BLASTX nr result
ID: Papaver25_contig00009727
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver25_contig00009727
(1210 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAH67938.1| H0211F06-OSIGBa0153M17.10 [Oryza sativa Indica G... 100 2e-18
emb|CAH66018.1| OSIGBa0105N24.2 [Oryza sativa Indica Group] 99 3e-18
ref|XP_004292968.1| PREDICTED: uncharacterized protein LOC101315... 98 6e-18
gb|AAV31295.1| putative polyprotein [Oryza sativa Japonica Group] 98 8e-18
gb|AAT85240.1| putative polyprotein [Oryza sativa Japonica Group] 98 8e-18
gb|AAU44115.1| putative polyprotein [Oryza sativa Japonica Group] 97 1e-17
dbj|BAH80066.1| putative retrotransposon protein [Oryza sativa I... 97 1e-17
gb|EYU31709.1| hypothetical protein MIMGU_mgv1a024293mg, partial... 97 2e-17
gb|ABA98110.1| retrotransposon protein, putative, Ty3-gypsy subc... 96 2e-17
gb|ABA92240.1| retrotransposon protein, putative, Ty3-gypsy subc... 96 2e-17
gb|ABB46940.2| retrotransposon protein, putative, Ty3-gypsy subc... 96 2e-17
gb|AAM74297.1|AC083944_15 Putative retroelement [Oryza sativa Ja... 96 2e-17
gb|ABA97812.1| retrotransposon protein, putative, Ty3-gypsy subc... 96 4e-17
gb|AAL83344.1|AC074282_11 Putative polyprotein [Oryza sativa Jap... 96 4e-17
dbj|BAH80025.1| putative retrotransposon protein [Oryza sativa I... 96 4e-17
gb|ABF95989.1| retrotransposon protein, putative, Ty3-gypsy subc... 95 5e-17
gb|ABA98151.1| retrotransposon protein, putative, Ty3-gypsy subc... 95 7e-17
dbj|BAH80026.1| putative retrotransposon protein [Oryza sativa I... 95 7e-17
emb|CAH67149.1| OSIGBa0122F23.6 [Oryza sativa Indica Group] 95 7e-17
emb|CAH66120.1| OSIGBa0146N20.5 [Oryza sativa Indica Group] 95 7e-17
>emb|CAH67938.1| H0211F06-OSIGBa0153M17.10 [Oryza sativa Indica Group]
Length = 1621
Score = 100 bits (248), Expect = 2e-18
Identities = 86/299 (28%), Positives = 124/299 (41%), Gaps = 22/299 (7%)
Frame = +2
Query: 233 RNQNQPGQL---LQQYLKLSSEIFSSSPPDPEMAEEWFQNAEHVLQHVTKDRDTWVDLVT 403
+NQN P L L +L++ FSS+ +P A +W E L + V +
Sbjct: 320 QNQNPPPPLQNKLADFLRVRPPTFSSTT-NPVEAGDWLHAVEKKLDLIQCTEQEKVSFAS 378
Query: 404 FNFRGPSRDW*KEVSE--AEGETMTWNRFKALFIDKYVHDAARNRKFYEFMSLTKGGMSV 577
GP+ +W + AEGE +TW F A F ++ K EF +L +G SV
Sbjct: 379 HQLHGPAAEWWDHFRQGRAEGEPITWQEFTAAFKKTHIPTGVVALKKREFRALNQGSRSV 438
Query: 578 SAYNDKFSRLSRYGEGLITTDEAITKKFIRGLNPEM*KQLSCLLIKTYEDSLNRSLDYEK 757
+ Y D F+RL+RY + TDE +KF+ GLN E LS L+ T + +D
Sbjct: 439 TEYLDDFNRLARYAPEDVRTDEERQEKFLEGLNDE----LSYALMSTDFRDFQQLVDKAI 494
Query: 758 EMEDQL--ATRVRERP*QFLARLGQAKRPMLSASNQTNFRPP------VRP--------- 886
ED+ + + R QF A+ G +RP L Q P VRP
Sbjct: 495 RQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLVTGPQAPSYPQGGSSSVVRPQRQFYNNNT 554
Query: 887 WSTGSASVPPATRPPSVRPQGRWVRFQ*VCPTAPTSSGMSSFRCHGCGEWGHFKKDCPK 1063
+ G+ + RP + Q + VR G C CG+ GH+ CPK
Sbjct: 555 GNRGNDNRNVVARPAATPAQNQPVR---------KEQGSKPVVCFNCGDPGHYADKCPK 604
>emb|CAH66018.1| OSIGBa0105N24.2 [Oryza sativa Indica Group]
Length = 1608
Score = 99.4 bits (246), Expect = 3e-18
Identities = 79/293 (26%), Positives = 125/293 (42%), Gaps = 17/293 (5%)
Frame = +2
Query: 236 NQNQ-----PGQLLQQYLKLSSEIFSSSPPDPEMAEEWFQNAEHVLQHVTKDRDTWVDLV 400
NQNQ P L +L++ FSS+ +P A +W E L + V
Sbjct: 219 NQNQNPPPPPQNKLADFLRVRHPTFSSTT-NPVEARDWLHAVEKKLDLIQCTEQEKVSFA 277
Query: 401 TFNFRGPSRDW*KEVSE--AEGETMTWNRFKALFIDKYVHDAARNRKFYEFMSLTKGGMS 574
+ GP+ +W + AEGE +TW F A F ++ K EF +L +G S
Sbjct: 278 SHQLHGPAAEWWDHFRQGRAEGEPITWQEFTAAFKKTHIPAGVVALKKREFRALNQGSRS 337
Query: 575 VSAYNDKFSRLSRYGEGLITTDEAITKKFIRGLNPEM*KQLSCLLIKTYEDSLNRSLDYE 754
V+ Y F+RL+RY + TDE +KF+ GLN E+ L + +++ +++++ E
Sbjct: 338 VTEYLHDFNRLARYAPEDVRTDEERQEKFLEGLNDELSYALMSTDFRDFQELVDKAIRQE 397
Query: 755 KEMEDQLATRVRERP*QFLARLGQAKRPMLSASNQTNFRPPVRPWSTGSASVPPATR--P 928
+ + + R QF A+ G +RP L Q P+ P S+ + P +
Sbjct: 398 DKYNRM--KQKKRRAAQFKAQQGSNQRPRLVTGPQA----PLYPQGGSSSVIRPQRQFYN 451
Query: 929 PSVRPQGRWVRFQ*VCPTAP--------TSSGMSSFRCHGCGEWGHFKKDCPK 1063
+ +G R+ V P A G C CG+ GH+ CPK
Sbjct: 452 NNTGNRGNDNRYMVVRPAATPVQNQPVRKEQGSKPVVCFNCGDPGHYADKCPK 504
>ref|XP_004292968.1| PREDICTED: uncharacterized protein LOC101315313 [Fragaria vesca
subsp. vesca]
Length = 229
Score = 98.2 bits (243), Expect = 6e-18
Identities = 57/190 (30%), Positives = 95/190 (50%), Gaps = 7/190 (3%)
Frame = +2
Query: 221 IMPTRNQNQPGQLLQQYLKLSSEIFSSSPP------DPEMAEEWFQNAEHVLQHVTKDRD 382
I RN N ++ +++ E + PP DP +AEEW + + L + D
Sbjct: 27 IRENRNGNHQEGNEERVMRIQGEFRKARPPIFKGILDPMVAEEWLRQMKRTLNNQKVPED 86
Query: 383 TWVDLVTFNFRGPSRDW*KEV-SEAEGETMTWNRFKALFIDKYVHDAARNRKFYEFMSLT 559
V + + W + V + + E TWN F+ +F++KY D R K EFM L+
Sbjct: 87 LKVIVACTYLESAAYHWWESVLATPDIEITTWNAFEVVFLEKYFPDIVRQAKAKEFMFLS 146
Query: 560 KGGMSVSAYNDKFSRLSRYGEGLITTDEAITKKFIRGLNPEM*KQLSCLLIKTYEDSLNR 739
KG M+V+ Y KF L R+ G+I + A KF LNPE+ + +S L ++ Y + ++R
Sbjct: 147 KGNMTVAEYQGKFEELMRFAPGIIPNEAAKAMKFEEWLNPEIREMVSILKLQKYSEVVDR 206
Query: 740 SLDYEKEMED 769
+L E+ +++
Sbjct: 207 ALIAERSIQE 216
>gb|AAV31295.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1374
Score = 97.8 bits (242), Expect = 8e-18
Identities = 85/295 (28%), Positives = 123/295 (41%), Gaps = 19/295 (6%)
Frame = +2
Query: 236 NQNQ-----PGQLLQQYLKLSSEIFSSSPPDPEMAEEWFQNAEHVLQHVTKDRDTWVDLV 400
NQNQ P L +L + FSS+ +P A +W E L + V
Sbjct: 54 NQNQNPPPPPQNKLADFLHVRPPTFSSTT-NPVEAGDWLHAVEKKLDLIQCTEQEKVSFA 112
Query: 401 TFNFRGPSRDW*KEVSE--AEGETMTWNRFKALFIDKYVHDAARNRKFYEFMSLTKGGMS 574
+ GP+ +W + AEGE +TW F A F ++ K EF +L +G S
Sbjct: 113 SHQLHGPAAEWWDHFRQGRAEGEPITWQEFTAAFKKTHIPSGVVALKKREFRALNQGSRS 172
Query: 575 VSAYNDKFSRLSRYGEGLITTDEAITKKFIRGLNPEM*KQLSCLLIKTYEDSLNRSLDYE 754
V+ Y F+RL+RY + TDE +KF+ GLN E LS L+ T + +D
Sbjct: 173 VTEYLHDFNRLARYAPEDVRTDEERQEKFLEGLNDE----LSYALMSTDFRDFQQLVDKA 228
Query: 755 KEMEDQL--ATRVRERP*QFLARLGQAKRPMLSASNQTNFRPPVRPWSTGSASVPPATR- 925
ED+ + + R QF A+ G +RP L Q P P S+ V P +
Sbjct: 229 IRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLVTGPQA----PSYPQGGSSSVVRPQRQF 284
Query: 926 -PPSVRPQGRWVRFQ*VCPTAPTS--------SGMSSFRCHGCGEWGHFKKDCPK 1063
+ +G R V P A ++ G + C CG+ GH+ CPK
Sbjct: 285 YNNNTGNRGNDNRNMVVHPAATSAQNQPVRKEQGSKTVTCFNCGDLGHYADKCPK 339
>gb|AAT85240.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1472
Score = 97.8 bits (242), Expect = 8e-18
Identities = 85/295 (28%), Positives = 123/295 (41%), Gaps = 19/295 (6%)
Frame = +2
Query: 236 NQNQ-----PGQLLQQYLKLSSEIFSSSPPDPEMAEEWFQNAEHVLQHVTKDRDTWVDLV 400
NQNQ P L +L + FSS+ +P A +W E L + V
Sbjct: 54 NQNQNPPPPPQNKLADFLHVRPPTFSSTT-NPVEAGDWLHAVEKKLDLIQCTEQEKVSFA 112
Query: 401 TFNFRGPSRDW*KEVSE--AEGETMTWNRFKALFIDKYVHDAARNRKFYEFMSLTKGGMS 574
+ GP+ +W + AEGE +TW F A F ++ K EF +L +G S
Sbjct: 113 SHQLHGPAAEWWDHFRQGRAEGEPITWQEFTAAFKKTHIPSGVVALKKREFRALNQGSRS 172
Query: 575 VSAYNDKFSRLSRYGEGLITTDEAITKKFIRGLNPEM*KQLSCLLIKTYEDSLNRSLDYE 754
V+ Y F+RL+RY + TDE +KF+ GLN E LS L+ T + +D
Sbjct: 173 VTEYLHDFNRLARYAPEDVRTDEERQEKFLEGLNDE----LSYALMSTDFRDFQQLVDKA 228
Query: 755 KEMEDQL--ATRVRERP*QFLARLGQAKRPMLSASNQTNFRPPVRPWSTGSASVPPATR- 925
ED+ + + R QF A+ G +RP L Q P P S+ V P +
Sbjct: 229 IRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLVTGPQA----PSYPQGGSSSVVRPQRQF 284
Query: 926 -PPSVRPQGRWVRFQ*VCPTAPTS--------SGMSSFRCHGCGEWGHFKKDCPK 1063
+ +G R V P A ++ G + C CG+ GH+ CPK
Sbjct: 285 YNNNTGNRGNDNRNMVVHPAATSAQNQPVRKEQGSKTVTCFNCGDLGHYADKCPK 339
>gb|AAU44115.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1717
Score = 97.4 bits (241), Expect = 1e-17
Identities = 85/300 (28%), Positives = 122/300 (40%), Gaps = 24/300 (8%)
Frame = +2
Query: 236 NQNQ-----PGQLLQQYLKLSSEIFSSSPPDPEMAEEWFQNAEHVLQHVTKDRDTWVDLV 400
NQNQ P L +L++ FSS+ +P A +W E L + V
Sbjct: 310 NQNQNPPPPPQNKLADFLRVRPPTFSSTT-NPVEAGDWLHAVEKKLDLIQCTEQEKVSFA 368
Query: 401 TFNFRGPSRDW*KEVSE--AEGETMTWNRFKALFIDKYVHDAARNRKFYEFMSLTKGGMS 574
+ GP+ +W + AEGE +TW F A F ++ K EF +L +G S
Sbjct: 369 SHQLHGPAAEWWDHFRQGRAEGEPITWQEFTAAFRKTHIPSGVVALKKREFRALNQGSRS 428
Query: 575 VSAYNDKFSRLSRYGEGLITTDEAITKKFIRGLNPEM*KQLSCLLIKTYEDSLNRSLDYE 754
V+ Y F+RL+RY + TDE +KF+ GLN E LS L+ T + +D
Sbjct: 429 VTEYLHDFNRLARYAPEDVRTDEERQEKFLEGLNDE----LSYALMSTDFRDFQQLVDKA 484
Query: 755 KEMEDQL--ATRVRERP*QFLARLGQAKRPMLSASNQTNFRPP------VRPW------- 889
ED+ + + R QF A+ G +RP L Q P VRP
Sbjct: 485 IRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLVTGPQVPSYPQGGSSSVVRPQRQFYNNN 544
Query: 890 --STGSASVPPATRPPSVRPQGRWVRFQ*VCPTAPTSSGMSSFRCHGCGEWGHFKKDCPK 1063
+ G+ + RP + Q + VR G C CG+ GH+ CPK
Sbjct: 545 TSNRGNDNRNVVARPAATSAQNQPVR---------KEQGSKPVICFNCGDPGHYADKCPK 595
>dbj|BAH80066.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 937
Score = 97.1 bits (240), Expect = 1e-17
Identities = 82/307 (26%), Positives = 129/307 (42%), Gaps = 17/307 (5%)
Frame = +2
Query: 236 NQNQ-----PGQLLQQYLKLSSEIFSSSPPDPEMAEEWFQNAEHVLQHVTKDRDTWVDLV 400
NQNQ P L +L++ FSS+ +P A +W E L + + V
Sbjct: 50 NQNQNPPPPPQNKLADFLRVRPPTFSSTT-NPVEAGDWLHAVEKKLDLIQCTKQEKVSFA 108
Query: 401 TFNFRGPSRDW*KEVSE--AEGETMTWNRFKALFIDKYVHDAARNRKFYEFMSLTKGGMS 574
+ GP+ +W + A GE +TW F A F ++ K EF +L +G S
Sbjct: 109 SHQLHGPAAEWWDHFRQGRAGGEPITWQEFTAAFKKTHIPSGVVALKKREFRALNQGSRS 168
Query: 575 VSAYNDKFSRLSRYGEGLITTDEAITKKFIRGLNPEM*KQLSCLLIKTYEDSLNRSLDYE 754
V+ Y F+RL+RY + TDE +KF+ GLN E+ L + + ++ +++++ E
Sbjct: 169 VTEYLHDFNRLARYAPEDVRTDEERQEKFLEGLNDELSYALMSMDFRDFQQLVDKAIRQE 228
Query: 755 KEMEDQLATRVRERP*QFLARLGQAKRPMLSASNQTNFRPP------VRP----WSTGSA 904
+ + + R QF A+ G +RP L Q P VRP ++ +
Sbjct: 229 DKYNRM--EQKKRRAAQFKAQQGSNQRPRLVTGPQVPSYPQGGSSSVVRPQRQFYNNNTG 286
Query: 905 SVPPATRPPSVRPQGRWVRFQ*VCPTAPTSSGMSSFRCHGCGEWGHFKKDCPKNPSTGLA 1084
+ R VRP V+ Q V G C CG+ GH+ CP+
Sbjct: 287 NRGNDNRNVVVRPAATPVQNQHV----RKEQGSKPVICFNCGDPGHYADKCPEPRRVKNV 342
Query: 1085 QQGAVYA 1105
+G V A
Sbjct: 343 PEGKVVA 349
>gb|EYU31709.1| hypothetical protein MIMGU_mgv1a024293mg, partial [Mimulus guttatus]
Length = 674
Score = 96.7 bits (239), Expect = 2e-17
Identities = 75/277 (27%), Positives = 127/277 (45%), Gaps = 9/277 (3%)
Frame = +2
Query: 260 LQQYLKLSSEIFSSSPPDPEMAEEWFQNAEHVLQHVTKDRDTW--------VDLVTFNFR 415
L+++L+L + F P DP AEEW L+ +T++ DT V +
Sbjct: 87 LREFLRLDTPTFHGEP-DPLAAEEW-------LEQITRNLDTSRITDGGMRVSFAVHQLK 138
Query: 416 GPSRDW*KEVSEAEGETMTWNRFKALFIDKYVHDAARNRKFYEFMSLTKGGMSVSAYNDK 595
G + W K V + + F +F+D+Y + R+ +FM L +G MSV+ Y K
Sbjct: 139 GDAYHWWKRVKLTVADN--FETFSRVFLDRYFPETTRDTFRQQFMDLIQGNMSVAHYEAK 196
Query: 596 FSRLSRYGEGLITTDEAITKKFIRGLNPEM*KQLSCLLIKTYEDSLNRSLDYEKEMEDQL 775
F+ L+R+ L++T+E K+F RGL + ++L+ L I+TY D ++ + E+ ++D
Sbjct: 197 FTSLARFANELVSTEELRCKRFERGLKISIRERLAALRIRTYSDIVDTAATVEETLQD-- 254
Query: 776 ATRVRERP*QFLARLGQAKRPMLSASN-QTNFRPPVRPWSTGSASVPPATRPPSVRPQGR 952
R+R+ RP + + R R S+ S S S +
Sbjct: 255 TRRIRD------------SRPQQGGNTIDSEGRFAKRQKSSNSVSHAQGKHQSS-----K 297
Query: 953 WVRFQ*VCPTAPTSSGMSSFRCHGCGEWGHFKKDCPK 1063
V + + PTA T + + CH + GH + DCP+
Sbjct: 298 SVHVESIAPTAHTPQSTTCYHCH---QPGHRRYDCPQ 331
>gb|ABA98110.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1226
Score = 96.3 bits (238), Expect = 2e-17
Identities = 83/295 (28%), Positives = 123/295 (41%), Gaps = 19/295 (6%)
Frame = +2
Query: 236 NQNQ-----PGQLLQQYLKLSSEIFSSSPPDPEMAEEWFQNAEHVLQHVTKDRDTWVDLV 400
NQNQ P L +L++ FSS+ +P A +W E L + V
Sbjct: 48 NQNQNPPPPPQNKLADFLRVRPPTFSSTT-NPVEAGDWLHAVEKKLDLIQCTEQEKVSFA 106
Query: 401 TFNFRGPSRDW*KEVSE--AEGETMTWNRFKALFIDKYVHDAARNRKFYEFMSLTKGGMS 574
+ GP+ +W + AEGE +TW F A F ++ K EF +L +G S
Sbjct: 107 SHQLHGPAAEWWDHFRQGRAEGEPITWQEFTAAFKKTHIPTGVVALKKREFRALNQGSRS 166
Query: 575 VSAYNDKFSRLSRYGEGLITTDEAITKKFIRGLNPEM*KQLSCLLIKTYEDSLNRSLDYE 754
V+ Y F+RL+RY + TDE +KF+ GLN E LS L+ T + +D
Sbjct: 167 VTEYLHDFNRLARYAPEDVRTDEERQEKFLEGLNDE----LSYALMSTDFRDFQQLVDKA 222
Query: 755 KEMEDQL--ATRVRERP*QFLARLGQAKRPMLSASNQTNFRPP------VRP----WSTG 898
ED+ + + R QF A+ G +RP L Q P +RP ++
Sbjct: 223 IRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLVTGPQAPLYPQGGSSSVIRPQRQFYNNN 282
Query: 899 SASVPPATRPPSVRPQGRWVRFQ*VCPTAPTSSGMSSFRCHGCGEWGHFKKDCPK 1063
+ + R RP + Q V + G+ C CG+ GH+ CPK
Sbjct: 283 TGNRGNDNRNMVARPVATLAQNQPVRKEQGSKPGV----CFNCGDPGHYADKCPK 333
>gb|ABA92240.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1319
Score = 96.3 bits (238), Expect = 2e-17
Identities = 84/295 (28%), Positives = 124/295 (42%), Gaps = 19/295 (6%)
Frame = +2
Query: 236 NQNQ-----PGQLLQQYLKLSSEIFSSSPPDPEMAEEWFQNAEHVLQHVTKDRDTWVDLV 400
NQNQ P L +L++ FSS+ +P A +W E L + V
Sbjct: 50 NQNQNPPPPPQNKLADFLRVRPPTFSSTT-NPVEAGDWLHAVEKKLDLIQYTEQEKVSFA 108
Query: 401 TFNFRGPSRDW*KEVSE--AEGETMTWNRFKALFIDKYVHDAARNRKFYEFMSLTKGGMS 574
+ GP+ +W + AEGE +TW F A F ++ K EF +L +G S
Sbjct: 109 SHQLHGPAAEWWDHFRQGRAEGEPITWQEFTAAFKKTHIPTGVVALKKREFRALNQGSRS 168
Query: 575 VSAYNDKFSRLSRYGEGLITTDEAITKKFIRGLNPEM*KQLSCLLIKTYEDSLNRSLDYE 754
V+ Y F+RL+RY + TDE +KF+ GLN E LS L+ T + +D
Sbjct: 169 VTEYLHDFNRLARYAPEDVRTDEERQEKFLEGLNDE----LSYALMSTDFRDFQQLVDKA 224
Query: 755 KEMEDQL--ATRVRERP*QFLARLGQAKRPMLSASNQTNFRPP------VRP----WSTG 898
ED+ + + + QF A+ G +RP L Q P VRP ++
Sbjct: 225 IRQEDKYNRMEQKKRKAAQFKAQQGSNQRPRLVTGPQAPSYPQGGSSSVVRPQRQFYNNN 284
Query: 899 SASVPPATRPPSVRPQGRWVRFQ*VCPTAPTSSGMSSFRCHGCGEWGHFKKDCPK 1063
+ + R RP V+ Q V + G+ C CG+ GH+ CPK
Sbjct: 285 TGNRGNDNRNMVARPAATPVQNQPVRKEQGSKPGV----CFNCGDPGHYADKCPK 335
>gb|ABB46940.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1244
Score = 96.3 bits (238), Expect = 2e-17
Identities = 80/294 (27%), Positives = 122/294 (41%), Gaps = 18/294 (6%)
Frame = +2
Query: 236 NQNQ-----PGQLLQQYLKLSSEIFSSSPPDPEMAEEWFQNAEHVLQHVTKDRDTWVDLV 400
NQNQ P L +L++ FSS+ +P A +W E L + V
Sbjct: 333 NQNQNPPPPPQNKLADFLRVRPPTFSSTT-NPVEAGDWLHAVEKKLDLIQCTEQEKVSFA 391
Query: 401 TFNFRGPSRDW*KEVSE--AEGETMTWNRFKALFIDKYVHDAARNRKFYEFMSLTKGGMS 574
+ GP+ +W + A GE +TW F A F ++ K EF +L +G S
Sbjct: 392 SHQLHGPAAEWWDHFRQGRAGGEPITWQEFTAAFKKTHIPSGVVALKKREFRALNQGSRS 451
Query: 575 VSAYNDKFSRLSRYGEGLITTDEAITKKFIRGLNPEM*KQLSCLLIKTYEDSLNRSLDYE 754
V+ Y F+RL+RY + TDE +KF+ GLN E+ L + ++ +++++
Sbjct: 452 VTEYLHDFNRLARYAPEDVRTDEERQEKFLEGLNDELSYALMATDFRDFQQLVDKAI--R 509
Query: 755 KEMEDQLATRVRERP*QFLARLGQAKRPMLSASNQTNFRPPVRPWSTGSASVPPATRP-- 928
+E + + + R QF A+ G +RP L Q P GS+SV R
Sbjct: 510 QEDKYNRIEQKKRRAAQFKAQQGSNQRPRLITGPQAPSYP-----QGGSSSVARPQRQFY 564
Query: 929 -PSVRPQGRWVRFQ*VCPTAP--------TSSGMSSFRCHGCGEWGHFKKDCPK 1063
+ +G R CP A G C CG+ GH+ CPK
Sbjct: 565 NNNTSNRGNDNRNMVACPAATPVQNQPVRKEQGSKPVICFNCGDPGHYADKCPK 618
>gb|AAM74297.1|AC083944_15 Putative retroelement [Oryza sativa Japonica Group]
Length = 974
Score = 96.3 bits (238), Expect = 2e-17
Identities = 80/294 (27%), Positives = 122/294 (41%), Gaps = 18/294 (6%)
Frame = +2
Query: 236 NQNQ-----PGQLLQQYLKLSSEIFSSSPPDPEMAEEWFQNAEHVLQHVTKDRDTWVDLV 400
NQNQ P L +L++ FSS+ +P A +W E L + V
Sbjct: 50 NQNQNPPPPPQNKLADFLRVRPPTFSSTT-NPVEAGDWLHAVEKKLDLIQCTEQEKVSFA 108
Query: 401 TFNFRGPSRDW*KEVSE--AEGETMTWNRFKALFIDKYVHDAARNRKFYEFMSLTKGGMS 574
+ GP+ +W + A GE +TW F A F ++ K EF +L +G S
Sbjct: 109 SHQLHGPAAEWWDHFRQGRAGGEPITWQEFTAAFKKTHIPSGVVALKKREFRALNQGSRS 168
Query: 575 VSAYNDKFSRLSRYGEGLITTDEAITKKFIRGLNPEM*KQLSCLLIKTYEDSLNRSLDYE 754
V+ Y F+RL+RY + TDE +KF+ GLN E+ L + ++ +++++
Sbjct: 169 VTEYLHDFNRLARYAPEDVRTDEERQEKFLEGLNDELSYALMATDFRDFQQLVDKAI--R 226
Query: 755 KEMEDQLATRVRERP*QFLARLGQAKRPMLSASNQTNFRPPVRPWSTGSASVPPATRP-- 928
+E + + + R QF A+ G +RP L Q P GS+SV R
Sbjct: 227 QEDKYNRIEQKKRRAAQFKAQQGSNQRPRLITGPQAPSYP-----QGGSSSVARPQRQFY 281
Query: 929 -PSVRPQGRWVRFQ*VCPTAP--------TSSGMSSFRCHGCGEWGHFKKDCPK 1063
+ +G R CP A G C CG+ GH+ CPK
Sbjct: 282 NNNTSNRGNDNRNMVACPAATPVQNQPVRKEQGSKPVICFNCGDPGHYADKCPK 335
>gb|ABA97812.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1702
Score = 95.5 bits (236), Expect = 4e-17
Identities = 84/300 (28%), Positives = 122/300 (40%), Gaps = 24/300 (8%)
Frame = +2
Query: 236 NQNQ-----PGQLLQQYLKLSSEIFSSSPPDPEMAEEWFQNAEHVLQHVTKDRDTWVDLV 400
NQNQ P L +L++ FSS+ +P A +W E L + V
Sbjct: 271 NQNQNPPPPPQNKLADFLRVRPPTFSSTT-NPVEAGDWLHAVEKKLDLIQCTEQEKVSFA 329
Query: 401 TFNFRGPSRDW*KEVSE--AEGETMTWNRFKALFIDKYVHDAARNRKFYEFMSLTKGGMS 574
+ GP+ +W + AEGE +TW F A F ++ K EF +L +G S
Sbjct: 330 SHQLHGPAAEWWDHFRQGRAEGEPITWQEFTAAFKKTHIPAGVVALKKREFRALNQGSRS 389
Query: 575 VSAYNDKFSRLSRYGEGLITTDEAITKKFIRGLNPEM*KQLSCLLIKTYEDSLNRSLDYE 754
V+ Y F+RL+RY + TDE +KF+ GLN E LS L+ T + +D
Sbjct: 390 VTEYLHDFNRLARYAPEDVRTDEERQEKFLEGLNDE----LSYALMSTDFRDFQQLVDKA 445
Query: 755 KEMEDQL--ATRVRERP*QFLARLGQAKRPMLSASNQTNFRPP------VRP-------- 886
ED+ + + R QF A+ G +RP L Q P +RP
Sbjct: 446 IRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLVIGPQAPSYPQGGSSSVIRPQRQFYNNN 505
Query: 887 -WSTGSASVPPATRPPSVRPQGRWVRFQ*VCPTAPTSSGMSSFRCHGCGEWGHFKKDCPK 1063
+ G+ + RP + Q + VR G C CG+ GH+ CPK
Sbjct: 506 TGNRGNDNRNVVARPAATPAQNQPVR---------KEQGSKPVVCFNCGDPGHYADKCPK 556
>gb|AAL83344.1|AC074282_11 Putative polyprotein [Oryza sativa Japonica Group]
gi|20042905|gb|AAM08733.1|AC116601_26 Putative
polyprotein [Oryza sativa Japonica Group]
gi|31429938|gb|AAP51922.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1443
Score = 95.5 bits (236), Expect = 4e-17
Identities = 87/309 (28%), Positives = 134/309 (43%), Gaps = 12/309 (3%)
Frame = +2
Query: 173 RHNSGSTSQPSNQRDMIMPTRNQNQPGQLLQQYLKLSSEIFSSSPPDPEMAEEWFQNAEH 352
R N + P+N + PT QN+ L ++L++ +FSS+ +P A +W E
Sbjct: 5 RSNGNGPNNPNNNNNGENPTLAQNK----LAEFLRVRPPVFSSTT-NPVEAGDWLHAIEK 59
Query: 353 VLQHVTKDRDTWVDLVTFNFRGPSRDW*KE--VSEAEGETMTWNRFKALFIDKYVHDAAR 526
L + V + GP+ +W ++ E +TW F A F ++
Sbjct: 60 KLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRITAEPITWLEFTAAFRKTHIPSGVV 119
Query: 527 NRKFYEFMSLTKGGMSVSAYNDKFSRLSRYGEGLITTDEAITKKFIRGLNPEM*KQLSCL 706
+ K EF SLT+G SV+ Y +F+RL+RY + DE +KF+ GLN E+ L
Sbjct: 120 SLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQEKFLGGLNDEL---SYPL 176
Query: 707 LIKTYEDSLNRSLDYEKEMEDQ--LATRVRERP*QFLARLGQAKRPMLSASNQTNFRPPV 880
++ Y D + +D ED+ + + R F A+ G ++P L+ Q+ P
Sbjct: 177 MVGDYPD-FQKLVDKAIRQEDKYNCMEQRKRRIAHFKAQQGSNQKPRLTLGPQS--MP-- 231
Query: 881 RPWSTGSASVPPATRPPSVRPQGRWVRFQ*VCP-TAPT-------SSGMSSFRCHGCGEW 1036
GS+SV R G +R Q P APT G S C CG+
Sbjct: 232 ---QGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAAPTQQQPAKREQGSKSVVCFNCGDP 288
Query: 1037 GHFKKDCPK 1063
GH+ CPK
Sbjct: 289 GHYADKCPK 297
>dbj|BAH80025.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1727
Score = 95.5 bits (236), Expect = 4e-17
Identities = 84/300 (28%), Positives = 122/300 (40%), Gaps = 24/300 (8%)
Frame = +2
Query: 236 NQNQ-----PGQLLQQYLKLSSEIFSSSPPDPEMAEEWFQNAEHVLQHVTKDRDTWVDLV 400
NQNQ P L +L++ FSS+ +P A +W E L + V
Sbjct: 296 NQNQNPPPPPQNKLADFLRVRPPTFSSTT-NPVEAGDWLHAVEKKLDLIQCTEQEKVSFA 354
Query: 401 TFNFRGPSRDW*KEVSE--AEGETMTWNRFKALFIDKYVHDAARNRKFYEFMSLTKGGMS 574
+ GP+ +W + A GE +TW F A F ++ K EF +L++G S
Sbjct: 355 SHQLHGPAAEWWDHFRQGRAGGEPITWQEFTAAFKKTHIPTGVVALKKREFRALSQGSRS 414
Query: 575 VSAYNDKFSRLSRYGEGLITTDEAITKKFIRGLNPEM*KQLSCLLIKTYEDSLNRSLDYE 754
V+ Y F+RL+RY + TDE +KF+ GLN E LS L+ T + +D
Sbjct: 415 VTEYLHDFNRLARYAPEDVRTDEERQEKFLEGLNDE----LSYTLMSTEFRDFQQLVDKA 470
Query: 755 KEMEDQL--ATRVRERP*QFLARLGQAKRPMLSASNQTNFRPP------VRP-------- 886
ED+ + + R QF A+ G +RP L Q P VRP
Sbjct: 471 IRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLITGPQVPSYPQGGSSSVVRPQRQFYNNN 530
Query: 887 -WSTGSASVPPATRPPSVRPQGRWVRFQ*VCPTAPTSSGMSSFRCHGCGEWGHFKKDCPK 1063
+ G+ + RP + Q + VR G C CG+ GH+ CPK
Sbjct: 531 TGNRGNDNRNVVARPAATSTQNQSVR---------KDQGSKPVICFNCGDPGHYADKCPK 581
>gb|ABF95989.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 1305
Score = 95.1 bits (235), Expect = 5e-17
Identities = 84/295 (28%), Positives = 121/295 (41%), Gaps = 19/295 (6%)
Frame = +2
Query: 236 NQNQ-----PGQLLQQYLKLSSEIFSSSPPDPEMAEEWFQNAEHVLQHVTKDRDTWVDLV 400
NQNQ P L +L++ FSS+ +P A +W E L + V
Sbjct: 10 NQNQNPPPPPQNKLADFLRVRPPTFSSTT-NPVEAGDWLHAVEKKLDLIQCTEQEKVSFA 68
Query: 401 TFNFRGPSRDW*KEVSE--AEGETMTWNRFKALFIDKYVHDAARNRKFYEFMSLTKGGMS 574
+ GP+ +W + A GE +TW F A F ++ K EF +L +G S
Sbjct: 69 SHQLHGPAAEWWDHFRQGRAGGEPITWQEFTAAFKKTHIPTGVVALKKREFRALNQGSRS 128
Query: 575 VSAYNDKFSRLSRYGEGLITTDEAITKKFIRGLNPEM*KQLSCLLIKTYEDSLNRSLDYE 754
V+ Y F+RL+RY + TDE +KF+ GLN E LS L+ T + +D
Sbjct: 129 VTEYLHDFNRLARYAPEDVRTDEERQEKFLEGLNDE----LSYTLMSTEFRDFQQLMDKA 184
Query: 755 KEMEDQL--ATRVRERP*QFLARLGQAKRPMLSASNQTNFRPP------VRP----WSTG 898
ED+ + + R QF A+ G +RP L Q P VRP ++
Sbjct: 185 IRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLVTGPQVPSYPQGGSSSVVRPQRQFYNNN 244
Query: 899 SASVPPATRPPSVRPQGRWVRFQ*VCPTAPTSSGMSSFRCHGCGEWGHFKKDCPK 1063
+ + R RP V+ Q V G C CG+ GH+ CPK
Sbjct: 245 TGNRSNDNRNVVARPAATSVQNQPV----RKEQGSKPVICFNCGDPGHYADKCPK 295
>gb|ABA98151.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1281
Score = 94.7 bits (234), Expect = 7e-17
Identities = 84/295 (28%), Positives = 123/295 (41%), Gaps = 19/295 (6%)
Frame = +2
Query: 236 NQNQ-----PGQLLQQYLKLSSEIFSSSPPDPEMAEEWFQNAEHVLQHVTKDRDTWVDLV 400
NQNQ P L +L++ FSS+ +P A +W E L + V
Sbjct: 50 NQNQNPPPPPQNKLADFLRVRPPTFSSTT-NPVEAGDWLHAVEKKLDLIQCTEQEKVYFA 108
Query: 401 TFNFRGPSRDW*KEVSE--AEGETMTWNRFKALFIDKYVHDAARNRKFYEFMSLTKGGMS 574
+ GP+ +W + AEGE +TW F A F ++ K EF +L +G S
Sbjct: 109 SHQLHGPAAEWWDHFRQGRAEGEPITWQEFMAAFKKTHIPTGVVALKKREFRALNQGSRS 168
Query: 575 VSAYNDKFSRLSRYGEGLITTDEAITKKFIRGLNPEM*KQLSCLLIKTYEDSLNRSLDYE 754
V+ Y F+RL+RY + TDE +KF+ GLN E LS L+ T + +D
Sbjct: 169 VTEYLHDFNRLARYAPEDVRTDEERQEKFLEGLNDE----LSYALMSTDFRDFQQLVDKA 224
Query: 755 KEMEDQL--ATRVRERP*QFLARLGQAKRPMLSASNQTNFRPPVRPWSTGSASVPPATR- 925
ED+ + + R QF A+ G +RP L Q P P S+ + P +
Sbjct: 225 IRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLVTGPQA----PSYPQGGSSSVIRPQRQF 280
Query: 926 -PPSVRPQGRWVRFQ*VCPTAPTS--------SGMSSFRCHGCGEWGHFKKDCPK 1063
++ +G R PTA + G C CG+ GH+ CPK
Sbjct: 281 YNNNIGNRGNDNRNMVARPTATLAQNQPVRKEQGSKPGVCFNCGDPGHYADKCPK 335
>dbj|BAH80026.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1666
Score = 94.7 bits (234), Expect = 7e-17
Identities = 84/295 (28%), Positives = 121/295 (41%), Gaps = 19/295 (6%)
Frame = +2
Query: 236 NQNQ-----PGQLLQQYLKLSSEIFSSSPPDPEMAEEWFQNAEHVLQHVTKDRDTWVDLV 400
NQNQ P L +L++ FSS+ +P A +W E L + V
Sbjct: 273 NQNQNPPPPPQNKLADFLRVRPPTFSSTT-NPVEAGDWLHAVEKKLDLIQCTEQEKVSFA 331
Query: 401 TFNFRGPSRDW*KEVSEAE--GETMTWNRFKALFIDKYVHDAARNRKFYEFMSLTKGGMS 574
+ GP+ +W + GE +TW F A F ++ K EF +L +G S
Sbjct: 332 SHQLHGPAAEWWDHFRQGRVGGEPVTWQEFTAAFKKTHIPSGVVALKKREFRALNQGSRS 391
Query: 575 VSAYNDKFSRLSRYGEGLITTDEAITKKFIRGLNPEM*KQLSCLLIKTYEDSLNRSLDYE 754
V+ Y F+RL+RY + TDE +KF+ GLN E LS L+ T + +D
Sbjct: 392 VTEYLHDFNRLARYAPEDVRTDEERQEKFLEGLNDE----LSYALMSTDFRDFQQLVDKA 447
Query: 755 KEMEDQL--ATRVRERP*QFLARLGQAKRPMLSASNQTNFRPP------VRP----WSTG 898
ED+ + + R QF A+ G +RP L Q P VRP ++
Sbjct: 448 IRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLVTGPQVPSYPQGGSSSVVRPQRQFYNNN 507
Query: 899 SASVPPATRPPSVRPQGRWVRFQ*VCPTAPTSSGMSSFRCHGCGEWGHFKKDCPK 1063
+ + R VRP V+ Q V G C CG+ GH+ CPK
Sbjct: 508 TGNRGNDNRNVVVRPAATPVQNQPV----RKEQGSKPVICFNCGDPGHYADKCPK 558
>emb|CAH67149.1| OSIGBa0122F23.6 [Oryza sativa Indica Group]
Length = 1346
Score = 94.7 bits (234), Expect = 7e-17
Identities = 84/300 (28%), Positives = 121/300 (40%), Gaps = 24/300 (8%)
Frame = +2
Query: 236 NQNQ-----PGQLLQQYLKLSSEIFSSSPPDPEMAEEWFQNAEHVLQHVTKDRDTWVDLV 400
NQNQ P L +L++ FSS+ +P A +W E L + V
Sbjct: 48 NQNQNPPPPPQNKLADFLRVRPPTFSSTT-NPVEAGDWLHAVEKKLDLIQCTEQEKVSFA 106
Query: 401 TFNFRGPSRDW*KEVSE--AEGETMTWNRFKALFIDKYVHDAARNRKFYEFMSLTKGGMS 574
+ GP+ +W + A GE +TW F A F ++ K EF +L +G S
Sbjct: 107 SHQLHGPAAEWWDHFRQGRAAGEPITWQEFTAAFKKTHIPSGVVALKKREFRALNQGSRS 166
Query: 575 VSAYNDKFSRLSRYGEGLITTDEAITKKFIRGLNPEM*KQLSCLLIKTYEDSLNRSLDYE 754
V+ Y F+RL+RY + TDE +KF+ GLN E LS L+ T + +D
Sbjct: 167 VTEYLHDFNRLARYAPEDVRTDEERQEKFLEGLNDE----LSYALMSTDFRDFQQFVDKA 222
Query: 755 KEMEDQL--ATRVRERP*QFLARLGQAKRPMLSASNQTNFRPP------VRP-------- 886
ED+ + + R QF A+ G +RP L Q P VRP
Sbjct: 223 IRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLVTGPQAPSYPQGGSSSVVRPQRQFYNNN 282
Query: 887 -WSTGSASVPPATRPPSVRPQGRWVRFQ*VCPTAPTSSGMSSFRCHGCGEWGHFKKDCPK 1063
+ G+ + RP + Q + VR G C CG+ GH+ CPK
Sbjct: 283 TGNRGNDNSNMVARPAATPVQNQPVR---------KEQGSKPVICFNCGDPGHYADKCPK 333
>emb|CAH66120.1| OSIGBa0146N20.5 [Oryza sativa Indica Group]
Length = 1481
Score = 94.7 bits (234), Expect = 7e-17
Identities = 84/300 (28%), Positives = 122/300 (40%), Gaps = 24/300 (8%)
Frame = +2
Query: 236 NQNQ-----PGQLLQQYLKLSSEIFSSSPPDPEMAEEWFQNAEHVLQHVTKDRDTWVDLV 400
NQNQ P L +L++ FSS+ +P A +W E L + V
Sbjct: 50 NQNQNPPPPPQNKLADFLRVRPPTFSSTT-NPVEAGDWLHAVEKKLDLIQCTEQEKVSFA 108
Query: 401 TFNFRGPSRDW*KEVSE--AEGETMTWNRFKALFIDKYVHDAARNRKFYEFMSLTKGGMS 574
+ GP+ +W + A GE +TW F A F ++ K EF +L +G S
Sbjct: 109 SHQLHGPAAEWWDHFRQGRAGGEPITWQEFTAAFRKTHIPTGVVALKKREFRALNQGSRS 168
Query: 575 VSAYNDKFSRLSRYGEGLITTDEAITKKFIRGLNPEM*KQLSCLLIKTYEDSLNRSLDYE 754
V+ Y F+RL+RY + TDE +KF+ GLN E LS L+ T + +D
Sbjct: 169 VTEYLHDFNRLARYAPEDVRTDEERQEKFLEGLNDE----LSYALMSTEFRDFQQLVDKA 224
Query: 755 KEMEDQL--ATRVRERP*QFLARLGQAKRPMLSASNQTNFRPP------VRP-------- 886
ED+ + + R QF ++ G +RP L Q P VRP
Sbjct: 225 IRQEDKYNRMEQKKRRAAQFKSQQGSNQRPRLVTGPQAPSYPQGGSSSVVRPQRQFYNNN 284
Query: 887 -WSTGSASVPPATRPPSVRPQGRWVRFQ*VCPTAPTSSGMSSFRCHGCGEWGHFKKDCPK 1063
+ G+ + TRP + Q + VR G C CG+ GH+ CPK
Sbjct: 285 TGNRGNDNRNVVTRPAATPVQNQPVR---------KDQGSKPVICFNCGDPGHYADKCPK 335