  + ++  ++    + K    + VE+    
Sbjct: 687  GPRQPGIKVSAIKDDDALGFVLPAILKPKPLWTGKQVITTILNHLTKGRSPFTVEQKGKI 746

Query: 486  ----------EGNGSEKRKISEELKLRIQKNELVHGVIDKNQFGSYGLVHMVQELYGSDV 635
                      E + SE++    EL L I+ NEL+ G+IDK QFG YG+VH V ELYG+D 
Sbjct: 747  SEEHLTPKKFEESESERKIAISELVLYIKNNELIKGMIDKAQFGQYGIVHTVHELYGADT 806

Query: 636  AGIFLSVLSRLFTLYLQ 686
            AGI LS  SRLFTL+LQ
Sbjct: 807  AGILLSTFSRLFTLFLQ 823



 Score = 57.4 bits (137), Expect(2) = 1e-70
 Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
 Frame = +1

Query: 790  IRMHGFTCGINDLVT-PNAEKERIEKLGESETKGEKVHSLFVGSD-DGDTDPMVLQEEIE 963
            ++ HGFTCG++DL+    A++ R   + ES+   EK H  F+ +  DG+     LQ E+E
Sbjct: 822  LQFHGFTCGVDDLLLCQKADEARRSIISESDKYSEKAHGTFIKTGKDGEE----LQMEVE 877

Query: 964  KTIRTNGETATTRLDR 1011
            K IR +GE+AT  +DR
Sbjct: 878  KVIRRDGESATVNMDR 893