BLASTX nr result
ID: Papaver25_contig00018493
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver25_contig00018493
(1529 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun... 123 9e-37
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub... 116 3e-33
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th... 98 1e-30
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian... 98 1e-30
gb|AAB95289.1| unknown protein [Arabidopsis thaliana] 98 1e-30
emb|CBI40152.3| unnamed protein product [Vitis vinifera] 124 1e-29
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 124 1e-29
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu... 132 3e-28
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 131 9e-28
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 129 4e-27
ref|XP_002299207.2| hypothetical protein POPTR_0001s06460g [Popu... 123 2e-25
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr... 117 1e-23
ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, put... 113 2e-22
gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus... 113 3e-22
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no... 111 8e-22
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub... 110 2e-21
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac... 109 3e-21
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub... 108 8e-21
ref|XP_007219786.1| hypothetical protein PRUPE_ppa024567mg [Prun... 79 8e-20
ref|XP_007133762.1| hypothetical protein PHAVU_011G206900g [Phas... 103 2e-19
>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
gi|462415343|gb|EMJ20080.1| hypothetical protein
PRUPE_ppa000088mg [Prunus persica]
Length = 1855
Score = 123 bits (309), Expect(2) = 9e-37
Identities = 65/140 (46%), Positives = 86/140 (61%)
Frame = -1
Query: 593 STEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGGPNNLQGTPDDQSRLNAS 414
S E+ W Q + K + + + W SS G+WKNK P G +D S + A
Sbjct: 1641 SGERNHQWGQHRGDQTKKNRF---EGARNWVSS-PGEWKNKNRPPKSPGMVNDNSTMGA- 1695
Query: 413 GIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLENVFK 234
+YT TRQRLD FT+EEQ LS ++ ++ ++R+IM QS DG PLS +DQ+ VL+NVF
Sbjct: 1696 -LYTVTRQRLDMFTSEEQDVLSNIEPVMRSLRRIMHQSGYNDGDPLSGDDQSFVLDNVFN 1754
Query: 233 YHPDKDVKMGCGIDHVMVCR 174
YHPDK KMGCGIDH+ V R
Sbjct: 1755 YHPDKAAKMGCGIDHLTVNR 1774
Score = 58.9 bits (141), Expect(2) = 9e-37
Identities = 63/299 (21%), Positives = 99/299 (33%), Gaps = 34/299 (11%)
Frame = -2
Query: 1504 QNSSAPGGWNTKSQPSQNDPNDSWGGQAEKANSTGGWNTNK------------QPSLKNP 1361
Q+S++ + S D + +WG K N+T W T +
Sbjct: 1369 QDSNSAEAQLDSKKSSVLDTSSAWGKNPAKENTTSTWGTTTASENDWCGRGVGEDDSATL 1428
Query: 1360 NSSAPGGWNTKSQPSQN----DPNNSWGGLAEKGISTGGWNTKKQPSQD------DPNDS 1211
+ G NT S + N D ++WG K ST W T + D +DS
Sbjct: 1429 SGKKSGVLNTSSAWATNTAREDAASAWGTNPAKENSTSTWGTTRANENDWCGREVGQDDS 1488
Query: 1210 WGGQVEKAN---TPDGWNTKTQPSQAEPRDSWGGLVEKTNTTGGWNTKMQSSQD------ 1058
V+K++ T W T T ++ + +WG K NTT W T S D
Sbjct: 1489 ASLSVKKSSVLDTSSAWATNT--AREDAASAWGKHPAKENTTSTWGTTTASENDWCGRGV 1546
Query: 1057 ---EPRGSWGEQVEKANTTAGWNTKTQPSQVEPDDSWGGLVEXXXXXXXXXXXTRSSQAE 887
+ G++ NT++ W T T ++ +
Sbjct: 1547 GHDDSASLSGKKSSVLNTSSVWATNT------------------------------ARED 1576
Query: 886 ARDCWGGLGEKTNTTGGWNAQKRPQDDPSDSWGGHVEKANTTGQNGKEGNGQWNQWSEP 710
A WG K NTT W ++D G VE + ++ + + W P
Sbjct: 1577 ATSAWGKNPAKENTTSTWGTTTASENDWCGREAGKVEPVDLQPTKPQDDSASLSGWDSP 1635
>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
sinensis]
Length = 1865
Score = 116 bits (291), Expect(2) = 3e-33
Identities = 67/138 (48%), Positives = 85/138 (61%), Gaps = 1/138 (0%)
Frame = -1
Query: 590 TEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGG-PNNLQGTPDDQSRLNAS 414
TE +V RKEP K + GW SS+ G+WK K P G +D S +NA
Sbjct: 1665 TEMQVWGQSRKEP---------FKKNRGWASSS-GEWKGKKNRPPRSPGVVNDDSTVNA- 1713
Query: 413 GIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLENVFK 234
+YT TRQRLD FT+EEQ LS V+ I+ +IR+IM QS DG LSA+D++ + +NVF
Sbjct: 1714 -MYTVTRQRLDMFTSEEQDILSHVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFN 1772
Query: 233 YHPDKDVKMGCGIDHVMV 180
YHPDK +KMG GIDH V
Sbjct: 1773 YHPDKAMKMGAGIDHFKV 1790
Score = 54.3 bits (129), Expect(2) = 3e-33
Identities = 69/301 (22%), Positives = 102/301 (33%), Gaps = 36/301 (11%)
Frame = -2
Query: 1498 SSAPGGWNTKSQPSQNDPNDSWGGQAEKANSTGGWNTNKQPSLKNPN---SSAPGGWNTK 1328
S P GW T++ SWG +S W P+ K+ + + A G +
Sbjct: 1364 SRKPSGWGTEA---------SWG-----ESSCDKWENVGSPAAKSFSEWGTEASWGKSFG 1409
Query: 1327 SQPSQNDP----NNSWGGLAEKGISTGGWNTKKQPSQDDPNDSWGGQVEKANTPDGWNTK 1160
+P P ++ WG A G S+G S P WG + + + +
Sbjct: 1410 DKPENVSPAAKTSSGWGSEASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEE 1469
Query: 1159 TQPSQAEPRDSWGG----------LVEKT-----NTTGGWNTKMQSSQDEPRGSWGEQVE 1025
+ + A+P +WG +EK N GW T+ Q S W E +
Sbjct: 1470 VETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKS--SDWSEWKD 1527
Query: 1024 KANTTAGW--NTKTQPSQVEPDDSWGGLVEXXXXXXXXXXXTRSSQAEARDCWGGLG--- 860
AN TA W N + S + SW SS AR+ + G
Sbjct: 1528 HANATASWGRNGSEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWED 1587
Query: 859 -------EKT--NTTGGWNAQKRPQDDPSDSWGGHVEKANTTGQNGKEGNGQWNQWSEPP 707
EK+ + GGWN D S WG N G + Q + +E P
Sbjct: 1588 SSKPSANEKSIVHQIGGWNVPDAKGTDDS-CWGKQKLTENAKGTDDSSWGKQKHTENESP 1646
Query: 706 K 704
+
Sbjct: 1647 Q 1647
>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
Length = 1976
Score = 98.2 bits (243), Expect(2) = 1e-30
Identities = 56/143 (39%), Positives = 80/143 (55%)
Frame = -1
Query: 593 STEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGGPNNLQGTPDDQSRLNAS 414
S EK+ + P K F SS GW + DWK G N+ P +S N +
Sbjct: 1669 SREKDDKERSQWGNPAKKFP-----SSGGWSNGGGADWK--GNRNHTPRPP--RSEDNLA 1719
Query: 413 GIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLENVFK 234
++TATRQRLD FT+EEQ LS+V+ ++ +RKIM S DG P+S +D+ VLE +
Sbjct: 1720 PMFTATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILN 1779
Query: 233 YHPDKDVKMGCGIDHVMVCRAAI 165
+HP K+ K+G G+D + V + I
Sbjct: 1780 FHPQKETKLGSGVDFITVDKHTI 1802
Score = 63.5 bits (153), Expect(2) = 1e-30
Identities = 64/309 (20%), Positives = 108/309 (34%), Gaps = 38/309 (12%)
Frame = -2
Query: 1504 QNSSAPGGWNTKSQPSQNDPNDSWGGQAEK-----ANSTGGWNTNKQPS---LKNPNSSA 1349
+ A WNT+ ++ +DS G K A++T W T+ P + N
Sbjct: 1352 EKEDAWSSWNTRKDAQESSKSDSGGAWGIKTKDADADTTPNWETSPAPKDSIVPENNEPT 1411
Query: 1348 PGGWNTKSQPSQNDPNNSWG------GLAEKGISTGGWNTKKQPSQDDPNDSWGGQVEKA 1187
W KS ++ +WG + G + KK + +WG + +K
Sbjct: 1412 SDVWGHKSVSDKSWDKKNWGTESAPAAWGSTDAAVWGSSDKKNSETESDAAAWGSR-DKN 1470
Query: 1186 NTPDG--------WNTKTQPSQAEPRDSWGGLVEKTNTTGGWNT--KMQSSQDEPRGSWG 1037
N+ G WN K+ +++ +WG + + WN+ K D +WG
Sbjct: 1471 NSDVGSGAGVLGPWNKKSSETESNGA-TWGSSDKTKSGAAAWNSWDKKNIETDSEPAAWG 1529
Query: 1036 EQVEKANTT----AGWNT-KTQPSQVEPDDSWGGL-------VEXXXXXXXXXXXTRSSQ 893
Q +K + T A W + S+ EP + G+ E +S
Sbjct: 1530 SQGKKNSETESGPAAWGAWDKKKSETEPGPAGWGMGDKKNSETELGPAAMGNWDKKKSDT 1589
Query: 892 AEARDCWGGLGEKTNTTGGWNAQKRPQDDPSDS--WGGHVEKANTTGQNGKEGNGQWNQW 719
WG T+ ++ K + SD+ WG +K + + G G W W
Sbjct: 1590 KSGPAAWGS----TDAAAWGSSDKNNSETESDAAAWGSRNKKTSEI----ESGAGAWGSW 1641
Query: 718 SEPPKNETD 692
+P D
Sbjct: 1642 GQPSPTAED 1650
>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
Full=DNA-directed RNA polymerase V subunit 1; AltName:
Full=DNA-directed RNA polymerase D subunit 1b;
Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
AltName: Full=DNA-directed RNA polymerase E subunit 1;
Short=Nuclear RNA polymerase E 1; AltName: Full=Protein
DEFECTIVE IN MERISTEM SILENCING 5; AltName: Full=Protein
DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; AltName:
Full=Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1;
AltName: Full=RNA polymerase IV subunit 1; Short=POL IV 1
gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase
alpha subunit [Arabidopsis thaliana]
gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase
large subunit [Arabidopsis thaliana]
gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
[Arabidopsis thaliana]
Length = 1976
Score = 98.2 bits (243), Expect(2) = 1e-30
Identities = 56/143 (39%), Positives = 80/143 (55%)
Frame = -1
Query: 593 STEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGGPNNLQGTPDDQSRLNAS 414
S EK+ + P K F SS GW + DWK G N+ P +S N +
Sbjct: 1669 SREKDDKERSQWGNPAKKFP-----SSGGWSNGGGADWK--GNRNHTPRPP--RSEDNLA 1719
Query: 413 GIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLENVFK 234
++TATRQRLD FT+EEQ LS+V+ ++ +RKIM S DG P+S +D+ VLE +
Sbjct: 1720 PMFTATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILN 1779
Query: 233 YHPDKDVKMGCGIDHVMVCRAAI 165
+HP K+ K+G G+D + V + I
Sbjct: 1780 FHPQKETKLGSGVDFITVDKHTI 1802
Score = 63.5 bits (153), Expect(2) = 1e-30
Identities = 64/309 (20%), Positives = 108/309 (34%), Gaps = 38/309 (12%)
Frame = -2
Query: 1504 QNSSAPGGWNTKSQPSQNDPNDSWGGQAEK-----ANSTGGWNTNKQPS---LKNPNSSA 1349
+ A WNT+ ++ +DS G K A++T W T+ P + N
Sbjct: 1352 EKEDAWSSWNTRKDAQESSKSDSGGAWGIKTKDADADTTPNWETSPAPKDSIVPENNEPT 1411
Query: 1348 PGGWNTKSQPSQNDPNNSWG------GLAEKGISTGGWNTKKQPSQDDPNDSWGGQVEKA 1187
W KS ++ +WG + G + KK + +WG + +K
Sbjct: 1412 SDVWGHKSVSDKSWDKKNWGTESAPAAWGSTDAAVWGSSDKKNSETESDAAAWGSR-DKN 1470
Query: 1186 NTPDG--------WNTKTQPSQAEPRDSWGGLVEKTNTTGGWNT--KMQSSQDEPRGSWG 1037
N+ G WN K+ +++ +WG + + WN+ K D +WG
Sbjct: 1471 NSDVGSGAGVLGPWNKKSSETESNGA-TWGSSDKTKSGAAAWNSWDKKNIETDSEPAAWG 1529
Query: 1036 EQVEKANTT----AGWNT-KTQPSQVEPDDSWGGL-------VEXXXXXXXXXXXTRSSQ 893
Q +K + T A W + S+ EP + G+ E +S
Sbjct: 1530 SQGKKNSETESGPAAWGAWDKKKSETEPGPAGWGMGDKKNSETELGPAAMGNWDKKKSDT 1589
Query: 892 AEARDCWGGLGEKTNTTGGWNAQKRPQDDPSDS--WGGHVEKANTTGQNGKEGNGQWNQW 719
WG T+ ++ K + SD+ WG +K + + G G W W
Sbjct: 1590 KSGPAAWGS----TDAAAWGSSDKNNSETESDAAAWGSRNKKTSEI----ESGAGAWGSW 1641
Query: 718 SEPPKNETD 692
+P D
Sbjct: 1642 GQPSPTAED 1650
>gb|AAB95289.1| unknown protein [Arabidopsis thaliana]
Length = 839
Score = 98.2 bits (243), Expect(2) = 1e-30
Identities = 56/143 (39%), Positives = 80/143 (55%)
Frame = -1
Query: 593 STEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGGPNNLQGTPDDQSRLNAS 414
S EK+ + P K F SS GW + DWK G N+ P +S N +
Sbjct: 532 SREKDDKERSQWGNPAKKFP-----SSGGWSNGGGADWK--GNRNHTPRPP--RSEDNLA 582
Query: 413 GIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLENVFK 234
++TATRQRLD FT+EEQ LS+V+ ++ +RKIM S DG P+S +D+ VLE +
Sbjct: 583 PMFTATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILN 642
Query: 233 YHPDKDVKMGCGIDHVMVCRAAI 165
+HP K+ K+G G+D + V + I
Sbjct: 643 FHPQKETKLGSGVDFITVDKHTI 665
Score = 63.5 bits (153), Expect(2) = 1e-30
Identities = 64/309 (20%), Positives = 108/309 (34%), Gaps = 38/309 (12%)
Frame = -2
Query: 1504 QNSSAPGGWNTKSQPSQNDPNDSWGGQAEK-----ANSTGGWNTNKQPS---LKNPNSSA 1349
+ A WNT+ ++ +DS G K A++T W T+ P + N
Sbjct: 215 EKEDAWSSWNTRKDAQESSKSDSGGAWGIKTKDADADTTPNWETSPAPKDSIVPENNEPT 274
Query: 1348 PGGWNTKSQPSQNDPNNSWG------GLAEKGISTGGWNTKKQPSQDDPNDSWGGQVEKA 1187
W KS ++ +WG + G + KK + +WG + +K
Sbjct: 275 SDVWGHKSVSDKSWDKKNWGTESAPAAWGSTDAAVWGSSDKKNSETESDAAAWGSR-DKN 333
Query: 1186 NTPDG--------WNTKTQPSQAEPRDSWGGLVEKTNTTGGWNT--KMQSSQDEPRGSWG 1037
N+ G WN K+ +++ +WG + + WN+ K D +WG
Sbjct: 334 NSDVGSGAGVLGPWNKKSSETESNGA-TWGSSDKTKSGAAAWNSWDKKNIETDSEPAAWG 392
Query: 1036 EQVEKANTT----AGWNT-KTQPSQVEPDDSWGGL-------VEXXXXXXXXXXXTRSSQ 893
Q +K + T A W + S+ EP + G+ E +S
Sbjct: 393 SQGKKNSETESGPAAWGAWDKKKSETEPGPAGWGMGDKKNSETELGPAAMGNWDKKKSDT 452
Query: 892 AEARDCWGGLGEKTNTTGGWNAQKRPQDDPSDS--WGGHVEKANTTGQNGKEGNGQWNQW 719
WG T+ ++ K + SD+ WG +K + + G G W W
Sbjct: 453 KSGPAAWGS----TDAAAWGSSDKNNSETESDAAAWGSRNKKTSEI----ESGAGAWGSW 504
Query: 718 SEPPKNETD 692
+P D
Sbjct: 505 GQPSPTAED 513
>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 124 bits (310), Expect(2) = 1e-29
Identities = 69/140 (49%), Positives = 91/140 (65%), Gaps = 1/140 (0%)
Frame = -1
Query: 590 TEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGG-PNNLQGTPDDQSRLNAS 414
+E + W Q +P + S GWGS+NT +WKNK PN QG +D +A
Sbjct: 1676 SETQSQWGQPSGKKSRP------EGSRGWGSNNT-EWKNKKNRPNKPQGPLNDD--YSAG 1726
Query: 413 GIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLENVFK 234
GI+TATRQR+D FT+EEQ L +V+ I+ +IR+IM Q+ DG PLSA+DQ+ +L+ VF
Sbjct: 1727 GIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFN 1786
Query: 233 YHPDKDVKMGCGIDHVMVCR 174
HPDK VKMG GID+VMV R
Sbjct: 1787 NHPDKAVKMGTGIDYVMVSR 1806
Score = 34.7 bits (78), Expect(2) = 1e-29
Identities = 56/285 (19%), Positives = 101/285 (35%), Gaps = 12/285 (4%)
Frame = -2
Query: 1516 SQDDQNSSAPGGWNTKSQPSQNDPNDSWGGQAEKANSTGGWNTNKQPSLKNPNSSAPGGW 1337
+++ SS GW+ K +WG +KA +T T++ +P SS G
Sbjct: 1416 TREPDESSRSAGWDDKG---------TWG--TDKAQNTAFRRTHED----SPRSS--GRD 1458
Query: 1336 NTKSQPSQNDPNNSWGGLAEKGISTGGWNTKKQPSQDDPNDSWGGQVEKANTPDGWNTKT 1157
T +++WG ++ TG +P D +S+ W+ K
Sbjct: 1459 ETFRDGRPQFASSAWGKKIDEADKTGWNKNDGKPQMDKLRESYD-----------WDCKV 1507
Query: 1156 QPSQAEPRDSWGGLVEKTNTTGGWNT---KMQSSQDEP----RGSWG-----EQVEKANT 1013
+ + ++GG+ ++TTG W +M+ Q + SW + + +A T
Sbjct: 1508 AQEKTT-QSTYGGI---SSTTGDWKKNELQMEVVQHDESPVNEHSWDANLPEDPLAQATT 1563
Query: 1012 TAGWNTKTQPSQVEPDDSWGGLVEXXXXXXXXXXXTRSSQAEARDCWGGLGEKTNTTGGW 833
+ GW++ T + +S + RD + +
Sbjct: 1564 SVGWDSSTGKDWTK-------------------RKLQSPSEQQRD-----PAIKSWSSSH 1599
Query: 832 NAQKRPQDDPSDSWGGHVEKANTTGQNGKEGNGQWNQWSEPPKNE 698
N K + P+ + G + G N E QWNQ KN+
Sbjct: 1600 NVMKEQSNQPASTHGW--DSPGAKGWNDVEEQSQWNQRGSAVKND 1642
>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
Length = 1830
Score = 124 bits (310), Expect(2) = 1e-29
Identities = 69/140 (49%), Positives = 91/140 (65%), Gaps = 1/140 (0%)
Frame = -1
Query: 590 TEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGG-PNNLQGTPDDQSRLNAS 414
+E + W Q +P + S GWGS+NT +WKNK PN QG +D +A
Sbjct: 1616 SETQSQWGQPSGKKSRP------EGSRGWGSNNT-EWKNKKNRPNKPQGPLNDD--YSAG 1666
Query: 413 GIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLENVFK 234
GI+TATRQR+D FT+EEQ L +V+ I+ +IR+IM Q+ DG PLSA+DQ+ +L+ VF
Sbjct: 1667 GIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFN 1726
Query: 233 YHPDKDVKMGCGIDHVMVCR 174
HPDK VKMG GID+VMV R
Sbjct: 1727 NHPDKAVKMGTGIDYVMVSR 1746
Score = 34.7 bits (78), Expect(2) = 1e-29
Identities = 56/285 (19%), Positives = 101/285 (35%), Gaps = 12/285 (4%)
Frame = -2
Query: 1516 SQDDQNSSAPGGWNTKSQPSQNDPNDSWGGQAEKANSTGGWNTNKQPSLKNPNSSAPGGW 1337
+++ SS GW+ K +WG +KA +T T++ +P SS G
Sbjct: 1356 TREPDESSRSAGWDDKG---------TWG--TDKAQNTAFRRTHED----SPRSS--GRD 1398
Query: 1336 NTKSQPSQNDPNNSWGGLAEKGISTGGWNTKKQPSQDDPNDSWGGQVEKANTPDGWNTKT 1157
T +++WG ++ TG +P D +S+ W+ K
Sbjct: 1399 ETFRDGRPQFASSAWGKKIDEADKTGWNKNDGKPQMDKLRESYD-----------WDCKV 1447
Query: 1156 QPSQAEPRDSWGGLVEKTNTTGGWNT---KMQSSQDEP----RGSWG-----EQVEKANT 1013
+ + ++GG+ ++TTG W +M+ Q + SW + + +A T
Sbjct: 1448 AQEKTT-QSTYGGI---SSTTGDWKKNELQMEVVQHDESPVNEHSWDANLPEDPLAQATT 1503
Query: 1012 TAGWNTKTQPSQVEPDDSWGGLVEXXXXXXXXXXXTRSSQAEARDCWGGLGEKTNTTGGW 833
+ GW++ T + +S + RD + +
Sbjct: 1504 SVGWDSSTGKDWTK-------------------RKLQSPSEQQRD-----PAIKSWSSSH 1539
Query: 832 NAQKRPQDDPSDSWGGHVEKANTTGQNGKEGNGQWNQWSEPPKNE 698
N K + P+ + G + G N E QWNQ KN+
Sbjct: 1540 NVMKEQSNQPASTHGW--DSPGAKGWNDVEEQSQWNQRGSAVKND 1582
>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
gi|550343552|gb|EEE78905.2| hypothetical protein
POPTR_0003s19630g [Populus trichocarpa]
Length = 1920
Score = 132 bits (333), Expect = 3e-28
Identities = 71/137 (51%), Positives = 92/137 (67%)
Frame = -1
Query: 584 KEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGGPNNLQGTPDDQSRLNASGIY 405
++ W Q+ + F + S GWGS+N GDWKNK N P + LNASGI+
Sbjct: 1724 RDQQWGQQS----REFKKDRFEGSRGWGSNN-GDWKNK---RNRPSKPHED--LNASGIF 1773
Query: 404 TATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLENVFKYHP 225
T TRQRLD FT++EQ LS+++ ++L+IR+IM Q+ DG PLSA+DQ+ VL+NVF YHP
Sbjct: 1774 TTTRQRLDVFTSQEQDILSDIEPLMLSIRRIMHQTGYNDGDPLSADDQSYVLDNVFHYHP 1833
Query: 224 DKDVKMGCGIDHVMVCR 174
DK VKMG GIDHV V R
Sbjct: 1834 DKAVKMGAGIDHVTVSR 1850
Score = 62.0 bits (149), Expect = 7e-07
Identities = 63/296 (21%), Positives = 105/296 (35%), Gaps = 20/296 (6%)
Frame = -2
Query: 1525 KQPSQDDQNSSAPGGWNTKSQPSQNDPNDSWGGQAEKANSTG--GWNTNKQPSLKNPNSS 1352
K+P D + GW+ K SQ+ W + + +T GW++ NP +
Sbjct: 1460 KRPEDQDVGTH---GWDDKM--SQDQSISGWASKTTQEATTESLGWDSKGN---SNPGDA 1511
Query: 1351 APGGWNTKSQPSQN-DPNNSWGG--LAEKGISTGGWNTKKQPSQDDPNDSWGGQVEKANT 1181
A G + ++N D + WG + + + GW K P + + WG E +
Sbjct: 1512 ACGWKAASTWGAENTDGDKLWGKEVSSNQADTASGWGKPKSP---EISLGWGSTKESVKS 1568
Query: 1180 PDGWNTKTQPSQAEPRDSWGGLVEKTNTTGGWNTKMQSSQDEPRGSWGEQVEKANTTAGW 1001
GW + + + L + +GGW K+ S+Q + WG+ N+
Sbjct: 1569 DRGWGVSSSGGGRDKKTENQSLAGQGKESGGWGNKVTSNQADTASGWGKPKSSENSQGWG 1628
Query: 1000 NTKTQPSQVE----PDDSWGGLVEXXXXXXXXXXXTRSSQAEARDCWG--GLGEKTNTTG 839
+K +V P+ + G E + ++ W + T
Sbjct: 1629 LSKESGKEVHEWGVPNSAGGNGSETNNNNENQSLVEQGKESG----WDNKASSNQEGTAS 1684
Query: 838 GWNAQKRPQDDPSDSWGGHVEKA---------NTTGQNGKEGNGQWNQWSEPPKNE 698
GW K P S+ WG E N+ G NG + QW Q S K +
Sbjct: 1685 GWGKPKSPA--LSEGWGSPREPVKAVHGWGVPNSGGGNGSGRDQQWGQQSREFKKD 1738
>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1-like [Cucumis sativus]
Length = 2019
Score = 131 bits (329), Expect = 9e-28
Identities = 73/154 (47%), Positives = 93/154 (60%), Gaps = 16/154 (10%)
Frame = -1
Query: 587 EKEVHWSQRKEPPVKPFAWGTNK------SSHGWGSSN---------TGDWKN-KGGPNN 456
E + W Q+K P V WG+NK SSHGW N G+WKN K P
Sbjct: 1781 ETSLGWEQQKSPEVS-HGWGSNKESSEQTSSHGWDKKNQGSKGWGGNAGEWKNRKNRPPK 1839
Query: 455 LQGTPDDQSRLNASGIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPL 276
G +D + L A +YTA+ QRLD FT+EEQ L++++ I+ +IRK+M QS DG PL
Sbjct: 1840 SPGMSNDDANLRA--LYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPL 1897
Query: 275 SAEDQANVLENVFKYHPDKDVKMGCGIDHVMVCR 174
SAEDQ+ VL++VF +HPDK KMG GIDH MV R
Sbjct: 1898 SAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSR 1931
>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 129 bits (324), Expect = 4e-27
Identities = 72/154 (46%), Positives = 93/154 (60%), Gaps = 16/154 (10%)
Frame = -1
Query: 587 EKEVHWSQRKEPPVKPFAWGTNK------SSHGWGSSN---------TGDWKN-KGGPNN 456
E + W Q+K P V WG++K SSHGW N G+WKN K P
Sbjct: 1721 ETSLGWEQQKSPEVS-HGWGSHKESSEQTSSHGWDKKNQGSKGWGGNAGEWKNRKNRPPK 1779
Query: 455 LQGTPDDQSRLNASGIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPL 276
G +D + L A +YTA+ QRLD FT+EEQ L++++ I+ +IRK+M QS DG PL
Sbjct: 1780 SPGMSNDDANLRA--LYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPL 1837
Query: 275 SAEDQANVLENVFKYHPDKDVKMGCGIDHVMVCR 174
SAEDQ+ VL++VF +HPDK KMG GIDH MV R
Sbjct: 1838 SAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSR 1871
>ref|XP_002299207.2| hypothetical protein POPTR_0001s06460g [Populus trichocarpa]
gi|550346662|gb|EEE84012.2| hypothetical protein
POPTR_0001s06460g [Populus trichocarpa]
Length = 888
Score = 123 bits (309), Expect = 2e-25
Identities = 65/138 (47%), Positives = 91/138 (65%)
Frame = -1
Query: 590 TEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGGPNNLQGTPDDQSRLNASG 411
+E++ W Q+ F + S GWGS+N G WK + P+ P + S ++SG
Sbjct: 754 SERDQQWGQQSGE----FKKNRTEGSRGWGSNN-GHWKKRNRPSK----PHEDS--SSSG 802
Query: 410 IYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLENVFKY 231
++T TRQ LD FT++EQ LS+V+ ++L+IR+IM Q+ DG PLSA+DQ+ VL+NVF Y
Sbjct: 803 LFTMTRQWLDIFTSQEQDILSDVEPLMLSIRRIMHQTGYSDGDPLSADDQSYVLDNVFNY 862
Query: 230 HPDKDVKMGCGIDHVMVC 177
HPDK VKMG GI+HV VC
Sbjct: 863 HPDKAVKMGAGINHVTVC 880
Score = 66.6 bits (161), Expect = 3e-08
Identities = 77/315 (24%), Positives = 111/315 (35%), Gaps = 52/315 (16%)
Frame = -2
Query: 1480 WNTKSQPSQNDPNDSWGGQAEKANSTGGWNTNKQPSLKNPNSSAPGGWNTKSQPSQNDPN 1301
WN KS +Q D + G +A A+S G NT+ A W K +Q D +
Sbjct: 495 WNKKSNSNQTDA--ACGSKA--ASSWGAKNTD-----------ADKRWGRKVDLNQADTS 539
Query: 1300 NSWG---------GLAEKGISTGGWNTKKQPSQ---DDPNDSWGGQVEKANTPDGWNTKT 1157
SWG GL+ G S G K +Q D +S G + + W+ K
Sbjct: 540 CSWGRSKTPDRGWGLSNSGGSIGSEMENKTENQSLLDRGKESVGWGTKNTDADKPWSNKV 599
Query: 1156 QPSQAEPRDSWGGLVE-----KTNTTGGWNTKMQSSQDEPRGSWGEQVEKANTTAGWNTK 992
+QA+ WG + +GG N +++ E + Q+E + GW K
Sbjct: 600 NSNQADTASGWGKSKSLDRGWGVSNSGGGNGNEMNNKTENQ----SQLEGGKESGGWGAK 655
Query: 991 TQPSQVEPDDSWGGLVEXXXXXXXXXXXTRSSQAEARDCWG-----GLGEKTNTTGGWNA 827
+ D WG V S+QA+ CWG LG + +GG N
Sbjct: 656 ----NTDADKPWGNKV-------------NSNQADTASCWGKPKSPDLGWGVSNSGGGNG 698
Query: 826 QKRPQDDPSDS--------------------WGGHVEKA---------NTTGQNGKEGNG 734
+ + S WG + N+ G NG E +
Sbjct: 699 SEMEDKTENQSLLDRGKESGGWGKPKSISQGWGSSKDSVKAVDGWGVPNSAGSNGSERDQ 758
Query: 733 QWNQWS-EPPKNETD 692
QW Q S E KN T+
Sbjct: 759 QWGQQSGEFKKNRTE 773
>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
gi|557522591|gb|ESR33958.1| hypothetical protein
CICLE_v10004129mg [Citrus clementina]
Length = 1867
Score = 117 bits (293), Expect = 1e-23
Identities = 67/138 (48%), Positives = 86/138 (62%), Gaps = 1/138 (0%)
Frame = -1
Query: 590 TEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGG-PNNLQGTPDDQSRLNAS 414
TE +V RKEP K + GW SS+ G+WK K P G +D S +NA
Sbjct: 1667 TEMQVWGQSRKEP---------FKKNRGWASSS-GEWKGKKNRPPRSPGVVNDDSTVNA- 1715
Query: 413 GIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLENVFK 234
+YT TRQRLD FT+EEQ LS+V+ I+ +IR+IM QS DG LSA+D++ + +NVF
Sbjct: 1716 -MYTVTRQRLDMFTSEEQDILSDVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFN 1774
Query: 233 YHPDKDVKMGCGIDHVMV 180
YHPDK +KMG GIDH V
Sbjct: 1775 YHPDKAMKMGAGIDHFKV 1792
>ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
[Theobroma cacao] gi|590569189|ref|XP_007011000.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao] gi|508727912|gb|EOY19809.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao] gi|508727913|gb|EOY19810.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao]
Length = 1788
Score = 113 bits (283), Expect = 2e-22
Identities = 65/142 (45%), Positives = 85/142 (59%)
Frame = -1
Query: 599 VGSTEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGGPNNLQGTPDDQSRLN 420
+GST+ E K WG ++ S W S D K P +D S +
Sbjct: 1592 LGSTQSE-----------KQHQWGQSRGSRRWAS----DASKKNHPVKSARVMNDDSSMA 1636
Query: 419 ASGIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLENV 240
A +YTATRQRLD FT+EEQ LS+V+ ++ +IRKIM QS DG PLSA DQ+ +LENV
Sbjct: 1637 A--MYTATRQRLDMFTSEEQDILSDVEPLMQSIRKIMHQSGYNDGDPLSALDQSFILENV 1694
Query: 239 FKYHPDKDVKMGCGIDHVMVCR 174
F +HPDK +KMG G+D+VMV +
Sbjct: 1695 FTHHPDKAIKMGAGVDYVMVSK 1716
>gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus guttatus]
Length = 2113
Score = 113 bits (282), Expect = 3e-22
Identities = 59/116 (50%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Frame = -1
Query: 521 KSSHGWGSSNTGDWKNK--GGPNNLQGTPDDQSRLNASGIYTATRQRLDRFTAEEQSALS 348
+ S G G +N DWKNK GGP DD NA GI+TA+RQRLD FTAEEQ L
Sbjct: 1878 EGSQGRGPTNDRDWKNKRSGGP------VDDP---NAPGIFTASRQRLDSFTAEEQEVLL 1928
Query: 347 EVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLENVFKYHPDKDVKMGCGIDHVMV 180
E +TI+ IR++M Q+ DG PLSA+DQ +++NV +HP+K +K+G G+DH+MV
Sbjct: 1929 ETETIMKNIRRVMHQTGYNDGDPLSADDQKYIVDNVLNHHPEKSLKIGAGLDHIMV 1984
Score = 60.8 bits (146), Expect = 2e-06
Identities = 65/299 (21%), Positives = 108/299 (36%), Gaps = 27/299 (9%)
Frame = -2
Query: 1504 QNSSAPGGWNTKSQPS---------QNDPNDSWGGQAEKANSTGG-WNTNKQPSLKNPNS 1355
Q S GGW K + S N + +WG +K S G W + S +
Sbjct: 1469 QVDSDAGGWGKKPEQSPRGNTARSVDNVNSPAWG---KKVTSEGNEWTKAGEKSTSPEAA 1525
Query: 1354 SAPGGWNTKSQP-----SQNDPNNSWGGLAEKGISTGGWNTKKQPSQDDPNDSWGGQVEK 1190
W K+ ++ D ++WG + + G +G W K D +WG V+K
Sbjct: 1526 QNSSAWGKKAGSDGGDWAKKDEQSTWGNVKKAGFDSGDWAKK------DEQSTWGN-VKK 1578
Query: 1189 ANTPDG-WNTKTQPSQAEPRDSWGGLVEKTNTTGGWNTKMQSSQDEPRGSWGEQVEKANT 1013
A + G W K +PS +WG + + G W K + S +WG V+KA +
Sbjct: 1579 AGSDGGDWAKKDEPS------TWGNAKKAGSDGGDWAKKDEQS------TWGN-VKKAGS 1625
Query: 1012 TAG-WNTKTQPSQVEPDDSWGGLVEXXXXXXXXXXXTRSSQAEARDCWGGLGEKTNTTGG 836
G W K + S +WG + + ++ + + WG + +K + GG
Sbjct: 1626 DGGDWAKKDEQS------TWGNVKKAGSDGGDW------AKKDEQSTWGNV-KKAGSDGG 1672
Query: 835 ----------WNAQKRPQDDPSDSWGGHVEKANTTGQNGKEGNGQWNQWSEPPKNETDH 689
W K Q +WG + +G W+ + ++ H
Sbjct: 1673 DWAKKDEQSTWGNVKASQIQNKSTWGRDAAPTENVSSPKSQEDGLWSSAQKGEQSTWGH 1731
Score = 59.7 bits (143), Expect = 3e-06
Identities = 71/307 (23%), Positives = 114/307 (37%), Gaps = 30/307 (9%)
Frame = -2
Query: 1528 KKQPSQDDQNSSAPGGWNTKSQPSQNDPNDSWGGQAEKANSTGG-WNTNKQPSLKNPNSS 1352
KK S+ ++ + A G +T + +QN + +WG +KA S GG W + S
Sbjct: 1503 KKVTSEGNEWTKA-GEKSTSPEAAQN--SSAWG---KKAGSDGGDWAKKDEQSTWGNVKK 1556
Query: 1351 A---PGGWNTKSQPSQNDPNNSWGGLAEKGISTGGWNTKKQPS----------------Q 1229
A G W K D ++WG + + G G W K +PS +
Sbjct: 1557 AGFDSGDWAKK------DEQSTWGNVKKAGSDGGDWAKKDEPSTWGNAKKAGSDGGDWAK 1610
Query: 1228 DDPNDSWGGQVEKANTPDG-WNTKTQPSQAEPRDSWGGLVEKTNTTGGWNTKMQSSQDEP 1052
D +W G V+KA + G W K + S +WG + + + G W K + S
Sbjct: 1611 KDEQSTW-GNVKKAGSDGGDWAKKDEQS------TWGNVKKAGSDGGDWAKKDEQS---- 1659
Query: 1051 RGSWGEQVEKANTTAG-WNTK--------TQPSQVEPDDSWGGLVEXXXXXXXXXXXTRS 899
+WG V+KA + G W K + SQ++ +WG S
Sbjct: 1660 --TWG-NVKKAGSDGGDWAKKDEQSTWGNVKASQIQNKSTWG-------RDAAPTENVSS 1709
Query: 898 SQAEARDCWGGLGEKTNTTGGWNAQKRPQDDPSDSWGGHVEKANTTGQNGKEGNGQWNQW 719
+++ W + +T W K Q +WGG + +G W+
Sbjct: 1710 PKSQEDGLWSSAQKGEQST--WGHVKTSQTQNKSTWGGDTAPIENVPSPKSQEDGLWSSA 1767
Query: 718 SEPPKNE 698
S K +
Sbjct: 1768 SAAQKEQ 1774
>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
Length = 2054
Score = 111 bits (278), Expect = 8e-22
Identities = 63/154 (40%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Frame = -1
Query: 632 NQWILKFGVLCVGSTEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWK-NKGGPNN 456
N W+ + G G EK W ++ F ++S GWGS ++GDWK K P
Sbjct: 1817 NSWLPRAGD--GGEVEKPNEWVKKSGS----FKKNHGETSGGWGS-DSGDWKIKKNHPGK 1869
Query: 455 LQGTPDDQSRLNASGIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPL 276
+D + + ++T TRQRLD FT+EEQ ALS ++ + +IR+IM +S DG P+
Sbjct: 1870 FPRMNNDNTSVR---LFTETRQRLDLFTSEEQDALSLIEPTMKSIRRIMHKSGYNDGDPI 1926
Query: 275 SAEDQANVLENVFKYHPDKDVKMGCGIDHVMVCR 174
EDQ+ +++NVF YHPDK KMG GIDH+M+ R
Sbjct: 1927 RPEDQSFIIDNVFNYHPDKAAKMGSGIDHLMISR 1960
>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
arietinum]
Length = 2263
Score = 110 bits (275), Expect = 2e-21
Identities = 59/139 (42%), Positives = 79/139 (56%)
Frame = -1
Query: 590 TEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGGPNNLQGTPDDQSRLNASG 411
++K W + K + ++ S GWGS N GDWKNK P G
Sbjct: 2023 SDKNFQWGKPGRESFKKNRFEGSQGSQGWGS-NAGDWKNKNRPARPPGP----------- 2070
Query: 410 IYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLENVFKY 231
RLD +++EEQ L +++ I+ +IR+IM+Q DG PL+AEDQ VLENVF++
Sbjct: 2071 -------RLDLYSSEEQDILKDIEPIVQSIRRIMQQQGYNDGDPLAAEDQQYVLENVFEH 2123
Query: 230 HPDKDVKMGCGIDHVMVCR 174
HPDK+ KMG GIDHVMV R
Sbjct: 2124 HPDKETKMGVGIDHVMVSR 2142
Score = 67.4 bits (163), Expect = 2e-08
Identities = 69/310 (22%), Positives = 106/310 (34%), Gaps = 48/310 (15%)
Frame = -2
Query: 1504 QNSSAPGGWNTKSQPSQNDPNDSWGGQ-------AEKANSTGGWNTNKQPSLKNPNSSAP 1346
++SS PG W + + + P SWG AEKA G + + + +SS
Sbjct: 1569 EDSSKPGAWEANTNKNSDQP--SWGKNKSGIQDGAEKAQWESGSSQKWKAGVVQEDSSKS 1626
Query: 1345 GGWNTKSQPSQNDPNNSWGG--------------------------LAEKGISTGGWNTK 1244
G W + +QN SWG + E +G W
Sbjct: 1627 GSWGANT--NQNSDQPSWGKNKSGIQDGAEKAQWESGSSQKWKAGVVQEDSSKSGSWGAN 1684
Query: 1243 KQPSQDDPNDSWGGQVEKANTPDGWNTKTQPSQAEPRDSWGGLVEKTNTTGGWNTKMQSS 1064
+ D P SWG K+ DG S + + G + E ++ +G W +
Sbjct: 1685 TNQNSDQP--SWG--KNKSGIQDGAEKAQWESGSSQKWKAGVVQEDSSKSGSWGANTNQN 1740
Query: 1063 QDEPRGSWGEQ-------VEKANTTAGWNTKTQPSQVEPDD----SWGGLVEXXXXXXXX 917
D+P SWG+ EKA +G + K + V+ D SWG
Sbjct: 1741 SDQP--SWGKNKSGIQDGAEKAQWESGSSQKWKAGVVQEDSSKSGSWGANTNQNSDQSSW 1798
Query: 916 XXXTRSSQAEA-RDCWGGLGEKTNTTGGWNAQKRPQDDPSDSWGGHVEKANTTGQN---G 749
Q A R W + +G W A +PS W + + +++ N
Sbjct: 1799 GRNKSGEQDGAERSQWA--SGSSQKSGAWEA------NPSQKWNADLVQEDSSRSNNDES 1850
Query: 748 KEGNGQWNQW 719
K +G W W
Sbjct: 1851 KTNSGGWKAW 1860
Score = 63.9 bits (154), Expect = 2e-07
Identities = 70/308 (22%), Positives = 114/308 (37%), Gaps = 44/308 (14%)
Frame = -2
Query: 1504 QNSSAPGGWNTKSQPSQNDPNDSWGGQ-------AEKANSTGGWNTNKQPSLKNPNSSAP 1346
++SS G W + +QN SWG AEKA G + + + +SS
Sbjct: 1725 EDSSKSGSWGANT--NQNSDQPSWGKNKSGIQDGAEKAQWESGSSQKWKAGVVQEDSSKS 1782
Query: 1345 GGWNTKSQPSQNDPNNSWGGL-------AEKGISTGGWNTKKQPSQDDPNDSWGGQV--- 1196
G W + +QN +SWG AE+ G + K + +P+ W +
Sbjct: 1783 GSWGANT--NQNSDQSSWGRNKSGEQDGAERSQWASGSSQKSGAWEANPSQKWNADLVQE 1840
Query: 1195 --------EKANTPDGW----NTKTQPSQAEPR----DSWGGLVEKTNTTGGWNTKMQSS 1064
E GW ++KT+ + E + DSW + W +
Sbjct: 1841 DSSRSNNDESKTNSGGWKAWGSSKTEVHEGESKKVQEDSW--------KSQKWKAGADVT 1892
Query: 1063 QDEPR-GSWGEQVE----KANTTAGWNTKTQP-----SQVEPDDSWGGLVEXXXXXXXXX 914
QD P+ GSWG + K+N + W K S+ +DSW
Sbjct: 1893 QDSPKMGSWGATKDATKPKSNDWSSWGKKKDEIHDGGSEKIQEDSWSS------------ 1940
Query: 913 XXTRSSQAEARDCWGGLGEKTNTTGGWNAQKRPQDDPSDSWGGHVEKANTT-GQNGKEGN 737
+AE++ + E ++ + W + DD DSW V AN++ G+ + N
Sbjct: 1941 ---GKRKAESKSVADVMQEDSSKSNTW---EHKSDDVKDSWDAKVPVANSSWGKPKSQEN 1994
Query: 736 GQWNQWSE 713
W+ +E
Sbjct: 1995 QPWDSKNE 2002
>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
Length = 1902
Score = 109 bits (273), Expect = 3e-21
Identities = 62/165 (37%), Positives = 89/165 (53%), Gaps = 13/165 (7%)
Frame = -1
Query: 635 INQWILKFGVLCVGSTEKEVHWSQRKEPPVKPFAWGTNKSS----HGWGSSNTGDWKNKG 468
++ W + G GS + + W Q P G NK GWGSSNTG+WK++
Sbjct: 1662 VSTWKKESGEKLHGSDDSQSPWGQ-------PGGSGWNKKQPEGGRGWGSSNTGEWKSRK 1714
Query: 467 GPNNLQ---------GTPDDQSRLNASGIYTATRQRLDRFTAEEQSALSEVDTIILAIRK 315
N Q G DD R+ TATR+R+D F EE+ LSEV++++ +IR+
Sbjct: 1715 NQNQNQNQNQNRPPRGPNDDSPRV----ALTATRKRMDEFPTEEKDVLSEVESLMQSIRR 1770
Query: 314 IMRQSRDKDGKPLSAEDQANVLENVFKYHPDKDVKMGCGIDHVMV 180
IM QS DG+PL +DQ +++N+ YHPDK K+G G+D + V
Sbjct: 1771 IMHQSGCVDGEPLLPDDQTYLIDNILNYHPDKAAKIGAGVDFITV 1815
Score = 75.1 bits (183), Expect = 8e-11
Identities = 82/348 (23%), Positives = 130/348 (37%), Gaps = 76/348 (21%)
Frame = -2
Query: 1525 KQPSQDDQNSSAPGGWNT-----KSQP------------------SQNDPNDSWGGQAEK 1415
K+ + ++SS GGW++ K QP +Q DP+ WG +
Sbjct: 1145 KKDQANPEDSSKTGGWSSGGSKQKPQPEDSSKSGGWDASKSWGGSNQGDPSPVWGQPVKA 1204
Query: 1414 ANST-------------GGWNTN--KQPSLKNPNSSAPGGWNTK---SQPSQNDPNNSWG 1289
N GGW + K+ K NSS GGW+ S DP+++WG
Sbjct: 1205 TNDISIENDHGSGSAEGGGWANSGMKKDLSKQENSSTAGGWDASKSWSGSKPKDPSSAWG 1264
Query: 1288 GLAEKGISTGGW---NTKKQPSQDDPND----SWGG-----QVEKANTPDGWNTKTQPSQ 1145
+K GW ++KK + D WG Q E + +GW S+
Sbjct: 1265 A-GKKTDDNNGWKKSDSKKDLASGSVEDGGCSGWGPKKDLLQPEDSAGENGWGASKSKSK 1323
Query: 1144 AEPRDSWGGLVEKTNTTGGW---NTKMQSSQDEPRGSWGEQVEKANTTAGWNTKTQPSQV 974
EP +WG ++T+ GW N + S E W ++++K N + ++ ++QP+
Sbjct: 1324 -EPSSAWGKPAQETDNI-GWKKNNPQRDSENLEGTSGWNDKLQKENKS--FSKQSQPASS 1379
Query: 973 EPDDSWGGLVEXXXXXXXXXXXTR-----SSQAEARDCWGGLGEKTNTTGGWNAQKRPQD 809
+ DS G + + S+ + + WG TGG + +K QD
Sbjct: 1380 KDWDSTGNITAGSTGFGVEKGNEKPWDVASNVSVKKSTWG-------QTGGNSWKKNEQD 1432
Query: 808 ----DP-----------SDSWGGHVEKANTTGQNGKEGNGQWNQWSEP 710
DP SDSW + Q E G + W +P
Sbjct: 1433 EKDGDPQGLPWGKSHKSSDSWTSGQGNQHPVSQGVSEKQGTLSSWGQP 1480
Score = 66.2 bits (160), Expect = 4e-08
Identities = 75/299 (25%), Positives = 106/299 (35%), Gaps = 37/299 (12%)
Frame = -2
Query: 1510 DDQNSSAPGGWNTKSQPSQNDPNDSWGGQAEKAN-----STGGWNTNKQPSLKNP-NSSA 1349
D + SA GGW+ SWG + ++AN TGGW++ P +SS
Sbjct: 1129 DTGSGSAEGGWS------------SWGSKKDQANPEDSSKTGGWSSGGSKQKPQPEDSSK 1176
Query: 1348 PGGWNTKSQ---PSQNDPNNSWGG--LAEKGIST-----------GGW---NTKKQPSQD 1226
GGW+ +Q DP+ WG A IS GGW KK S+
Sbjct: 1177 SGGWDASKSWGGSNQGDPSPVWGQPVKATNDISIENDHGSGSAEGGGWANSGMKKDLSKQ 1236
Query: 1225 DPNDSWGGQVEKANTPDGWNTKTQPSQAEPRD---SWGGLVEKTNTTGGWNTKMQSSQDE 1055
E ++T GW+ S ++P+D +WG +KT+ GW K S +D
Sbjct: 1237 ----------ENSSTAGGWDASKSWSGSKPKDPSSAWGA-GKKTDDNNGWK-KSDSKKDL 1284
Query: 1054 PRGSWGEQVEKANTTAGWNTKTQPSQVEPDDSWGGLVEXXXXXXXXXXXTRSSQAEARDC 875
GS VE + GW K ++P+DS G
Sbjct: 1285 ASGS----VEDGGCS-GWGPKKD--LLQPEDSAG-------------------------- 1311
Query: 874 WGGLGEKTNTTGGWNAQKRPQDDPSDSWGGHVEKANTTG---------QNGKEGNGQWN 725
GW A K +PS +WG ++ + G EG WN
Sbjct: 1312 ----------ENGWGASKSKSKEPSSAWGKPAQETDNIGWKKNNPQRDSENLEGTSGWN 1360
>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1991
Score = 108 bits (269), Expect = 8e-21
Identities = 64/144 (44%), Positives = 83/144 (57%), Gaps = 11/144 (7%)
Frame = -1
Query: 572 WSQRKEPPVKPFA-WGTNKSSH---------GWGSSNTGDWKNKGG-PNNLQGTPDDQSR 426
W + E V+ WG N S+ WG N G+WK K P G +D S
Sbjct: 1780 WDSQSEAAVERHQQWGHNGDSNKRKRFEGGRSWGP-NAGEWKGKNSRPAKSPGMVNDDSS 1838
Query: 425 LNASGIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLE 246
+ A IYTATRQRLD FT+EEQ LS ++ +L+IR+IM QS DG LSAED + +L+
Sbjct: 1839 VAA--IYTATRQRLDIFTSEEQDVLSHIEPTMLSIRRIMHQSGYNDGDQLSAEDHSFILD 1896
Query: 245 NVFKYHPDKDVKMGCGIDHVMVCR 174
VF +HP+K+ KMG GID+ V R
Sbjct: 1897 KVFNFHPEKEAKMGSGIDYFTVDR 1920
Score = 78.2 bits (191), Expect = 9e-12
Identities = 61/285 (21%), Positives = 98/285 (34%), Gaps = 34/285 (11%)
Frame = -2
Query: 1468 SQPSQNDPNDSWGGQAEKANSTGGWNTNKQPSLKNPNSSAPGGWNTKSQPSQNDPNNSWG 1289
S +Q D +WG + + + T W T K AP W TK+ + D ++WG
Sbjct: 1347 SAETQADSTSAWGIKTPREDDTSPWGT-----AKTATEDAPSAWGTKT--VKEDAPSAWG 1399
Query: 1288 GLAEKGISTGGWNTKKQPSQD----------------------DPNDSWGGQVEKANTPD 1175
+ + W T K ++D D +WG + K + P
Sbjct: 1400 IKTAREDARSPWGTAKTATEDASSATAREDAPSPWGTAKTATGDALSAWGTKTLKEDAPS 1459
Query: 1174 GWNTKTQPSQA------------EPRDSWGGLVEKTNTTGGWNTKMQSSQDEPRGSWGEQ 1031
W TKT A + +WG + W T +++D P +WG +
Sbjct: 1460 AWGTKTVREDAPSPWGTAKRATEDAPAAWGAKSATEDAPPPWGTAKTAAEDAP-SAWGVK 1518
Query: 1030 VEKANTTAGWNTKTQPSQVEPDDSWGGLVEXXXXXXXXXXXTRSSQAEARDCWGGLGEKT 851
K + ++ W TKT + + +WG E ++ +A W G
Sbjct: 1519 AVKKDASSPWETKT--ATEDATTAWGRNNEKKHVLTAEVLEDSKAREDATSGW-GTENAE 1575
Query: 850 NTTGGWNAQKRPQDDPSDSWGGHVEKANTTGQNGKEGNGQWNQWS 716
N W ++ S G VE + Q E WN +S
Sbjct: 1576 NAQSTWRTSTESENGWSGRGGSKVESTDVQSQKAVENPKGWNDFS 1620
Score = 62.0 bits (149), Expect = 7e-07
Identities = 73/334 (21%), Positives = 120/334 (35%), Gaps = 68/334 (20%)
Frame = -2
Query: 1492 APGGWNTKSQPSQNDPNDSWGGQAEKANSTGGWNTNKQPS--------LKNPNSSAPGGW 1337
A W TK+ + D +WG + + ++ W T K+ + K+ AP W
Sbjct: 1444 ALSAWGTKTL--KEDAPSAWGTKTVREDAPSPWGTAKRATEDAPAAWGAKSATEDAPPPW 1501
Query: 1336 NTKSQPSQNDPNNSWGGLAEKGISTGGWNTKKQPSQDDPNDSWGGQVEKANT-------- 1181
T +++ P+ +WG A K ++ W TK + +D +WG EK +
Sbjct: 1502 GTAKTAAEDAPS-AWGVKAVKKDASSPWETKT--ATEDATTAWGRNNEKKHVLTAEVLED 1558
Query: 1180 -------PDGWNTK-------TQPSQAEPRDSWGGL----VEKTNTTG--------GWN- 1082
GW T+ T + E + W G VE T+ GWN
Sbjct: 1559 SKAREDATSGWGTENAENAQSTWRTSTESENGWSGRGGSKVESTDVQSQKAVENPKGWND 1618
Query: 1081 --TKMQSSQDEPRGS-WG----------EQVEKANTTAGWNTKTQPS--------QVEPD 965
++ Q E GS WG E + +T W K+ + Q PD
Sbjct: 1619 FSAGVRKPQTENAGSGWGMKGSEKKGDIELEQDESTRHSWKQKSADASSQGAWERQKSPD 1678
Query: 964 DSWGGLVEXXXXXXXXXXXTRSSQAEARDCWGGLGE--KTNTTGGWNAQKRPQDDPSDSW 791
S G + + + GL + TN+ G W QK P + P +W
Sbjct: 1679 TSKGTWEQPKSAEMSHGAWGQQKSPDVSQGVWGLEKPASTNSQGSWGQQKSP-EIPQGNW 1737
Query: 790 GGHVEKANTTGQNGKEGNGQWNQ--WSEPPKNET 695
G + G G++ + + +Q W + ++T
Sbjct: 1738 GQQTSPDISQGTWGQQKSPEMSQGSWGQQKPSDT 1771
>ref|XP_007219786.1| hypothetical protein PRUPE_ppa024567mg [Prunus persica]
gi|462416248|gb|EMJ20985.1| hypothetical protein
PRUPE_ppa024567mg [Prunus persica]
Length = 792
Score = 79.3 bits (194), Expect(2) = 8e-20
Identities = 47/126 (37%), Positives = 71/126 (56%)
Frame = -1
Query: 593 STEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGGPNNLQGTPDDQSRLNAS 414
S E+ W Q + K + + + W SS G+WKNK P G +D S + A
Sbjct: 609 SGERNHQWGQHRGDQTKKSRF---EGARNWVSS-PGEWKNKNRPPKSPGMVNDNSTMGA- 663
Query: 413 GIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLENVFK 234
+YT TR RLD FT+EE LS ++ ++ ++R+IM QS DG PLS +D++ VL+NV +
Sbjct: 664 -LYTVTRPRLDMFTSEEH-VLSNIEPVMRSLRRIMHQSGYNDGDPLSGDDESFVLDNVNR 721
Query: 233 YHPDKD 216
+ +D
Sbjct: 722 HGSFQD 727
Score = 46.2 bits (108), Expect(2) = 8e-20
Identities = 49/236 (20%), Positives = 80/236 (33%), Gaps = 19/236 (8%)
Frame = -2
Query: 1360 NSSAPGGWNTKSQPSQNDPNNSWGGLAEKGISTGGWNTKKQPSQDDPNDSWGGQVEKAN- 1184
N+S+ NT ++ D ++WG K +T W T S++D W GQ + A+
Sbjct: 405 NTSSAWATNT----AREDAASAWGTNPAKENTTSTWGTTTA-SENDWCGRWVGQDDSASL 459
Query: 1183 ---------TPDGWNTKTQPSQAEPRDSWGGLVEKTNTTGGWNTKMQSSQD--------- 1058
T W T T ++ + + G K N T W T + S D
Sbjct: 460 SVKKSSVLDTSSAWATNT--AREDAASACGKQPAKENATSTWGTTLASENDWCGRGVGHD 517
Query: 1057 EPRGSWGEQVEKANTTAGWNTKTQPSQVEPDDSWGGLVEXXXXXXXXXXXTRSSQAEARD 878
+ G++ NT++ W T T ++ +A
Sbjct: 518 DSASLSGKKSSVLNTSSVWATNT------------------------------AREDATS 547
Query: 877 CWGGLGEKTNTTGGWNAQKRPQDDPSDSWGGHVEKANTTGQNGKEGNGQWNQWSEP 710
WG K NTT W ++D G VE + ++ + + W P
Sbjct: 548 AWGENPAKENTTSTWGTTTASENDWCGREAGKVEPVDFQPTKPQDDSASLSGWDSP 603
>ref|XP_007133762.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
gi|561006762|gb|ESW05756.1| hypothetical protein
PHAVU_011G206900g [Phaseolus vulgaris]
Length = 2052
Score = 103 bits (257), Expect = 2e-19
Identities = 60/144 (41%), Positives = 78/144 (54%), Gaps = 10/144 (6%)
Frame = -1
Query: 581 EVHWSQRKEPPVKPFAWGTN----------KSSHGWGSSNTGDWKNKGGPNNLQGTPDDQ 432
E H + K F WG + S G GS N+GDWKN+ P G
Sbjct: 1835 ESHIASANSDSEKGFQWGKQGRESFKKNRFEGSQGRGS-NSGDWKNRNRPPRTPG----- 1888
Query: 431 SRLNASGIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANV 252
QRLD +++EEQ L E++ I+ +IR+IM+Q DG PL+A+DQ V
Sbjct: 1889 -------------QRLDLYSSEEQDVLKEIEPIMQSIRRIMQQQGYNDGDPLAADDQLFV 1935
Query: 251 LENVFKYHPDKDVKMGCGIDHVMV 180
LENVF++HPDKD KMG GID+VMV
Sbjct: 1936 LENVFEHHPDKDTKMGAGIDYVMV 1959
Score = 67.0 bits (162), Expect = 2e-08
Identities = 77/355 (21%), Positives = 114/355 (32%), Gaps = 62/355 (17%)
Frame = -2
Query: 1504 QNSSAPGGWNTKSQPSQNDPNDSWGGQAEKANS---------TGGWNTNKQPSLKNPNSS 1352
++SS WNT + N ++ W K + G W + K + ++
Sbjct: 1352 EDSSKSSAWNTNTTGHTNTKSNEWSAWGSKKSEIQAGGSEKVEGSWGSGKTKDVTQKDNF 1411
Query: 1351 APGGW--------NTKSQPSQNDPNN--------------SWGG------LAEKGISTGG 1256
G W TKS + NN SWG E +++G
Sbjct: 1412 GSGAWGANKTDQAKTKSNEWSSWGNNNSEILAGGSENMQDSWGSGGRKDVTQEGNVTSGA 1471
Query: 1255 WNTKKQPSQDDPNDSWGGQVEKANTPDGWNTKTQPSQAEPRDSW-GGLVEKTNTTGGWNT 1079
W ++ N+ G K+ P G + Q S D W G+ + N+ GW
Sbjct: 1472 WGANVDQTKTQSNEWSGWGKNKSEIPAGGSENVQGSWGS--DKWKDGVTQVDNSASGWGG 1529
Query: 1078 KMQSSQDEPRGSW-GEQVEKANTTAGWNTKTQPSQVEPDDSWGGLVEXXXXXXXXXXXTR 902
+ W G KA AG + Q +DSWG
Sbjct: 1530 NRRDQTKAKSNEWSGRGSNKAEIPAGASENVQ------EDSWGS--------GKLGDDVT 1575
Query: 901 SSQAEARDCWGG-----LGEKTNTTGGWNAQK------RPQDDPSDSWGGHVEKANTTGQ 755
WGG K+N GW K ++ DSWG K + T Q
Sbjct: 1576 EKDNSGSGAWGGNRRDQTKTKSNEWSGWGRNKLEIPAGGSENVQEDSWGSGKLKDDVT-Q 1634
Query: 754 NGKEGNGQW------------NQWSEPPKNETDH**QISRYMGD*YGW*TRKSTS 626
N G+ W N+WS KN+++ S + D +G TRK +
Sbjct: 1635 NDNSGSDAWGANSTGQTKSKSNEWSGRGKNKSEIPAGGSENVQDSWGSGTRKDVT 1689