BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver25_contig00012205
         (2204 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28010.3| unnamed protein product [Vitis vinifera]              699   0.0  
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu...   691   0.0  
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu...   691   0.0  
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   690   0.0  
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu...   685   0.0  
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr...   651   0.0  
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr...   650   0.0  
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr...   650   0.0  
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A...   641   0.0  
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme...   635   e-179
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme...   625   e-176
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps...   619   e-174
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...   613   e-172
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid...   606   e-170
gb|AHL27588.1| RNA-dependent RNA polymerase 5 [Salvia miltiorrhiza]   603   e-169
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme...   601   e-169
ref|XP_006296898.1| hypothetical protein CARUB_v10012890mg [Caps...   600   e-169
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme...   596   e-167
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid...   595   e-167
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme...   593   e-167

>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  699 bits (1805), Expect = 0.0
 Identities = 371/722 (51%), Positives = 487/722 (67%), Gaps = 1/722 (0%)
 Frame = +3

Query: 42   RKPKKPKTSGHLQALNQLDFKKQFLILSYCGKKKLHDVISVDTIKSMQHMQMSCFEPQLW 221
            +K ++  +S  L AL +L+F+K FLILSY G K+  D++S + I  ++++ M  FE ++W
Sbjct: 91   KKARRQASSPQLVALGELEFRKAFLILSYIGDKRPEDLLSAEEILKLKNLPMGVFETEVW 150

Query: 222  RLLGRHCIQERDRAKGIDWGSEKPFMYHCHVDPDGNYTFKGPYLQAGQTHLQRVLGDENV 401
              LGR  I+E DR +  DW S+K  +YHCHV PDG+Y FKGPYL   +THLQRVLGDEN+
Sbjct: 151  NNLGRKFIKEEDRQRSFDWDSDKTHIYHCHVSPDGSYRFKGPYLNKTRTHLQRVLGDENI 210

Query: 402  LVVKFSGQMVEGAGRNSLIRCNSTTSPHQPNRNEGVGIYNSNSAYHRIREEGILVGLRRY 581
            L+VKF+  + +     S + C++                +SN++Y++I  EGI VGLR+Y
Sbjct: 211  LLVKFAEDVTD----RSSLNCST----------------DSNASYNKIAREGIFVGLRQY 250

Query: 582  CFFVFXXXXXXXXXXXXXSPTSSSVKCYFVCIDCVDSDDPLTIAPSILFCKSVSEARSLF 761
             FFVF             +PTSS VKCYFV ++            S L  K+V EAR +F
Sbjct: 251  RFFVFKDGGKEEKKK---NPTSS-VKCYFVFMES-----------SALSGKTVHEARCIF 295

Query: 762  MHVHNVSSIAKYMARFSLILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRI 941
            MH H VSS+AKYMARFSLILSKT+KLD+D ++V ++ I+D   RD+DG +VY+ED +P I
Sbjct: 296  MHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPLI 355

Query: 942  HTDGTGFISQDLALKCPRNIFKGKCSSQSDLEKILLHQIAEEKSLGLEKSIKSYIGDPPL 1121
             TDGTGFIS+DLAL+CP N+ +GK  +  + +                          PL
Sbjct: 356  LTDGTGFISEDLALRCPNNLCRGKYMNNGNSD--------------------------PL 389

Query: 1122 LIQFRMFHNGSAVKGTALVNKKLPRNTIQVRPSMIKVRSDLGHVNDEHMTNSFEVVATSM 1301
            LIQ R+F+NG AVKGT L+N+KLP  TIQ+RPSMIKV +D   ++D    NS E+  TS 
Sbjct: 390  LIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETD-PKLSDTQTVNSVEINGTSN 448

Query: 1302 KPKRTNLSKYLIALLSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFL 1481
            +P+R+ LSKYLIALLSYGGVP+ YF+ LL DALED     + KRAALR +L +GEMDD +
Sbjct: 449  QPRRSYLSKYLIALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSI 508

Query: 1482 VAKMILCGIPLEESFLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVC 1661
            V +MIL GIP++E FL   LS ++  E K L+ GKLP+ND +YLMGTADPTG LK  +VC
Sbjct: 509  VTRMILSGIPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVC 568

Query: 1662 VILESGQVSGDILVYKHPGLHFGDIHVLEATYVQELQNYVGDAKYGIFFPIVGLRSIADE 1841
            +IL+ GQV G +LVYKHPGLHFGDIHVL ATYV+ L+ +VG+AKY IFFPI G RS+ADE
Sbjct: 569  IILDHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADE 628

Query: 1842 IANSDLDGDMYWVCRNTQLLNWFRPSTPWTQKHFSKNVPQPKPADFSDEDRLEHYLFEKF 2021
            +ANSD DGDMYWV RN QLL +FR S PW +K  +++VP  +P DFS  D LEH LF+ F
Sbjct: 629  MANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFS-PDELEHELFQLF 687

Query: 2022 LAARF-SSNNVGVAAICWLGLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAKSG 2198
            L  RF +S+ +G+AA  WL  MD  LTL +  +++ + ++ K+L LTDIYYDALD  KSG
Sbjct: 688  LTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSG 747

Query: 2199 KK 2204
             K
Sbjct: 748  MK 749


>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334279|gb|ERP58266.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 899

 Score =  691 bits (1784), Expect = 0.0
 Identities = 370/730 (50%), Positives = 497/730 (68%), Gaps = 3/730 (0%)
 Frame = +3

Query: 18   TGTSLEEQRKPKKPKTSGHLQALNQLDFKKQFLILSYCGKKKLHDVISVDTIKSMQHMQM 197
            + T   ++++  +  TS HL AL +L+F+K FLILSY G K L +V+SVD I+  + + M
Sbjct: 20   SSTMDSQRQRGNESTTSQHLVALGELEFRKAFLILSYLGGKNLEEVVSVDQIRGYKDLPM 79

Query: 198  SCFEPQLWRLLG--RHCIQERDRAKGIDWGSEKPFMYHCHVDPDGNYTFKGPYLQAGQTH 371
              FE ++W   G  R  I+E DR K +DW S K  +YHCHVDPDG+Y FKGPYL   +  
Sbjct: 80   RTFESKIWEAFGCRRDYIKEEDRVKYLDWDSGKTHIYHCHVDPDGSYRFKGPYLSKLRNV 139

Query: 372  LQRVLGDENVLVVKFSGQMVEGAGRNSLIRCNSTTSPHQPNRNEGVGIYNSNSAYHRIRE 551
            LQR LGD+N+L+VKF G++ +     S                    + +  S Y+++  
Sbjct: 140  LQRTLGDDNILMVKF-GEVKDDRDSGSR------------------SLDDYFSKYNKVLG 180

Query: 552  EGILVGLRRYCFFVFXXXXXXXXXXXXXSPTSSSVKCYFVCIDCVDSDDPLTIAPSILFC 731
            EGI VGLR Y FFVF              PT+S VKC+FV ++ V S D      +IL  
Sbjct: 181  EGIHVGLRCYRFFVF---KDGGKEEKKKDPTTSPVKCFFVRMESVASIDN---QDNILSG 234

Query: 732  KSVSEARSLFMHVHNVSSIAKYMARFSLILSKTIKLDIDFASVRVEEIEDIACRDQDGCI 911
            K++ +ARS+FMHV N+SS++ YMARFSLILSKT+ L++D + V ++ I D  CRD+DG +
Sbjct: 235  KTIRQARSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDLSCVDIKTIADEPCRDKDGNV 294

Query: 912  VYNEDGEPRIHTDGTGFISQDLALKCPRNIFKGKCSSQSDLEKILLHQIAEEKSLGLEKS 1091
            VY  DG+P IHTDGTGFIS DLALKCP+N FKG C   S++E++ +H         +E+ 
Sbjct: 295  VYGTDGKPLIHTDGTGFISHDLALKCPKNQFKGTCLRASNIERLNVHNEV------MEQY 348

Query: 1092 IKSYIGDPPLLIQFRMFHNGSAVKGTALVNKKLPRNTIQVRPSMIKVRSDLGHVNDEHMT 1271
             +   GDPPLLIQFR+F+NG AVKGT LVNKKL   T+ +RPSMIKV +D   ++     
Sbjct: 349  PECRNGDPPLLIQFRLFNNGRAVKGTFLVNKKLTHQTLHIRPSMIKVETD-PKLSSTFSK 407

Query: 1272 NSFEVVATSMKPKRTNLSKYLIALLSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAA 1451
            NS E+V TS +PK+T LSK LIALLSYGGVP+ +F+ ++ +ALED     ++K AALR A
Sbjct: 408  NSLEIVGTSSRPKKTFLSKNLIALLSYGGVPEEFFMGIVNNALEDAHGILSNKNAALRVA 467

Query: 1452 LHYGEMDDFLVAKMILCGIPLEESFLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADP 1631
            L+YG+MDD +VA MI CGIPLEE +L+ RLS+LM+ E KSLK GK+P+ +SYYLMGTADP
Sbjct: 468  LNYGDMDDNIVATMIGCGIPLEEPYLQCRLSILMKEEKKSLKGGKIPVPESYYLMGTADP 527

Query: 1632 TGILKPHQVCVILESGQVSGDILVYKHPGLHFGDIHVLEATYVQELQNYVGDAKYGIFFP 1811
            TG+L+  +VC+IL+ GQ+SG++L+Y++PGLHFGDIH+L+ATYV+EL+++VG+AKY IFFP
Sbjct: 528  TGLLESDEVCIILDCGQISGEVLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFP 587

Query: 1812 IVGLRSIADEIANSDLDGDMYWVCRNTQLLNWFRPSTPWTQKHFSKNVPQPKPADFSDED 1991
              G RS+ADE++  D DGDM++V RN QLL  F+ + PWT    + NVP  KP++FSDE+
Sbjct: 588  CKGPRSLADEMSGGDFDGDMFFVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDEE 647

Query: 1992 RLEHYLFEKFLAARFS-SNNVGVAAICWLGLMDTRLTLDESNAEKIKEVEDKLLHLTDIY 2168
             LE  LF+ FL  RF  S+ VGVAA  WL +MD  LTL    AE+I  +++ +  L DIY
Sbjct: 648  -LEVELFKLFLRNRFQPSSTVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIY 706

Query: 2169 YDALDVAKSG 2198
            YDALD  K G
Sbjct: 707  YDALDAPKKG 716


>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334280|gb|ERP58267.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 877

 Score =  691 bits (1783), Expect = 0.0
 Identities = 369/724 (50%), Positives = 495/724 (68%), Gaps = 3/724 (0%)
 Frame = +3

Query: 36   EQRKPKKPKTSGHLQALNQLDFKKQFLILSYCGKKKLHDVISVDTIKSMQHMQMSCFEPQ 215
            ++++  +  TS HL AL +L+F+K FLILSY G K L +V+SVD I+  + + M  FE +
Sbjct: 4    QRQRGNESTTSQHLVALGELEFRKAFLILSYLGGKNLEEVVSVDQIRGYKDLPMRTFESK 63

Query: 216  LWRLLG--RHCIQERDRAKGIDWGSEKPFMYHCHVDPDGNYTFKGPYLQAGQTHLQRVLG 389
            +W   G  R  I+E DR K +DW S K  +YHCHVDPDG+Y FKGPYL   +  LQR LG
Sbjct: 64   IWEAFGCRRDYIKEEDRVKYLDWDSGKTHIYHCHVDPDGSYRFKGPYLSKLRNVLQRTLG 123

Query: 390  DENVLVVKFSGQMVEGAGRNSLIRCNSTTSPHQPNRNEGVGIYNSNSAYHRIREEGILVG 569
            D+N+L+VKF G++ +     S                    + +  S Y+++  EGI VG
Sbjct: 124  DDNILMVKF-GEVKDDRDSGSR------------------SLDDYFSKYNKVLGEGIHVG 164

Query: 570  LRRYCFFVFXXXXXXXXXXXXXSPTSSSVKCYFVCIDCVDSDDPLTIAPSILFCKSVSEA 749
            LR Y FFVF              PT+S VKC+FV ++ V S D      +IL  K++ +A
Sbjct: 165  LRCYRFFVF---KDGGKEEKKKDPTTSPVKCFFVRMESVASIDN---QDNILSGKTIRQA 218

Query: 750  RSLFMHVHNVSSIAKYMARFSLILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDG 929
            RS+FMHV N+SS++ YMARFSLILSKT+ L++D + V ++ I D  CRD+DG +VY  DG
Sbjct: 219  RSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDLSCVDIKTIADEPCRDKDGNVVYGTDG 278

Query: 930  EPRIHTDGTGFISQDLALKCPRNIFKGKCSSQSDLEKILLHQIAEEKSLGLEKSIKSYIG 1109
            +P IHTDGTGFIS DLALKCP+N FKG C   S++E++ +H         +E+  +   G
Sbjct: 279  KPLIHTDGTGFISHDLALKCPKNQFKGTCLRASNIERLNVHNEV------MEQYPECRNG 332

Query: 1110 DPPLLIQFRMFHNGSAVKGTALVNKKLPRNTIQVRPSMIKVRSDLGHVNDEHMTNSFEVV 1289
            DPPLLIQFR+F+NG AVKGT LVNKKL   T+ +RPSMIKV +D   ++     NS E+V
Sbjct: 333  DPPLLIQFRLFNNGRAVKGTFLVNKKLTHQTLHIRPSMIKVETD-PKLSSTFSKNSLEIV 391

Query: 1290 ATSMKPKRTNLSKYLIALLSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEM 1469
             TS +PK+T LSK LIALLSYGGVP+ +F+ ++ +ALED     ++K AALR AL+YG+M
Sbjct: 392  GTSSRPKKTFLSKNLIALLSYGGVPEEFFMGIVNNALEDAHGILSNKNAALRVALNYGDM 451

Query: 1470 DDFLVAKMILCGIPLEESFLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKP 1649
            DD +VA MI CGIPLEE +L+ RLS+LM+ E KSLK GK+P+ +SYYLMGTADPTG+L+ 
Sbjct: 452  DDNIVATMIGCGIPLEEPYLQCRLSILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLES 511

Query: 1650 HQVCVILESGQVSGDILVYKHPGLHFGDIHVLEATYVQELQNYVGDAKYGIFFPIVGLRS 1829
             +VC+IL+ GQ+SG++L+Y++PGLHFGDIH+L+ATYV+EL+++VG+AKY IFFP  G RS
Sbjct: 512  DEVCIILDCGQISGEVLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRS 571

Query: 1830 IADEIANSDLDGDMYWVCRNTQLLNWFRPSTPWTQKHFSKNVPQPKPADFSDEDRLEHYL 2009
            +ADE++  D DGDM++V RN QLL  F+ + PWT    + NVP  KP++FSDE+ LE  L
Sbjct: 572  LADEMSGGDFDGDMFFVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDEE-LEVEL 630

Query: 2010 FEKFLAARFS-SNNVGVAAICWLGLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDV 2186
            F+ FL  RF  S+ VGVAA  WL +MD  LTL    AE+I  +++ +  L DIYYDALD 
Sbjct: 631  FKLFLRNRFQPSSTVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDA 690

Query: 2187 AKSG 2198
             K G
Sbjct: 691  PKKG 694


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
            vinifera]
          Length = 943

 Score =  690 bits (1781), Expect = 0.0
 Identities = 370/730 (50%), Positives = 490/730 (67%), Gaps = 9/730 (1%)
 Frame = +3

Query: 42   RKPKKPKTSGHLQALNQLDFKKQFLILSYCGKKKLHDVISVDTIKSMQHMQMSCFEPQLW 221
            +K ++  +S  L AL +L+F+K FLILSY G+ +  D++S + I  ++++ M  FE ++W
Sbjct: 91   KKARRQASSPQLVALGELEFRKAFLILSYIGELRPEDLLSAEEILKLKNLPMGVFETEVW 150

Query: 222  RLLGRHCIQERDRAKGIDWGSEKPFMYHCHVDPDGNYTFK--------GPYLQAGQTHLQ 377
              LGR  I+E DR +  DW S+K  +YHCHV PDG+Y FK        GPYL   +THLQ
Sbjct: 151  NNLGRKFIKEEDRQRSFDWDSDKTHIYHCHVSPDGSYRFKVCISSSLNGPYLNKTRTHLQ 210

Query: 378  RVLGDENVLVVKFSGQMVEGAGRNSLIRCNSTTSPHQPNRNEGVGIYNSNSAYHRIREEG 557
            RVLGDEN+L+VKF+  + +     S + C++                +SN++Y++I  EG
Sbjct: 211  RVLGDENILLVKFAEDVTD----RSSLNCST----------------DSNASYNKIAREG 250

Query: 558  ILVGLRRYCFFVFXXXXXXXXXXXXXSPTSSSVKCYFVCIDCVDSDDPLTIAPSILFCKS 737
            I VGLR+Y FFVF             +PTSS VKCYFV ++            S L  K+
Sbjct: 251  IFVGLRQYRFFVFKDGGKEEKKK---NPTSS-VKCYFVFMES-----------SALSGKT 295

Query: 738  VSEARSLFMHVHNVSSIAKYMARFSLILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVY 917
            V EAR +FMH H VSS+AKYMARFSLILSKT+KLD+D ++V ++ I+D   RD+DG +VY
Sbjct: 296  VHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPGRDEDGHVVY 355

Query: 918  NEDGEPRIHTDGTGFISQDLALKCPRNIFKGKCSSQSDLEKILLHQIAEEKSLGLEKSIK 1097
            +ED +P I TDGTGFIS+DLAL+CP N+ +GK  +  + +      + + +         
Sbjct: 356  DEDWKPLILTDGTGFISEDLALRCPNNLCRGKYMNNGNSD------VCDSRY-------- 401

Query: 1098 SYIGDPPLLIQFRMFHNGSAVKGTALVNKKLPRNTIQVRPSMIKVRSDLGHVNDEHMTNS 1277
                  PLLIQ R+F+NG AVKGT L+N+KLP  TIQ+RPSMIKV +D   ++D    NS
Sbjct: 402  ------PLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETD-PKLSDTQTVNS 454

Query: 1278 FEVVATSMKPKRTNLSKYLIALLSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALH 1457
             E+  TS +P+R+ LSKYLIALLSYGGVP+ YF+ LL DALED     + KRAALR +L 
Sbjct: 455  VEINGTSNQPRRSYLSKYLIALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLR 514

Query: 1458 YGEMDDFLVAKMILCGIPLEESFLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTG 1637
            +GEMDD +V +MIL GIP++E FL   LS ++  E K L+ GKLP+ND +YLMGTADPTG
Sbjct: 515  FGEMDDSIVTRMILSGIPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTG 574

Query: 1638 ILKPHQVCVILESGQVSGDILVYKHPGLHFGDIHVLEATYVQELQNYVGDAKYGIFFPIV 1817
             LK  +VC+IL+ GQV G +LVYKHPGLHFGDIHVL ATYV+ L+ +VG+AKY IFFPI 
Sbjct: 575  TLKSDEVCIILDHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIK 634

Query: 1818 GLRSIADEIANSDLDGDMYWVCRNTQLLNWFRPSTPWTQKHFSKNVPQPKPADFSDEDRL 1997
            G RS+ADE+ANSD DGDMYWV RN QLL +FR S PW +K  +++VP  +P DFS  D L
Sbjct: 635  GPRSLADEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFS-PDEL 693

Query: 1998 EHYLFEKFLAARF-SSNNVGVAAICWLGLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYD 2174
            EH LF+ FL  RF +S+ +G+AA  WL  MD  LTL +  +++ + ++ K+L LTDIYYD
Sbjct: 694  EHELFQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYD 753

Query: 2175 ALDVAKSGKK 2204
            ALD  KSG K
Sbjct: 754  ALDAPKSGMK 763


>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
            gi|550336519|gb|ERP59562.1| hypothetical protein
            POPTR_0006s17780g [Populus trichocarpa]
          Length = 866

 Score =  685 bits (1768), Expect = 0.0
 Identities = 368/724 (50%), Positives = 489/724 (67%), Gaps = 3/724 (0%)
 Frame = +3

Query: 36   EQRKPKKPKTSGHLQALNQLDFKKQFLILSYCGKKKLHDVISVDTIKSMQHMQMSCFEPQ 215
            ++++  +  TS HL AL +L+F+K FLIL+Y G K L +V+S D I+  + + M  FE +
Sbjct: 4    QRQRGSESTTSQHLVALGELEFRKAFLILNYLGGKNLEEVVSADQIRGYKDLPMETFESK 63

Query: 216  LWRLLG--RHCIQERDRAKGIDWGSEKPFMYHCHVDPDGNYTFKGPYLQAGQTHLQRVLG 389
            +W   G  R  I+E DR K +DW S K  +YHCHVDPDG+Y FKGPYL   +  LQR LG
Sbjct: 64   IWDAFGCRRDYIKEEDRVKYLDWDSGKAHIYHCHVDPDGSYRFKGPYLSKQRNVLQRTLG 123

Query: 390  DENVLVVKFSGQMVEGAGRNSLIRCNSTTSPHQPNRNEGVGIYNSNSAYHRIREEGILVG 569
            D+N+L+VKF     E    +S                    + N  + Y+++  EGI VG
Sbjct: 124  DDNILMVKFEEVKDERYSVSS-------------------SLDNYFAKYNKVLREGIHVG 164

Query: 570  LRRYCFFVFXXXXXXXXXXXXXSPTSSSVKCYFVCIDCVDSDDPLTIAPSILFCKSVSEA 749
            LR Y FFVF              PT+S VKC+FVC++ V S D      +IL  K++ +A
Sbjct: 165  LRCYRFFVFKDGGKEEKKK---DPTTSPVKCFFVCMESVASVDN---QDNILCGKTIRQA 218

Query: 750  RSLFMHVHNVSSIAKYMARFSLILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDG 929
            RS+FMHV N+SS++ YMARFSLILSKT+ L++D + V ++ I D  CRD+DG  VY  DG
Sbjct: 219  RSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDLSFVDIKPIADEPCRDKDGNAVYGTDG 278

Query: 930  EPRIHTDGTGFISQDLALKCPRNIFKGKCSSQSDLEKILLHQIAEEKSLGLEKSIKSYIG 1109
            +P IHTDGTGFIS DLALKCP+N  KG C   S++E++ +H         +E++ +   G
Sbjct: 279  KPLIHTDGTGFISHDLALKCPKNQVKGTCLQASNIERLRVHNEV------MEQNPECLHG 332

Query: 1110 DPPLLIQFRMFHNGSAVKGTALVNKKLPRNTIQVRPSMIKVRSDLGHVNDEHMTNSFEVV 1289
            DPPLLIQFR+F+NG AVKGT LVNKKL   T+ VRPSMIKV +D   +++    NS E+V
Sbjct: 333  DPPLLIQFRLFNNGRAVKGTFLVNKKLNHRTLHVRPSMIKVETD-PKLSNTFSKNSLEIV 391

Query: 1290 ATSMKPKRTNLSKYLIALLSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEM 1469
             TS +PK+T LSK LIALLSYGGVP+ +F+ +L +ALED     ++K+AALR AL+YG+M
Sbjct: 392  GTSCRPKKTFLSKNLIALLSYGGVPEEFFMGILNNALEDAHGILSNKKAALRVALNYGDM 451

Query: 1470 DDFLVAKMILCGIPLEESFLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKP 1649
            DD +VA MI CGIPLEE +L+  LS+L + E KSLK GK+P+ +SYYLMGTADPTG+L+ 
Sbjct: 452  DDNIVATMIGCGIPLEEPYLQHHLSILKKEEKKSLKGGKIPVPESYYLMGTADPTGLLES 511

Query: 1650 HQVCVILESGQVSGDILVYKHPGLHFGDIHVLEATYVQELQNYVGDAKYGIFFPIVGLRS 1829
             +VC+IL+ GQVSG++LVY++PGLHFGDIH+L+ATYV+EL+++VG+AKY IFFP  G RS
Sbjct: 512  DEVCIILDCGQVSGEVLVYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRS 571

Query: 1830 IADEIANSDLDGDMYWVCRNTQLLNWFRPSTPWTQKHFSKNVPQPKPADFSDEDRLEHYL 2009
            +ADE++  D DGDM++V RN +LL  F+ + PWT    + NVP  KP++FSDE+ LE  L
Sbjct: 572  LADEMSGGDFDGDMFFVSRNPRLLENFKQTEPWTPSTSTPNVPNRKPSEFSDEE-LEVEL 630

Query: 2010 FEKFLAARFS-SNNVGVAAICWLGLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDV 2186
            F+ FL  RF  S  VGVAA  WL +MD  LTL     E+I  V+  +  L DIYYDALD 
Sbjct: 631  FKLFLRNRFQPSFTVGVAADSWLAMMDRLLTLGNDCTEEIACVKKNINLLIDIYYDALDA 690

Query: 2187 AKSG 2198
             K G
Sbjct: 691  PKKG 694


>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
            gi|557110064|gb|ESQ50361.1| hypothetical protein
            EUTSA_v10001897mg [Eutrema salsugineum]
          Length = 988

 Score =  651 bits (1680), Expect = 0.0
 Identities = 359/719 (49%), Positives = 473/719 (65%), Gaps = 3/719 (0%)
 Frame = +3

Query: 57   PKTSGHLQALNQLDFKKQFLILSYCGKKKLHDVISVDTIKSMQHMQMSCFEPQLWRLLGR 236
            P     + AL++L+FKK FL+LSY   + L +V+S D I+  + + M  +E  +W  L R
Sbjct: 142  PHIPPQILALSELEFKKAFLLLSYFPGQSLAEVLSADEIRQWKDLPMVAYEAAVWDRLSR 201

Query: 237  HCIQERDRAKGIDWGSEKPFMYHCHVDPDGNYTFKGPYLQAGQTHLQRVLGDENVLVVKF 416
              + +      ++W SEK   Y CHV  DG+YTFKGP L+   THL +VLGDENVL VKF
Sbjct: 202  LELSQTVERVSLEWDSEKTHYYQCHVASDGSYTFKGPLLEPTGTHLHKVLGDENVLTVKF 261

Query: 417  SGQMVEGAGRNSLIRCNSTTSPHQPNRNEGVGIYNSNSAYHRIREEGILVGLRRYCFFVF 596
            +            ++ NS+T  +           +  SAY RI + GI+VGLRRY FFVF
Sbjct: 262  AD-----------VQKNSSTYSN-----------DRYSAYKRIAKNGIMVGLRRYQFFVF 299

Query: 597  XXXXXXXXXXXXXSPTSSSVKCYFVCIDCVDSDDPLTIAPSILFC-KSVSEARSLFMHVH 773
                           +++ VKCYF+  D   ++D   +  + +F  K+++EAR  FMHVH
Sbjct: 300  KDVGKAEKKKDF---STNGVKCYFIRTDSTAAND---MGKAYIFSGKTINEARMHFMHVH 353

Query: 774  NVSSIAKYMARFSLILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDG 953
             + S+AKYMARFSLILSKT KL++D   +  +EI++I C DQ+  +V +++ EPR+H+DG
Sbjct: 354  TLPSLAKYMARFSLILSKTKKLEVDMTGITYQEIKEIHCHDQNNNVVLDKNKEPRMHSDG 413

Query: 954  TGFISQDLALKCPRNIFKGKCSSQSDLEKILLHQIAEEKSLGLEKSIKSYIGDPPLLIQF 1133
            TG+IS+DLA  CP NIFKGKC S+ ++++                   S   DPPLLIQF
Sbjct: 414  TGYISEDLARMCPVNIFKGKCLSKKNIQE-------------------SCGQDPPLLIQF 454

Query: 1134 RMFHNGSAVKGTALVNKKLPRNTIQVRPSMIKVRSDLGHVNDEHMTNSFEVVATSMKPKR 1313
            RMF++G+AVKGT L+NKKLP  T+QVRPSMIKV  D    N     NS EVV TS  PKR
Sbjct: 455  RMFYDGNAVKGTFLLNKKLPDRTVQVRPSMIKVSKDRALSNFSTF-NSLEVVTTSNPPKR 513

Query: 1314 TNLSKYLIALLSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKM 1493
            T LS+ L+ALLSYGGVP+ +FL+LL + +E+TK   N+KRAAL+AAL++G+MDD   A+M
Sbjct: 514  TKLSRNLVALLSYGGVPNEFFLDLLLNTMEETKTIFNNKRAALKAALNHGDMDDQNAAQM 573

Query: 1494 ILCGIPLEESFLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILE 1673
            IL GIPL+E  LK RLS+L   E   LK G+LP+ +SYYLMGT DPTG LK  +VCVILE
Sbjct: 574  ILVGIPLDEPHLKDRLSILSNIEKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILE 633

Query: 1674 SGQVSGDILVYKHPGLHFGDIHVLEATYVQELQNYVGDAKYGIFFPIVGLRSIADEIANS 1853
            SGQ+SGD+LVY++PG+HFGDIHVL+ATYV+ L+ YVG++KY +FFP  G RS+ DEIA  
Sbjct: 634  SGQISGDVLVYRNPGVHFGDIHVLKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGG 693

Query: 1854 DLDGDMYWVCRNTQLLNWFRPSTPWTQ-KHFSKNVPQPKPADFSDEDRLEHYLFEKFLAA 2030
            D DGDMY++ RN +LL  F+PS PW      SK+    KP DFS E+ LE  LF+ FL A
Sbjct: 694  DFDGDMYFISRNPELLEQFKPSEPWVSLSPPSKSNSTRKPIDFSPEE-LEEELFDMFLKA 752

Query: 2031 RF-SSNNVGVAAICWLGLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAKSGKK 2204
            RF SSN +G+AA  WL +MD  LTL +  AE+  E++ K+L L DIYYDALD AK G K
Sbjct: 753  RFHSSNVIGMAADSWLTIMDRFLTLGDERAEEKAEMKRKMLSLIDIYYDALDAAKKGVK 811


>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
            gi|568843311|ref|XP_006475557.1| PREDICTED: probable
            RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
            sinensis] gi|557554498|gb|ESR64512.1| hypothetical
            protein CICLE_v10007331mg [Citrus clementina]
          Length = 1013

 Score =  650 bits (1676), Expect = 0.0
 Identities = 361/709 (50%), Positives = 483/709 (68%), Gaps = 5/709 (0%)
 Frame = +3

Query: 81   ALNQLDFKKQFLILSYCGKKKLHDVISVDTIKSMQHMQMSCFEPQLWRLLGRHCIQERDR 260
            AL +L+F+K FLILSY G+  L +VI+ D I+ M+ +QM+ FE ++W  LGR  I + DR
Sbjct: 151  ALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARFESEVWEKLGRKNISQEDR 210

Query: 261  AKGIDWGSEKPFMYHCHVDPDGNYTFKGPYLQAGQTHLQRVLGDENVLVVKFSGQMVEGA 440
               + W S K  MYHCH+   GN TFKGPYL   +THLQR LGD+N+L+VKF  ++  G 
Sbjct: 211  RMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGDDNILLVKFDEEL--GG 268

Query: 441  GRNSLIRCNSTTSPHQPNRNEGVGIYNSNSAYHRIREEGILVGLRRYCFFVFXXXXXXXX 620
             R+S             N N+      S S Y+ I  EGILVGLR Y FFVF        
Sbjct: 269  HRSS------------NNWND------SYSKYNEIAREGILVGLRCYHFFVF---KDGGK 307

Query: 621  XXXXXSPTSSSVKCYFVCIDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNVSSIAKYM 800
                  P++S VKCYFV ++     D       IL  K+V EAR +FMHV  VSS+A YM
Sbjct: 308  EEKKKDPSTSPVKCYFVRMESSAFID--MGYQYILSGKTVHEARYMFMHVRTVSSVANYM 365

Query: 801  ARFSLILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLA 980
            +R SLILSKT+KL++DF+ + +E IED  CRD+DG +VY +DGE  IHTDGTGFIS+DLA
Sbjct: 366  SRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVY-KDGEALIHTDGTGFISEDLA 424

Query: 981  LKCPRNIFKGKCSSQSDLEKILLHQIAEEKSLGLEKSIKSYIGDPPLLIQFRMFHNGSAV 1160
            LKCP  ++K KC++    E+ +  +  E     + ++ +S+ G+PPLL+Q R+F+NG+AV
Sbjct: 425  LKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVART-ESHYGEPPLLMQVRLFYNGTAV 483

Query: 1161 KGTALVNKKLPRNTIQVRPSMIKVRSDLGHVNDEHMTNSFEVVATSMKPKRTNLSKYLIA 1340
            KGT L+NKKLP  TIQ+RPSMIKV++D   ++D    NS EVV TS +P++T LS+ LIA
Sbjct: 484  KGTLLLNKKLPPQTIQIRPSMIKVKAD-RDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIA 542

Query: 1341 LLSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMD-DFLVAKMILCGIPLE 1517
            LLSYGGVP+ +FL++L +AL+D +   ++KR AL+ + +YG MD DF  A+MIL GI L+
Sbjct: 543  LLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD 602

Query: 1518 ESFLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGD- 1694
            E +L+ RLS+LM+ E KSL+ GKLP+ +SYYLMGT DPTGILK ++VC+IL+ GQVS + 
Sbjct: 603  EPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK 662

Query: 1695 ILVYKHPGLHFGDIHVLEATYVQELQNYVGDAKYGIFFPIVGLRSIADEIANSDLDGDMY 1874
            +LVY++PGLHFGDIHVL+ATYV+EL+++VG +KY IFFP  G RS+ADEIA  D DGDMY
Sbjct: 663  VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMY 722

Query: 1875 WVCRNTQLLNWFRPSTPW--TQKHFSKNVPQPKPADFSDEDRLEHYLFEKFLAARF-SSN 2045
            +V RN +LL  F+ S  W  T K+ S N    +P DFS E+ LE  LF+ FL  RF  SN
Sbjct: 723  FVSRNPELLKHFKESERWMSTSKNLSAN---KRPIDFSLEE-LESELFKLFLNTRFCPSN 778

Query: 2046 NVGVAAICWLGLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAK 2192
               +AA CW  +MD  LTL + +AE+   +++ +L L +IYYDALD  K
Sbjct: 779  AKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPK 827


>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
            gi|568843309|ref|XP_006475556.1| PREDICTED: probable
            RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
            sinensis] gi|557554497|gb|ESR64511.1| hypothetical
            protein CICLE_v10007331mg [Citrus clementina]
          Length = 1015

 Score =  650 bits (1676), Expect = 0.0
 Identities = 361/709 (50%), Positives = 483/709 (68%), Gaps = 5/709 (0%)
 Frame = +3

Query: 81   ALNQLDFKKQFLILSYCGKKKLHDVISVDTIKSMQHMQMSCFEPQLWRLLGRHCIQERDR 260
            AL +L+F+K FLILSY G+  L +VI+ D I+ M+ +QM+ FE ++W  LGR  I + DR
Sbjct: 153  ALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMARFESEVWEKLGRKNISQEDR 212

Query: 261  AKGIDWGSEKPFMYHCHVDPDGNYTFKGPYLQAGQTHLQRVLGDENVLVVKFSGQMVEGA 440
               + W S K  MYHCH+   GN TFKGPYL   +THLQR LGD+N+L+VKF  ++  G 
Sbjct: 213  RMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRELGDDNILLVKFDEEL--GG 270

Query: 441  GRNSLIRCNSTTSPHQPNRNEGVGIYNSNSAYHRIREEGILVGLRRYCFFVFXXXXXXXX 620
             R+S             N N+      S S Y+ I  EGILVGLR Y FFVF        
Sbjct: 271  HRSS------------NNWND------SYSKYNEIAREGILVGLRCYHFFVF---KDGGK 309

Query: 621  XXXXXSPTSSSVKCYFVCIDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNVSSIAKYM 800
                  P++S VKCYFV ++     D       IL  K+V EAR +FMHV  VSS+A YM
Sbjct: 310  EEKKKDPSTSPVKCYFVRMESSAFID--MGYQYILSGKTVHEARYMFMHVRTVSSVANYM 367

Query: 801  ARFSLILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLA 980
            +R SLILSKT+KL++DF+ + +E IED  CRD+DG +VY +DGE  IHTDGTGFIS+DLA
Sbjct: 368  SRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVY-KDGEALIHTDGTGFISEDLA 426

Query: 981  LKCPRNIFKGKCSSQSDLEKILLHQIAEEKSLGLEKSIKSYIGDPPLLIQFRMFHNGSAV 1160
            LKCP  ++K KC++    E+ +  +  E     + ++ +S+ G+PPLL+Q R+F+NG+AV
Sbjct: 427  LKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVART-ESHYGEPPLLMQVRLFYNGTAV 485

Query: 1161 KGTALVNKKLPRNTIQVRPSMIKVRSDLGHVNDEHMTNSFEVVATSMKPKRTNLSKYLIA 1340
            KGT L+NKKLP  TIQ+RPSMIKV++D   ++D    NS EVV TS +P++T LS+ LIA
Sbjct: 486  KGTLLLNKKLPPQTIQIRPSMIKVKAD-RDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIA 544

Query: 1341 LLSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMD-DFLVAKMILCGIPLE 1517
            LLSYGGVP+ +FL++L +AL+D +   ++KR AL+ + +YG MD DF  A+MIL GI L+
Sbjct: 545  LLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLD 604

Query: 1518 ESFLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGD- 1694
            E +L+ RLS+LM+ E KSL+ GKLP+ +SYYLMGT DPTGILK ++VC+IL+ GQVS + 
Sbjct: 605  EPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEK 664

Query: 1695 ILVYKHPGLHFGDIHVLEATYVQELQNYVGDAKYGIFFPIVGLRSIADEIANSDLDGDMY 1874
            +LVY++PGLHFGDIHVL+ATYV+EL+++VG +KY IFFP  G RS+ADEIA  D DGDMY
Sbjct: 665  VLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDMY 724

Query: 1875 WVCRNTQLLNWFRPSTPW--TQKHFSKNVPQPKPADFSDEDRLEHYLFEKFLAARF-SSN 2045
            +V RN +LL  F+ S  W  T K+ S N    +P DFS E+ LE  LF+ FL  RF  SN
Sbjct: 725  FVSRNPELLKHFKESERWMSTSKNLSAN---KRPIDFSLEE-LESELFKLFLNTRFCPSN 780

Query: 2046 NVGVAAICWLGLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAK 2192
               +AA CW  +MD  LTL + +AE+   +++ +L L +IYYDALD  K
Sbjct: 781  AKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPK 829


>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
            gi|548857326|gb|ERN15132.1| hypothetical protein
            AMTR_s00056p00110240 [Amborella trichopoda]
          Length = 988

 Score =  641 bits (1653), Expect = 0.0
 Identities = 349/711 (49%), Positives = 464/711 (65%), Gaps = 2/711 (0%)
 Frame = +3

Query: 78   QALNQLDFKKQFLILSYCGKKKLHDVISVDTIKSMQHMQMSCFEPQLWRLLGRHCIQERD 257
            +AL +L+F+K FLIL+Y GK+++ DV+S++ I++ + + M CFE ++WR +G     + D
Sbjct: 129  KALGELEFRKAFLILNYIGKQRIDDVLSIEKIRTWKDLSMQCFEYEVWRTVGERYASQTD 188

Query: 258  RAKGIDWGSEKPFMYHCHVDPDGNYTFKGPYLQAGQTHLQRVLGDENVLVVKFSGQMVEG 437
            R + +DW S K   Y CHVDP GN++FKGP+L++ QTHL+RVLGD+ VL VKF+ +MV+ 
Sbjct: 189  R-RNLDWDSGKAENYQCHVDPVGNFSFKGPFLESTQTHLRRVLGDDKVLTVKFAEEMVD- 246

Query: 438  AGRNSLIRCNSTTSPHQPNRNEGVGIYNSNSAYHRIREEGILVGLRRYCFFVFXXXXXXX 617
                               R     +  S + + RI ++GILVGLRRY FFVF       
Sbjct: 247  ------------------ERRGEFNLSRSKNIFRRIAKDGILVGLRRYHFFVFKDGGKEE 288

Query: 618  XXXXXXSPTSSSVKCYFVCIDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNVSSIAKY 797
                  +  ++ VKCYFVC+      D  T  P IL  K++ EARS+FM VH V ++AKY
Sbjct: 289  KRK---NANTTGVKCYFVCMKSDAESDMHT--PYILSNKTIQEARSMFMDVHTVPNLAKY 343

Query: 798  MARFSLILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDL 977
            MARFSLILSKTIKL++D  SV +E I D  C D    IVY+++G+  IHTDGTGFIS+DL
Sbjct: 344  MARFSLILSKTIKLEVDLGSVNIERINDKPCLDNHNEIVYDQNGQCLIHTDGTGFISEDL 403

Query: 978  ALKCPRNIFKGKCSSQSDLEKILLHQIAEEKSLGLEKSIKSYIGDPPLLIQFRMFHNGSA 1157
              K  +NIFK +   Q  +E  L       KS+ L++ IK   GD  LLIQFR+F++G A
Sbjct: 404  MSKFSKNIFKERYLKQKKVETCLNGMELNAKSV-LDEEIKYVSGDLHLLIQFRLFYDGCA 462

Query: 1158 VKGTALVNKKLPRNTIQVRPSMIKVRSDLGHVNDEHMTNSFEVVATSMKPKRTNLSKYLI 1337
            VKGT LVNK LP NTIQVRPSM+KV  D          NSFE+V TS +P+   LS+YLI
Sbjct: 463  VKGTVLVNKLLPPNTIQVRPSMVKVERDTDFSRLPSF-NSFEMVGTSNRPRGAALSRYLI 521

Query: 1338 ALLSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEM-DDFLVAKMILCGIPL 1514
             LLS+GGVP   F+ L+  AL+D +     K+ AL AA+ Y E+ D+ LVA+MI CG+PL
Sbjct: 522  TLLSHGGVPKSCFMFLIQAALDDVQNVRYSKKLALTAAVKYQEISDNLLVARMIFCGLPL 581

Query: 1515 EESFLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGD 1694
            EE +L+ RLS+LM+ E K LKEGK+ + +SYYLMGTADPTG LK ++VC+IL+ GQ+SG 
Sbjct: 582  EEPYLQHRLSILMKEERKGLKEGKVLLPNSYYLMGTADPTGKLKGNEVCIILDHGQISGK 641

Query: 1695 ILVYKHPGLHFGDIHVLEATYVQELQNYVGDAKYGIFFPIVGLRSIADEIANSDLDGDMY 1874
            +LVY+HPGLHFGDIHV  ATY+++L   VG+AK+ IFF   G RS ADEIAN D DGDMY
Sbjct: 642  VLVYRHPGLHFGDIHVFTATYIEDLVEIVGNAKFAIFFSTQGPRSAADEIANGDFDGDMY 701

Query: 1875 WVCRNTQLLNWFRPSTPWTQKHFSKNVPQPKPADFSDEDRLEHYLFEKFLAARFSSNNVG 2054
            W+  N +LL++F+   PW +    K  PQ KP ++S  D LE  LF+ FL +RF  +   
Sbjct: 702  WISTNPELLHYFKAGPPWERSSSEKPPPQRKPIEYS-PDELETELFDLFLESRFHPSIAK 760

Query: 2055 VAAI-CWLGLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAKSGKK 2204
             AA   WL  MD  LTL +  AE+   +  K+L L D+YY+A+D  KSGKK
Sbjct: 761  CAAADSWLVYMDRLLTLGDECAEEKGCLHQKMLKLADLYYEAVDAPKSGKK 811


>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            tuberosum]
          Length = 911

 Score =  635 bits (1639), Expect = e-179
 Identities = 343/730 (46%), Positives = 465/730 (63%), Gaps = 6/730 (0%)
 Frame = +3

Query: 33   EEQRKPKKPKTSGHLQALNQLDFKKQFLILSYCGKKKLHDVIS---VDTIKSMQHMQMSC 203
            E   +   P  S  L  LN+L+F+K FL+LSY G KKL D++S    D I   +++ M+ 
Sbjct: 147  ESNCRRTSPNVSQQLMILNELEFRKLFLVLSYIGCKKLEDIVSPQIADDIVRKKNLSMTD 206

Query: 204  FEPQLWRLLGRHCIQERDRAKGIDWGSEKPFMYHCHVDPDGNYTFKGPYLQAGQTHLQRV 383
            FE ++W   G+    E DR+K +DW   K  +Y+CH+  +G  TFKGPYL   +THLQR 
Sbjct: 207  FESEIWNAFGKAYYAESDRSKYVDWNCRKTHIYYCHIKQNGQCTFKGPYLNTARTHLQRA 266

Query: 384  LGDENVLVVKFSGQMVEGAGRNSLIRCNSTTSPHQPNRNEGVGIYNSNSAYHRIREEGIL 563
            LGD+NVL+VKF                                     S  + I EEGIL
Sbjct: 267  LGDDNVLLVKF---------------------------------VEDTSCANMIVEEGIL 293

Query: 564  VGLRRYCFFVFXXXXXXXXXXXXXSPTSSSVKCYFVCIDCVDSDDPLTIAPSILFC-KSV 740
            VGLRRY FFV+                ++S+KCYFV  + +++ +      S +F  K +
Sbjct: 294  VGLRRYRFFVYKDDKEKKKSPAMMKKKTASLKCYFVRFESIETCND---GGSYVFSTKRI 350

Query: 741  SEARSLFMHVHNVSSIAKYMARFSLILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYN 920
            S+AR  FMHVH VS++AKY AR SLILSKTIKL ++ ASV +E IEDI CRD++GCI+ +
Sbjct: 351  SQARCQFMHVHMVSNMAKYAARLSLILSKTIKLQVNLASVTIERIEDILCRDENGCIIKD 410

Query: 921  EDGEPRIHTDGTGFISQDLALKCPRNIFKGKCSSQSDLEKIL-LHQIAEEKSLGLEKSIK 1097
            EDGEPRIHTDGTGFIS+DLA+ CP++  K +     + E  + +  +  E+     +   
Sbjct: 411  EDGEPRIHTDGTGFISEDLAMHCPKDFVKAEYIKDENYENFVDIVDLDAER-----RESV 465

Query: 1098 SYIGDPPLLIQFRMFHNGSAVKGTALVNKKLPRNTIQVRPSMIKVRSDLGHVNDEHMTNS 1277
            S+  +PPLL+Q R+F NG AVKGT LVN+K+    I +RPSM+KV  D   ++     +S
Sbjct: 466  SWNREPPLLMQCRLFFNGCAVKGTFLVNRKIGSRKIHIRPSMVKVEIDPA-ISSIPTFDS 524

Query: 1278 FEVVATSMKPKRTNLSKYLIALLSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALH 1457
             E+VA S +P +  LSK LI+LLSYGGV   YF+ELL  ALE+TK+ +  KRAAL+  ++
Sbjct: 525  LEIVAISHRPNKAYLSKNLISLLSYGGVQKEYFMELLGSALEETKQVYLRKRAALKVVIN 584

Query: 1458 YGEMDD-FLVAKMILCGIPLEESFLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPT 1634
            Y EMDD  L A+MI  GIPL E  L+ARLS L + E   L+ GKLP++DS+YLMGTADPT
Sbjct: 585  YREMDDDCLTARMISSGIPLNEPHLRARLSRLAKIERTKLRGGKLPISDSFYLMGTADPT 644

Query: 1635 GILKPHQVCVILESGQVSGDILVYKHPGLHFGDIHVLEATYVQELQNYVGDAKYGIFFPI 1814
            G+L+ ++VCVIL++GQ+SG +LVY++PGLHFGD+HV++A YV+EL + VGDAKYGIFF  
Sbjct: 645  GVLESNEVCVILDNGQISGRVLVYRNPGLHFGDVHVMKARYVEELADVVGDAKYGIFFST 704

Query: 1815 VGLRSIADEIANSDLDGDMYWVCRNTQLLNWFRPSTPWTQKHFSKNVPQPKPADFSDEDR 1994
             G RS A EIAN D DGDMYWV  N ++++ +  S PW++ H +      KP++FS  D+
Sbjct: 705  KGPRSAATEIANGDFDGDMYWVSINRKVVDSYTTSRPWSRMHSTPKAVSKKPSEFS-ADK 763

Query: 1995 LEHYLFEKFLAARFSSNNVGVAAICWLGLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYD 2174
            LE+ LF +FL A+    N+ VAA  WL  MD  L L + N +++  ++ K+LHL DIYYD
Sbjct: 764  LEYELFRQFLEAKSKGANMSVAADSWLAFMDRLLMLRDDNVDEMHSLKGKMLHLIDIYYD 823

Query: 2175 ALDVAKSGKK 2204
            ALD  KSGKK
Sbjct: 824  ALDAPKSGKK 833


>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
          Length = 988

 Score =  625 bits (1613), Expect = e-176
 Identities = 354/726 (48%), Positives = 471/726 (64%), Gaps = 6/726 (0%)
 Frame = +3

Query: 45   KPKKPKTSGHLQALNQLDFKKQFLILSYCGKKKLHDVISVDTIKSMQHMQMSCFEPQLWR 224
            +P +P  S  L AL +L+F+K FLILSY G++ L + I+   I+S++ + M+ FE  +W 
Sbjct: 113  RPPRPTPSSLLHALGELEFRKAFLILSYIGRESLENCITDAKIRSLKDLPMAKFEKTIWE 172

Query: 225  LLGRHCIQER-DRAKGIDWGSEKPFMYHCHVDPDGNYTFKGPYLQAGQTHLQRVLGDENV 401
              G  CI ++ DR    DW S +  +Y C V PDGN  FKGP LQ+ +THLQ+ LGD+NV
Sbjct: 173  DFGEKCIYDQSDRQLHRDWNSGRTHVYQCFVFPDGNLRFKGPILQSTRTHLQKTLGDDNV 232

Query: 402  LVVKFSGQMVEGAGRNSLIRCNSTTSPHQPNRNEGVGIYNSNSAYHRIREEGILVGLRRY 581
            L+VKF+    +G+G+N                        +N+ Y +  +EGI VGLR Y
Sbjct: 233  LLVKFAE---DGSGKNFRTHAEE-----------------ANALYGKFGKEGIRVGLRLY 272

Query: 582  CFFVFXXXXXXXXXXXXXSPTSSSVKCYFVCIDCVDSDDPLTIAPSILFCKSVSEARSLF 761
             FFVF              PTSS+VKCYFV +    S D    A  IL  K+VSEAR+LF
Sbjct: 273  RFFVFKDGGNEEKQK---DPTSSTVKCYFVRMQSGCSADEG--ADYILSNKTVSEARTLF 327

Query: 762  MHVHNV-SSIAKYMARFSLILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPR 938
            MH H +  ++ KYMARFSLILSKT+KL+ID  +V V++I D  C+D +G I+ + + +PR
Sbjct: 328  MHAHMLLPNLNKYMARFSLILSKTLKLNIDLTTVSVQKIPDEYCKDANGNIMVDNE-KPR 386

Query: 939  IHTDGTGFISQDLALKCPRNIFKGKCSSQSDLEKILLHQIAEEKSLGLEKSIKSYIGDPP 1118
            I TDGTGFIS+DLAL CP N++KG     + +++I      E+ S  + ++ +    +PP
Sbjct: 387  ILTDGTGFISRDLALLCPNNVYKGSNLENNCIQEINNLVELEDMSNAMGEAEQLSTHEPP 446

Query: 1119 LLIQFRMFHNGSAVKGTALVNKKLPRNTIQVRPSMIKVRSDLGHVNDEHMT--NSFEVVA 1292
            LLIQ R+FH G A+KGT LVN+KLP  TIQVRPSMIKV  D       HM   NS EVV 
Sbjct: 447  LLIQCRLFHMGHAIKGTLLVNRKLPPRTIQVRPSMIKVEKD----PSVHMQSINSLEVVT 502

Query: 1293 TSMKPKRTNLSKYLIALLSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMD 1472
            TS KPKR  LSK+LIALLS+GGVP+ +F++LL   +ED    +++KR+ALRA+++ GE D
Sbjct: 503  TSNKPKRGYLSKHLIALLSFGGVPNEFFMDLLRSNMEDANHVYSNKRSALRASINCGEKD 562

Query: 1473 DFLVAKMILCGIPLEESFLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPH 1652
            ++  A+MILCGIPL+E FLK  LS   R E K L+ GKL M D +YLMGT DPTG LK +
Sbjct: 563  EYNAAEMILCGIPLDEPFLKHHLSRFAREEKKKLRGGKLYMPDCFYLMGTVDPTGHLKKN 622

Query: 1653 QVCVILESGQVSGDILVYKHPGLHFGDIHVLEATYVQELQNYVGDAKYGIFFPIVGLRSI 1832
            QVC+I E+ Q+ GD+LVY++PGLHFGDIH ++ATYV+EL++YVG +KYGIFFP VG RS+
Sbjct: 623  QVCIIHENSQIVGDVLVYRNPGLHFGDIHKMDATYVKELESYVGHSKYGIFFPRVGTRSV 682

Query: 1833 ADEIANSDLDGDMYWVCRNTQLLNWFRPSTPWTQKHFSKNVPQPKPADFSDEDRLEHYLF 2012
            ADEIA  D DGD YWV  + QLL +FR   PW +     +    KP++FS E+ LE  LF
Sbjct: 683  ADEIAGGDFDGDTYWVSNHPQLLQYFRKGDPWIENSVPLDSSVKKPSEFSPEE-LEEELF 741

Query: 2013 EKFLAARFS-SNNVGVAAICWLGLMDTRLTLDESNAEKIKE-VEDKLLHLTDIYYDALDV 2186
              FL  RF  S  +G++   W+ LMD  LTL+    E  KE V++ +L L DIYY+ALD 
Sbjct: 742  RLFLKTRFQPSYAMGMSENSWMALMDRLLTLNNCTNENEKERVKENMLKLIDIYYEALDA 801

Query: 2187 AKSGKK 2204
             KSG+K
Sbjct: 802  PKSGRK 807


>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
            gi|482565615|gb|EOA29804.1| hypothetical protein
            CARUB_v10012898mg [Capsella rubella]
          Length = 982

 Score =  619 bits (1595), Expect = e-174
 Identities = 350/713 (49%), Positives = 453/713 (63%), Gaps = 3/713 (0%)
 Frame = +3

Query: 75   LQALNQLDFKKQFLILSYCGKKKLHDVISVDTIKSMQHMQMSCFEPQLWRLLGRHCIQER 254
            L AL +L+FKK FL+LSY   ++L +V++ + I+  + + M  +E  +W  LGR    + 
Sbjct: 145  LVALGELEFKKAFLLLSYIPGQRLGEVVTAEEIRRWKDLPMVAYEAAVWDSLGRKFCPQT 204

Query: 255  DRAKGIDWGSEKPFMYHCHVDPDGNYTFKGPYLQAGQTHLQRVLGDENVLVVKFSGQMVE 434
            D  + + W S K   Y CHV PDG+YTFKGP L++  THL +VLGDENVL VKF+     
Sbjct: 205  DE-RVLQWDSGKTHYYQCHVAPDGSYTFKGPLLESTGTHLHKVLGDENVLTVKFANVQ-- 261

Query: 435  GAGRNSLIRCNSTTSPHQPNRNEGVGIYNSNSAYHRIREEGILVGLRRYCFFVFXXXXXX 614
               +NS   C+                 +S   Y  I + GI+VGLRRY FFVF      
Sbjct: 262  ---KNSSTYCS-----------------DSYFTYKGIAKNGIMVGLRRYKFFVFKDGGKD 301

Query: 615  XXXXXXXSPTSSSVKCYFVCIDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNVSSIAK 794
                     ++   KCYF+  D   S D     P I   KS+ EAR  FMHVH + S+A 
Sbjct: 302  DKNKDV---STKRAKCYFIRTDSTASID--MEKPYIFSGKSIHEARMHFMHVHTLPSLAN 356

Query: 795  YMARFSLILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQD 974
            YMARFSLILSKT KL++D   V  E I+DI C DQDG  V +++ +PRIH+DGTG+IS+D
Sbjct: 357  YMARFSLILSKTKKLEVDLTGVNFEIIKDIPCHDQDGKDVLDKNKKPRIHSDGTGYISED 416

Query: 975  LALKCPRNIFKGKCSSQSDLEKILLHQIAEEKSLGLEKSIKSYIG-DPPLLIQFRMFHNG 1151
            LA  CP NI+KGKC  +SD                    IK   G +PPLLIQFRMF+NG
Sbjct: 417  LAQMCPVNIYKGKCL-RSD-------------------KIKEACGQEPPLLIQFRMFYNG 456

Query: 1152 SAVKGTALVNKKLPRNTIQVRPSMIKVRSDLGHVNDEHMTNSFEVVATSMKPKRTNLSKY 1331
             A+KGT L+NKK+P  T+QVRPSMIKV  D   + +    N+ EVV TS  PKRT LS+ 
Sbjct: 457  YAIKGTFLLNKKIPSRTVQVRPSMIKVLPD--SLPNISTFNTLEVVNTSFPPKRTKLSRN 514

Query: 1332 LIALLSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIP 1511
            L+ALLSYGG+PD +FL++L + LE++K    +KRAAL AAL YGEMDD   A+MIL GIP
Sbjct: 515  LVALLSYGGIPDEFFLDILHNTLEESKAIFYNKRAALNAALSYGEMDDQNAAQMILAGIP 574

Query: 1512 LEESFLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSG 1691
            L+E  LK  LS  ++ E   LK G+LP+ +SYYLMGT DPTG LK  +VCVILESGQ+SG
Sbjct: 575  LDEPHLKTCLSSFLKREKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILESGQISG 634

Query: 1692 DILVYKHPGLHFGDIHVLEATYVQELQNYVGDAKYGIFFPIVGLRSIADEIANSDLDGDM 1871
            ++LVY++PGLHFGDIHVL+ATYV+ L+ YVG++K+ +FFP  G RS+ DEIA  D DGD+
Sbjct: 635  EVLVYRNPGLHFGDIHVLKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDI 694

Query: 1872 YWVCRNTQLLNWFRPSTPWTQ-KHFSKNVPQPKPADFSDEDRLEHYLFEKFLAARF-SSN 2045
            Y++ RN +LL  F+PS PW      SK+     P  FS E+ LE  LFE FL A F +SN
Sbjct: 695  YFISRNPELLEHFKPSEPWVSLTPPSKSNSARGPCQFSPEE-LEEELFEMFLKAGFHASN 753

Query: 2046 NVGVAAICWLGLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAKSGKK 2204
             +G+AA  WL +MD  L L + +A++  E++ K+L L DIYYDALD  K G K
Sbjct: 754  VIGMAADSWLTIMDRFLILGDESADEKAEMKQKMLELIDIYYDALDAPKKGAK 806


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 981

 Score =  613 bits (1580), Expect = e-172
 Identities = 344/712 (48%), Positives = 446/712 (62%), Gaps = 2/712 (0%)
 Frame = +3

Query: 75   LQALNQLDFKKQFLILSYCGKKKLHDVISVDTIKSMQHMQMSCFEPQLWRLLGRHCIQER 254
            L AL +L+FKK FL+LSY   ++L  V + D I+  + + M  +E  +W  LGR    + 
Sbjct: 141  LVALGELEFKKAFLLLSYIPGQQLGQVTTADEIRLWKDLPMVAYEAAVWDRLGRRYCPQT 200

Query: 255  DRAKGIDWGSEKPFMYHCHVDPDGNYTFKGPYLQAGQTHLQRVLGDENVLVVKFSGQMVE 434
            DR + + W S K   Y CHV PDG+YTFKGP L+   THL +VLGDENVL VKF+     
Sbjct: 201  DR-RMLQWDSGKTHYYQCHVAPDGSYTFKGPLLEHTGTHLHKVLGDENVLTVKFAD---- 255

Query: 435  GAGRNSLIRCNSTTSPHQPNRNEGVGIYNSNSAYHRIREEGILVGLRRYCFFVFXXXXXX 614
                   +  NS+T  +           +    Y  I + GI++GLRRY FFVF      
Sbjct: 256  -------VPKNSSTYSN-----------DRYFTYKEIAKNGIMIGLRRYQFFVFKDGGKE 297

Query: 615  XXXXXXXSPTSSSVKCYFVCIDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNVSSIAK 794
                     ++  VKCYF+  D   S D     P I   KS+ EAR  FMHVH   ++A 
Sbjct: 298  EKKKDL---STKKVKCYFIRTDSTASCDMEN--PYIFTGKSIHEARMHFMHVHRAPTLAN 352

Query: 795  YMARFSLILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQD 974
            YMARFSLILSKT  L++D   +  + I+DI C DQDG  V +++ +P IH+DGTG+IS+D
Sbjct: 353  YMARFSLILSKTKTLEVDMTGITFDPIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISED 412

Query: 975  LALKCPRNIFKGKCSSQSDLEKILLHQIAEEKSLGLEKSIKSYIGDPPLLIQFRMFHNGS 1154
            LA  CP NIFKGKC    ++++                       DPPLLIQFRMF++G 
Sbjct: 413  LARMCPLNIFKGKCLRSENIQEACNQ-------------------DPPLLIQFRMFYDGY 453

Query: 1155 AVKGTALVNKKLPRNTIQVRPSMIKVRSDLGHVNDEHMTNSFEVVATSMKPKRTNLSKYL 1334
            AVKGT L+NKKL   T+QVRPSMIKV  D    N     N+ EVV TS  P+RT LSK L
Sbjct: 454  AVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTF-NALEVVTTSNPPRRTKLSKNL 512

Query: 1335 IALLSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPL 1514
            +ALLSYGG+P+ +FL++L + LE++K    +K AAL  AL+YGEMDD   A+MIL GIPL
Sbjct: 513  VALLSYGGIPNEFFLDILLNTLEESKSIFYNKHAALNVALNYGEMDDQNAAQMILVGIPL 572

Query: 1515 EESFLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGD 1694
            +E  LK  LS+L++TE   LK G+LP+ +SYYLMGT DPTG LK  +VCVILESGQ+SG+
Sbjct: 573  DEPHLKNHLSILLKTEKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILESGQISGE 632

Query: 1695 ILVYKHPGLHFGDIHVLEATYVQELQNYVGDAKYGIFFPIVGLRSIADEIANSDLDGDMY 1874
            +LVY++PGLHFGDIH+L+ATYV+ L+ YVG++KY +FFP  G RS+ DEIA  D DGDMY
Sbjct: 633  VLVYRNPGLHFGDIHILKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMY 692

Query: 1875 WVCRNTQLLNWFRPSTPWTQ-KHFSKNVPQPKPADFSDEDRLEHYLFEKFLAARF-SSNN 2048
            ++ RN +LL  F+PS PW      SK+     P+  S E+ LE  LFE FL A F +SN 
Sbjct: 693  FISRNPELLEHFKPSEPWVSLTPPSKSNSGRAPSQLSPEE-LEEELFEMFLKAGFHASNV 751

Query: 2049 VGVAAICWLGLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAKSGKK 2204
            +G+AA  WL +MD  L L +  AE+  E++ K+L L DIYYDALD  K G K
Sbjct: 752  IGIAADSWLTIMDRLLILGDERAEEKAEMKKKMLKLIDIYYDALDAPKKGDK 803


>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
            gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 5;
            Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
            5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
            polymerase 5 [Arabidopsis thaliana]
          Length = 977

 Score =  606 bits (1563), Expect = e-170
 Identities = 345/718 (48%), Positives = 450/718 (62%), Gaps = 8/718 (1%)
 Frame = +3

Query: 75   LQALNQLDFKKQFLILSYCGKKKLHDVISVDTIKSMQHMQMSCFEPQLWRLLGRHCIQER 254
            L AL +L+FKK FL+LSY   + +  VI+ D I+  + + M  +E  +W  LGRH   ++
Sbjct: 131  LVALGELEFKKVFLLLSYIPGQHVGQVITADEIRLWKDLPMVEYEAAVWDRLGRHYCPQK 190

Query: 255  DRAKGIDWGSEKPFMYHCHVDPDGNYTFK------GPYLQAGQTHLQRVLGDENVLVVKF 416
            DR + + W S K   Y C+V P+G+YTFK      GP L+   THL +VLGD+NVL VKF
Sbjct: 191  DR-RMLQWDSGKTHYYQCNVAPNGSYTFKVLSALQGPLLEHTGTHLHKVLGDDNVLTVKF 249

Query: 417  SGQMVEGAGRNSLIRCNSTTSPHQPNRNEGVGIYNSNSAYHRIREEGILVGLRRYCFFVF 596
            +           + + +ST S             +    Y  I + GI++GLRRY FFVF
Sbjct: 250  A----------DVQKSSSTYS------------IDHYFTYKGIAKNGIMIGLRRYQFFVF 287

Query: 597  XXXXXXXXXXXXXSPTSSSVKCYFVCIDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHN 776
                           ++  VKCYF+  D     D     P IL  KS+ EAR  FMHVH 
Sbjct: 288  KDGGKEEKKKDL---STKKVKCYFIRTDSTAFYDMQN--PYILTGKSIYEARMHFMHVHR 342

Query: 777  VSSIAKYMARFSLILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGT 956
              ++A YMARFSLILSKT  L++D   +  ++I+DI C DQDG  V +++ +P IH+DGT
Sbjct: 343  APTLANYMARFSLILSKTKTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGT 402

Query: 957  GFISQDLALKCPRNIFKGKCSSQSDLEKILLHQIAEEKSLGLEKSIKSYIGDPPLLIQFR 1136
            G+IS+DLA  CP NIFKGKC     +++                       DPPLLIQFR
Sbjct: 403  GYISEDLARMCPLNIFKGKCLRSESIQEACYQ-------------------DPPLLIQFR 443

Query: 1137 MFHNGSAVKGTALVNKKLPRNTIQVRPSMIKVRSDLGHVNDEHMTNSFEVVATSMKPKRT 1316
            MF++G AVKGT L+NKKL   T+QVRPSMIKV  D    N     N+ EVV TS  PKRT
Sbjct: 444  MFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTF-NALEVVTTSNPPKRT 502

Query: 1317 NLSKYLIALLSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMI 1496
             LSK L+ALLSYGG+P+ +FL++L + LE++K    +KRAAL AAL+YGEMDD   A+MI
Sbjct: 503  KLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQNAAQMI 562

Query: 1497 LCGIPLEESFLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILES 1676
            L GIPL+E  LK  LS+L++TE   LK GKLP+ +SYYLMGT DPTG LK  +VCVILES
Sbjct: 563  LVGIPLDEPHLKNYLSILLKTEKNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVILES 622

Query: 1677 GQVSGDILVYKHPGLHFGDIHVLEATYVQELQNYVGDAKYGIFFPIVGLRSIADEIANSD 1856
            GQ+SG++LVY++PGLHFGDIH+L+ATYV+ L+ YVG++K+ +FFP  G RS+ DEIA  D
Sbjct: 623  GQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGD 682

Query: 1857 LDGDMYWVCRNTQLLNWFRPSTPWTQ-KHFSKNVPQPKPADFSDEDRLEHYLFEKFLAAR 2033
             DGDMY++ RN +LL  F+PS PW      SK+     P+  S E+ LE  LFE FL A 
Sbjct: 683  FDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEE-LEEELFEMFLTAG 741

Query: 2034 F-SSNNVGVAAICWLGLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAKSGKK 2204
            F +SN +G+AA  WL +MD  L L +  AE+  E++ K+L L DIYYDALD  K G K
Sbjct: 742  FHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDK 799


>gb|AHL27588.1| RNA-dependent RNA polymerase 5 [Salvia miltiorrhiza]
          Length = 898

 Score =  603 bits (1554), Expect = e-169
 Identities = 334/720 (46%), Positives = 451/720 (62%), Gaps = 7/720 (0%)
 Frame = +3

Query: 66   SGHLQALNQLDFKKQFLILSYCGKKKLHDVISVDTIKSM---QHMQMSCFEPQLWRLLGR 236
            S  L  LN+L+F+K FL+LSY   +KL DV++ +    +   + + M  FE  +W   G 
Sbjct: 156  SPQLLTLNKLEFRKLFLLLSYANGQKLEDVLTTEEANQVYANKALPMPEFERLIWDKFGY 215

Query: 237  HCIQERDRAKGIDWGSEKPFMYHCHVDPDGNYTFKGPYLQAGQTHLQRVLGDENVLVVKF 416
                  DR++ +DW S K  +Y+CHV+PDG+Y+FKGPYL + +THLQR LGD+NVL VKF
Sbjct: 216  RYCNGLDRSQHLDWDSGKTHIYNCHVNPDGSYSFKGPYLNSSRTHLQRSLGDDNVLTVKF 275

Query: 417  SGQMVEGAGRNSLIRCNSTTSPHQPNRNEGVGIYNSNSAYHRIREEGILVGLRRYCFFVF 596
              + +  A                                 +I EEG++VGLRRY FFVF
Sbjct: 276  LAKEIYPA--------------------------------RKIVEEGLIVGLRRYRFFVF 303

Query: 597  XXXXXXXXXXXXXSPTSS--SVKCYFVCIDCVDSDDPLTIAPSILFCKSVSEARSLFMHV 770
                            SS  +VKCYFV +D + S+D       +LF KSVSEAR LFMH+
Sbjct: 304  KDEQKKAKKNQAEDNKSSHSAVKCYFVHLDSISSNDHEE--DYVLFRKSVSEARRLFMHI 361

Query: 771  HNVSSIAKYMARFSLILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTD 950
            H +S+I KYMAR SLILSKT ++D+DFA++ VE IEDI  +D +G I+ +EDG+P +HTD
Sbjct: 362  HTLSTIEKYMARLSLILSKTTRIDLDFAAIIVEIIEDIPFQDDNGSIIRDEDGKPILHTD 421

Query: 951  GTGFISQDLALKCPRNIFKGKCSSQSDLEKILLHQIAEEKSLGLEKSIKSYIGDPPLLIQ 1130
            GTG+ISQDLA+KC ++ +    ++ S  E                          PLLIQ
Sbjct: 422  GTGYISQDLAMKCSKDFYASMHNTNSTFE--------------------------PLLIQ 455

Query: 1131 FRMFHNGSAVKGTALVNKKLPRNTIQVRPSMIKVRSDLGHVNDEHMT-NSFEVVATSMKP 1307
             R+FH+G AVKGT LVN+KL    IQ+RPSMIKV  D    ++E +  NS E+   S +P
Sbjct: 456  CRLFHDGYAVKGTLLVNRKLEPGRIQIRPSMIKVEKDHSMESEEILKFNSLEINTISRRP 515

Query: 1308 KRTNLSKYLIALLSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVA 1487
             R  LSKYLI+LLSYGGVP  +FL LL  ALE+T+  ++++R ALR A H+ + D  L+A
Sbjct: 516  NRNFLSKYLISLLSYGGVPQEFFLNLLFKALEETQNVYSNRRVALRVASHHDDWDLGLMA 575

Query: 1488 -KMILCGIPLEESFLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCV 1664
             +MI CGIPL+E +L+  LS L  ++ K LKEG++P+++S YLMGTADPTG+L   +VCV
Sbjct: 576  QRMICCGIPLDEPYLQHCLSKLESSQKKKLKEGRIPVDESCYLMGTADPTGVLHNDEVCV 635

Query: 1665 ILESGQVSGDILVYKHPGLHFGDIHVLEATYVQELQNYVGDAKYGIFFPIVGLRSIADEI 1844
            IL+SGQ+SG +LVY++PG+HFGDIHV+EA YV+ L+ ++G+AKYGIFF   G RS A EI
Sbjct: 636  ILDSGQISGKVLVYRNPGMHFGDIHVMEAVYVKGLEEFIGNAKYGIFFSTKGQRSAAYEI 695

Query: 1845 ANSDLDGDMYWVCRNTQLLNWFRPSTPWTQKHFSKNVPQPKPADFSDEDRLEHYLFEKFL 2024
            A  D DGD YWV RN +LL +F+ S PW + + + +  +  P  FS  + LE  LF+ FL
Sbjct: 696  ATGDFDGDTYWVSRNPELLTFFKASEPWKRVYPAPDAEKRDPRKFSSSE-LERELFQLFL 754

Query: 2025 AARFSSNNVGVAAICWLGLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAKSGKK 2204
             +R  S N+G AA  WL  MD  LTL +  A +   ++ K++ L DIYYDALD  KSGKK
Sbjct: 755  DSRTPSYNMGTAADSWLTYMDRLLTLGDDRAAEKNSLKTKMIKLVDIYYDALDAPKSGKK 814


>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            tuberosum]
          Length = 1110

 Score =  601 bits (1549), Expect = e-169
 Identities = 340/722 (47%), Positives = 453/722 (62%), Gaps = 9/722 (1%)
 Frame = +3

Query: 66   SGHLQALNQLDFKKQFLILSYCGKKKLHDVI---SVDTIKSMQHMQMSCFEPQLWRLLGR 236
            S  L AL++L+F+K FLIL+Y G++K+ DVI    V  I  M +  MS FE  +W   G 
Sbjct: 241  SEQLLALSKLEFRKFFLILNYIGRRKVEDVIMLHDVGDILDMIYQPMSHFESYIWNKYGH 300

Query: 237  HCIQERDRAKGIDWGSEKPFMYHCHVDPDGNYTFKGPYLQAGQTHLQRVLGDENVLVVKF 416
             C +   R + +DW S +  +YHCHV  DG+YTFKGPYL+A +THLQ+ LGDENVL+VKF
Sbjct: 301  LC-EHNKRVQYLDWDSGRTHLYHCHVHSDGSYTFKGPYLKAERTHLQQSLGDENVLIVKF 359

Query: 417  SGQMVEGAGRNSLIRCNSTTSPHQPNRNEGVGIYNSNSAYHRIREEGILVGLRRYCFFVF 596
                                              N+      I + GILVGLRRY FFV+
Sbjct: 360  E--------------------------------QNTPGCPEEIVQNGILVGLRRYRFFVY 387

Query: 597  XXXXXXXXXXXXXSPTSSSVKCYFVCIDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHN 776
                             S VKCYFV ++ ++  +  T    IL  K V EAR  FMHVH 
Sbjct: 388  KDDGKKRSSKDKEEKIDS-VKCYFVRMESLNPYEKETY---ILRDKMVHEARCNFMHVHM 443

Query: 777  VSSIAKYMARFSLILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGT 956
            VSS+AKYMARFSL LS T+KL +D  SV ++ IEDI C D+ G I+Y+EDG+P IHTDGT
Sbjct: 444  VSSMAKYMARFSLTLSTTVKLQVDLNSVNIDRIEDICCHDKSGRIIYDEDGKPLIHTDGT 503

Query: 957  GFISQDLALKCPRNIF--KGKCSSQSDLEKILLHQIAEEKSLGLEKSIKSYIGDPPLLIQ 1130
            G+IS+DLA KCP++ F  K +C++       +  ++ E  S   E   +S  G+PPLL+Q
Sbjct: 504  GYISEDLARKCPQDFFNVKHRCANLERYTNGV--KLGENSSELGEAEFQS--GEPPLLMQ 559

Query: 1131 FRMFHNGSAVKGTALVNKKLPRNTIQVRPSMIKVRSDLGHVNDEHMTNSFEVVATSMKPK 1310
             R+F+NG AVKGT LVN+KLPR TIQ+RPSMIKV +D   ++   M NS E+   S+KP+
Sbjct: 560  CRLFYNGLAVKGTLLVNRKLPRRTIQIRPSMIKVEAD-PRLSRAQMFNSLEINTPSLKPR 618

Query: 1311 RTNLSKYLIALLSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVA- 1487
             T LS+ LIALL+YGGVP  YF ++L + LE+T++ ++D+  AL+ A+++ + DD   A 
Sbjct: 619  NTYLSRTLIALLTYGGVPVEYFYDILNNTLEETQRLYSDEVTALKVAVNHRDRDDASTAT 678

Query: 1488 KMILCGIPLEESFLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVI 1667
             MI+ G+PL E +L   LS L + E   LK G+LP+ D++YLMGTADPT  L PH+VCVI
Sbjct: 679  SMIMAGVPLTEPYLWCCLSSLAKEERNGLKGGRLPIADTFYLMGTADPTDTLNPHEVCVI 738

Query: 1668 LESGQVSGDILVYKHPGLHFGDIHVLEATYVQELQNYVGDAKYGIFFPIVGLRSIADEIA 1847
            LE GQ+ G++LVY++PGLHFGDIH L A  V+ L + VG+AKYGIFF   G RS A EIA
Sbjct: 739  LEHGQIFGEVLVYRNPGLHFGDIHRLLAVPVKNLGDIVGNAKYGIFFSTKGPRSAATEIA 798

Query: 1848 NSDLDGDMYWVCRNTQLLNWFRPSTPWTQKHFSKNVPQPKPADFSDEDRLEHYLFEKFLA 2027
            N D DGD YWV +N QLL +F  S PW++ H +      +P +FS E+R EH LF+ FL 
Sbjct: 799  NGDFDGDKYWVSQNPQLLKYFTASRPWSRIHSTPKTLHREPNNFSAEER-EHDLFQTFLE 857

Query: 2028 ARFSSNNVGVAAICWLGLMDTRLTLDESNA---EKIKEVEDKLLHLTDIYYDALDVAKSG 2198
             R  + ++  A+  W  LMD  L L ++N    E+IK V++KL  L D+YYDA+D  KSG
Sbjct: 858  TRMPNYSMADASANWYALMDRLLILGKNNTTENEEIKSVKEKLFELIDLYYDAIDAPKSG 917

Query: 2199 KK 2204
             K
Sbjct: 918  NK 919


>ref|XP_006296898.1| hypothetical protein CARUB_v10012890mg [Capsella rubella]
            gi|482565607|gb|EOA29796.1| hypothetical protein
            CARUB_v10012890mg [Capsella rubella]
          Length = 998

 Score =  600 bits (1547), Expect = e-169
 Identities = 351/719 (48%), Positives = 449/719 (62%), Gaps = 9/719 (1%)
 Frame = +3

Query: 75   LQALNQLDFKKQFLILSYCGKKKLHDVISVDTIKSMQHMQMSCFEPQLWRLLGRHCIQER 254
            L AL +L+FKK FL+LSY G K L +VIS D I+  + + M  +E ++W  LG     ++
Sbjct: 149  LVALGELEFKKMFLLLSYLGGKPL-EVISGDDIRQWKDLPMVSYEAEVWFQLGERYCSKK 207

Query: 255  DRAKGIDWGSEKPFMYHCHVDPDGNYTFK------GPYLQAGQTHLQRVLGDENVLVVKF 416
            +R + ++  SEK   Y CHV  DG+Y FK      G  L+   THL +VLGD+NVL VKF
Sbjct: 208  ERRRSLEGDSEKTHYYQCHVATDGSYKFKVGSPNSGHLLENTGTHLHKVLGDDNVLTVKF 267

Query: 417  SGQMVEGAGRNSLIRCNSTTSPHQPNRNEGVGIYNSNSAYHRIREEGILVGLRRYCFFVF 596
                         + C  T      N N      N  S Y  I + GI+VGLRRY FFVF
Sbjct: 268  DD-----------MSCTET------NCN------NLYSTYEGIAKNGIMVGLRRYQFFVF 304

Query: 597  XXXXXXXXXXXXXSPTSSSVKCYFVCIDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHN 776
                           +   VKCYF+        D     P IL   S+ EAR  FMHV+N
Sbjct: 305  KDGGKEGKKKDF---SRQGVKCYFIRTGSTALSDMEN--PYILDGMSIHEARMHFMHVYN 359

Query: 777  VSSIAKYMARFSLILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGT 956
            + S A YMARFSLILSKT KL++D   +  E+I+DI C DQD   V +++G+P IH+DGT
Sbjct: 360  LPSPANYMARFSLILSKTKKLEMDMTGITFEKIDDIHCHDQDNHDVLDKNGKPCIHSDGT 419

Query: 957  GFISQDLALKCPRNIFKGKCSSQSDLEKILLHQIAEEKSLGLEKSIKSYIG-DPPLLIQF 1133
            G+IS+DLA  CP NIFKGK    ++                    IK   G DPPLLIQF
Sbjct: 420  GYISEDLARMCPINIFKGKSIRSNN--------------------IKGTCGEDPPLLIQF 459

Query: 1134 RMFHNGSAVKGTALVNKKLPRNTIQVRPSMIKVRSDLGHVNDEHMTNSFEVVATSMKPKR 1313
            RMF+ G AVKGT L NKKLP  T+QVRPSMIKV  D   +N     NS EVV TS  PK 
Sbjct: 460  RMFYKGYAVKGTFLSNKKLPPQTVQVRPSMIKVYEDQALLNFSTF-NSLEVVNTSNPPKM 518

Query: 1314 TNLSKYLIALLSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKM 1493
            T LS+ LIALLSYGGVP+ +FL +L   LE++K     +RAA++AA++YG+MDD   A+M
Sbjct: 519  TRLSRNLIALLSYGGVPNDFFLNILRKTLEESKTIFYSERAAIKAAINYGDMDDQNTAEM 578

Query: 1494 ILCGIPLEESFLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILE 1673
            IL  IPL+E  LK RLS+L++TE  +LKEG+LP+ +SYYLMGT DPTG LK ++VCVILE
Sbjct: 579  ILVDIPLDEPHLKDRLSILLKTEKNALKEGRLPIGESYYLMGTVDPTGELKENEVCVILE 638

Query: 1674 SGQVSGDILVYKHPGLHFGDIHVLEATYVQELQNYVGDAKYGIFFPIVGLRSIADEIANS 1853
            +GQ+SG++LVY++PGLHFGDIHVL+ATYV+ L++YVG++KY +FFP  G RS+ DEIA  
Sbjct: 639  TGQISGNVLVYRNPGLHFGDIHVLKATYVKALEDYVGNSKYAVFFPQKGPRSLGDEIAGG 698

Query: 1854 DLDGDMYWVCRNTQLLNWFRPSTPW-TQKHFSKNVPQPKPADFSDEDRLEHYLFEKFLAA 2030
            D DGDMY++ RN QLL  F+PS PW +    SK     KP++ S E+ LE  LF+ FL A
Sbjct: 699  DFDGDMYFISRNPQLLEHFKPSEPWVSSSKPSKVYSGRKPSELSHEE-LEEELFKLFLDA 757

Query: 2031 RFSSNNV-GVAAICWLGLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAKSGKK 2204
            RF   +V G+AA  WL +MD  L+L + +A+K  +    LL L DIYYDALD  K G K
Sbjct: 758  RFCKRDVIGMAADSWLAIMDRFLSLGDESAKKKHKSNKNLLKLIDIYYDALDAPKKGAK 816


>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
            vesca subsp. vesca]
          Length = 1405

 Score =  596 bits (1536), Expect = e-167
 Identities = 350/730 (47%), Positives = 459/730 (62%), Gaps = 13/730 (1%)
 Frame = +3

Query: 54   KPKTSG--HLQALNQLDFKKQFLILSYCGKKKLHDVISVDTIKSMQHMQMSCFEPQLWRL 227
            KP+  G  HL AL +L++++QFLILSY G  KL D+I  + I+  + + M  FE  +W  
Sbjct: 539  KPEDHGEAHLAALGELEYRRQFLILSYAGGMKLRDLIVAEAIRHWKDLPMVMFESTVWEH 598

Query: 228  LGRHCIQERDRAKGIDWGSEKPFMYHCHVDPDGNYTFKGPYL-QAGQTHLQRVLGDENVL 404
            LGR CI   DR    DW S    +YHC+V+ DG+Y FKGPYL +  +T LQ+ LGD+NVL
Sbjct: 599  LGRKCISTEDRRLYFDWDSGSTHVYHCYVNVDGSYRFKGPYLYKIRRTLLQKELGDDNVL 658

Query: 405  VVKFSGQMVEGAGRNSLIRCNSTTSPHQPNRNEGVGIYNSNSAYHRIREEGILVGLRRYC 584
            +VKF+ + V+                    R +  G  ++   Y ++  EGILVGLRRY 
Sbjct: 659  MVKFAKEEVQ--------------------RGQS-GACHNYPTYMKVAREGILVGLRRYR 697

Query: 585  FFVFXXXXXXXXXXXXXSPTSSSVKCYFVCID---CVDSDDPLTIAPSILFCKSVSEARS 755
            FFVF             +PTSS VKCYFV +     +D      ++   ++     EAR 
Sbjct: 698  FFVFKDGGNEEKKK---NPTSSPVKCYFVRVASDAAIDKGVYYRLSHMTMY-----EARC 749

Query: 756  LFMHVHNVSSIAKYMARFSLILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEP 935
            LFMH H ++SI  YMARFSLILSKT+ L  D++ V+VE I++  C D+ G  +Y ++ +P
Sbjct: 750  LFMHAHTLASIDNYMARFSLILSKTMSLKADWSLVKVEIIDEEYCLDESGNCIYRDE-KP 808

Query: 936  RIHTDGTGFISQDLALKCPRNIFKGKCSSQSDLEKILLHQIAEEKSLGLEKSIKSYIG-- 1109
             IHTDGTGFIS+DLAL CP+   KG+  S   ++ +            L+ + K+  G  
Sbjct: 809  LIHTDGTGFISEDLALLCPKIEAKGQWISDEHMKGL-------PDPDELDDTGKNRAGLR 861

Query: 1110 --DPPLLIQFRMFHNGSAVKGTALVNKKLPRNTIQVRPSMIKVRSDLGHVNDEHMTNSFE 1283
              +PPLLIQ R+FHNGSA KGT LVNKKL  N IQ+RPSM+KV++D    N++ + NS E
Sbjct: 862  TEEPPLLIQCRLFHNGSASKGTLLVNKKLQPNRIQIRPSMLKVKTDPVISNNQTL-NSLE 920

Query: 1284 VVATSMKPKRTNLSKYLIALLSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYG 1463
            +V TS  P+ T+LS+ LIALL +GGVP+ +F+++L  ALED+      KRAAL+ A  YG
Sbjct: 921  IVGTSTPPRNTHLSRILIALLVHGGVPEEFFMQILNKALEDSHGVFCKKRAALKVAEKYG 980

Query: 1464 EMDD-FLVAKMILCGIPLEESFLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGI 1640
            EMDD FL   MI  GIPLEES+L+ RLSVLM+ E  SL++G+L + DSY LMGTADPTG 
Sbjct: 981  EMDDNFLGRLMISFGIPLEESYLRYRLSVLMKEENNSLRKGRLYIPDSYNLMGTADPTGT 1040

Query: 1641 LKPHQVCVILESGQVSGDILVYKHPGLHFGDIHVLEATYVQELQNYVGDAKYGIFFPIVG 1820
            LK  +VC     GQ+SG +LVY++PGLH GDIHVL+ATYV+E++  VG+AKYGIFF   G
Sbjct: 1041 LKEDEVC----DGQLSGKVLVYRYPGLHIGDIHVLKATYVKEIEYIVGNAKYGIFFSCKG 1096

Query: 1821 LRSIADEIANSDLDGDMYWVCRNTQLLNWFRPSTPWTQKHFS-KNVPQPKPADFSDEDRL 1997
             RSIADE+   D DGD+YWV RN QLL W++PS PW +   S K  P   P+D S ED L
Sbjct: 1097 PRSIADEMGGGDFDGDLYWVSRNPQLLEWYKPSEPWIEASISTKKNPSRCPSDHSPED-L 1155

Query: 1998 EHYLFEKFLAARFS-SNNVGVAAICWLGLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYD 2174
            E  LF  FL  RF  S  +  AA  WL  MD  LTL +SN  +   V++K+L L D+YY 
Sbjct: 1156 EDVLFRSFLTTRFEPSFAMSEAADNWLAWMDHFLTLGDSNIHEKNNVKEKILQLVDLYYT 1215

Query: 2175 ALDVAKSGKK 2204
            ALD AK G K
Sbjct: 1216 ALDAAKKGVK 1225


>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
            gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 3;
            Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
            3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 992

 Score =  595 bits (1533), Expect = e-167
 Identities = 339/716 (47%), Positives = 455/716 (63%), Gaps = 6/716 (0%)
 Frame = +3

Query: 75   LQALNQLDFKKQFLILSYCGKKKL-HDVISVDTIKSMQHMQMSCFEPQLWRLLGRHCIQE 251
            L AL +L+FKK FL+LSY G + L  +VIS D I+  + + M  +E  +W  LG+     
Sbjct: 140  LLALGELEFKKAFLLLSYIGGESLVEEVISGDQIRKWKDLPMVSYEAAVWNRLGQRYCSP 199

Query: 252  RDRAKGIDWGSEKPFMYHCHVDPDGNYTFKGPYLQAGQTHLQRVLGDENVLVVKFSGQMV 431
            ++R + ++  S     Y CHV  DG+Y FKG  L+   THL +VLGD+NVL VKF   + 
Sbjct: 200  KERRRPLEGDSGMTHYYQCHVATDGSYKFKGHLLENTGTHLHKVLGDDNVLTVKFDKVL- 258

Query: 432  EGAGRNSLIRCNSTTSPHQPNRNEGVGIYNSN--SAYHRIREEGILVGLRRYCFFVFXXX 605
                                    GV  Y ++  S Y  I + GI+VGLRRY FFVF   
Sbjct: 259  ------------------------GVETYCNDLYSTYKGIAKNGIMVGLRRYRFFVFKDG 294

Query: 606  XXXXXXXXXXSPTSSSVKCYFVCIDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNVSS 785
                        ++  VKCYF+  D   S D     P I   KS+ EAR  FMHV+ +SS
Sbjct: 295  GKEEKKKDV---STKGVKCYFIRTDSTASIDMQN--PYIFAGKSMHEARMHFMHVNTLSS 349

Query: 786  IAKYMARFSLILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFI 965
            +  YM+RFSLILSKT  L++D   +  E+I+DI C DQD   V +++G+P IH+DGTG+I
Sbjct: 350  LPNYMSRFSLILSKTKTLEVDMTGITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDGTGYI 409

Query: 966  SQDLALKCPRNIFKGKCSSQSDLEKILLHQIAEEKSLGLEKSIKSYIG-DPPLLIQFRMF 1142
            S+DLA  CP NIFKGK    ++++          K+L  E   +   G +PPLLIQFR+F
Sbjct: 410  SEDLARMCPVNIFKGKSMRSNNIQS---------KNLNFEG--QGPCGQEPPLLIQFRIF 458

Query: 1143 HNGSAVKGTALVNKKLPRNTIQVRPSMIKVRSDLGHVNDEHMTNSFEVVATSMKPKRTNL 1322
            +NG AVKGT L NKKLP  T+QVRPSMIKV  D   +++    NS EVV TS  P++  L
Sbjct: 459  YNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRT-LSNLSTFNSLEVVTTSNPPRKARL 517

Query: 1323 SKYLIALLSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILC 1502
            S+ L+ALLSYGGVP+ +FL +L + LE++K     +RAA +AA++YG  DD   A MIL 
Sbjct: 518  SRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYG--DDQYTADMILV 575

Query: 1503 GIPLEESFLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQ 1682
            GIPL+E +LK RLS L++TE  +LK G+ P+++SYY+MGT DPTG LK +++CVIL SGQ
Sbjct: 576  GIPLDEPYLKDRLSYLLKTERNALKAGRFPIDESYYIMGTVDPTGELKENEICVILHSGQ 635

Query: 1683 VSGDILVYKHPGLHFGDIHVLEATYVQELQNYVGDAKYGIFFPIVGLRSIADEIANSDLD 1862
            +SGD+LVY++PGLHFGDIHVL+ATYV+ L++YVG+AK+ +FFP  G RS+ DEIA  D D
Sbjct: 636  ISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFD 695

Query: 1863 GDMYWVCRNTQLLNWFRPSTPW-TQKHFSKNVPQPKPADFSDEDRLEHYLFEKFLAARFS 2039
            GDMY++ RN +LL  F+PS PW +    SK     KP++ S+E+ LE  LF+ FL ARF 
Sbjct: 696  GDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEE-LEEELFKMFLKARFC 754

Query: 2040 SNNV-GVAAICWLGLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAKSGKK 2204
              +V G+AA CWLG+MD  LTL + +A++  E +  +L L DIYYDALD  K G K
Sbjct: 755  KRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAK 810


>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
            sativus]
          Length = 1056

 Score =  593 bits (1530), Expect = e-167
 Identities = 340/649 (52%), Positives = 430/649 (66%), Gaps = 4/649 (0%)
 Frame = +3

Query: 270  IDWGSEKPFMYHCHVDPDGNYTFKGPYLQAGQTHLQRVLGDENVLVVKFSGQMVEGAGRN 449
            +DW   K  +YHCHV  DG+  FKGP+L   +THLQRVLGD+NVL+VKF+          
Sbjct: 257  VDWDRRKTHIYHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAED-------- 308

Query: 450  SLIRCNSTTSPHQPNRNEGVGIYNSNSAYHRIREEGILVGLRRYCFFVFXXXXXXXXXXX 629
               + ++  S H      G   Y    AY +I  +GIL+GLRRY FFVF           
Sbjct: 309  ---KSDTPLSNHS-----GGSFY----AYSKIARDGILLGLRRYHFFVFKDGGKEEKKK- 355

Query: 630  XXSPTSSSVKCYFVCIDCVDSDDPLTIAPSILFCKSVSEARSLFMHVHNVSSIAKYMARF 809
              +PT+S+VKCYFV ++     D   I P  L  ++V EARSLFMH H VSSIA YMARF
Sbjct: 356  --NPTTSAVKCYFVRMESDAYIDK--IEPYKLSNRTVFEARSLFMHAHMVSSIASYMARF 411

Query: 810  SLILSKTIKLDIDFASVRVEEIEDIACRDQDGCIVYNEDGEPRIHTDGTGFISQDLALKC 989
            SLILSKTI L ID ++V V+ I DI C+D  G ++Y  DG+P IHTDGTGFIS+DLAL+C
Sbjct: 412  SLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIYR-DGKPLIHTDGTGFISEDLALEC 470

Query: 990  PRNIFKGKCSSQSDLEKILLHQIAEE--KSLGLEKSIKSY-IGDPPLLIQFRMFHNGSAV 1160
            P N+FKG+    +DL+ I     A E  ++  L+ ++    + +PPLLIQFR+F+NG AV
Sbjct: 471  PMNVFKGQAKHDADLKAIWQRIPAFEGFQNKTLQLTLPGLELREPPLLIQFRLFYNGLAV 530

Query: 1161 KGTALVNKKLPRNTIQVRPSMIKVRSDLGHVNDEHMTNSFEVVATSMKPKRTNLSKYLIA 1340
            KGT L+NK+LP  TIQ+R SMIKV  D    N E   NS E+V TS  PKRT LS+ LIA
Sbjct: 531  KGTFLLNKQLPPRTIQIRDSMIKVEIDPDLENFE-TENSLELVGTSNPPKRTFLSRNLIA 589

Query: 1341 LLSYGGVPDGYFLELLTDALEDTKKFHNDKRAALRAALHYGEMDDFLVAKMILCGIPLEE 1520
            LL+YGGVP  YF+ +L DAL+D +   + KRAALR +++ GEMDDFLVA+MIL GIPL+E
Sbjct: 590  LLNYGGVPREYFMNILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDE 649

Query: 1521 SFLKARLSVLMRTELKSLKEGKLPMNDSYYLMGTADPTGILKPHQVCVILESGQVSGDIL 1700
            S+L+ RLSVL++ E KSLK G+L + + YYLMGT DPT  L+  +VCVIL +GQ++G +L
Sbjct: 650  SYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTFTLESGEVCVILYNGQINGKVL 709

Query: 1701 VYKHPGLHFGDIHVLEATYVQELQNYVGDAKYGIFFPIVGLRSIADEIANSDLDGDMYWV 1880
            VY++PGLHFGDIHVL A YV++L   VG+AKY IFF   G RS+ADEIA  D DGDMYWV
Sbjct: 710  VYRNPGLHFGDIHVLTAKYVEKLVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWV 769

Query: 1881 CRNTQLLNWFRPSTPWTQKHFSKNVPQPKPADFSDEDRLEHYLFEKFLAARFS-SNNVGV 2057
             RN+QLL +FRP  PW     ++ V   KP +FS  D LE+ LF+ FL+ RF  S    V
Sbjct: 770  SRNSQLLEYFRPCEPWRPSPSTEVVTNKKPKEFS-ADELENELFKLFLSTRFQPSYAKSV 828

Query: 2058 AAICWLGLMDTRLTLDESNAEKIKEVEDKLLHLTDIYYDALDVAKSGKK 2204
            AA  WL LMD  L L E   E+   +  K+L L +IYYDALD  K G K
Sbjct: 829  AADNWLALMDQFLMLGEERKEERNCIRAKILQLINIYYDALDAPKKGGK 877