BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver25_contig00013572
         (1618 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007199810.1| hypothetical protein PRUPE_ppa004969mg [Prun...   527   e-147
ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   522   e-145
ref|XP_007199809.1| hypothetical protein PRUPE_ppa004969mg [Prun...   520   e-145
ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Popu...   494   e-137
gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]           478   e-132
ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citr...   473   e-130
ref|XP_007042534.1| Ribosomal pseudouridine synthase, putative [...   471   e-130
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   469   e-129
ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mit...   466   e-128
ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   461   e-127
ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   459   e-126
ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [A...   446   e-122
ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   446   e-122
gb|EYU42699.1| hypothetical protein MIMGU_mgv1a006097mg [Mimulus...   444   e-122
ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   442   e-121
ref|XP_004511295.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   436   e-119
ref|XP_006486999.1| PREDICTED: RNA pseudouridine synthase 4, mit...   424   e-116
ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mit...   423   e-115
ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatul...   423   e-115
ref|XP_006573909.1| PREDICTED: RNA pseudouridine synthase 4, mit...   422   e-115

>ref|XP_007199810.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
            gi|462395210|gb|EMJ01009.1| hypothetical protein
            PRUPE_ppa004969mg [Prunus persica]
          Length = 483

 Score =  527 bits (1358), Expect = e-147
 Identities = 268/442 (60%), Positives = 333/442 (75%), Gaps = 6/442 (1%)
 Frame = -3

Query: 1391 KWLTLPPFTSNANDAASVSKEFSR---FNRRRIGEEASVSDPKSSMTALKWVTRCCPQIP 1221
            KW TLPPFT+  N +A + KE SR   + R  I + A+ S   ++ TALKWVTRCCP++P
Sbjct: 49   KWFTLPPFTATINGSA-LGKELSRNRSYGRDVITKTATASTTSTTTTALKWVTRCCPELP 107

Query: 1220 KTLIQKLFRLRQVRRKSVDSTSADNLGAQDQESRLRRVAAKDAMNWGDTIHLPVSVHSPA 1041
            ++L+QKLFRLRQVRR+S D   +   G +  E  L+RVAAKD+MN GD IHLP+SV    
Sbjct: 108  RSLVQKLFRLRQVRRESCDMECSGE-GVEALERPLKRVAAKDSMNVGDRIHLPLSVQE-- 164

Query: 1040 ERINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVINKPPGLPVQGGIGIKQSL 861
                  D   L  DK+EC   ++E T+I SLELYKDP+IIVINKPPG+PVQGGIGIK+SL
Sbjct: 165  ---FPNDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQGGIGIKRSL 221

Query: 860  DALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSIFREKTFEASADATDN 681
            D LA+  L YD+SEPPRLVHRLDRDSSG+LV+GRTQTSAT+LHSIFREKTF AS D  D+
Sbjct: 222  DELAAACLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFGASNDEIDD 281

Query: 680  TKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERIT-VGDNRNMPSQHAITEYR 504
             KRILQ++YWALVIG+PR+  GLISAPLGKV++DNGKS+RIT V D++ +PSQHAIT+Y+
Sbjct: 282  AKRILQRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPSQHAITKYK 341

Query: 503  LVQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKGLPWTNPTE 324
            ++ SP  G TW+EL+PLTGRKHQLRVHCAEVL TPIVGDYKYGWQ H+NWK L W+N   
Sbjct: 342  VIGSPCPGYTWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGWQTHRNWKPLAWSNNEC 401

Query: 323  RSAEKLPKMPS--FVLDSKTGSISEKEPHLHLHCRQMIFPDVHMALQHVHXXXXXXXXXX 150
             S E+ PK  +  F L+ ++GS+SEK P LHLHC+QM+ P+V++ALQ+V           
Sbjct: 402  HSDEEFPKRKNLPFDLNMESGSVSEKNPRLHLHCKQMVLPNVNLALQNVKLHSDSDLSEL 461

Query: 149  XXXDFVAPLPAHMQRSWDILNS 84
               + VA LP+ MQRSW+I NS
Sbjct: 462  ESLELVAALPSFMQRSWNITNS 483


>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis vinifera]
            gi|296090438|emb|CBI40257.3| unnamed protein product
            [Vitis vinifera]
          Length = 476

 Score =  522 bits (1344), Expect = e-145
 Identities = 270/440 (61%), Positives = 328/440 (74%), Gaps = 3/440 (0%)
 Frame = -3

Query: 1394 GKWLTLPPFTSNANDAASVSKEFSRFNRRRIGEEASVSDPKSSMTALKWVTRCCPQIPKT 1215
            GKW TLP FT    DA+S+ K  S     R       +   +S TALKWV RCCPQ+P++
Sbjct: 54   GKWFTLPAFTPVV-DASSLGKVLSG---HRTDLNTGNTTAGASTTALKWVVRCCPQLPRS 109

Query: 1214 LIQKLFRLRQVRRKSVDSTSADNLGAQDQESRLRRVAAKDAMNWGDTIHLPVSVHSPAER 1035
            L+QKLFRLRQVRR+S +  ++D +G Q+QE RL+RVAAKD MN GD I LP++V      
Sbjct: 110  LVQKLFRLRQVRRESYNMITSD-IGVQNQEHRLKRVAAKDLMNLGDQILLPITVEE---- 164

Query: 1034 INSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVINKPPGLPVQGGIGIKQSLDA 855
                       +K E   +D+E  ++H+LELYKDP+IIV+NKPPGLPVQGGIGIK+SLD 
Sbjct: 165  --------FPSEKHEYHCNDEEINFVHNLELYKDPAIIVVNKPPGLPVQGGIGIKRSLDE 216

Query: 854  LASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSIFREKTFEASADATDNTK 675
            LA+TYLRYD SEPPRLVHRLDRDSSG+L++GRTQTSATILHSIFREKTF AS +  D  K
Sbjct: 217  LAATYLRYDCSEPPRLVHRLDRDSSGILIMGRTQTSATILHSIFREKTFGASNNDIDTKK 276

Query: 674  RILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITVGDN-RNMPSQHAITEYRLV 498
            RILQ++YWALVIG+PRR  GLISAPLGKV++D+GKSERIT+ DN + M SQHAITEYR++
Sbjct: 277  RILQRRYWALVIGSPRRPRGLISAPLGKVVVDDGKSERITIVDNVQTMSSQHAITEYRVI 336

Query: 497  QSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKGLPWTNPTERS 318
            +S   G TW+ELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH+ WK L  +N  +  
Sbjct: 337  KSSCHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWKQLFQSNIEKNL 396

Query: 317  AEKLP--KMPSFVLDSKTGSISEKEPHLHLHCRQMIFPDVHMALQHVHXXXXXXXXXXXX 144
             E L   K   F LD ++GSI +K+PHLHLHC+QM+ P+V +ALQ++             
Sbjct: 397  DENLSNRKTHPFGLDLESGSILDKQPHLHLHCKQMVLPNVSLALQNLQLSAECDLSELES 456

Query: 143  XDFVAPLPAHMQRSWDILNS 84
             +FVAPLP+HMQRSWDILNS
Sbjct: 457  LEFVAPLPSHMQRSWDILNS 476


>ref|XP_007199809.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
            gi|462395209|gb|EMJ01008.1| hypothetical protein
            PRUPE_ppa004969mg [Prunus persica]
          Length = 481

 Score =  520 bits (1340), Expect = e-145
 Identities = 267/442 (60%), Positives = 332/442 (75%), Gaps = 6/442 (1%)
 Frame = -3

Query: 1391 KWLTLPPFTSNANDAASVSKEFSR---FNRRRIGEEASVSDPKSSMTALKWVTRCCPQIP 1221
            KW TLPPFT+  N +A + KE SR   + R  I + A+ S   ++ TALKWVTRCCP++P
Sbjct: 49   KWFTLPPFTATINGSA-LGKELSRNRSYGRDVITKTATASTTSTTTTALKWVTRCCPELP 107

Query: 1220 KTLIQKLFRLRQVRRKSVDSTSADNLGAQDQESRLRRVAAKDAMNWGDTIHLPVSVHSPA 1041
            ++L+QKLFRLRQVRR+S D   +   G +  E  L+RVAAKD+MN GD IHLP+SV    
Sbjct: 108  RSLVQKLFRLRQVRRESCDMECSGE-GVEALERPLKRVAAKDSMNVGDRIHLPLSVQE-- 164

Query: 1040 ERINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVINKPPGLPVQGGIGIKQSL 861
                  D   L  DK+EC   ++E T+I SLELYKDP+IIVINKPPG+PVQGGIGIK+SL
Sbjct: 165  ---FPNDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQGGIGIKRSL 221

Query: 860  DALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSIFREKTFEASADATDN 681
            D LA+  L YD+SEPPRLVHRLDRDSSG+LV+GRTQTSAT+LHSIFREKTF AS D  D+
Sbjct: 222  DELAAACLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFGASNDEIDD 281

Query: 680  TKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERIT-VGDNRNMPSQHAITEYR 504
             KRILQ++YWALVIG+PR+  GLISAPLGKV++DNGKS+RIT V D++ +PSQHAIT+Y+
Sbjct: 282  AKRILQRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPSQHAITKYK 341

Query: 503  LVQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKGLPWTNPTE 324
            ++ SP    TW+EL+PLTGRKHQLRVHCAEVL TPIVGDYKYGWQ H+NWK L W+N   
Sbjct: 342  VIGSPC--YTWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGWQTHRNWKPLAWSNNEC 399

Query: 323  RSAEKLPKMPS--FVLDSKTGSISEKEPHLHLHCRQMIFPDVHMALQHVHXXXXXXXXXX 150
             S E+ PK  +  F L+ ++GS+SEK P LHLHC+QM+ P+V++ALQ+V           
Sbjct: 400  HSDEEFPKRKNLPFDLNMESGSVSEKNPRLHLHCKQMVLPNVNLALQNVKLHSDSDLSEL 459

Query: 149  XXXDFVAPLPAHMQRSWDILNS 84
               + VA LP+ MQRSW+I NS
Sbjct: 460  ESLELVAALPSFMQRSWNITNS 481


>ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Populus trichocarpa]
            gi|550331407|gb|EEE87831.2| hypothetical protein
            POPTR_0009s09860g [Populus trichocarpa]
          Length = 471

 Score =  494 bits (1273), Expect = e-137
 Identities = 258/441 (58%), Positives = 313/441 (70%), Gaps = 6/441 (1%)
 Frame = -3

Query: 1394 GKWLTLPPFTSNANDAASVSKEFSRFNRRRIGEEASVSDPKSSM---TALKWVTRCCPQI 1224
            GKW TLPP+TS  N +              +G   S   P  S    TALKWV RCCP++
Sbjct: 56   GKWFTLPPYTSTINGSV-------------LGIALSARIPAKSASETTALKWVLRCCPEL 102

Query: 1223 PKTLIQKLFRLRQVRRKSVDSTSADNLGAQDQESRLRRVAAKDAMNWGDTIHLPVSVHSP 1044
            P+ L+QKLFRLRQVRR+S    S  NLG Q QE RL+RVAAKD+M+ GD I LP+SV   
Sbjct: 103  PRNLVQKLFRLRQVRRESPVMESC-NLGDQGQEHRLKRVAAKDSMDVGDRIFLPISVKV- 160

Query: 1043 AERINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVINKPPGLPVQGGIGIKQS 864
                       L  +KQ+C  +++E  +I  LELYKD +IIV+NKPPG+PVQGGIGIK+S
Sbjct: 161  -----------LPAEKQDCHCNEEEINFIRGLELYKDAAIIVVNKPPGMPVQGGIGIKRS 209

Query: 863  LDALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSIFREKTFEASADATD 684
            LD L+++    DYSEPPRLVHRLDRD SG+LV+GRTQTSAT+LH+IFREKT  AS D   
Sbjct: 210  LDELSASCFSSDYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHAIFREKTLAASNDDVG 269

Query: 683  NTKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITVGDN-RNMPSQHAITEY 507
            N +RILQ+KYWALVIG+PRR  GLISAPLGKV++DNGKS+RITV +N +N+ SQHA+T+Y
Sbjct: 270  NKRRILQRKYWALVIGSPRRPKGLISAPLGKVVVDNGKSDRITVVENSQNLSSQHAVTQY 329

Query: 506  RLVQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKGLPWTNPT 327
            R+++S   G TW+ELSPLTGRKHQLRVHCAEVLGTPIVGDYKY WQAH+NWK L W+N  
Sbjct: 330  RVIESS-HGFTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYAWQAHRNWKQLQWSNIE 388

Query: 326  ERSAEK--LPKMPSFVLDSKTGSISEKEPHLHLHCRQMIFPDVHMALQHVHXXXXXXXXX 153
            + S +K    K+  F LD  +GSISEK P LHLHC+QM+ PDV  ALQ V          
Sbjct: 389  DNSNDKSLSEKILPFALDLDSGSISEKHPRLHLHCKQMVLPDVSKALQDVQLSSDYDFSQ 448

Query: 152  XXXXDFVAPLPAHMQRSWDIL 90
                 F APLP +M++SWDIL
Sbjct: 449  LASLKFDAPLPPYMKKSWDIL 469


>gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]
          Length = 470

 Score =  478 bits (1230), Expect = e-132
 Identities = 246/439 (56%), Positives = 309/439 (70%), Gaps = 3/439 (0%)
 Frame = -3

Query: 1391 KWLTLPPFTSNANDAASVSKEFSRFNRRRIGEEASVSDPKSSMTALKWVTRCCPQIPKTL 1212
            KW TLPP T+   D A + K  +      +  +   +   ++ TALKWV RCCP++P++L
Sbjct: 48   KWFTLPPHTATV-DGAVLGKAIAGAKDDDV--KVLQASKSAATTALKWVVRCCPELPRSL 104

Query: 1211 IQKLFRLRQVRRKSVDSTSADNLGAQDQESRLRRVAAKDAMNWGDTIHLPVSVHSPAERI 1032
            +QKLFRLRQVRR+S +     N G Q  + RLRRV+AKD++N GD I LP+SV       
Sbjct: 105  VQKLFRLRQVRRESFNVEDC-NAGDQLGKPRLRRVSAKDSLNLGDKIFLPISVKE----- 158

Query: 1031 NSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVINKPPGLPVQGGIGIKQSLDAL 852
                   L  +K+EC  +++E  +I SLELYKDP+I+V+NKPPGLPVQGGIGIK SLD L
Sbjct: 159  -------LPVEKKECFCNEEEVKFIRSLELYKDPAIVVVNKPPGLPVQGGIGIKTSLDQL 211

Query: 851  ASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSIFREKTFEASADATDNTKR 672
            A T L YDY+EPPRLVHRLDRD SG+LV+GRTQTSAT+LHSIFREKTF AS D T   K 
Sbjct: 212  AVTCLSYDYTEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTFGASNDETVKGKI 271

Query: 671  ILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERIT-VGDNRNMPSQHAITEYRLVQ 495
            +LQ++YWA VIG+PR  +GLISAPL KV++DNGKS+RIT V  +  + SQHAIT+Y+++ 
Sbjct: 272  VLQRRYWAFVIGSPRHPNGLISAPLRKVVLDNGKSDRITVVNGSHTLSSQHAITKYKVIG 331

Query: 494  SPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKGLPWTNPTERSA 315
            S   G TW+ELSPLTGRKHQLRVHCAEVLGTP+VGDYKYGWQAH++WK L W +P  +  
Sbjct: 332  SSSHGYTWLELSPLTGRKHQLRVHCAEVLGTPMVGDYKYGWQAHRDWKPLHWPDPDNKCI 391

Query: 314  EKLPKMPS--FVLDSKTGSISEKEPHLHLHCRQMIFPDVHMALQHVHXXXXXXXXXXXXX 141
            E LPK  +  F L+   GSISEK P LHLHC+QM+ P++   LQ+V              
Sbjct: 392  EVLPKRKNLPFGLNMDNGSISEKHPRLHLHCKQMVLPNISHVLQNVQRYSDYELSRLERL 451

Query: 140  DFVAPLPAHMQRSWDILNS 84
               APLP++MQRSW + NS
Sbjct: 452  KLDAPLPSYMQRSWHLTNS 470


>ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citrus clementina]
            gi|557524859|gb|ESR36165.1| hypothetical protein
            CICLE_v10028283mg [Citrus clementina]
          Length = 494

 Score =  473 bits (1217), Expect = e-130
 Identities = 243/440 (55%), Positives = 310/440 (70%), Gaps = 3/440 (0%)
 Frame = -3

Query: 1394 GKWLTLPPFTSNANDAASVSKEFSRFNRRRIGEEASVSDPKSSMTALKWVTRCCPQIPKT 1215
            GKW TLPPFTS   D +++ ++ +               P S  TALKWV +CCP +P+ 
Sbjct: 79   GKWFTLPPFTSTI-DGSALGRQLA----------CPSKSPISETTALKWVLQCCPGLPRN 127

Query: 1214 LIQKLFRLRQVRRKSVDSTSADNLGAQDQESRLRRVAAKDAMNWGDTIHLPVSVHSPAER 1035
             +QKLFRL QVRR+S    S+ N G  +QE +L+RVAAKD++  GD I LP+S+     R
Sbjct: 128  FVQKLFRLSQVRRESPSLDSSANEG-HEQEIKLKRVAAKDSLKLGDRIFLPISIQESPSR 186

Query: 1034 INSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVINKPPGLPVQGGIGIKQSLDA 855
                        K++C   ++E  +I SLELYKD +IIVINKP G+PVQGGIGI++S+D 
Sbjct: 187  ------------KEKCPCTEEEVGFIQSLELYKDSAIIVINKPHGMPVQGGIGIRRSIDE 234

Query: 854  LASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSIFREKTFEASADATDNTK 675
            LA+T L YDYSEPPRLVHRLDRDSSG+LV+GRTQTSAT+LHSIFREKTF AS +  DN K
Sbjct: 235  LAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEK 294

Query: 674  RILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITVGDN-RNMPSQHAITEYRLV 498
            RILQ+ YWALV+GTPR + G+ISAPL KV++DNGKS+RITV +N + M +QHA+T Y+++
Sbjct: 295  RILQRWYWALVVGTPRCSKGVISAPLRKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 354

Query: 497  QSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKGLPWTNPTERS 318
            +    G TW++LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ H+ WK    ++  + S
Sbjct: 355  KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNKDS 414

Query: 317  AEKLPKMPS--FVLDSKTGSISEKEPHLHLHCRQMIFPDVHMALQHVHXXXXXXXXXXXX 144
             ++ PK  +  F LD ++GSI EK+P LHLHC++M  P+V  A+Q V             
Sbjct: 415  NDETPKEKTLHFGLDLESGSILEKQPGLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLES 474

Query: 143  XDFVAPLPAHMQRSWDILNS 84
               VAPLP+HMQRSWD+LNS
Sbjct: 475  LKLVAPLPSHMQRSWDVLNS 494


>ref|XP_007042534.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao]
            gi|508706469|gb|EOX98365.1| Ribosomal pseudouridine
            synthase, putative [Theobroma cacao]
          Length = 477

 Score =  471 bits (1211), Expect = e-130
 Identities = 249/440 (56%), Positives = 311/440 (70%), Gaps = 4/440 (0%)
 Frame = -3

Query: 1391 KWLTLPPFTSNANDAASVSKEFSRFNRRRIGEEASVSDPKSSMTALKWVTRCCPQIPKTL 1212
            KW TLPPFT   N +   +K   + + +   E           TA+KWV RCCP++P++L
Sbjct: 62   KWFTLPPFTKTVNASVLGAKLSGKPHSKAANET----------TAVKWVMRCCPELPRSL 111

Query: 1211 IQKLFRLRQVRRKS-VDSTSADNLGAQDQESRLRRVAAKDAMNWGDTIHLPVSVHSPAER 1035
            +QKLFRLRQVRR+S V   + D  G Q Q  +L+RV AKDA+N GD I LP SV    E 
Sbjct: 112  VQKLFRLRQVRRESHVLEVAGD--GCQVQTVQLKRVGAKDALNIGDRIFLPFSVREFRE- 168

Query: 1034 INSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVINKPPGLPVQGGIGIKQSLDA 855
                       +KQE    ++E  +I  LELYKDP+IIV+NKPPG+PVQGGIGIK SLD 
Sbjct: 169  -----------EKQESGCTEEELNFIRGLELYKDPAIIVLNKPPGMPVQGGIGIKWSLDK 217

Query: 854  LASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSIFREKTFEASADATDNTK 675
            LA+  L +DYSEPPRLVHRLDRDSSG+LV+GRTQ SATILHS+FRE+T +AS D  DN K
Sbjct: 218  LAAACLCFDYSEPPRLVHRLDRDSSGILVMGRTQMSATILHSVFREETNDASKDDVDNEK 277

Query: 674  RILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITVGDNRN-MPSQHAITEYRLV 498
            RILQK+YWALVIG+PRR  G+I APL KV++D+GKS+RITV DN   + SQ A TEY+++
Sbjct: 278  RILQKRYWALVIGSPRRPKGMIVAPLRKVVVDDGKSDRITVFDNSQIVSSQRAKTEYQVI 337

Query: 497  QSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKGLPWTNPTERS 318
            ++   G TW+ELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH+ W+ LP ++  + S
Sbjct: 338  KTTSHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRRWQHLPESDLKKSS 397

Query: 317  AEKLPK--MPSFVLDSKTGSISEKEPHLHLHCRQMIFPDVHMALQHVHXXXXXXXXXXXX 144
             +K P+  M  F L+  +GSIS K P LHLHCR+MIFP+V  ALQ++             
Sbjct: 398  NDKCPEENMLPFGLNMDSGSISAKRPRLHLHCREMIFPNVSQALQNLQLSTDHDLSKLKS 457

Query: 143  XDFVAPLPAHMQRSWDILNS 84
             + VAPLP++MQ+SWDI+NS
Sbjct: 458  LEVVAPLPSYMQKSWDIMNS 477


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 536

 Score =  469 bits (1208), Expect = e-129
 Identities = 244/440 (55%), Positives = 307/440 (69%), Gaps = 3/440 (0%)
 Frame = -3

Query: 1394 GKWLTLPPFTSNANDAASVSKEFSRFNRRRIGEEASVSDPKSSMTALKWVTRCCPQIPKT 1215
            GK+ TLPP+TS  + +A + K  S           + +   +  TALKWV RCCP++P+ 
Sbjct: 126  GKFFTLPPYTSTISGSA-LGKALSA---------TATAKASTETTALKWVLRCCPELPRN 175

Query: 1214 LIQKLFRLRQVRRKSVDSTSADNLGAQDQESRLRRVAAKDAMNWGDTIHLPVSVHSPAER 1035
            L+QKLFRLRQV+R+ +      N+G  + E + +RVAAKD MN GD I LP+SV +    
Sbjct: 176  LVQKLFRLRQVKRELL------NVGDGEMEHKTKRVAAKDLMNVGDRIFLPISVQA---- 225

Query: 1034 INSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVINKPPGLPVQGGIGIKQSLDA 855
                    L  +KQ+C   +KE  +I  LELYKD +IIV+NKPPG+PVQGGIGIK S D 
Sbjct: 226  --------LPFEKQKCHCGEKEANFIRGLELYKDEAIIVVNKPPGMPVQGGIGIKSSFDE 277

Query: 854  LASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSIFREKTFEASADATDNTK 675
            LA++ L YDYSEPPRLVHRLDRDSSG+LV+GRTQTS  +LHS+FREKTF AS       +
Sbjct: 278  LAASCLSYDYSEPPRLVHRLDRDSSGILVMGRTQTSTMVLHSVFREKTFAASNHDIGERR 337

Query: 674  RILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITVGDNRNMPS-QHAITEYRLV 498
            RILQ+KYWALVIG+PRR  G+ISAPLGKV++D+GKS+RITV +N    S QHA+T+YR++
Sbjct: 338  RILQRKYWALVIGSPRRQKGIISAPLGKVVVDDGKSDRITVVENAESTSFQHAVTQYRVM 397

Query: 497  QSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKGLPWTNPTERS 318
            +S   G  W+ELSP+TGRKHQLRVHCAEVLGTPIVGDYKYGWQ H+ WK LP+ N  + S
Sbjct: 398  ESS-HGYAWLELSPITGRKHQLRVHCAEVLGTPIVGDYKYGWQVHRKWKQLPFPNLEKIS 456

Query: 317  AEK--LPKMPSFVLDSKTGSISEKEPHLHLHCRQMIFPDVHMALQHVHXXXXXXXXXXXX 144
             E     K+  F +D ++GSISEK P LHLHC+QM+ PDV  AL+ V             
Sbjct: 457  NENALCKKILPFGIDLESGSISEKHPRLHLHCKQMVLPDVSQALRGVQTSSNYDFSDLKS 516

Query: 143  XDFVAPLPAHMQRSWDILNS 84
             +  APLP++MQRSWDILNS
Sbjct: 517  IELDAPLPSYMQRSWDILNS 536


>ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Solanum
            tuberosum]
          Length = 467

 Score =  466 bits (1198), Expect = e-128
 Identities = 242/441 (54%), Positives = 307/441 (69%), Gaps = 5/441 (1%)
 Frame = -3

Query: 1391 KWLTLPPFTSNANDAASVSKEFSRFNRRRIGEEASVSDPKSS-MTALKWVTRCCPQIPKT 1215
            KWLTLPPFT+  N AA          R   G +  V +  ++ MTALKWV RCCP++PK+
Sbjct: 57   KWLTLPPFTATVNGAA--------LGRELAGVKMDVKENSTNTMTALKWVQRCCPELPKS 108

Query: 1214 LIQKLFRLRQVRRKSVDSTSADNLGAQDQESRLRRVAAKDAMNWGDTIHLPVSVHS-PAE 1038
            L+QKLFRLRQVRR S          +  +E R +RV+AK++MN GD I LP++V   P+E
Sbjct: 109  LVQKLFRLRQVRRDS----------SNVEEQRPKRVSAKESMNVGDRIFLPITVQKFPSE 158

Query: 1037 RINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVINKPPGLPVQGGIGIKQSLD 858
            ++         P  +E      E  ++HSLELYKDP I+V+NKPPG+PVQGGIGIK+SLD
Sbjct: 159  KVV------YYPSSEE------ERKFVHSLELYKDPEIVVVNKPPGMPVQGGIGIKRSLD 206

Query: 857  ALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSIFREKTFEASADATDNT 678
             LA+ Y+R++YSE PRLVHRLDRD SG+LV+GRTQ SA+ LHSIFREKTF++  +  ++ 
Sbjct: 207  ELAAKYMRHEYSEAPRLVHRLDRDCSGLLVMGRTQLSASALHSIFREKTFDSQNEDLESK 266

Query: 677  KRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITVGDNRNMPS-QHAITEYRL 501
            KRILQKKYWALVIG PRR+ G+ISAPLGK+++DNGKSERIT+  +   PS Q+A+TEYR+
Sbjct: 267  KRILQKKYWALVIGCPRRSGGIISAPLGKLVLDNGKSERITIMSDVRAPSAQYAVTEYRI 326

Query: 500  VQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKGLPWTNPTER 321
            + S  +G TW+ELSPLTGRKHQLRVHCAE LGTPIVGDYKYGWQAH+  K LP       
Sbjct: 327  IGSSEKGYTWLELSPLTGRKHQLRVHCAEALGTPIVGDYKYGWQAHRKLKHLPLPTSVLN 386

Query: 320  SAEKLP--KMPSFVLDSKTGSISEKEPHLHLHCRQMIFPDVHMALQHVHXXXXXXXXXXX 147
               ++P  K   F L    GSIS+K+PHLHLHC++M+ P++ +ALQ              
Sbjct: 387  LGVQIPRQKPDPFNLRLGNGSISDKQPHLHLHCKEMVLPNISLALQRAQVVSDTDLVDVE 446

Query: 146  XXDFVAPLPAHMQRSWDILNS 84
                VAPLP HMQ+SWD L+S
Sbjct: 447  SIKLVAPLPFHMQKSWDCLSS 467


>ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Fragaria
            vesca subsp. vesca]
          Length = 476

 Score =  461 bits (1186), Expect = e-127
 Identities = 244/440 (55%), Positives = 308/440 (70%), Gaps = 4/440 (0%)
 Frame = -3

Query: 1391 KWLTLPPFTSNANDAASVSKEFSRFNRRRIGEEASVSDPKSSMTALKWVTRCCPQIPKTL 1212
            KW TLPPFT   N AA + +E SR   R +  + S +   ++ TALKWVTRCCP+IP+ L
Sbjct: 51   KWFTLPPFTDTVNGAA-LGRELSRSVGRDVYAKPSAA---AATTALKWVTRCCPEIPRNL 106

Query: 1211 IQKLFRLRQVRRKSVDSTSADNLGAQDQESR-LRRVAAKDAMNWGDTIHLPVSVHSPAER 1035
            +QKLFRLRQVRR++ D          DQ  + L+RV  KD+MN GD I LP+SV    + 
Sbjct: 107  VQKLFRLRQVRREASD---------MDQSVQPLKRVGTKDSMNLGDRICLPISVKEFPDH 157

Query: 1034 INSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVINKPPGLPVQGGIGIKQSLDA 855
               ++GH            ++E  +I SL LYKDP+IIVINKPPGLPVQGGIGIK+SLD 
Sbjct: 158  -KQKEGH----------CSEEEAEFIRSLVLYKDPAIIVINKPPGLPVQGGIGIKRSLDE 206

Query: 854  LASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSIFREKTFEASADATDNTK 675
            LA+T L YD S+PPRLVHRLDRD SG+LV+GRTQTSAT+LHS+FREKTF AS D   + K
Sbjct: 207  LAATCLSYDLSQPPRLVHRLDRDCSGILVMGRTQTSATVLHSVFREKTFGASDDVIKHAK 266

Query: 674  RILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITVGDNRN-MPSQHAITEYRLV 498
             ILQ++Y ALVIG+PR+  GLIS PLGKV++DNGKS+RIT+ +    +PSQHAIT+Y+++
Sbjct: 267  SILQRRYLALVIGSPRQQEGLISVPLGKVVVDNGKSDRITILNKAQCLPSQHAITKYKVI 326

Query: 497  QSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKGLPWTNPTERS 318
             S   G TW+EL PLTGRKHQLRVHCAEVLGTPIVGDYKYGW+ HK+WK + W+     S
Sbjct: 327  GSSCPGFTWLELIPLTGRKHQLRVHCAEVLGTPIVGDYKYGWRTHKDWKPVAWSKTECHS 386

Query: 317  AEKLPKMPS--FVLDSKTGSISEKEPHLHLHCRQMIFPDVHMALQHVHXXXXXXXXXXXX 144
             E+  K  +  F L+  +GSI EK   LHLH +QM+ P+V +ALQ+V             
Sbjct: 387  NEERSKRKNLPFDLNMDSGSIDEKNLRLHLHSKQMVLPNVSLALQNVKLHAECDLSGLES 446

Query: 143  XDFVAPLPAHMQRSWDILNS 84
             + VAP+P++MQ+SWDI NS
Sbjct: 447  IELVAPMPSYMQKSWDITNS 466


>ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Solanum
            lycopersicum]
          Length = 467

 Score =  459 bits (1180), Expect = e-126
 Identities = 240/441 (54%), Positives = 305/441 (69%), Gaps = 5/441 (1%)
 Frame = -3

Query: 1391 KWLTLPPFTSNANDAASVSKEFSRFNRRRIGEEASVSDPKSS-MTALKWVTRCCPQIPKT 1215
            KWLTLPPFT+  N AA          R   G +  V++  ++ MTALKWV RCCP++PK+
Sbjct: 57   KWLTLPPFTAAVNGAA--------LGRELAGVKMDVNENSTNTMTALKWVQRCCPELPKS 108

Query: 1214 LIQKLFRLRQVRRKSVDSTSADNLGAQDQESRLRRVAAKDAMNWGDTIHLPVSVHS-PAE 1038
            L+QKLFRLRQVRR S          +  +E R +RV+AK++MN GD I LP++V   P+E
Sbjct: 109  LVQKLFRLRQVRRDS----------SNVEEQRPKRVSAKESMNVGDRIFLPITVQKFPSE 158

Query: 1037 RINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVINKPPGLPVQGGIGIKQSLD 858
            ++         P  +E      E  ++HSLELYKD  IIV+NKPPG+PVQGGIGIK+SLD
Sbjct: 159  KVV------YYPSSEE------ERKFVHSLELYKDAEIIVVNKPPGMPVQGGIGIKRSLD 206

Query: 857  ALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSIFREKTFEASADATDNT 678
             LA+ Y+ + YSE PRLVHRLDRD SG+LV+GRTQ SA+ LHSIFREKTF++  +  ++ 
Sbjct: 207  ELAAKYMSHQYSEAPRLVHRLDRDCSGLLVMGRTQLSASALHSIFREKTFDSQNEDLESK 266

Query: 677  KRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITV-GDNRNMPSQHAITEYRL 501
            KRILQKKYWALVIG PRR+ G+ISAPLGK+++DNGKSERIT+  D R   +Q+A+TEYR+
Sbjct: 267  KRILQKKYWALVIGCPRRSGGIISAPLGKLVLDNGKSERITIMSDVREPSAQYAVTEYRI 326

Query: 500  VQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKGLPWTNPTER 321
            + S  +G TW+ELSPLTGRKHQLRVHCAE LGTPIVGDYKYGWQAH+  K LP       
Sbjct: 327  IGSSEKGYTWLELSPLTGRKHQLRVHCAEALGTPIVGDYKYGWQAHRKLKHLPLPTSVLN 386

Query: 320  SAEKLP--KMPSFVLDSKTGSISEKEPHLHLHCRQMIFPDVHMALQHVHXXXXXXXXXXX 147
               ++P  K   F L    GSIS+K+PHLHLHC++M+ P++ +ALQ              
Sbjct: 387  LVVEIPRQKPDPFNLRLGNGSISDKQPHLHLHCKEMVLPNISLALQRAQVVSDADLVDVE 446

Query: 146  XXDFVAPLPAHMQRSWDILNS 84
                VAPLP HMQ+SWD L++
Sbjct: 447  SIKLVAPLPFHMQKSWDCLSA 467


>ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [Amborella trichopoda]
            gi|548850328|gb|ERN08832.1| hypothetical protein
            AMTR_s00015p00025410 [Amborella trichopoda]
          Length = 457

 Score =  446 bits (1148), Expect = e-122
 Identities = 236/438 (53%), Positives = 299/438 (68%), Gaps = 2/438 (0%)
 Frame = -3

Query: 1391 KWLTLPPFTSNANDAASVSKEFSRFNRRRIGEEASVSDPKSSMTALKWVTRCCPQIPKTL 1212
            KW TLP F       AS+S   S     +            S TALKWV RCCPQ+P++L
Sbjct: 48   KWFTLPSFPG-----ASLSPSISTAKTAKA----------PSTTALKWVLRCCPQVPRSL 92

Query: 1211 IQKLFRLRQVRRKSVDSTSADNLGAQDQESRLRRVAAKDAMNWGDTIHLPVSVHSPAERI 1032
            IQKLFRLRQVR++S++   A  L  Q Q  +++RV AKD +N GD I LP++V+   E  
Sbjct: 93   IQKLFRLRQVRKESLNPAIASCLHKQAQYQQIKRVFAKDTLNSGDRIFLPITVNPAVE-- 150

Query: 1031 NSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVINKPPGLPVQGGIGIKQSLDAL 852
                      D   C  ++ E  YI SLE+YKD +I+V+NKPPGLPVQGG G+K SLD L
Sbjct: 151  --------VEDDYICNKEEME--YIRSLEVYKDAAIVVVNKPPGLPVQGGTGVKLSLDVL 200

Query: 851  ASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSIFREKTFEASADA-TDNTK 675
             ++ L+YDYSE PRLVHRLD+DSSG+LV+GRTQ S T+LHSIFR+KT  AS +    N+K
Sbjct: 201  VASSLKYDYSEVPRLVHRLDQDSSGILVMGRTQESTTLLHSIFRDKTCGASFNVDIKNSK 260

Query: 674  RILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITVG-DNRNMPSQHAITEYRLV 498
             IL++KYWALVIG P+ + GLISAPL K+++D+GKSERITV  D++N  ++HAITEYR++
Sbjct: 261  IILKRKYWALVIGNPQPSEGLISAPLSKLLLDDGKSERITVSEDSKNKSARHAITEYRVL 320

Query: 497  QSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKGLPWTNPTERS 318
            +S   G TW+EL P TGRKHQLRVHCAEVLGTPI+GDYKYGW AH+ WK      PT + 
Sbjct: 321  RSSGHGFTWLELYPRTGRKHQLRVHCAEVLGTPILGDYKYGWNAHRKWKPF----PTLKF 376

Query: 317  AEKLPKMPSFVLDSKTGSISEKEPHLHLHCRQMIFPDVHMALQHVHXXXXXXXXXXXXXD 138
             E+L +   F LD + GS+S+K+P LHLHCRQM  P++ +A QH+H             D
Sbjct: 377  EERLNRKAPFGLDLEGGSVSDKKPRLHLHCRQMTLPNMSLAFQHLHEQSVDDLSKLEKLD 436

Query: 137  FVAPLPAHMQRSWDILNS 84
             VAPLP HM+RSWDILNS
Sbjct: 437  LVAPLPLHMRRSWDILNS 454


>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
            sativus]
          Length = 471

 Score =  446 bits (1148), Expect = e-122
 Identities = 236/439 (53%), Positives = 313/439 (71%), Gaps = 4/439 (0%)
 Frame = -3

Query: 1391 KWLTLPPFTSNANDAASVSKEFSRFNRRRIGEEASVSDPKSSMTALKWVTRCCPQIPKTL 1212
            +W TLPP+T+  N +   ++  +       G +A +    +++TALKWV RCCP++P++L
Sbjct: 59   RWFTLPPYTATVNGSILGNRIMNG------GGQAELGASTAAITALKWVIRCCPELPRSL 112

Query: 1211 IQKLFRLRQVRR-KSVDSTSADNLGAQDQESRLRRVAAKDAMNWGDTIHLPVSVHSPAER 1035
            +QKLFRLR+VRR  S+   S  NL A+DQ   L+RVAAKD +N GD I LP+SV      
Sbjct: 113  VQKLFRLRKVRRGSSMIENSEYNLEARDQ---LKRVAAKDILNVGDQIFLPMSVQV---- 165

Query: 1034 INSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVINKPPGLPVQGGIGIKQSLDA 855
                     + +K     + +E T++HSL L+KDP+I+VINKPPGLPVQGGIG+K+SLD 
Sbjct: 166  --------FSTEKTRDYCNKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDE 217

Query: 854  LASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSIFREKTFEAS--ADATDN 681
            LA++ L Y YSEPPRLVHRLDRDSSG+L++GRT TS ++LHS+FREKTFEAS  A+  D+
Sbjct: 218  LAASCLSYGYSEPPRLVHRLDRDSSGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDS 277

Query: 680  TKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITVGDNRN-MPSQHAITEYR 504
             K+IL K+YWALVIG+PRR+ GLI+APLGK+++D+G+SE+I V DN   MP Q AIT+Y+
Sbjct: 278  EKKILLKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYK 337

Query: 503  LVQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKGLPWTNPTE 324
            +++S   G TW+EL PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWK  P+ +   
Sbjct: 338  VIKSH-HGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWK--PFCSNFH 394

Query: 323  RSAEKLPKMPSFVLDSKTGSISEKEPHLHLHCRQMIFPDVHMALQHVHXXXXXXXXXXXX 144
            ++  K   +P F LD ++GSI+E  P LHLHC+Q+  PDV  AL   +            
Sbjct: 395  KNQGKKQFLP-FGLDFESGSIAENSPRLHLHCKQLTLPDVSFALH--NDSLDRDCSRLEC 451

Query: 143  XDFVAPLPAHMQRSWDILN 87
             +  APLP++MQ+SWDI+N
Sbjct: 452  LELDAPLPSYMQKSWDIIN 470


>gb|EYU42699.1| hypothetical protein MIMGU_mgv1a006097mg [Mimulus guttatus]
          Length = 457

 Score =  444 bits (1141), Expect = e-122
 Identities = 239/440 (54%), Positives = 303/440 (68%), Gaps = 5/440 (1%)
 Frame = -3

Query: 1391 KWLTLPPFTSNANDAASVSKEFSRFNRRRIGEEASVSDPKSSMTALKWVTRCCPQIPKTL 1212
            +WLTLPPF  NA D  S+ K  S       G+ A      +  TALKW+ +CCP IP+ L
Sbjct: 46   QWLTLPPFNPNA-DGCSIGKRLS-------GQPAD-----AKTTALKWILKCCPHIPRCL 92

Query: 1211 IQKLFRLRQVRRKSVDSTSADNLGAQDQESRLRRVAAKDAMNWGDTIHLPVSVH--SPAE 1038
            +QKLFRLRQV    +   S++    +D+E R +R+ AKD M+ GD I LP SV   SP+ 
Sbjct: 93   VQKLFRLRQVHFLLIRKESSN---MEDKEQRPKRIGAKDLMDIGDRIFLPKSVDGTSPST 149

Query: 1037 RINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVINKPPGLPVQGGIGIKQSLD 858
               SR+             D+KE  ++ SLELYKDP+IIVINKPPGLPVQGGIGIK+SLD
Sbjct: 150  TAESRNF-----------FDEKEMEFVRSLELYKDPAIIVINKPPGLPVQGGIGIKRSLD 198

Query: 857  ALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSIFREKTFEASADATDNT 678
             LA+ YL++D++E PRLVHRLDRDSSG+LV+GRTQ S TILHS+FREKTF AS +   N 
Sbjct: 199  ELAAKYLKFDFTESPRLVHRLDRDSSGILVMGRTQLSTTILHSVFREKTFGASNNVCGN- 257

Query: 677  KRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITVGDNRN-MPSQHAITEYRL 501
            K+ILQKKYWALVIG+PRR  GLIS PL KV++DNGKSERITV +N N + +QHA+TEYR+
Sbjct: 258  KKILQKKYWALVIGSPRRREGLISVPLVKVVLDNGKSERITVAENNNTLSAQHAVTEYRV 317

Query: 500  VQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKGLPWTNPTER 321
            + S  +G +W+ELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHK       +    +
Sbjct: 318  IASSSRGYSWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKKLGHHLDSVSDPK 377

Query: 320  SAEKLPKM--PSFVLDSKTGSISEKEPHLHLHCRQMIFPDVHMALQHVHXXXXXXXXXXX 147
              +++ K+   +F L+ ++GSIS+K+  LHLHC++M  PD+  AL++             
Sbjct: 378  WGDEISKVKNDTFALELESGSISDKQFRLHLHCKEMSLPDITQALKYASINSDLDTAEMK 437

Query: 146  XXDFVAPLPAHMQRSWDILN 87
                 A LPAHMQRSW +L+
Sbjct: 438  SITLEACLPAHMQRSWSLLS 457


>ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
            sativus]
          Length = 466

 Score =  442 bits (1138), Expect = e-121
 Identities = 231/439 (52%), Positives = 310/439 (70%), Gaps = 3/439 (0%)
 Frame = -3

Query: 1391 KWLTLPPFTSNANDAASVSKEFSRFNRRRIGEEASVSDPKSSMTALKWVTRCCPQIPKTL 1212
            +W TLPP+T+  N +   ++  +       G +A +    +++TALKWV RCCP++P++L
Sbjct: 59   RWFTLPPYTATVNGSILGNRIMNG------GGQAELGASTAAITALKWVIRCCPELPRSL 112

Query: 1211 IQKLFRLRQVRRKSVDSTSADNLGAQDQESRLRRVAAKDAMNWGDTIHLPVSVHSPAERI 1032
            +QKLFRLR+V R+        N+G  +   +L+RVAAKD +N GD I LP+SV       
Sbjct: 113  VQKLFRLRKVPRQL-------NVGCGNSHHQLKRVAAKDILNVGDQIFLPMSVQV----- 160

Query: 1031 NSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVINKPPGLPVQGGIGIKQSLDAL 852
                    + +K     + +E T++HSL L+KDP+I+VINKPPGLPVQGGIG+K+SLD L
Sbjct: 161  -------FSTEKTRDYCNKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDEL 213

Query: 851  ASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSIFREKTFEAS--ADATDNT 678
            A++ L Y YSEPPRLVHRLDRDSSG+L++GRT TS ++LHS+FREKTFEAS  A+  D+ 
Sbjct: 214  AASCLSYGYSEPPRLVHRLDRDSSGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSE 273

Query: 677  KRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITVGDNRN-MPSQHAITEYRL 501
            K+IL K+YWALVIG+PRR+ GLI+APLGK+++D+G+SE+I V DN   MP Q AIT+Y++
Sbjct: 274  KKILLKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKV 333

Query: 500  VQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKGLPWTNPTER 321
            ++S   G TW+EL PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWK  P+ +   +
Sbjct: 334  IKSH-HGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWK--PFCSNFHK 390

Query: 320  SAEKLPKMPSFVLDSKTGSISEKEPHLHLHCRQMIFPDVHMALQHVHXXXXXXXXXXXXX 141
            +  K   +P F LD ++GSI+E  P LHLHC+Q+  PDV  AL   +             
Sbjct: 391  NQGKKQFLP-FGLDFESGSIAENNPRLHLHCKQLTLPDVSFALH--NDSLDRDCSRLECL 447

Query: 140  DFVAPLPAHMQRSWDILNS 84
            +  APLP++MQ+SWDI+NS
Sbjct: 448  ELDAPLPSYMQKSWDIINS 466


>ref|XP_004511295.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cicer
            arietinum]
          Length = 458

 Score =  436 bits (1122), Expect = e-119
 Identities = 241/443 (54%), Positives = 294/443 (66%), Gaps = 5/443 (1%)
 Frame = -3

Query: 1397 DGKWLTLPPFTSNANDAASVSKEFSRFNRRRIGEEASVSDPKSSMTALKWVTRCCPQIPK 1218
            D KWLTLP  ++    +++               E S S   SS TALKWVT+CCPQIPK
Sbjct: 53   DAKWLTLPAVSATVKSSSN---------------EVSSS---SSTTALKWVTQCCPQIPK 94

Query: 1217 TLIQKLFRLRQVRRKSVDSTSADNLGAQDQESRLRRVAAKDAMNWGDTIHLPVSVHSPAE 1038
            TL+ KLFRLRQVR        AD         +L+RV AKD +N GD I LP SV    +
Sbjct: 95   TLVHKLFRLRQVRMLPNSPLIAD---------KLKRVGAKDTLNSGDRIFLPNSVKQQHQ 145

Query: 1037 RINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVINKPPGLPVQGGIGIKQSLD 858
                   H+ TP KQ   +  K+  ++ SL +YKDP+ +V+NKPPG+PVQGGI IK SLD
Sbjct: 146  -------HQQTP-KQPLTLTPKQIKFMRSLVIYKDPATVVLNKPPGMPVQGGINIKWSLD 197

Query: 857  ALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSIFREKTFEASADATDNT 678
            ALA++ L YDYS+PPRLVHRLDRD SG+LV+GRTQTS  +LHSIFR+KT  AS D  D  
Sbjct: 198  ALAASSLNYDYSQPPRLVHRLDRDCSGILVMGRTQTSTVVLHSIFRDKTSRAS-DHNDTE 256

Query: 677  KRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITVGDNRNM-PSQHAITEYRL 501
            KRILQ++YWALVIG PRR+ GLI++PLGKV++DNGKS+RIT+ +N  +  SQHA+TEYR+
Sbjct: 257  KRILQRRYWALVIGRPRRSGGLITSPLGKVVVDNGKSDRITIVNNSTLVSSQHAVTEYRV 316

Query: 500  VQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKGLPWTNPTER 321
            + S   G TW+ELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHK W      N  E 
Sbjct: 317  LGSSSDGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKKWGHFDLCN-LED 375

Query: 320  SAEKLPKMPS--FVLDSKTGSISEKEPHLHLHCRQMIFPDVHMALQHVH--XXXXXXXXX 153
            S E+L K  +  F L+   GSIS+K P LHLHC+Q+I P++  ALQ V            
Sbjct: 376  STEELLKEETLPFGLNLNKGSISDKHPRLHLHCKQIILPNISQALQDVQSLSASNCDLSV 435

Query: 152  XXXXDFVAPLPAHMQRSWDILNS 84
                   A LP +MQRSWD+ NS
Sbjct: 436  VEALKLEAELPPYMQRSWDVTNS 458


>ref|XP_006486999.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X1 [Citrus sinensis] gi|568867349|ref|XP_006487000.1|
            PREDICTED: RNA pseudouridine synthase 4,
            mitochondrial-like isoform X2 [Citrus sinensis]
          Length = 362

 Score =  424 bits (1090), Expect = e-116
 Identities = 215/371 (57%), Positives = 274/371 (73%), Gaps = 3/371 (0%)
 Frame = -3

Query: 1187 QVRRKSVDSTSADNLGAQDQESRLRRVAAKDAMNWGDTIHLPVSVHSPAERINSRDGHRL 1008
            QVRR+S    S+ N G  +QE +L+RVAAKD++  GD I LP+S+     R         
Sbjct: 5    QVRRESPSLDSSANEG-HEQEIKLKRVAAKDSLKLGDRIFLPISIQESPSR--------- 54

Query: 1007 TPDKQECRIDDKEGTYIHSLELYKDPSIIVINKPPGLPVQGGIGIKQSLDALASTYLRYD 828
               K++C   ++E  +I SLELYKD +IIVINKP G+PVQGGIGI++S+D LA+T L YD
Sbjct: 55   ---KEKCPCTEEEVEFIQSLELYKDSAIIVINKPHGMPVQGGIGIRRSIDELAATCLTYD 111

Query: 827  YSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSIFREKTFEASADATDNTKRILQKKYWA 648
            YSEPPRLVHRLDRDSSG+LV+GRTQTSAT+LHSIFREKTF AS +  DN K+ILQ+ YWA
Sbjct: 112  YSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKKILQRWYWA 171

Query: 647  LVIGTPRRASGLISAPLGKVIMDNGKSERITVGDN-RNMPSQHAITEYRLVQSPIQGLTW 471
            LV+GTPR + G+ISAPLGKV++DNGKS+RITV +N + M +QHA+T Y++++    G TW
Sbjct: 172  LVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTW 231

Query: 470  IELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKGLPWTNPTERSAEKLPKMPS 291
            ++LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ H+ WK    ++ ++ S E++PK  +
Sbjct: 232  LKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKT 291

Query: 290  --FVLDSKTGSISEKEPHLHLHCRQMIFPDVHMALQHVHXXXXXXXXXXXXXDFVAPLPA 117
              F LD ++GSI EK+P LHLHC++M  P+V  A+Q V                VAPLP+
Sbjct: 292  LHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPS 351

Query: 116  HMQRSWDILNS 84
            HMQRSWD+LNS
Sbjct: 352  HMQRSWDVLNS 362


>ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X1 [Glycine max]
          Length = 427

 Score =  423 bits (1087), Expect = e-115
 Identities = 231/441 (52%), Positives = 289/441 (65%), Gaps = 4/441 (0%)
 Frame = -3

Query: 1397 DGKWLTLPPFTSNANDAASVSKEFSRFNRRRIGEEASVSDPKSSMTALKWVTRCCPQIPK 1218
            + KWLTLPP ++++    S S E ++ +              +  TALKWV RCCP +P+
Sbjct: 28   EDKWLTLPPVSASS----SASVELNQLS-------------STPTTALKWVVRCCPHLPR 70

Query: 1217 TLIQKLFRLRQVRRKSVDSTSADNLGAQDQESRLRRVAAKDAMNWGDTIHLPVSVHSPAE 1038
             L+ KLFRLRQVR                Q+   +RVAAKD +N GD I LP SV     
Sbjct: 71   ALVHKLFRLRQVRIHPATVI---------QQQTFKRVAAKDTLNTGDRILLPQSVKVKQT 121

Query: 1037 RINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVINKPPGLPVQGGIGIKQSLD 858
              +S     LTP         ++  +I +L +YKDP+I+V+NKPPG+PVQGGI IK+SLD
Sbjct: 122  PTHSH----LTP---------QQINFIRTLVIYKDPAILVLNKPPGMPVQGGINIKRSLD 168

Query: 857  ALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSIFREKTFEASADATDNT 678
            A+A+  L Y YS+PPRLVHRLDRD SG+LV+GRT TS T+LHSIFREKT  AS D     
Sbjct: 169  AVAAASLNYGYSQPPRLVHRLDRDCSGILVMGRTHTSTTVLHSIFREKTSRAS-DDIGKE 227

Query: 677  KRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITVGDNRN-MPSQHAITEYRL 501
            KRILQ++YWALV+G PRR  GL++A LGKV++DNG+S+RIT+ DN   M SQHAITEYR+
Sbjct: 228  KRILQRRYWALVLGCPRRPKGLVTASLGKVVVDNGRSDRITIVDNSTLMSSQHAITEYRV 287

Query: 500  VQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKGLPWTNPTER 321
            + S  QG TW+EL+PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH+ W      N  E 
Sbjct: 288  IASSSQGYTWLELTPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLPN-VED 346

Query: 320  SAEKL---PKMPSFVLDSKTGSISEKEPHLHLHCRQMIFPDVHMALQHVHXXXXXXXXXX 150
            S E+L    K+P F L+   GSISE  P LHLHC+QM+ P++  ALQ+V           
Sbjct: 347  SREELLNEEKLP-FGLNLNKGSISENHPRLHLHCKQMVLPNISQALQNVQSASSCDLSLV 405

Query: 149  XXXDFVAPLPAHMQRSWDILN 87
               + VA LP +MQRSWD+ N
Sbjct: 406  EELELVADLPPYMQRSWDVTN 426


>ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatula]
            gi|355501934|gb|AES83137.1| RNA pseudourine synthase
            [Medicago truncatula]
          Length = 430

 Score =  423 bits (1087), Expect = e-115
 Identities = 225/444 (50%), Positives = 288/444 (64%), Gaps = 6/444 (1%)
 Frame = -3

Query: 1397 DGKWLTLPPFTSNANDAASVSKEFSRFNRRRIGEEASVSDPKSSMTALKWVTRCCPQIPK 1218
            DGKWLTLPP ++  N ++S                       +S  ALKWV RCCP++PK
Sbjct: 26   DGKWLTLPPVSTTVNTSSS----------------------STSTPALKWVIRCCPELPK 63

Query: 1217 TLIQKLFRLRQVRRKSVDSTSADNLGAQDQESRLRRVAAKDAMNWGDTIHLPVSVHSPAE 1038
            TLI KLFRL+QVR           L  Q  +++ +RV  KD +N GD I LP SV     
Sbjct: 64   TLIHKLFRLKQVRM----------LPRQQDDNKFKRVTPKDTLNSGDRIFLPNSVKQQIP 113

Query: 1037 RINSRDGHRLTPDKQEC--RIDDKEGTYIHSLELYKDPSIIVINKPPGLPVQGGIGIKQS 864
                      TP K E    +  K+  +I SL +YKDP I+V+NKPPG+PVQGGI IK S
Sbjct: 114  LTP-------TPPKHESPLTLTAKQINFIRSLVIYKDPHILVLNKPPGMPVQGGINIKLS 166

Query: 863  LDALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSIFREKTFEASADATD 684
            LDA+A+  L YDYS+PPRLVHRLDRD SG+LV+GRT+TS  +LHSIFREKT  AS +  D
Sbjct: 167  LDAVAAQSLNYDYSQPPRLVHRLDRDCSGILVMGRTKTSTALLHSIFREKTSRASNEEND 226

Query: 683  NTKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITVGDNRN-MPSQHAITEY 507
              K ILQ++YWALV+G PRR+ G+++APLGKV++DNGKS+RIT+ DN   + SQHA+TEY
Sbjct: 227  TEKIILQRRYWALVLGCPRRSGGVVNAPLGKVVVDNGKSDRITIVDNSALLSSQHAVTEY 286

Query: 506  RLVQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKGLPWTNPT 327
            R++ S   G TW+ELSPLTGRKHQLRVHCAEVLGTPIVGDYKYG QAHK W    ++N  
Sbjct: 287  RVISSSSHGFTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHKKWGQFDFSNLE 346

Query: 326  ERSAEKLPKMP-SFVLDSKTGSISEKEPHLHLHCRQMIFPDVHMALQHVH--XXXXXXXX 156
            + + E L +    F L+   GSIS+K P LHLHC+Q++ P++  ALQ+V           
Sbjct: 347  DSTEEHLKEEALPFGLNLNKGSISDKHPRLHLHCKQIVLPNISQALQNVQSVSDSSYDLS 406

Query: 155  XXXXXDFVAPLPAHMQRSWDILNS 84
                 +  A LP +M++SW++ NS
Sbjct: 407  AVESLELEADLPPYMKKSWEVTNS 430


>ref|XP_006573909.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X2 [Glycine max]
          Length = 429

 Score =  422 bits (1085), Expect = e-115
 Identities = 232/441 (52%), Positives = 289/441 (65%), Gaps = 4/441 (0%)
 Frame = -3

Query: 1397 DGKWLTLPPFTSNANDAASVSKEFSRFNRRRIGEEASVSDPKSSMTALKWVTRCCPQIPK 1218
            + KWLTLPP ++++    S S E ++ +              +  TALKWV RCCP +P+
Sbjct: 28   EDKWLTLPPVSASS----SASVELNQLS-------------STPTTALKWVVRCCPHLPR 70

Query: 1217 TLIQKLFRLRQVRRKSVDSTSADNLGAQDQESRLRRVAAKDAMNWGDTIHLPVSVHSPAE 1038
             L+ KLFRLRQVR              Q Q  +  RVAAKD +N GD I LP SV     
Sbjct: 71   ALVHKLFRLRQVRIHPATVI-------QQQTFKRVRVAAKDTLNTGDRILLPQSVKVKQT 123

Query: 1037 RINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVINKPPGLPVQGGIGIKQSLD 858
              +S     LTP         ++  +I +L +YKDP+I+V+NKPPG+PVQGGI IK+SLD
Sbjct: 124  PTHSH----LTP---------QQINFIRTLVIYKDPAILVLNKPPGMPVQGGINIKRSLD 170

Query: 857  ALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSIFREKTFEASADATDNT 678
            A+A+  L Y YS+PPRLVHRLDRD SG+LV+GRT TS T+LHSIFREKT  AS D     
Sbjct: 171  AVAAASLNYGYSQPPRLVHRLDRDCSGILVMGRTHTSTTVLHSIFREKTSRAS-DDIGKE 229

Query: 677  KRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITVGDNRN-MPSQHAITEYRL 501
            KRILQ++YWALV+G PRR  GL++A LGKV++DNG+S+RIT+ DN   M SQHAITEYR+
Sbjct: 230  KRILQRRYWALVLGCPRRPKGLVTASLGKVVVDNGRSDRITIVDNSTLMSSQHAITEYRV 289

Query: 500  VQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKGLPWTNPTER 321
            + S  QG TW+EL+PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH+ W      N  E 
Sbjct: 290  IASSSQGYTWLELTPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLPN-VED 348

Query: 320  SAEKL---PKMPSFVLDSKTGSISEKEPHLHLHCRQMIFPDVHMALQHVHXXXXXXXXXX 150
            S E+L    K+P F L+   GSISE  P LHLHC+QM+ P++  ALQ+V           
Sbjct: 349  SREELLNEEKLP-FGLNLNKGSISENHPRLHLHCKQMVLPNISQALQNVQSASSCDLSLV 407

Query: 149  XXXDFVAPLPAHMQRSWDILN 87
               + VA LP +MQRSWD+ N
Sbjct: 408  EELELVADLPPYMQRSWDVTN 428