BLASTX nr result

ID: Papaver25_contig00018046 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver25_contig00018046
         (1541 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...    44   1e-06

>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score = 44.3 bits (103), Expect(2) = 1e-06
 Identities = 16/36 (44%), Positives = 27/36 (75%)
 Frame = +2

Query: 332 WGNSASHRKQHYISWAKFSREKSQGGLWLRPSKDLS 439
           WG+S + RKQH ISW +  + +S+GGL +R ++D++
Sbjct: 352 WGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMN 387



 Score = 37.0 bits (84), Expect(2) = 1e-06
 Identities = 18/47 (38%), Positives = 29/47 (61%)
 Frame = +1

Query: 187 SRVNSWKKRFLTHAGKPILVHSVLALIPLCLMPTCIIPQVTRKKIDQ 327
           +R+  WK RFL+ AG+  L  +VL+ IP+  M T  +P+ T   +D+
Sbjct: 299 TRLAGWKGRFLSLAGRVTLTKAVLSSIPVHTMSTIALPKSTLDGLDK 345


Top