BLASTX nr result

ID: Papaver25_contig00009224 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver25_contig00009224
         (501 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007039013.1| Splicing factor-related [Theobroma cacao] gi...    57   3e-06
ref|XP_002513552.1| splicing factor 3a, putative [Ricinus commun...    56   6e-06

>ref|XP_007039013.1| Splicing factor-related [Theobroma cacao]
           gi|508776258|gb|EOY23514.1| Splicing factor-related
           [Theobroma cacao]
          Length = 509

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
 Frame = -1

Query: 360 FWMVETEFEDISEDGKIQGWESKG---GNISSQDSIIDFDYYITVHELMDMDKDILKEMS 190
           F  VE EFE+   DG++QGWE +G   G+  +Q ++ID DYY TV ELM++  + LKE  
Sbjct: 209 FSKVEAEFEEQWADGQVQGWEKQGQENGDDPAQHTMIDLDYYSTVEELMEVGPEKLKEAL 268

Query: 189 RRISGSHGST 160
             +    G T
Sbjct: 269 AALGLKTGGT 278


>ref|XP_002513552.1| splicing factor 3a, putative [Ricinus communis]
           gi|223547460|gb|EEF48955.1| splicing factor 3a, putative
           [Ricinus communis]
          Length = 459

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
 Frame = -1

Query: 360 FWMVETEFEDISEDGKIQGWES---KGGNISSQDSIIDFDYYITVHELMDMDKDILKEMS 190
           F  V +EFE+  E GK+QGWE    + G + +Q S+ID DYY T+ ELMD+    LKE  
Sbjct: 159 FSKVVSEFEEQWEIGKLQGWERDVHENGEVPAQHSVIDLDYYSTIEELMDVGPQKLKEAL 218

Query: 189 RRISGSHGST 160
             +    G T
Sbjct: 219 AALGLKTGGT 228


Top