BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver25_contig00018161
         (2191 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI27412.3| unnamed protein product [Vitis vinifera]             1039   0.0  
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...  1039   0.0  
ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theob...  1038   0.0  
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1026   0.0  
emb|CAC95022.1| mitochondrial RNA polymerase [Nicotiana tabacum]     1026   0.0  
ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [S...  1025   0.0  
ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, m...  1024   0.0  
ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/m...  1024   0.0  
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]        1024   0.0  
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...  1023   0.0  
ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun...  1022   0.0  
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g...  1021   0.0  
gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japo...  1021   0.0  
ref|XP_002315996.2| DNA-directed RNA polymerase family protein [...  1021   0.0  
ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Popu...  1019   0.0  
ref|XP_006844103.1| hypothetical protein AMTR_s00006p00254180 [A...  1018   0.0  
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi...  1016   0.0  
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]  1014   0.0  
dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymer...  1014   0.0  
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras...  1014   0.0  

>emb|CBI27412.3| unnamed protein product [Vitis vinifera]
          Length = 810

 Score = 1039 bits (2686), Expect = 0.0
 Identities = 493/639 (77%), Positives = 563/639 (88%)
 Frame = +1

Query: 1    SAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHM 180
            +AYIQPP DQL DGPPDIRPAF H++KT+  ++   +R++GVIECDPL+ +GLEKTA+HM
Sbjct: 175  TAYIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHM 234

Query: 181  VIPYMPMLVPPENWIRYDKGAHLFLPSYVMRTHGSKQQRLEVKNTPVKQIQRVFDALNTL 360
            VIPYMPMLVPP NW  YDKGA+LFLPSYVMR HG++QQR  +K  P K ++  F+ALNTL
Sbjct: 235  VIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTL 294

Query: 361  GNTKWRVNKKLLEIVDRVWASGGKYAGLVDLADVVLPEKPETEDEAELRNWKWKIKNAKK 540
            GNTKWR+NK++L ++DR+WASGG+ A LVD  DV LPE+P+TEDEAE+R WKWK+++ KK
Sbjct: 295  GNTKWRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKK 354

Query: 541  ENNERHAHRCDLELKLAVAHKMSAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 720
            EN+ERH+ RCD+ELKLAVA KM  EDGF+YPHNLDFRGRAYPMHPYLNHLGSDLCRGILE
Sbjct: 355  ENSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 414

Query: 721  FAEGHPLGNSGLRWLKIHLANLFATGGVDKKSYEGRIAFTESNLDNIFDSADKPLEGNQW 900
            FAEG PLG SGLRWLKIHLAN++A GGVDK SYEGR+AFTE++L++IFDSAD+PLEG +W
Sbjct: 415  FAEGRPLGKSGLRWLKIHLANVYA-GGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRW 473

Query: 901  WLGAEDPFQCLAVCMNLSEALRSSSPETTISHIPIHQDGSCNGLQHYAALGRDKLGAAAV 1080
            WL AEDPFQCLA C+NLSEALRSSSPETTISH+P+HQDGSCNGLQHYAALGRDKLGAAAV
Sbjct: 474  WLSAEDPFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAV 533

Query: 1081 NLVAGEKPADVYSGIADRVREIMQEDSQKDPAADPNVFRAKMLIEKDWVNRKLVKQTVMT 1260
            NLVAGEKPADVYSGIA RV +IMQ D+QKDPA +PN  RA++LI +  V+RKLVKQTVMT
Sbjct: 534  NLVAGEKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQ--VDRKLVKQTVMT 591

Query: 1261 SVYGVTYAGARDQINRRLREQDPATDNKEQFTLACYAAKVTLTALEEMFEAARRIMKWLS 1440
            SVYGVTY GARDQI RRL+E+    D  E F+ +CYAAK TLTAL EMFEAAR IM WL 
Sbjct: 592  SVYGVTYIGARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLG 651

Query: 1441 DCAKVIASENHPVQWITPLGLPIVQPYRRLRRHNINTSLQVLTLQRETDKVMIKRQRTAF 1620
            DCAKVIASENHPV+W TPLGLP+VQPYR+L RH I TSLQVL+LQRETDKVM+KRQRTAF
Sbjct: 652  DCAKVIASENHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAF 711

Query: 1621 PPNFVHSLDGSHMMMTALACKKAGLNFAGVHDSFWTHACDVDEMNRILREKFVELYEQPI 1800
            PPNFVHSLDGSHMMMTA+AC+KAGLNFAGVHDS+WTHACDVDEMNRILREKFVELY  PI
Sbjct: 712  PPNFVHSLDGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPI 771

Query: 1801 LENLLENFQGSFPKLEFPSLPVRGDFNLKEVLQSPYFFN 1917
            LENLLE FQ SFP L FP LP RGDF+L+EVL+SPYFFN
Sbjct: 772  LENLLEGFQKSFPTLNFPPLPERGDFDLREVLESPYFFN 810


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score = 1039 bits (2686), Expect = 0.0
 Identities = 493/639 (77%), Positives = 563/639 (88%)
 Frame = +1

Query: 1    SAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHM 180
            +AYIQPP DQL DGPPDIRPAF H++KT+  ++   +R++GVIECDPL+ +GLEKTA+HM
Sbjct: 343  TAYIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHM 402

Query: 181  VIPYMPMLVPPENWIRYDKGAHLFLPSYVMRTHGSKQQRLEVKNTPVKQIQRVFDALNTL 360
            VIPYMPMLVPP NW  YDKGA+LFLPSYVMR HG++QQR  +K  P K ++  F+ALNTL
Sbjct: 403  VIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTL 462

Query: 361  GNTKWRVNKKLLEIVDRVWASGGKYAGLVDLADVVLPEKPETEDEAELRNWKWKIKNAKK 540
            GNTKWR+NK++L ++DR+WASGG+ A LVD  DV LPE+P+TEDEAE+R WKWK+++ KK
Sbjct: 463  GNTKWRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKK 522

Query: 541  ENNERHAHRCDLELKLAVAHKMSAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 720
            EN+ERH+ RCD+ELKLAVA KM  EDGF+YPHNLDFRGRAYPMHPYLNHLGSDLCRGILE
Sbjct: 523  ENSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 582

Query: 721  FAEGHPLGNSGLRWLKIHLANLFATGGVDKKSYEGRIAFTESNLDNIFDSADKPLEGNQW 900
            FAEG PLG SGLRWLKIHLAN++A GGVDK SYEGR+AFTE++L++IFDSAD+PLEG +W
Sbjct: 583  FAEGRPLGKSGLRWLKIHLANVYA-GGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRW 641

Query: 901  WLGAEDPFQCLAVCMNLSEALRSSSPETTISHIPIHQDGSCNGLQHYAALGRDKLGAAAV 1080
            WL AEDPFQCLA C+NLSEALRSSSPETTISH+P+HQDGSCNGLQHYAALGRDKLGAAAV
Sbjct: 642  WLSAEDPFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAV 701

Query: 1081 NLVAGEKPADVYSGIADRVREIMQEDSQKDPAADPNVFRAKMLIEKDWVNRKLVKQTVMT 1260
            NLVAGEKPADVYSGIA RV +IMQ D+QKDPA +PN  RA++LI +  V+RKLVKQTVMT
Sbjct: 702  NLVAGEKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQ--VDRKLVKQTVMT 759

Query: 1261 SVYGVTYAGARDQINRRLREQDPATDNKEQFTLACYAAKVTLTALEEMFEAARRIMKWLS 1440
            SVYGVTY GARDQI RRL+E+    D  E F+ +CYAAK TLTAL EMFEAAR IM WL 
Sbjct: 760  SVYGVTYIGARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLG 819

Query: 1441 DCAKVIASENHPVQWITPLGLPIVQPYRRLRRHNINTSLQVLTLQRETDKVMIKRQRTAF 1620
            DCAKVIASENHPV+W TPLGLP+VQPYR+L RH I TSLQVL+LQRETDKVM+KRQRTAF
Sbjct: 820  DCAKVIASENHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAF 879

Query: 1621 PPNFVHSLDGSHMMMTALACKKAGLNFAGVHDSFWTHACDVDEMNRILREKFVELYEQPI 1800
            PPNFVHSLDGSHMMMTA+AC+KAGLNFAGVHDS+WTHACDVDEMNRILREKFVELY  PI
Sbjct: 880  PPNFVHSLDGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPI 939

Query: 1801 LENLLENFQGSFPKLEFPSLPVRGDFNLKEVLQSPYFFN 1917
            LENLLE FQ SFP L FP LP RGDF+L+EVL+SPYFFN
Sbjct: 940  LENLLEGFQKSFPTLNFPPLPERGDFDLREVLESPYFFN 978


>ref|XP_007045721.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|590698457|ref|XP_007045722.1| DNA-directed RNA
            polymerase isoform 1 [Theobroma cacao]
            gi|508709656|gb|EOY01553.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao] gi|508709657|gb|EOY01554.1|
            DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 996

 Score = 1038 bits (2683), Expect = 0.0
 Identities = 496/639 (77%), Positives = 565/639 (88%)
 Frame = +1

Query: 1    SAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHM 180
            +AYIQPPVDQL D PPDIRPAF HS+KTI  D    SR++GVIECD L+ +GLEKTA+HM
Sbjct: 361  NAYIQPPVDQLGDCPPDIRPAFVHSLKTITKDGNKGSRRYGVIECDLLVRKGLEKTARHM 420

Query: 181  VIPYMPMLVPPENWIRYDKGAHLFLPSYVMRTHGSKQQRLEVKNTPVKQIQRVFDALNTL 360
            VIPYMPMLVPP+NW  YD+GA+LFLPSYVMRTHG+KQQR  VK TP KQ++ +F+AL+TL
Sbjct: 421  VIPYMPMLVPPQNWTGYDRGAYLFLPSYVMRTHGAKQQRETVKRTPRKQLEPIFEALDTL 480

Query: 361  GNTKWRVNKKLLEIVDRVWASGGKYAGLVDLADVVLPEKPETEDEAELRNWKWKIKNAKK 540
            GNTKWR+NK++L +VDR+WA+GG+ A LVD  DV LPEKP+TEDEAE++ WKWK+K A K
Sbjct: 481  GNTKWRINKRVLGVVDRLWANGGRVASLVDREDVPLPEKPDTEDEAEIQKWKWKVKAANK 540

Query: 541  ENNERHAHRCDLELKLAVAHKMSAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 720
            +NNERH+ RCD+ELKLAVA KM  EDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LE
Sbjct: 541  QNNERHSLRCDVELKLAVARKMRDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLE 600

Query: 721  FAEGHPLGNSGLRWLKIHLANLFATGGVDKKSYEGRIAFTESNLDNIFDSADKPLEGNQW 900
            FAEG PLG SGLRWLKIHLANL+A GGVDK SYEGRIAFTE++LD+IFDSAD+PLEG +W
Sbjct: 601  FAEGRPLGKSGLRWLKIHLANLYA-GGVDKLSYEGRIAFTENHLDDIFDSADRPLEGRRW 659

Query: 901  WLGAEDPFQCLAVCMNLSEALRSSSPETTISHIPIHQDGSCNGLQHYAALGRDKLGAAAV 1080
            WL AEDPFQCLA C+NLSEALRSSSPETTISH+P+HQDGSCNGLQHYAALGRDKLGAA+V
Sbjct: 660  WLSAEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAASV 719

Query: 1081 NLVAGEKPADVYSGIADRVREIMQEDSQKDPAADPNVFRAKMLIEKDWVNRKLVKQTVMT 1260
            NLVAGEKPADVYSGIA RV +IM+ D++KDPA +P+   A++LI +  V+RKLVKQTVMT
Sbjct: 720  NLVAGEKPADVYSGIAARVVDIMRRDAEKDPAINPHALHARLLINQ--VDRKLVKQTVMT 777

Query: 1261 SVYGVTYAGARDQINRRLREQDPATDNKEQFTLACYAAKVTLTALEEMFEAARRIMKWLS 1440
            SVYGVTY GARDQI RRL+E+    D+ E F  +CYAA+ TLTAL EMF+AAR IM WL 
Sbjct: 778  SVYGVTYIGARDQIKRRLKERCAIADDTEMFVASCYAARTTLTALGEMFQAARSIMNWLG 837

Query: 1441 DCAKVIASENHPVQWITPLGLPIVQPYRRLRRHNINTSLQVLTLQRETDKVMIKRQRTAF 1620
            +CAKVI+SEN PV+W+TPLGLP+VQPYR+L RH I TSLQVLTLQRETDKVM KRQRTAF
Sbjct: 838  ECAKVISSENQPVRWVTPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMAKRQRTAF 897

Query: 1621 PPNFVHSLDGSHMMMTALACKKAGLNFAGVHDSFWTHACDVDEMNRILREKFVELYEQPI 1800
            PPNFVHSLDGSHMMMTA+ACKKAGLNFAGVHDS+WTHACDVDEMNRILREKFVELYE PI
Sbjct: 898  PPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYEAPI 957

Query: 1801 LENLLENFQGSFPKLEFPSLPVRGDFNLKEVLQSPYFFN 1917
            LENLLE+FQ SFP L FP LP RGDF+L+EVL+SPYFFN
Sbjct: 958  LENLLESFQKSFPSLNFPPLPERGDFDLREVLESPYFFN 996


>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
            Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 1B; Flags: Precursor
          Length = 1002

 Score = 1026 bits (2653), Expect = 0.0
 Identities = 485/639 (75%), Positives = 564/639 (88%)
 Frame = +1

Query: 1    SAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHM 180
            +AYIQPP DQL DGPPDIRPAF H++KT+  +++  SR++GVI+CDPL+ +GL+KTA+HM
Sbjct: 369  TAYIQPPNDQLDDGPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHM 426

Query: 181  VIPYMPMLVPPENWIRYDKGAHLFLPSYVMRTHGSKQQRLEVKNTPVKQIQRVFDALNTL 360
            VIPYMPMLVPP++W+ YDKG +LFLPSY+MRTHG+KQQR  VK  P KQ++ VF AL+TL
Sbjct: 427  VIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTL 486

Query: 361  GNTKWRVNKKLLEIVDRVWASGGKYAGLVDLADVVLPEKPETEDEAELRNWKWKIKNAKK 540
            GNTKWRVN+K+L IVDR+WASGG+ A LVD  DV LPE P+TEDEAE+R WKWK+K  KK
Sbjct: 487  GNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVKGVKK 546

Query: 541  ENNERHAHRCDLELKLAVAHKMSAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 720
            EN ERH+ RCD+ELKLAVA KM  EDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE
Sbjct: 547  ENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 606

Query: 721  FAEGHPLGNSGLRWLKIHLANLFATGGVDKKSYEGRIAFTESNLDNIFDSADKPLEGNQW 900
            FAEG PLG SGLRWLKIHLAN++  GGVDK SYEGR+AF+E++L++IFDSA++PLEG +W
Sbjct: 607  FAEGRPLGTSGLRWLKIHLANVYG-GGVDKLSYEGRVAFSENHLEDIFDSAERPLEGKRW 665

Query: 901  WLGAEDPFQCLAVCMNLSEALRSSSPETTISHIPIHQDGSCNGLQHYAALGRDKLGAAAV 1080
            WLGAEDPFQCLA C+N++EALRS SPET IS++PIHQDGSCNGLQHYAALGRDKLGAAAV
Sbjct: 666  WLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDKLGAAAV 725

Query: 1081 NLVAGEKPADVYSGIADRVREIMQEDSQKDPAADPNVFRAKMLIEKDWVNRKLVKQTVMT 1260
            NLVAG+KPADVYSGIA RV +IM+ D+ KDPA DPNV RA++LI +  V+RKLVKQTVMT
Sbjct: 726  NLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQ--VDRKLVKQTVMT 783

Query: 1261 SVYGVTYAGARDQINRRLREQDPATDNKEQFTLACYAAKVTLTALEEMFEAARRIMKWLS 1440
            SVYGVTY GARDQI +RL+E+    D+ E F  ACYAAK TLTAL EMFEAAR IM WL 
Sbjct: 784  SVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLG 843

Query: 1441 DCAKVIASENHPVQWITPLGLPIVQPYRRLRRHNINTSLQVLTLQRETDKVMIKRQRTAF 1620
            DCAK+IA ENHPV+W TPLGLP+VQPYR+L RH I TSLQ+LTLQRETDKVM+KRQRTAF
Sbjct: 844  DCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAF 903

Query: 1621 PPNFVHSLDGSHMMMTALACKKAGLNFAGVHDSFWTHACDVDEMNRILREKFVELYEQPI 1800
            PPNFVHSLDGSHMMMTA+ACK++GL+FAGVHDS+WTHACDVD+MN+ILREKFVELY+ PI
Sbjct: 904  PPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILREKFVELYDAPI 963

Query: 1801 LENLLENFQGSFPKLEFPSLPVRGDFNLKEVLQSPYFFN 1917
            LENLLE+FQ SFP L+FP LP RGDF+L+EVL+SPYFFN
Sbjct: 964  LENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002


>emb|CAC95022.1| mitochondrial RNA polymerase [Nicotiana tabacum]
          Length = 715

 Score = 1026 bits (2653), Expect = 0.0
 Identities = 485/639 (75%), Positives = 564/639 (88%)
 Frame = +1

Query: 1    SAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHM 180
            +AYIQPP DQL DGPPDIRPAF H++KT+  +++  SR++GVI+CDPL+ +GL+KTA+HM
Sbjct: 82   TAYIQPPNDQLDDGPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHM 139

Query: 181  VIPYMPMLVPPENWIRYDKGAHLFLPSYVMRTHGSKQQRLEVKNTPVKQIQRVFDALNTL 360
            VIPYMPMLVPP++W+ YDKG +LFLPSY+MRTHG+KQQR  VK  P KQ++ VF AL+TL
Sbjct: 140  VIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTL 199

Query: 361  GNTKWRVNKKLLEIVDRVWASGGKYAGLVDLADVVLPEKPETEDEAELRNWKWKIKNAKK 540
            GNTKWRVN+K+L IVDR+WASGG+ A LVD  DV LPE P+TEDEAE+R WKWK+K  KK
Sbjct: 200  GNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVKGVKK 259

Query: 541  ENNERHAHRCDLELKLAVAHKMSAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 720
            EN ERH+ RCD+ELKLAVA KM  EDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE
Sbjct: 260  ENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 319

Query: 721  FAEGHPLGNSGLRWLKIHLANLFATGGVDKKSYEGRIAFTESNLDNIFDSADKPLEGNQW 900
            FAEG PLG SGLRWLKIHLAN++  GGVDK SYEGR+AF+E++L++IFDSA++PLEG +W
Sbjct: 320  FAEGRPLGTSGLRWLKIHLANVYG-GGVDKLSYEGRVAFSENHLEDIFDSAERPLEGKRW 378

Query: 901  WLGAEDPFQCLAVCMNLSEALRSSSPETTISHIPIHQDGSCNGLQHYAALGRDKLGAAAV 1080
            WLGAEDPFQCLA C+N++EALRS SPET IS++PIHQDGSCNGLQHYAALGRDKLGAAAV
Sbjct: 379  WLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDKLGAAAV 438

Query: 1081 NLVAGEKPADVYSGIADRVREIMQEDSQKDPAADPNVFRAKMLIEKDWVNRKLVKQTVMT 1260
            NLVAG+KPADVYSGIA RV +IM+ D+ KDPA DPNV RA++LI +  V+RKLVKQTVMT
Sbjct: 439  NLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQ--VDRKLVKQTVMT 496

Query: 1261 SVYGVTYAGARDQINRRLREQDPATDNKEQFTLACYAAKVTLTALEEMFEAARRIMKWLS 1440
            SVYGVTY GARDQI +RL+E+    D+ E F  ACYAAK TLTAL EMFEAAR IM WL 
Sbjct: 497  SVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLG 556

Query: 1441 DCAKVIASENHPVQWITPLGLPIVQPYRRLRRHNINTSLQVLTLQRETDKVMIKRQRTAF 1620
            DCAK+IA ENHPV+W TPLGLP+VQPYR+L RH I TSLQ+LTLQRETDKVM+KRQRTAF
Sbjct: 557  DCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAF 616

Query: 1621 PPNFVHSLDGSHMMMTALACKKAGLNFAGVHDSFWTHACDVDEMNRILREKFVELYEQPI 1800
            PPNFVHSLDGSHMMMTA+ACK++GL+FAGVHDS+WTHACDVD+MN+ILREKFVELY+ PI
Sbjct: 617  PPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILREKFVELYDAPI 676

Query: 1801 LENLLENFQGSFPKLEFPSLPVRGDFNLKEVLQSPYFFN 1917
            LENLLE+FQ SFP L+FP LP RGDF+L+EVL+SPYFFN
Sbjct: 677  LENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 715


>ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
            gi|241924412|gb|EER97556.1| hypothetical protein
            SORBIDRAFT_02g039520 [Sorghum bicolor]
          Length = 976

 Score = 1025 bits (2649), Expect = 0.0
 Identities = 487/639 (76%), Positives = 560/639 (87%)
 Frame = +1

Query: 1    SAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHM 180
            +A+IQPP  Q SDG PDIRPAF+H M+T+  +    SR++GVI+CDPL+ QGL++TAKHM
Sbjct: 341  TAHIQPPASQSSDGLPDIRPAFRHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLDRTAKHM 400

Query: 181  VIPYMPMLVPPENWIRYDKGAHLFLPSYVMRTHGSKQQRLEVKNTPVKQIQRVFDALNTL 360
            VIPYMPML+PP  W  YDKGAHLFLPSYVMRTHG++QQR  VK  P +Q+Q VF+ALNTL
Sbjct: 401  VIPYMPMLIPPICWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVFEALNTL 460

Query: 361  GNTKWRVNKKLLEIVDRVWASGGKYAGLVDLADVVLPEKPETEDEAELRNWKWKIKNAKK 540
            G+TKWRVNK++L IVDR+W+SGG+ A LVD  DV LPEKP+TEDE  ++NWKW +++ KK
Sbjct: 461  GSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVPLPEKPDTEDETLIKNWKWHLRSVKK 520

Query: 541  ENNERHAHRCDLELKLAVAHKMSAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 720
            EN+ERH+ RCD+ELKLAVA KM  E+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE
Sbjct: 521  ENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 580

Query: 721  FAEGHPLGNSGLRWLKIHLANLFATGGVDKKSYEGRIAFTESNLDNIFDSADKPLEGNQW 900
            FAEG PLG SGL WLKIHLANL+A GGVDK SY+GR+AFTE++L+ IFDSAD+PLEG +W
Sbjct: 581  FAEGRPLGKSGLHWLKIHLANLYA-GGVDKLSYDGRVAFTENHLEEIFDSADRPLEGKRW 639

Query: 901  WLGAEDPFQCLAVCMNLSEALRSSSPETTISHIPIHQDGSCNGLQHYAALGRDKLGAAAV 1080
            WLGAEDPFQCLAVCMNL+EALRSSSPETTISHIP+HQDGSCNGLQHYAALGRDKLGA AV
Sbjct: 640  WLGAEDPFQCLAVCMNLTEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDKLGAIAV 699

Query: 1081 NLVAGEKPADVYSGIADRVREIMQEDSQKDPAADPNVFRAKMLIEKDWVNRKLVKQTVMT 1260
            NLVAGEKPADVY+GIA RV EIM+ D+QKDP+ DP+V RA++++  D V+RKLVKQTVMT
Sbjct: 700  NLVAGEKPADVYTGIATRVLEIMRMDAQKDPSIDPDVARARLIV--DQVDRKLVKQTVMT 757

Query: 1261 SVYGVTYAGARDQINRRLREQDPATDNKEQFTLACYAAKVTLTALEEMFEAARRIMKWLS 1440
            SVYGVTY GARDQI RRL+E+    D  E F  +CYAAKVTLTAL EMF+AAR IM WL 
Sbjct: 758  SVYGVTYVGARDQIKRRLKERGVIPDEAELFGASCYAAKVTLTALGEMFQAARGIMNWLG 817

Query: 1441 DCAKVIASENHPVQWITPLGLPIVQPYRRLRRHNINTSLQVLTLQRETDKVMIKRQRTAF 1620
            DCAKVIA EN PV+W TPLGLP+VQPYR+L RH I TSLQVLTLQRETDKVM+KRQRTAF
Sbjct: 818  DCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAF 877

Query: 1621 PPNFVHSLDGSHMMMTALACKKAGLNFAGVHDSFWTHACDVDEMNRILREKFVELYEQPI 1800
            PPNFVHSLDGSHMMMTA+ACK+ GLNFAGVHDS+WTHACDVD MN+ILREKFVELY+ PI
Sbjct: 878  PPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVELYDTPI 937

Query: 1801 LENLLENFQGSFPKLEFPSLPVRGDFNLKEVLQSPYFFN 1917
            LENLLE+F+ SFPKL+FP LP RGDF++KEVL+SPYFFN
Sbjct: 938  LENLLESFEKSFPKLKFPPLPERGDFDMKEVLESPYFFN 976


>ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like isoform
            X2 [Oryza brachyantha]
          Length = 839

 Score = 1024 bits (2648), Expect = 0.0
 Identities = 485/639 (75%), Positives = 562/639 (87%)
 Frame = +1

Query: 1    SAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHM 180
            +AYIQPP  Q +DGPPDIRPAF H M+T+  +    SR++GVI+CDPL+ QGL++TAKHM
Sbjct: 204  TAYIQPPASQSADGPPDIRPAFTHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLDRTAKHM 263

Query: 181  VIPYMPMLVPPENWIRYDKGAHLFLPSYVMRTHGSKQQRLEVKNTPVKQIQRVFDALNTL 360
            VIPYMPML+PP +W  YDKGAHLFLPSYVMRTHG++QQR  VK  P +Q+Q VF+AL+TL
Sbjct: 264  VIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVFEALDTL 323

Query: 361  GNTKWRVNKKLLEIVDRVWASGGKYAGLVDLADVVLPEKPETEDEAELRNWKWKIKNAKK 540
            G+TKWRVNK++L IVDR+W+SGG+ A LVD +DV LPEKP+TEDEA+L+ W+W +K AKK
Sbjct: 324  GSTKWRVNKRVLSIVDRIWSSGGRLADLVDRSDVALPEKPDTEDEAKLKKWRWNLKAAKK 383

Query: 541  ENNERHAHRCDLELKLAVAHKMSAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 720
            EN+ERH+ RCD+ELKLAVA KM  E+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LE
Sbjct: 384  ENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLE 443

Query: 721  FAEGHPLGNSGLRWLKIHLANLFATGGVDKKSYEGRIAFTESNLDNIFDSADKPLEGNQW 900
            FAEG PLG SGLRWLKIHLANL+A GGVDK SY+GRIAFTE++L++IFDSAD+PLEG +W
Sbjct: 444  FAEGRPLGKSGLRWLKIHLANLYA-GGVDKLSYDGRIAFTENHLEDIFDSADRPLEGKRW 502

Query: 901  WLGAEDPFQCLAVCMNLSEALRSSSPETTISHIPIHQDGSCNGLQHYAALGRDKLGAAAV 1080
            WLGAEDPFQCLAVC+NL+EALRS SPET ISHIP+HQDGSCNGLQHYAALGRDKLGA AV
Sbjct: 503  WLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLGAIAV 562

Query: 1081 NLVAGEKPADVYSGIADRVREIMQEDSQKDPAADPNVFRAKMLIEKDWVNRKLVKQTVMT 1260
            NLVAGEKPADVY+GIA RV EIM+ D+ KDPA DP+  RA+ML+  D V+RKLVKQTVMT
Sbjct: 563  NLVAGEKPADVYTGIATRVLEIMRNDALKDPATDPDAARARMLV--DQVDRKLVKQTVMT 620

Query: 1261 SVYGVTYAGARDQINRRLREQDPATDNKEQFTLACYAAKVTLTALEEMFEAARRIMKWLS 1440
            SVYGVTY GAR+QI RRL+E+D   D+ E F+ +CYAAKVTLTAL EMF+AAR IM WL 
Sbjct: 621  SVYGVTYVGAREQIKRRLKERDMIGDDSELFSASCYAAKVTLTALGEMFQAARSIMNWLG 680

Query: 1441 DCAKVIASENHPVQWITPLGLPIVQPYRRLRRHNINTSLQVLTLQRETDKVMIKRQRTAF 1620
            DCAK+IA EN PV+W TPLGLP+VQPYR+L RH I TSLQVLTLQRETDKVM+KRQRTAF
Sbjct: 681  DCAKIIACENEPVKWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAF 740

Query: 1621 PPNFVHSLDGSHMMMTALACKKAGLNFAGVHDSFWTHACDVDEMNRILREKFVELYEQPI 1800
            PPNFVHSLDGSHMMMTA+ACK+ GLNFAGVHDS+WTHACDVD MN+ILREKFVELY+ PI
Sbjct: 741  PPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVELYDTPI 800

Query: 1801 LENLLENFQGSFPKLEFPSLPVRGDFNLKEVLQSPYFFN 1917
            LENLL +F+ SFP+L+FP LP RGDF+LK+VL SPYFFN
Sbjct: 801  LENLLGSFEKSFPELKFPPLPERGDFDLKDVLGSPYFFN 839


>ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
            putative [Ricinus communis] gi|223546175|gb|EEF47677.1|
            DNA-directed RNA polymerase 2, chloroplast/mitochondrial
            precursor, putative [Ricinus communis]
          Length = 997

 Score = 1024 bits (2648), Expect = 0.0
 Identities = 484/639 (75%), Positives = 556/639 (87%)
 Frame = +1

Query: 1    SAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHM 180
            +AYIQPPV+QL DG PDIRPAF H++K +  D+   SR++GVIECDP++  GLEK+A+HM
Sbjct: 362  TAYIQPPVNQLGDGLPDIRPAFMHTLKNVMKDTQKTSRRYGVIECDPIVRNGLEKSARHM 421

Query: 181  VIPYMPMLVPPENWIRYDKGAHLFLPSYVMRTHGSKQQRLEVKNTPVKQIQRVFDALNTL 360
            VIPYMPMLVPP NW  YD+GA+LFLPSYVMRTHG+KQQR  VK TP KQ++ V++ALNTL
Sbjct: 422  VIPYMPMLVPPLNWEGYDQGAYLFLPSYVMRTHGAKQQRNAVKRTPWKQLEPVYEALNTL 481

Query: 361  GNTKWRVNKKLLEIVDRVWASGGKYAGLVDLADVVLPEKPETEDEAELRNWKWKIKNAKK 540
            GNTKWR+NKK+L +VDR+WA+GG+ AGL+D  D  LPE+ ETEDE E++ WKWK+KN KK
Sbjct: 482  GNTKWRINKKILTVVDRIWANGGRLAGLIDREDEPLPEELETEDENEIKKWKWKVKNVKK 541

Query: 541  ENNERHAHRCDLELKLAVAHKMSAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 720
            EN+ERH+ RCD+ELKLAVA KM  EDGFYYPHNLDFRGRAYPMHP+LNHLGSD+CRGILE
Sbjct: 542  ENSERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGILE 601

Query: 721  FAEGHPLGNSGLRWLKIHLANLFATGGVDKKSYEGRIAFTESNLDNIFDSADKPLEGNQW 900
            FAEG PLG SG RWLKIHLAN++A GGVDK SYEGR+AFTE++LD IFDSAD+PLEG +W
Sbjct: 602  FAEGRPLGKSGFRWLKIHLANVYA-GGVDKLSYEGRVAFTENHLDYIFDSADRPLEGRRW 660

Query: 901  WLGAEDPFQCLAVCMNLSEALRSSSPETTISHIPIHQDGSCNGLQHYAALGRDKLGAAAV 1080
            WLGAEDPFQCLA C NL+EA RSSSPETTISH+PIHQDGSCNGLQHYAALGRDKLGAAAV
Sbjct: 661  WLGAEDPFQCLATCFNLAEAFRSSSPETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAV 720

Query: 1081 NLVAGEKPADVYSGIADRVREIMQEDSQKDPAADPNVFRAKMLIEKDWVNRKLVKQTVMT 1260
            NLV+GEKPADVYSGIA RV +IM+ D++KDP  +PN   AK+LI +  V+RKLVKQTVMT
Sbjct: 721  NLVSGEKPADVYSGIAARVLDIMRTDAEKDPGTNPNALHAKLLINE--VDRKLVKQTVMT 778

Query: 1261 SVYGVTYAGARDQINRRLREQDPATDNKEQFTLACYAAKVTLTALEEMFEAARRIMKWLS 1440
            SVYGVTY GARDQI RRL+E+D   D+   +  +CYAAK TL ALEEMFE AR IM WL 
Sbjct: 779  SVYGVTYIGARDQIKRRLKERDAVADDPSLYAASCYAAKTTLMALEEMFEGARSIMAWLG 838

Query: 1441 DCAKVIASENHPVQWITPLGLPIVQPYRRLRRHNINTSLQVLTLQRETDKVMIKRQRTAF 1620
            +CAKVIASEN PVQW TPLGLP+VQPYR+L RH I TSLQ+L LQ+ETDK+M+KRQRTAF
Sbjct: 839  ECAKVIASENQPVQWTTPLGLPVVQPYRQLGRHLIKTSLQMLALQKETDKIMVKRQRTAF 898

Query: 1621 PPNFVHSLDGSHMMMTALACKKAGLNFAGVHDSFWTHACDVDEMNRILREKFVELYEQPI 1800
            PPNFVHSLDGSHMMMTA+ACK AGLNFAGVHDS+WTHACDVDEMNRILRE FVELYE PI
Sbjct: 899  PPNFVHSLDGSHMMMTAVACKHAGLNFAGVHDSYWTHACDVDEMNRILRENFVELYEAPI 958

Query: 1801 LENLLENFQGSFPKLEFPSLPVRGDFNLKEVLQSPYFFN 1917
            LENLLE FQ SFPKL+FP LP RGDF+L++VL+SPYFFN
Sbjct: 959  LENLLEGFQKSFPKLKFPPLPDRGDFDLRDVLESPYFFN 997


>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
          Length = 1002

 Score = 1024 bits (2648), Expect = 0.0
 Identities = 484/639 (75%), Positives = 564/639 (88%)
 Frame = +1

Query: 1    SAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHM 180
            +AYIQPP DQL DGPPDIRPAF H++KT+  +++  SR++GVI+CDPL+ +GL+KTA+HM
Sbjct: 369  TAYIQPPNDQLDDGPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHM 426

Query: 181  VIPYMPMLVPPENWIRYDKGAHLFLPSYVMRTHGSKQQRLEVKNTPVKQIQRVFDALNTL 360
            VIPYMPMLVPP++W+ YDKG +LFLPSY+MRTHG+KQQR  VK  P KQ++ VF AL+TL
Sbjct: 427  VIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTL 486

Query: 361  GNTKWRVNKKLLEIVDRVWASGGKYAGLVDLADVVLPEKPETEDEAELRNWKWKIKNAKK 540
            GNTKWRVN+K+L IV+R+WASGG+ A LVD  DV LPE P+TEDEAE+R WKWK+K  KK
Sbjct: 487  GNTKWRVNRKVLGIVNRIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVKGVKK 546

Query: 541  ENNERHAHRCDLELKLAVAHKMSAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 720
            EN ERH+ RCD+ELKLAVA KM  EDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE
Sbjct: 547  ENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 606

Query: 721  FAEGHPLGNSGLRWLKIHLANLFATGGVDKKSYEGRIAFTESNLDNIFDSADKPLEGNQW 900
            FAEG PLG SGLRWLKIHLAN++  GGVDK SYEGR+AF+E++L++IFDSA++PLEG +W
Sbjct: 607  FAEGRPLGTSGLRWLKIHLANVYG-GGVDKLSYEGRVAFSENHLEDIFDSAERPLEGKRW 665

Query: 901  WLGAEDPFQCLAVCMNLSEALRSSSPETTISHIPIHQDGSCNGLQHYAALGRDKLGAAAV 1080
            WLGAEDPFQCLA C+N++EALRS SPET IS++PIHQDGSCNGLQHYAALGRDKLGAAAV
Sbjct: 666  WLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDKLGAAAV 725

Query: 1081 NLVAGEKPADVYSGIADRVREIMQEDSQKDPAADPNVFRAKMLIEKDWVNRKLVKQTVMT 1260
            NLVAG+KPADVYSGIA RV +IM+ D+ KDPA DPNV RA++LI +  V+RKLVKQTVMT
Sbjct: 726  NLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQ--VDRKLVKQTVMT 783

Query: 1261 SVYGVTYAGARDQINRRLREQDPATDNKEQFTLACYAAKVTLTALEEMFEAARRIMKWLS 1440
            SVYGVTY GARDQI +RL+E+    D+ E F  ACYAAK TLTAL EMFEAAR IM WL 
Sbjct: 784  SVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLG 843

Query: 1441 DCAKVIASENHPVQWITPLGLPIVQPYRRLRRHNINTSLQVLTLQRETDKVMIKRQRTAF 1620
            DCAK+IA ENHPV+W TPLGLP+VQPYR+L RH I TSLQ+LTLQRETDKVM+KRQRTAF
Sbjct: 844  DCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAF 903

Query: 1621 PPNFVHSLDGSHMMMTALACKKAGLNFAGVHDSFWTHACDVDEMNRILREKFVELYEQPI 1800
            PPNFVHSLDGSHMMMTA+ACK++GL+FAGVHDS+WTHACDVD+MN+ILREKFVELY+ PI
Sbjct: 904  PPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILREKFVELYDAPI 963

Query: 1801 LENLLENFQGSFPKLEFPSLPVRGDFNLKEVLQSPYFFN 1917
            LENLLE+FQ SFP L+FP LP RGDF+L+EVL+SPYFFN
Sbjct: 964  LENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score = 1023 bits (2644), Expect = 0.0
 Identities = 489/640 (76%), Positives = 560/640 (87%), Gaps = 1/640 (0%)
 Frame = +1

Query: 1    SAYIQPPVD-QLSDGPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKH 177
            +AYIQPPVD QL+D PPDIRPAF H+ KT+  ++  + R+FGVIECDPL+ +GLE+TA+H
Sbjct: 399  TAYIQPPVDNQLADTPPDIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLERTARH 458

Query: 178  MVIPYMPMLVPPENWIRYDKGAHLFLPSYVMRTHGSKQQRLEVKNTPVKQIQRVFDALNT 357
            MVIPY+PMLVPP  W  YDKGAHLFLPSYVMRTHG++QQR  VK  P  Q++ VF+ALNT
Sbjct: 459  MVIPYVPMLVPPLKWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFEALNT 518

Query: 358  LGNTKWRVNKKLLEIVDRVWASGGKYAGLVDLADVVLPEKPETEDEAELRNWKWKIKNAK 537
            LGNTKWR+NK+L ++VDR+WA GG  A LVD  DV LPEKP+TEDEA+LR WKWK+K+ K
Sbjct: 519  LGNTKWRINKRLFDVVDRIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKVKSVK 578

Query: 538  KENNERHAHRCDLELKLAVAHKMSAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGIL 717
            K N+ERH+ RCD+ELKLAVA KM  EDGF+YPHNLDFRGRAYPMHPYLNHLGSDLCRGIL
Sbjct: 579  KANSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGIL 638

Query: 718  EFAEGHPLGNSGLRWLKIHLANLFATGGVDKKSYEGRIAFTESNLDNIFDSADKPLEGNQ 897
            EFAEG PLG+SGL WLKIHLANLFA GGVDK S+EGRI FTE++LD+IFDSAD+PLEG +
Sbjct: 639  EFAEGRPLGSSGLHWLKIHLANLFA-GGVDKLSHEGRITFTENHLDDIFDSADRPLEGKR 697

Query: 898  WWLGAEDPFQCLAVCMNLSEALRSSSPETTISHIPIHQDGSCNGLQHYAALGRDKLGAAA 1077
            WWL AEDPFQ LA C+NLSEALRSSSPETTISHIP+HQDGSCNGLQHYAALGRD+LGA A
Sbjct: 698  WWLNAEDPFQFLAACINLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDQLGATA 757

Query: 1078 VNLVAGEKPADVYSGIADRVREIMQEDSQKDPAADPNVFRAKMLIEKDWVNRKLVKQTVM 1257
            VNLVAGEKPADVYSGIA RV +IM+ D++KDPA  P+  RA++LI +  V+RKLVKQTVM
Sbjct: 758  VNLVAGEKPADVYSGIAARVLDIMKRDAEKDPAIFPDALRARILINQ--VDRKLVKQTVM 815

Query: 1258 TSVYGVTYAGARDQINRRLREQDPATDNKEQFTLACYAAKVTLTALEEMFEAARRIMKWL 1437
            TSVYGVTY GARDQI RRL+E++   D+ E F  ACYAAK+TLTAL EMF+AAR IM WL
Sbjct: 816  TSVYGVTYIGARDQIKRRLKERNAIADDVELFGAACYAAKITLTALGEMFQAARSIMSWL 875

Query: 1438 SDCAKVIASENHPVQWITPLGLPIVQPYRRLRRHNINTSLQVLTLQRETDKVMIKRQRTA 1617
             DCAK+IASEN PV+W TPLGLP+VQPYR+L RH I TSLQVLTLQRET+ +M+KRQRTA
Sbjct: 876  GDCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETETIMVKRQRTA 935

Query: 1618 FPPNFVHSLDGSHMMMTALACKKAGLNFAGVHDSFWTHACDVDEMNRILREKFVELYEQP 1797
            FPPNFVHSLDGSHMMMTA+ACKKAGLNFAGVHDS+WTHACDVDEMNR+LREKFV+LYE P
Sbjct: 936  FPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDEMNRLLREKFVQLYETP 995

Query: 1798 ILENLLENFQGSFPKLEFPSLPVRGDFNLKEVLQSPYFFN 1917
            ILENLLE+FQ SFP LEFP LP RGDF+L+EVL+SPYFFN
Sbjct: 996  ILENLLESFQQSFPALEFPPLPERGDFDLREVLESPYFFN 1035


>ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
            gi|462422319|gb|EMJ26582.1| hypothetical protein
            PRUPE_ppa000780mg [Prunus persica]
          Length = 1006

 Score = 1022 bits (2643), Expect = 0.0
 Identities = 484/639 (75%), Positives = 560/639 (87%)
 Frame = +1

Query: 1    SAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHM 180
            +AYIQPPVDQ+ DGPPDIRPAF H++KTI  D+   SR++GVIECDP++ +G+EKTA+HM
Sbjct: 371  TAYIQPPVDQIGDGPPDIRPAFVHNLKTITRDTQKTSRRYGVIECDPIVRKGMEKTARHM 430

Query: 181  VIPYMPMLVPPENWIRYDKGAHLFLPSYVMRTHGSKQQRLEVKNTPVKQIQRVFDALNTL 360
            V+PYMPMLVPP NW  YD+GA+LFLPSYVMRTHG+KQQR  VK TP KQ++ VF+AL+TL
Sbjct: 431  VMPYMPMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQQREVVKRTPRKQLEPVFEALDTL 490

Query: 361  GNTKWRVNKKLLEIVDRVWASGGKYAGLVDLADVVLPEKPETEDEAELRNWKWKIKNAKK 540
            G+TKWRVNK++L ++DR+WASGG+ A LVD  DV LPE+P+TEDEAE+R WKWK+K AKK
Sbjct: 491  GSTKWRVNKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKLKAAKK 550

Query: 541  ENNERHAHRCDLELKLAVAHKMSAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 720
            EN+ERH+ RCD+ELKLA + KM  E+GFYYPHNLDFRGRAYPMHPYLNHLGSD+CRGILE
Sbjct: 551  ENSERHSQRCDIELKLAASRKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDMCRGILE 610

Query: 721  FAEGHPLGNSGLRWLKIHLANLFATGGVDKKSYEGRIAFTESNLDNIFDSADKPLEGNQW 900
            F+EG  LG SGLRWLKIHLANL+A GGVDK S++ R AFTE+++D IFDSAD+PLEG +W
Sbjct: 611  FSEGRHLGKSGLRWLKIHLANLYA-GGVDKLSFDDRAAFTENHVDEIFDSADRPLEGRRW 669

Query: 901  WLGAEDPFQCLAVCMNLSEALRSSSPETTISHIPIHQDGSCNGLQHYAALGRDKLGAAAV 1080
            WLGAEDPFQCLA C+NL EALRS SPETTIS++P+HQDGSCNGLQHYAALGRDKLGAAAV
Sbjct: 670  WLGAEDPFQCLAACINLCEALRSPSPETTISYMPVHQDGSCNGLQHYAALGRDKLGAAAV 729

Query: 1081 NLVAGEKPADVYSGIADRVREIMQEDSQKDPAADPNVFRAKMLIEKDWVNRKLVKQTVMT 1260
            NLV G+KPADVYSGIA RV +IM+ D++KDPA +PN   A++LI +  V+RKLVKQTVMT
Sbjct: 730  NLVGGDKPADVYSGIAARVLDIMRNDAEKDPATNPNALHARLLINQ--VDRKLVKQTVMT 787

Query: 1261 SVYGVTYAGARDQINRRLREQDPATDNKEQFTLACYAAKVTLTALEEMFEAARRIMKWLS 1440
            SVYGVTY GARDQI RRL+E+    D+   F  ACYAA+ TLTAL EMFEAAR IM WL 
Sbjct: 788  SVYGVTYVGARDQIKRRLKERGSIADDTALFAAACYAARTTLTALGEMFEAARSIMSWLG 847

Query: 1441 DCAKVIASENHPVQWITPLGLPIVQPYRRLRRHNINTSLQVLTLQRETDKVMIKRQRTAF 1620
            +CAKVIASEN PV+WITPLGLP+VQPYR+L RH I TSLQVLTLQRETDKVM+KRQRTAF
Sbjct: 848  ECAKVIASENQPVRWITPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMVKRQRTAF 907

Query: 1621 PPNFVHSLDGSHMMMTALACKKAGLNFAGVHDSFWTHACDVDEMNRILREKFVELYEQPI 1800
            PPNFVHSLDGSHMMMTA+ACKKAGLNFAGVHDS+WTHACD+DEMNRILREKFVELYE PI
Sbjct: 908  PPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDIDEMNRILREKFVELYEAPI 967

Query: 1801 LENLLENFQGSFPKLEFPSLPVRGDFNLKEVLQSPYFFN 1917
            LENLLE FQ SFP L FP LP RGDF+L++VL+SPYFFN
Sbjct: 968  LENLLEGFQQSFPTLTFPPLPDRGDFDLRDVLESPYFFN 1006


>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
            gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
            Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
            single subunit RNA polymerase [Oryza sativa Japonica
            Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza
            sativa Japonica Group]
          Length = 1017

 Score = 1021 bits (2640), Expect = 0.0
 Identities = 484/639 (75%), Positives = 560/639 (87%)
 Frame = +1

Query: 1    SAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHM 180
            +AYIQPP  Q +DGPPDIRPAF H M+T+  +    SR++GVI+CDPL+ QGL++TAKHM
Sbjct: 382  TAYIQPPASQSADGPPDIRPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHM 441

Query: 181  VIPYMPMLVPPENWIRYDKGAHLFLPSYVMRTHGSKQQRLEVKNTPVKQIQRVFDALNTL 360
            VIPYMPML+PP +W  YDKGAHLFLPSYVMRTHG++QQR  V+  P +Q+Q VF+ALNTL
Sbjct: 442  VIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTL 501

Query: 361  GNTKWRVNKKLLEIVDRVWASGGKYAGLVDLADVVLPEKPETEDEAELRNWKWKIKNAKK 540
            G+TKWRVNK++L IVDR+W+SGG+ A LVD  DV LPEKP+TEDE +L+ W+W ++ AKK
Sbjct: 502  GSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDKLKKWRWTLRAAKK 561

Query: 541  ENNERHAHRCDLELKLAVAHKMSAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 720
            EN+ERH+ RCD+ELKLAVA KM  EDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LE
Sbjct: 562  ENSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLE 621

Query: 721  FAEGHPLGNSGLRWLKIHLANLFATGGVDKKSYEGRIAFTESNLDNIFDSADKPLEGNQW 900
            FAEG PLG SGLRWLKIHLANL+A GGVDK SY+GRIAFTE++L++IFDSAD+PLEG +W
Sbjct: 622  FAEGRPLGKSGLRWLKIHLANLYA-GGVDKLSYDGRIAFTENHLEDIFDSADRPLEGKRW 680

Query: 901  WLGAEDPFQCLAVCMNLSEALRSSSPETTISHIPIHQDGSCNGLQHYAALGRDKLGAAAV 1080
            WLGAEDPFQCLAVC+NL+EALRS SPET ISHIP+HQDGSCNGLQHYAALGRDKLGA AV
Sbjct: 681  WLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLGAIAV 740

Query: 1081 NLVAGEKPADVYSGIADRVREIMQEDSQKDPAADPNVFRAKMLIEKDWVNRKLVKQTVMT 1260
            NLVAGEKPADVY+GIA RV EIM+ D+ KDPA DP+  RA++L+  D V+RKLVKQTVMT
Sbjct: 741  NLVAGEKPADVYTGIATRVVEIMKNDALKDPATDPDAARARLLL--DQVDRKLVKQTVMT 798

Query: 1261 SVYGVTYAGARDQINRRLREQDPATDNKEQFTLACYAAKVTLTALEEMFEAARRIMKWLS 1440
            SVYGVTY GAR+QI RRL+E+D   D+ E F+ +CYAAKVTLTAL EMF+AAR IM WL 
Sbjct: 799  SVYGVTYVGAREQIKRRLKERDMICDDSELFSASCYAAKVTLTALGEMFQAARSIMNWLG 858

Query: 1441 DCAKVIASENHPVQWITPLGLPIVQPYRRLRRHNINTSLQVLTLQRETDKVMIKRQRTAF 1620
            DCAKVIA EN PV+W TPLGLP+VQPYR+L RH I TSLQVLTLQRETDKVM+KRQRTAF
Sbjct: 859  DCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAF 918

Query: 1621 PPNFVHSLDGSHMMMTALACKKAGLNFAGVHDSFWTHACDVDEMNRILREKFVELYEQPI 1800
            PPNFVHSLDGSHMMMTA+ACK+ GLNFAGVHDS+WTHACDVD MN+ILREKFVELY+ PI
Sbjct: 919  PPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVELYDTPI 978

Query: 1801 LENLLENFQGSFPKLEFPSLPVRGDFNLKEVLQSPYFFN 1917
            LENLLE+F+ SFP+L+FP LP RGDF+L +VL SPYFFN
Sbjct: 979  LENLLESFEKSFPELKFPPLPERGDFDLTDVLGSPYFFN 1017


>gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
          Length = 983

 Score = 1021 bits (2640), Expect = 0.0
 Identities = 484/639 (75%), Positives = 560/639 (87%)
 Frame = +1

Query: 1    SAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHM 180
            +AYIQPP  Q +DGPPDIRPAF H M+T+  +    SR++GVI+CDPL+ QGL++TAKHM
Sbjct: 348  TAYIQPPASQSADGPPDIRPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHM 407

Query: 181  VIPYMPMLVPPENWIRYDKGAHLFLPSYVMRTHGSKQQRLEVKNTPVKQIQRVFDALNTL 360
            VIPYMPML+PP +W  YDKGAHLFLPSYVMRTHG++QQR  V+  P +Q+Q VF+ALNTL
Sbjct: 408  VIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTL 467

Query: 361  GNTKWRVNKKLLEIVDRVWASGGKYAGLVDLADVVLPEKPETEDEAELRNWKWKIKNAKK 540
            G+TKWRVNK++L IVDR+W+SGG+ A LVD  DV LPEKP+TEDE +L+ W+W ++ AKK
Sbjct: 468  GSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDKLKKWRWTLRAAKK 527

Query: 541  ENNERHAHRCDLELKLAVAHKMSAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 720
            EN+ERH+ RCD+ELKLAVA KM  EDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LE
Sbjct: 528  ENSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLE 587

Query: 721  FAEGHPLGNSGLRWLKIHLANLFATGGVDKKSYEGRIAFTESNLDNIFDSADKPLEGNQW 900
            FAEG PLG SGLRWLKIHLANL+A GGVDK SY+GRIAFTE++L++IFDSAD+PLEG +W
Sbjct: 588  FAEGRPLGKSGLRWLKIHLANLYA-GGVDKLSYDGRIAFTENHLEDIFDSADRPLEGKRW 646

Query: 901  WLGAEDPFQCLAVCMNLSEALRSSSPETTISHIPIHQDGSCNGLQHYAALGRDKLGAAAV 1080
            WLGAEDPFQCLAVC+NL+EALRS SPET ISHIP+HQDGSCNGLQHYAALGRDKLGA AV
Sbjct: 647  WLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLGAIAV 706

Query: 1081 NLVAGEKPADVYSGIADRVREIMQEDSQKDPAADPNVFRAKMLIEKDWVNRKLVKQTVMT 1260
            NLVAGEKPADVY+GIA RV EIM+ D+ KDPA DP+  RA++L+  D V+RKLVKQTVMT
Sbjct: 707  NLVAGEKPADVYTGIATRVVEIMKNDALKDPATDPDAARARLLL--DQVDRKLVKQTVMT 764

Query: 1261 SVYGVTYAGARDQINRRLREQDPATDNKEQFTLACYAAKVTLTALEEMFEAARRIMKWLS 1440
            SVYGVTY GAR+QI RRL+E+D   D+ E F+ +CYAAKVTLTAL EMF+AAR IM WL 
Sbjct: 765  SVYGVTYVGAREQIKRRLKERDMICDDSELFSASCYAAKVTLTALGEMFQAARSIMNWLG 824

Query: 1441 DCAKVIASENHPVQWITPLGLPIVQPYRRLRRHNINTSLQVLTLQRETDKVMIKRQRTAF 1620
            DCAKVIA EN PV+W TPLGLP+VQPYR+L RH I TSLQVLTLQRETDKVM+KRQRTAF
Sbjct: 825  DCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAF 884

Query: 1621 PPNFVHSLDGSHMMMTALACKKAGLNFAGVHDSFWTHACDVDEMNRILREKFVELYEQPI 1800
            PPNFVHSLDGSHMMMTA+ACK+ GLNFAGVHDS+WTHACDVD MN+ILREKFVELY+ PI
Sbjct: 885  PPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVELYDTPI 944

Query: 1801 LENLLENFQGSFPKLEFPSLPVRGDFNLKEVLQSPYFFN 1917
            LENLLE+F+ SFP+L+FP LP RGDF+L +VL SPYFFN
Sbjct: 945  LENLLESFEKSFPELKFPPLPERGDFDLTDVLGSPYFFN 983


>ref|XP_002315996.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|550329816|gb|EEF02167.2| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 862

 Score = 1021 bits (2639), Expect = 0.0
 Identities = 485/639 (75%), Positives = 558/639 (87%)
 Frame = +1

Query: 1    SAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHM 180
            +AYIQPP+DQ+ DGPPDIRPAF H++KTI  D+   SR++GVIECDPL+ +GLEK+A+HM
Sbjct: 227  TAYIQPPIDQIGDGPPDIRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHM 286

Query: 181  VIPYMPMLVPPENWIRYDKGAHLFLPSYVMRTHGSKQQRLEVKNTPVKQIQRVFDALNTL 360
            VIPYMPMLVPP NW  YD+GA+ FLPSYVMR HG+KQQR+ +K     Q++ VF AL+TL
Sbjct: 287  VIPYMPMLVPPLNWTGYDQGAYFFLPSYVMRIHGAKQQRVAIKRASRNQLEPVFKALDTL 346

Query: 361  GNTKWRVNKKLLEIVDRVWASGGKYAGLVDLADVVLPEKPETEDEAELRNWKWKIKNAKK 540
            GNTKWRVNK++L ++DR+WASGG  AGLVD  DV LPE+P+TEDEAE+R W+WK+K+ KK
Sbjct: 347  GNTKWRVNKRILGVIDRIWASGGHLAGLVDREDVPLPEEPQTEDEAEIRKWRWKVKSVKK 406

Query: 541  ENNERHAHRCDLELKLAVAHKMSAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 720
            EN+ERH+ RCD+ELKLAVA KM  E+GFYYPHN+DFRGRAYPMHPYLNHLGSD+CRGILE
Sbjct: 407  ENSERHSQRCDVELKLAVARKMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDVCRGILE 466

Query: 721  FAEGHPLGNSGLRWLKIHLANLFATGGVDKKSYEGRIAFTESNLDNIFDSADKPLEGNQW 900
            FAEG PLG SGLRWLKIHLANL+A GGVDK SY+GRI+FTE++LD+IFDSAD+PLEG +W
Sbjct: 467  FAEGRPLGKSGLRWLKIHLANLYA-GGVDKLSYDGRISFTENHLDDIFDSADRPLEGQRW 525

Query: 901  WLGAEDPFQCLAVCMNLSEALRSSSPETTISHIPIHQDGSCNGLQHYAALGRDKLGAAAV 1080
            WLGAEDPFQCLAVC+NLSEALRS SPET ISH P+HQDGSCNGLQHYAALGRDKLGAAAV
Sbjct: 526  WLGAEDPFQCLAVCINLSEALRSPSPETAISHTPVHQDGSCNGLQHYAALGRDKLGAAAV 585

Query: 1081 NLVAGEKPADVYSGIADRVREIMQEDSQKDPAADPNVFRAKMLIEKDWVNRKLVKQTVMT 1260
            NLV G KPADVYSGIA RV +IM+ D++ DPA +PN   AK+LI +  V+RKLVKQTVMT
Sbjct: 586  NLVGGGKPADVYSGIAARVLDIMRRDAENDPAINPNSVHAKLLINQ--VDRKLVKQTVMT 643

Query: 1261 SVYGVTYAGARDQINRRLREQDPATDNKEQFTLACYAAKVTLTALEEMFEAARRIMKWLS 1440
            SVYGVTY GARDQI RRL+E+    D+ + ++ ACYAAK TLTALEEMFE AR IM WL 
Sbjct: 644  SVYGVTYIGARDQIKRRLKERCNIADDPQLYSAACYAAKTTLTALEEMFEGARGIMAWLG 703

Query: 1441 DCAKVIASENHPVQWITPLGLPIVQPYRRLRRHNINTSLQVLTLQRETDKVMIKRQRTAF 1620
            +CAKVIASEN PVQW TP GLP+VQPYR+L R  I TSLQVLTLQRETDKVM+KRQRTAF
Sbjct: 704  ECAKVIASENQPVQWTTPFGLPVVQPYRQLGRQLIKTSLQVLTLQRETDKVMVKRQRTAF 763

Query: 1621 PPNFVHSLDGSHMMMTALACKKAGLNFAGVHDSFWTHACDVDEMNRILREKFVELYEQPI 1800
            PPNFVHSLDGSHMMMTA+ACK+AGLNFAGVHDS+WTHACDVDEMNRILREKFVELYE PI
Sbjct: 764  PPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPI 823

Query: 1801 LENLLENFQGSFPKLEFPSLPVRGDFNLKEVLQSPYFFN 1917
            LENLLE+FQ SFP L+FP LP RGDF+L++VLQS YFFN
Sbjct: 824  LENLLESFQSSFPNLKFPPLPERGDFDLRDVLQSTYFFN 862


>ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Populus trichocarpa]
            gi|550332836|gb|EEE88785.2| hypothetical protein
            POPTR_0008s11200g [Populus trichocarpa]
          Length = 988

 Score = 1019 bits (2634), Expect = 0.0
 Identities = 486/639 (76%), Positives = 556/639 (87%)
 Frame = +1

Query: 1    SAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHM 180
            +AYIQPP+DQ+ DGPPDIRPAF H++KTI  D+   SR++GVIECDPL+ +GLEK+A+HM
Sbjct: 353  TAYIQPPIDQIGDGPPDIRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHM 412

Query: 181  VIPYMPMLVPPENWIRYDKGAHLFLPSYVMRTHGSKQQRLEVKNTPVKQIQRVFDALNTL 360
            VIPYMPMLVPP NW  YD+GAHLFLPSYVMR HGSKQQR  VK     Q++ VF AL+TL
Sbjct: 413  VIPYMPMLVPPLNWTGYDQGAHLFLPSYVMRIHGSKQQRDAVKRASRNQLEPVFKALDTL 472

Query: 361  GNTKWRVNKKLLEIVDRVWASGGKYAGLVDLADVVLPEKPETEDEAELRNWKWKIKNAKK 540
            GNTKWR+NK++L +VDR+WASGG  AGLVD  D  LPE+P+TEDEAE+R W WK+++ KK
Sbjct: 473  GNTKWRINKRVLVVVDRIWASGGHLAGLVDREDAPLPEEPQTEDEAEIRKWTWKVRSVKK 532

Query: 541  ENNERHAHRCDLELKLAVAHKMSAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 720
            EN+ERH+ RCD+ELKLAVA KM  E+GFYYPHNLDFRGRAYPMHPYLNHLGSD+CRGILE
Sbjct: 533  ENSERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDVCRGILE 592

Query: 721  FAEGHPLGNSGLRWLKIHLANLFATGGVDKKSYEGRIAFTESNLDNIFDSADKPLEGNQW 900
            FAEG PLG SGLRWLKIHLANL+A GGVDK SY+GRI+FTE++LD+IFDSAD+PLEG +W
Sbjct: 593  FAEGRPLGKSGLRWLKIHLANLYA-GGVDKLSYDGRISFTENHLDDIFDSADQPLEGRRW 651

Query: 901  WLGAEDPFQCLAVCMNLSEALRSSSPETTISHIPIHQDGSCNGLQHYAALGRDKLGAAAV 1080
            WLGAEDPFQCLA C+NLSEALRS SPET  SH P+HQDGSCNGLQHYAALGRDKLGAAAV
Sbjct: 652  WLGAEDPFQCLAACINLSEALRSPSPETATSHTPVHQDGSCNGLQHYAALGRDKLGAAAV 711

Query: 1081 NLVAGEKPADVYSGIADRVREIMQEDSQKDPAADPNVFRAKMLIEKDWVNRKLVKQTVMT 1260
            NLV GEKPADVYSGIA RV +IMQ D++KDPA +PN   AK+L+ +  V+RKLVKQTVMT
Sbjct: 712  NLVGGEKPADVYSGIATRVLDIMQRDAEKDPAINPNSVHAKLLVNQ--VDRKLVKQTVMT 769

Query: 1261 SVYGVTYAGARDQINRRLREQDPATDNKEQFTLACYAAKVTLTALEEMFEAARRIMKWLS 1440
            SVYGVTY GARDQI RRL+E+    D+ + ++ ACYAAK TL ALEEMFE AR IM WL 
Sbjct: 770  SVYGVTYIGARDQIKRRLKERCIIADDPQLYSAACYAAKTTLMALEEMFEGARGIMAWLG 829

Query: 1441 DCAKVIASENHPVQWITPLGLPIVQPYRRLRRHNINTSLQVLTLQRETDKVMIKRQRTAF 1620
            +CAKVIASEN PV+W TPLGLP+VQPYR+L RH I TSLQVLTL+RETDKVM+KRQRTAF
Sbjct: 830  ECAKVIASENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLTLKRETDKVMVKRQRTAF 889

Query: 1621 PPNFVHSLDGSHMMMTALACKKAGLNFAGVHDSFWTHACDVDEMNRILREKFVELYEQPI 1800
            PPNFVHSLDGSHMMMTA+ACK+AGLNFAGVHDS+WTHACDVDEMNRILREKFVELYE PI
Sbjct: 890  PPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYEAPI 949

Query: 1801 LENLLENFQGSFPKLEFPSLPVRGDFNLKEVLQSPYFFN 1917
            LENLLE+FQ SFP L+FP LP RG F+LK+VL+S YFFN
Sbjct: 950  LENLLESFQSSFPNLKFPPLPERGVFDLKDVLRSTYFFN 988


>ref|XP_006844103.1| hypothetical protein AMTR_s00006p00254180 [Amborella trichopoda]
            gi|548846502|gb|ERN05778.1| hypothetical protein
            AMTR_s00006p00254180 [Amborella trichopoda]
          Length = 1006

 Score = 1018 bits (2632), Expect = 0.0
 Identities = 480/639 (75%), Positives = 555/639 (86%)
 Frame = +1

Query: 1    SAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHM 180
            +AY+QPPVDQ ++GPPDIRPAF+H +KT+  +   + R++GVIECDPLI +GLEKTA+HM
Sbjct: 371  TAYVQPPVDQSAEGPPDIRPAFRHILKTVTKNDQKIRRRYGVIECDPLICKGLEKTARHM 430

Query: 181  VIPYMPMLVPPENWIRYDKGAHLFLPSYVMRTHGSKQQRLEVKNTPVKQIQRVFDALNTL 360
            VIPYMPMLVPP  W  YD+G HLFLPSYVMR HG++QQR  +K+ P KQ+ +V++AL+TL
Sbjct: 431  VIPYMPMLVPPVKWTGYDRGGHLFLPSYVMRIHGARQQRYAIKHAPRKQLLKVYEALDTL 490

Query: 361  GNTKWRVNKKLLEIVDRVWASGGKYAGLVDLADVVLPEKPETEDEAELRNWKWKIKNAKK 540
            G TKWRVNK++L ++DR+WA GG+ A LVD  DV +PEKP+TEDEA++R WKW +K A+K
Sbjct: 491  GTTKWRVNKRVLGVIDRIWADGGRLADLVDREDVAIPEKPDTEDEAKIREWKWLVKGARK 550

Query: 541  ENNERHAHRCDLELKLAVAHKMSAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 720
            +N+E H+ RCD ELKL VA +M  E+GF+YPHNLDFRGRAYPMHPYLNHLGSDLCRGILE
Sbjct: 551  KNSELHSQRCDTELKLNVARRMKDEEGFHYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 610

Query: 721  FAEGHPLGNSGLRWLKIHLANLFATGGVDKKSYEGRIAFTESNLDNIFDSADKPLEGNQW 900
            FAEG PLG SGLRWLKIHLANL+A GGVDK SY+GR+ F E++L++IFDSAD+PLEG +W
Sbjct: 611  FAEGRPLGKSGLRWLKIHLANLYA-GGVDKLSYDGRLEFVENHLEDIFDSADRPLEGGRW 669

Query: 901  WLGAEDPFQCLAVCMNLSEALRSSSPETTISHIPIHQDGSCNGLQHYAALGRDKLGAAAV 1080
            WLGAEDPFQCLA C+NLSEALRSSSP+TTISH+P+HQDGSCNGLQHYAALGRDKLGA AV
Sbjct: 670  WLGAEDPFQCLAACVNLSEALRSSSPDTTISHMPVHQDGSCNGLQHYAALGRDKLGAIAV 729

Query: 1081 NLVAGEKPADVYSGIADRVREIMQEDSQKDPAADPNVFRAKMLIEKDWVNRKLVKQTVMT 1260
            NLVAGEKPADVYSGIA+RV +IM+ DSQKDP +DPNV RAK+L+ +  V+RKLVKQTVMT
Sbjct: 730  NLVAGEKPADVYSGIAERVLDIMRRDSQKDPTSDPNVARAKLLLNQ--VDRKLVKQTVMT 787

Query: 1261 SVYGVTYAGARDQINRRLREQDPATDNKEQFTLACYAAKVTLTALEEMFEAARRIMKWLS 1440
            SVYGVTY GARDQI RRL+E+   TD KE F+ +CY AKVTLTAL EMF+AAR IM WL 
Sbjct: 788  SVYGVTYVGARDQIMRRLKERGAITDEKELFSASCYTAKVTLTALGEMFQAARSIMSWLG 847

Query: 1441 DCAKVIASENHPVQWITPLGLPIVQPYRRLRRHNINTSLQVLTLQRETDKVMIKRQRTAF 1620
            DCAKVIASEN  V+W TPLGLP+VQPYR+L RH I TSLQVL L+ ETDKVM+KRQRTAF
Sbjct: 848  DCAKVIASENETVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLALRCETDKVMVKRQRTAF 907

Query: 1621 PPNFVHSLDGSHMMMTALACKKAGLNFAGVHDSFWTHACDVDEMNRILREKFVELYEQPI 1800
            PPNFVHSLDGSHMMMTA+ACKKAGLNFAGVHDS+WTHACDVDEMNRILREKFVELY  PI
Sbjct: 908  PPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYSTPI 967

Query: 1801 LENLLENFQGSFPKLEFPSLPVRGDFNLKEVLQSPYFFN 1917
            LENLL NFQ  FPKL FP LP RGDF+LKEVL SPYFFN
Sbjct: 968  LENLLRNFQELFPKLSFPPLPARGDFDLKEVLDSPYFFN 1006


>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
            tuberosum]
          Length = 993

 Score = 1016 bits (2628), Expect = 0.0
 Identities = 482/639 (75%), Positives = 562/639 (87%)
 Frame = +1

Query: 1    SAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHM 180
            +AYIQPP DQL D PPDIRPAF H++KT+  +++  SR++GVI+CDPL+ +GL+KTA+HM
Sbjct: 360  TAYIQPPNDQLDDCPPDIRPAFMHTLKTV--ETVKGSRRYGVIQCDPLVRKGLDKTARHM 417

Query: 181  VIPYMPMLVPPENWIRYDKGAHLFLPSYVMRTHGSKQQRLEVKNTPVKQIQRVFDALNTL 360
            VIPYMPMLVPP+NW  YD+GA+LFLPSY+MRTHG+KQQR  VK  P KQ++ VF AL+TL
Sbjct: 418  VIPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTL 477

Query: 361  GNTKWRVNKKLLEIVDRVWASGGKYAGLVDLADVVLPEKPETEDEAELRNWKWKIKNAKK 540
            GNTKWRVNK++L I+DR+WASGG+ A LVD  DV LPE+P+TEDE E++ WKWK+K AKK
Sbjct: 478  GNTKWRVNKRVLGILDRIWASGGRLADLVDREDVPLPEEPDTEDEEEIKKWKWKVKAAKK 537

Query: 541  ENNERHAHRCDLELKLAVAHKMSAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 720
            EN ERH+ RCD+ELKLAVA KM  E+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE
Sbjct: 538  ENCERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 597

Query: 721  FAEGHPLGNSGLRWLKIHLANLFATGGVDKKSYEGRIAFTESNLDNIFDSADKPLEGNQW 900
            F+EG PLG SGLRWLKIHLAN++  GGVDK SYEGR AF+E+++++IFDSAD+PLEG +W
Sbjct: 598  FSEGRPLGKSGLRWLKIHLANVYG-GGVDKLSYEGRAAFSENHVEDIFDSADRPLEGRRW 656

Query: 901  WLGAEDPFQCLAVCMNLSEALRSSSPETTISHIPIHQDGSCNGLQHYAALGRDKLGAAAV 1080
            WLGAEDPFQCLA C+N+SEALRS SPET+ISH+PIHQDGSCNGLQHYAALGRDKLGAAAV
Sbjct: 657  WLGAEDPFQCLATCINISEALRSPSPETSISHMPIHQDGSCNGLQHYAALGRDKLGAAAV 716

Query: 1081 NLVAGEKPADVYSGIADRVREIMQEDSQKDPAADPNVFRAKMLIEKDWVNRKLVKQTVMT 1260
            NLVAG+KPADVYSGIA RV +IM+ D+ KDPA DPNV RA++LI +  V+RKLVKQTVMT
Sbjct: 717  NLVAGDKPADVYSGIAARVLDIMKRDADKDPATDPNVMRARLLINQ--VDRKLVKQTVMT 774

Query: 1261 SVYGVTYAGARDQINRRLREQDPATDNKEQFTLACYAAKVTLTALEEMFEAARRIMKWLS 1440
            SVYGVTY GARDQI RRL+E+    D+ E F+ ACYAAK TLTAL EMFEAAR IM WL 
Sbjct: 775  SVYGVTYIGARDQIKRRLKERGAIEDDNELFSAACYAAKTTLTALGEMFEAARSIMSWLG 834

Query: 1441 DCAKVIASENHPVQWITPLGLPIVQPYRRLRRHNINTSLQVLTLQRETDKVMIKRQRTAF 1620
            DCAK+IA EN PV+W TPLGLP+VQPYR+L RH I TSLQ+LTLQRETDKVM+KRQRTAF
Sbjct: 835  DCAKIIAMENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAF 894

Query: 1621 PPNFVHSLDGSHMMMTALACKKAGLNFAGVHDSFWTHACDVDEMNRILREKFVELYEQPI 1800
            PPNFVHSLDGSHMMMTA+ CK+AGL+FAGVHDS+WTHA DVD+MN+ILREKFVELY+ PI
Sbjct: 895  PPNFVHSLDGSHMMMTAITCKEAGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPI 954

Query: 1801 LENLLENFQGSFPKLEFPSLPVRGDFNLKEVLQSPYFFN 1917
            LENLLE+FQ SFP L+FP LP RGDF+L+EVL+SPYFFN
Sbjct: 955  LENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 993


>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score = 1014 bits (2623), Expect = 0.0
 Identities = 480/639 (75%), Positives = 562/639 (87%)
 Frame = +1

Query: 1    SAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHM 180
            +AYIQPP DQL D PPDIRPAF H++KT+  +++  SR++GVI+CDPL+ +GL+KTA+HM
Sbjct: 369  TAYIQPPNDQLDDCPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHM 426

Query: 181  VIPYMPMLVPPENWIRYDKGAHLFLPSYVMRTHGSKQQRLEVKNTPVKQIQRVFDALNTL 360
            VIPYMPMLVPP++W+ YDKGA+LFLPSY+MRTHG+KQQR  VK  P KQ++ VF AL+TL
Sbjct: 427  VIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTL 486

Query: 361  GNTKWRVNKKLLEIVDRVWASGGKYAGLVDLADVVLPEKPETEDEAELRNWKWKIKNAKK 540
            GNTKWR+N+K+L IVDR+WASGG+ A LVD  DV LPE+P+ EDEA++R WKWK+K  KK
Sbjct: 487  GNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKK 546

Query: 541  ENNERHAHRCDLELKLAVAHKMSAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 720
            EN ERH+ RCD+ELKLAVA KM  EDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE
Sbjct: 547  ENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 606

Query: 721  FAEGHPLGNSGLRWLKIHLANLFATGGVDKKSYEGRIAFTESNLDNIFDSADKPLEGNQW 900
            FAEG PLG SGLRWLKIHLAN++  GGVDK SYEGR+AF+E+++++IFDSA++PLEG +W
Sbjct: 607  FAEGRPLGKSGLRWLKIHLANVYG-GGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRW 665

Query: 901  WLGAEDPFQCLAVCMNLSEALRSSSPETTISHIPIHQDGSCNGLQHYAALGRDKLGAAAV 1080
            WLGAEDPFQCLA C+N++EALRS SPET IS++PIHQDGSCNGLQHYAALGRD LGAAAV
Sbjct: 666  WLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAV 725

Query: 1081 NLVAGEKPADVYSGIADRVREIMQEDSQKDPAADPNVFRAKMLIEKDWVNRKLVKQTVMT 1260
            NLVAG+KPADVYSGIA RV +IM+ D+ KDPA DPNV RA++LI +  V+RKLVKQTVMT
Sbjct: 726  NLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQ--VDRKLVKQTVMT 783

Query: 1261 SVYGVTYAGARDQINRRLREQDPATDNKEQFTLACYAAKVTLTALEEMFEAARRIMKWLS 1440
            SVYGVTY GARDQI RRL+E+    D+ E F  ACYAAK TLTAL EMFEAAR IM WL 
Sbjct: 784  SVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLG 843

Query: 1441 DCAKVIASENHPVQWITPLGLPIVQPYRRLRRHNINTSLQVLTLQRETDKVMIKRQRTAF 1620
            DCAK+IA ENHPV+W TPLGLP+VQPYR+L RH I TSLQ+LTLQRETDKVM+KRQRTAF
Sbjct: 844  DCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAF 903

Query: 1621 PPNFVHSLDGSHMMMTALACKKAGLNFAGVHDSFWTHACDVDEMNRILREKFVELYEQPI 1800
            PPNFVHSLDGSHMMMTA+ACK++GL+FAGVHDS+WTHA DVD+MN+ILREKFVELY+ PI
Sbjct: 904  PPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPI 963

Query: 1801 LENLLENFQGSFPKLEFPSLPVRGDFNLKEVLQSPYFFN 1917
            LENLLE+FQ SFP L+FP LP RGDF+L+EVL+SPYFFN
Sbjct: 964  LENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002


>dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
            sylvestris]
          Length = 1002

 Score = 1014 bits (2623), Expect = 0.0
 Identities = 480/639 (75%), Positives = 562/639 (87%)
 Frame = +1

Query: 1    SAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHM 180
            +AYIQPP DQL D PPDIRPAF H++KT+  +++  SR++GVI+CDPL+ +GL+KTA+HM
Sbjct: 369  TAYIQPPNDQLDDCPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHM 426

Query: 181  VIPYMPMLVPPENWIRYDKGAHLFLPSYVMRTHGSKQQRLEVKNTPVKQIQRVFDALNTL 360
            VIPYMPMLVPP++W+ YDKGA+LFLPSY+MRTHG+KQQR  VK  P KQ++ VF AL+TL
Sbjct: 427  VIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTL 486

Query: 361  GNTKWRVNKKLLEIVDRVWASGGKYAGLVDLADVVLPEKPETEDEAELRNWKWKIKNAKK 540
            GNTKWR+N+K+L IVDR+WASGG+ A LVD  DV LPE+P+ EDEA++R WKWK+K  KK
Sbjct: 487  GNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKK 546

Query: 541  ENNERHAHRCDLELKLAVAHKMSAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 720
            EN ERH+ RCD+ELKLAVA KM  EDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE
Sbjct: 547  ENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 606

Query: 721  FAEGHPLGNSGLRWLKIHLANLFATGGVDKKSYEGRIAFTESNLDNIFDSADKPLEGNQW 900
            FAEG PLG SGLRWLKIHLAN++  GGVDK SYEGR+AF+E+++++IFDSA++PLEG +W
Sbjct: 607  FAEGRPLGKSGLRWLKIHLANVYG-GGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRW 665

Query: 901  WLGAEDPFQCLAVCMNLSEALRSSSPETTISHIPIHQDGSCNGLQHYAALGRDKLGAAAV 1080
            WLGAEDPFQCLA C+N++EALRS SPET IS++PIHQDGSCNGLQHYAALGRD LGAAAV
Sbjct: 666  WLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAV 725

Query: 1081 NLVAGEKPADVYSGIADRVREIMQEDSQKDPAADPNVFRAKMLIEKDWVNRKLVKQTVMT 1260
            NLVAG+KPADVYSGIA RV +IM+ D+ KDPA DPNV RA++LI +  V+RKLVKQTVMT
Sbjct: 726  NLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQ--VDRKLVKQTVMT 783

Query: 1261 SVYGVTYAGARDQINRRLREQDPATDNKEQFTLACYAAKVTLTALEEMFEAARRIMKWLS 1440
            SVYGVTY GARDQI RRL+E+    D+ E F  ACYAAK TLTAL EMFEAAR IM WL 
Sbjct: 784  SVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLG 843

Query: 1441 DCAKVIASENHPVQWITPLGLPIVQPYRRLRRHNINTSLQVLTLQRETDKVMIKRQRTAF 1620
            DCAK+IA ENHPV+W TPLGLP+VQPYR+L RH I TSLQ+LTLQRETDKVM+KRQRTAF
Sbjct: 844  DCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAF 903

Query: 1621 PPNFVHSLDGSHMMMTALACKKAGLNFAGVHDSFWTHACDVDEMNRILREKFVELYEQPI 1800
            PPNFVHSLDGSHMMMTA+ACK++GL+FAGVHDS+WTHA DVD+MN+ILREKFVELY+ PI
Sbjct: 904  PPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPI 963

Query: 1801 LENLLENFQGSFPKLEFPSLPVRGDFNLKEVLQSPYFFN 1917
            LENLLE+FQ SFP L+FP LP RGDF+L+EVL+SPYFFN
Sbjct: 964  LENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002


>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
            Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 1; Flags: Precursor
            gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single
            subunit RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score = 1014 bits (2623), Expect = 0.0
 Identities = 480/639 (75%), Positives = 562/639 (87%)
 Frame = +1

Query: 1    SAYIQPPVDQLSDGPPDIRPAFKHSMKTIKIDSLNLSRKFGVIECDPLIFQGLEKTAKHM 180
            +AYIQPP DQL D PPDIRPAF H++KT+  +++  SR++GVI+CDPL+ +GL+KTA+HM
Sbjct: 369  TAYIQPPNDQLDDCPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHM 426

Query: 181  VIPYMPMLVPPENWIRYDKGAHLFLPSYVMRTHGSKQQRLEVKNTPVKQIQRVFDALNTL 360
            VIPYMPMLVPP++W+ YDKGA+LFLPSY+MRTHG+KQQR  VK  P KQ++ VF AL+TL
Sbjct: 427  VIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTL 486

Query: 361  GNTKWRVNKKLLEIVDRVWASGGKYAGLVDLADVVLPEKPETEDEAELRNWKWKIKNAKK 540
            GNTKWR+N+K+L IVDR+WASGG+ A LVD  DV LPE+P+ EDEA++R WKWK+K  KK
Sbjct: 487  GNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKK 546

Query: 541  ENNERHAHRCDLELKLAVAHKMSAEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 720
            EN ERH+ RCD+ELKLAVA KM  EDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE
Sbjct: 547  ENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILE 606

Query: 721  FAEGHPLGNSGLRWLKIHLANLFATGGVDKKSYEGRIAFTESNLDNIFDSADKPLEGNQW 900
            FAEG PLG SGLRWLKIHLAN++  GGVDK SYEGR+AF+E+++++IFDSA++PLEG +W
Sbjct: 607  FAEGRPLGKSGLRWLKIHLANVYG-GGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRW 665

Query: 901  WLGAEDPFQCLAVCMNLSEALRSSSPETTISHIPIHQDGSCNGLQHYAALGRDKLGAAAV 1080
            WLGAEDPFQCLA C+N++EALRS SPET IS++PIHQDGSCNGLQHYAALGRD LGAAAV
Sbjct: 666  WLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAV 725

Query: 1081 NLVAGEKPADVYSGIADRVREIMQEDSQKDPAADPNVFRAKMLIEKDWVNRKLVKQTVMT 1260
            NLVAG+KPADVYSGIA RV +IM+ D+ KDPA DPNV RA++LI +  V+RKLVKQTVMT
Sbjct: 726  NLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQ--VDRKLVKQTVMT 783

Query: 1261 SVYGVTYAGARDQINRRLREQDPATDNKEQFTLACYAAKVTLTALEEMFEAARRIMKWLS 1440
            SVYGVTY GARDQI RRL+E+    D+ E F  ACYAAK TLTAL EMFEAAR IM WL 
Sbjct: 784  SVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLG 843

Query: 1441 DCAKVIASENHPVQWITPLGLPIVQPYRRLRRHNINTSLQVLTLQRETDKVMIKRQRTAF 1620
            DCAK+IA ENHPV+W TPLGLP+VQPYR+L RH I TSLQ+LTLQRETDKVM+KRQRTAF
Sbjct: 844  DCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAF 903

Query: 1621 PPNFVHSLDGSHMMMTALACKKAGLNFAGVHDSFWTHACDVDEMNRILREKFVELYEQPI 1800
            PPNFVHSLDGSHMMMTA+ACK++GL+FAGVHDS+WTHA DVD+MN+ILREKFVELY+ PI
Sbjct: 904  PPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPI 963

Query: 1801 LENLLENFQGSFPKLEFPSLPVRGDFNLKEVLQSPYFFN 1917
            LENLLE+FQ SFP L+FP LP RGDF+L+EVL+SPYFFN
Sbjct: 964  LENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002