BLASTX nr result
ID: Papaver25_contig00006819
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver25_contig00006819
(2008 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 251 e-148
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 257 e-146
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 239 e-146
gb|EXB32317.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 234 e-146
gb|EXB53890.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 240 e-146
ref|XP_007224941.1| hypothetical protein PRUPE_ppa021500mg [Prun... 243 e-145
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 248 e-145
ref|XP_007225416.1| hypothetical protein PRUPE_ppa000562mg [Prun... 240 e-145
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus... 236 e-141
ref|XP_006477872.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 236 e-141
ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 233 e-140
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 244 e-139
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th... 241 e-139
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 249 e-138
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper... 237 e-138
gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum de... 236 e-138
ref|NP_001267682.1| RNA-dependent RNA polymerase 1-like [Cucumis... 242 e-138
gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tu... 236 e-138
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 240 e-138
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 242 e-137
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 251 bits (642), Expect(3) = e-148
Identities = 133/242 (54%), Positives = 158/242 (65%), Gaps = 3/242 (1%)
Frame = +3
Query: 1290 KFKSKVTKLDVLSWSKFQPCFLNRQVISLWFTLGVSDYVFE*KQNKKKQSINWIQF*PTH 1469
K++S T LDVL+WSK+QP FLNRQ+I+L TLGV D+VFE KQ ++ I P
Sbjct: 584 KYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVA 643
Query: 1470 *RRTKHLRSCPQQKPQISSRKCFCVVTSLIKSHSFQ*CFKHFARRSCSELRTRTRIFVPK 1649
+ L S P + + C + + F ELRT+TRIFVP
Sbjct: 644 AQEALELMS-PGENTNVLKEMLMCGYKPDAEPFLSM-MLQTFRAAKLLELRTKTRIFVPN 701
Query: 1650 GRSMMGCLDETATLEYGQVFVQVSRIGRNKLCGDSFSMLNGNGPADTV---GKVVVAKNP 1820
GRSMMGCLDET TLEYG+VFVQ+S G + GDS D GK+VVAKNP
Sbjct: 702 GRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNP 761
Query: 1821 CLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHPNECSGSDLDGDVYFVCWDQELIPR 2000
CLHPGD+RVL AVNVP LHHMVDCVVFPQKG+RPHPNECSGSDLDGD+YFVCWD++LIP
Sbjct: 762 CLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPP 821
Query: 2001 RQ 2006
+Q
Sbjct: 822 QQ 823
Score = 201 bits (510), Expect(3) = e-148
Identities = 126/257 (49%), Positives = 156/257 (60%), Gaps = 23/257 (8%)
Frame = +1
Query: 514 VNHIICALEKLFHLKDCCYEPVNWLSEQYLEYSLSANPPRSTSISLSDGLVYVRRVQVTP 693
++ I ALEKL+HLK+CCYEPV WLSEQY Y + S +ISL GLVYVRRVQ+TP
Sbjct: 307 ISFIEHALEKLYHLKECCYEPVRWLSEQYRTY-VKKPVAGSPAISLDTGLVYVRRVQITP 365
Query: 694 LKVYFLGPEINVSNRVLRYYREHIDNFIRISFVDEDSEKIRSTDLSARATMNDEKKQTLL 873
KVYF GPE+NVSNRVLR Y E IDNF+R+SF+DE+ EKI ST +S R M+ E ++T +
Sbjct: 366 CKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPR--MSKEGRRTGV 423
Query: 874 YERILSTLHNGVVIGDKKFEFLAFS--------AHAELSRS*LAEMARNSNFFCFKRFAN 1029
Y RILS L NG+VIGDKKF+FLAFS A SR L S F + N
Sbjct: 424 YRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRN 483
Query: 1030 SS*YLGLDG*F*KCGEICSKTRTVL---------VPPQKI-----VYTFSHGIGKVSSEF 1167
+ Y + G+ S ++ L +P +I Y FS GIGK+S +
Sbjct: 484 VAKYAA------RLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISPQL 537
Query: 1168 AHKVASKCGLK-CTPSA 1215
AH+VA KCG K TPSA
Sbjct: 538 AHRVAIKCGCKSSTPSA 554
Score = 124 bits (312), Expect(3) = e-148
Identities = 59/98 (60%), Positives = 72/98 (73%)
Frame = +2
Query: 230 QSSAMCLEIPYGCKLPNFRENFHYYTEDEGWFTMQPGSTVSRSLDLVPFVEPPDGHKLRF 409
QS A+CLE+PYG +LPNFRENF YY E++G F ++ GS+ S +L LVP + PP G L F
Sbjct: 213 QSFALCLELPYGSQLPNFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPF 272
Query: 410 DILFKVNSLVQTGCLSGQTLDAKFFRMVDPLCLPPSTI 523
ILFK+N+LVQ GCLSG TLD FFR+VDP P S I
Sbjct: 273 QILFKINTLVQNGCLSGPTLDTSFFRLVDPERFPISFI 310
Score = 145 bits (367), Expect = 5e-32
Identities = 105/236 (44%), Positives = 130/236 (55%), Gaps = 32/236 (13%)
Frame = +2
Query: 1007 FASKGSLTAASIWDWMADF---RNVAKYAARLGQFWF--------------------LHR 1117
FAS+ LTAA I WM DF RNVAKYAARLGQ + +H+
Sbjct: 460 FASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHK 519
Query: 1118 RLYTH-FLMGLEKFLPNLHIKWRVSVV*NVRRLP------WYGGYKGVVTVDPRSVKKLY 1276
T+ F G+ K P L RV++ + YGGYKGVV VDP S +KL
Sbjct: 520 GRTTYVFSDGIGKISPQL--AHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLS 577
Query: 1277 LRPM*V*VKGNQTRCFVMEQVSTVFSQSSSNQPLV--YSWRQ*LCI*IKTKQKEAVDQLD 1450
LR + + T V+ + + S N+ L+ S + KQ+ AVDQLD
Sbjct: 578 LRKSMFKYESDNTNLDVL--AWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLD 635
Query: 1451 SILTDPLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLFRV 1618
+IL DP+ A EALE+MSP E TN+LKEML+CGYKPD EPFLSMMLQTFRAAKL +
Sbjct: 636 TILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLEL 691
>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 257 bits (656), Expect(3) = e-146
Identities = 135/242 (55%), Positives = 160/242 (66%), Gaps = 3/242 (1%)
Frame = +3
Query: 1290 KFKSKVTKLDVLSWSKFQPCFLNRQVISLWFTLGVSDYVFE*KQNKKKQSINWIQF*PTH 1469
K++S+ T LDVLSWSK++PCFLNRQ+I+L TLGV D+VFE KQ + ++ I P
Sbjct: 582 KYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLR 641
Query: 1470 *RRTKHLRSCPQQKPQISSRKCFCVVTSLIKSHSFQ*CFKHFARRSCSELRTRTRIFVPK 1649
+ L S P + I C + + F ELRT+TRIFVP
Sbjct: 642 AQEALELMS-PGENTNILKEMLMCGYKPDAEPFLSM-MLQTFRAAKLLELRTKTRIFVPN 699
Query: 1650 GRSMMGCLDETATLEYGQVFVQVSRIGRNKLCGDSFSMLNGNGPADTV---GKVVVAKNP 1820
GRSMMGCLDET TLEYG+VFVQ+S G + GDS D GKVVVAKNP
Sbjct: 700 GRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNP 759
Query: 1821 CLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHPNECSGSDLDGDVYFVCWDQELIPR 2000
CLHPGD+R+L AV+VPALHHMVDCVVFPQKG RPHP+ECSGSDLDGD+YFVCWD +LIP
Sbjct: 760 CLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPP 819
Query: 2001 RQ 2006
RQ
Sbjct: 820 RQ 821
Score = 201 bits (511), Expect(3) = e-146
Identities = 126/261 (48%), Positives = 156/261 (59%), Gaps = 22/261 (8%)
Frame = +1
Query: 499 PLSPSVNHIICALEKLFHLKDCCYEPVNWLSEQYLEYSLSANPPRSTSISLSDGLVYVRR 678
P +++ I ALEKL++L++CCYEPV WL EQY Y +S S +ISL GLVYVRR
Sbjct: 300 PQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTY-ISKQVAGSPAISLDTGLVYVRR 358
Query: 679 VQVTPLKVYFLGPEINVSNRVLRYYREHIDNFIRISFVDEDSEKIRSTDLSARATMNDEK 858
VQ+TP KVYF GPE+NVSNRVLR Y E IDNF+R+SF+DE+SEKI ST +S R M++E
Sbjct: 359 VQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVISPR--MSNEG 416
Query: 859 KQTLLYERILSTLHNGVVIGDKKFEFLAFS--------AHAELSRS*LAEMARNSNFFCF 1014
++T +Y RILS L NG+VIGDKKF+FLA S A SR L S F
Sbjct: 417 RRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTAADIRSRMGDF 476
Query: 1015 KRFANSS*YLGLDG*F*KCGEICSKTRTVLVPPQKI-------------VYTFSHGIGKV 1155
+ N + Y G S T+ V +I Y FS GIGK+
Sbjct: 477 SQIRNVAKYAARLG-----QSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFSDGIGKI 531
Query: 1156 SSEFAHKVASKCGLK-CTPSA 1215
S+E AH+VA KCG K TPSA
Sbjct: 532 SAELAHRVAIKCGCKNSTPSA 552
Score = 111 bits (278), Expect(3) = e-146
Identities = 53/90 (58%), Positives = 66/90 (73%)
Frame = +2
Query: 230 QSSAMCLEIPYGCKLPNFRENFHYYTEDEGWFTMQPGSTVSRSLDLVPFVEPPDGHKLRF 409
QSSA+CLE+P+G +LPNF ENF Y E++ F ++ G++ S +L LVP V PP G L F
Sbjct: 211 QSSALCLELPHGSQLPNFCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPF 270
Query: 410 DILFKVNSLVQTGCLSGQTLDAKFFRMVDP 499
ILFK+N+LVQ GCLSG TLD FFR VDP
Sbjct: 271 KILFKINTLVQNGCLSGPTLDTNFFRWVDP 300
Score = 146 bits (368), Expect = 4e-32
Identities = 105/245 (42%), Positives = 128/245 (52%), Gaps = 41/245 (16%)
Frame = +2
Query: 1007 FASKGSLTAASIWDWMADF---RNVAKYAARLGQFWFLHRR--------------LYTH- 1132
FAS+ LTAA I M DF RNVAKYAARLGQ + + + TH
Sbjct: 458 FASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHR 517
Query: 1133 ------FLMGLEKFLPNLHIKWRVSVV*NVRRLP------WYGGYKGVVTVDPRSVKKLY 1276
F G+ K + + RV++ + YGGYKGVV VDP S +KL
Sbjct: 518 DGTTYVFSDGIGKI--SAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLS 575
Query: 1277 LRPM*V*VKGNQTR-----------CFVMEQVSTVFSQSSSNQPLVYSWRQ*LCI*IKTK 1423
LR + T CF+ Q+ T+ S + + K
Sbjct: 576 LRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHV-----------FEKK 624
Query: 1424 QKEAVDQLDSILTDPLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAA 1603
Q+EAVDQLD+IL DPL+A EALE+MSP E TNILKEML+CGYKPD EPFLSMMLQTFRAA
Sbjct: 625 QREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAA 684
Query: 1604 KLFRV 1618
KL +
Sbjct: 685 KLLEL 689
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 239 bits (611), Expect(3) = e-146
Identities = 131/242 (54%), Positives = 159/242 (65%), Gaps = 3/242 (1%)
Frame = +3
Query: 1290 KFKSKVTKLDVLSWSKFQPCFLNRQVISLWFTLGVSDYVFE*KQNKKKQSINWIQF*PTH 1469
K++S+ TKLDVL+ SK+QPCFLNRQ+I+L TLGV D+ FE KQ + ++ + P
Sbjct: 595 KYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLR 654
Query: 1470 *RRTKHLRSCPQQKPQISSRKCFCVVTSLIKSHSFQ*CFKHFARRSCSELRTRTRIFVPK 1649
+ L S P + I C + + F ELRT+TRIF+P
Sbjct: 655 AQEALELMS-PGENTNILKEMLLCGYQPDAEPFLSM-MLQTFRASKLLELRTKTRIFIPN 712
Query: 1650 GRSMMGCLDETATLEYGQVFVQVSRIGRNKLCGDSFSMLNGNGPADTV---GKVVVAKNP 1820
GRSMMGCLDET TLE+GQVFV+ S R + DS M + G G VVVAKNP
Sbjct: 713 GRSMMGCLDETRTLEHGQVFVKFSG-SRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNP 771
Query: 1821 CLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHPNECSGSDLDGDVYFVCWDQELIPR 2000
CLHPGD+R+L+AV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD ELIP
Sbjct: 772 CLHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPS 831
Query: 2001 RQ 2006
+Q
Sbjct: 832 QQ 833
Score = 221 bits (564), Expect(3) = e-146
Identities = 128/250 (51%), Positives = 155/250 (62%), Gaps = 22/250 (8%)
Frame = +1
Query: 532 ALEKLFHLKDCCYEPVNWLSEQYLEYSLSANPPRSTSISLSDGLVYVRRVQVTPLKVYFL 711
ALEKL+HLK+CCYEP W +EQY +Y S NPPRS +SL GLVYV +VQ+TP KV+F
Sbjct: 321 ALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLSLDAGLVYVYKVQITPCKVFFC 380
Query: 712 GPEINVSNRVLRYYREHIDNFIRISFVDEDSEKIRSTDLSARATMNDEKKQTLLYERILS 891
GPE+NVSNRVLR YRE IDNF+R+SFVDE+ EKI STD+S R + +E ++T +Y RILS
Sbjct: 381 GPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDVSPRTSSRNELRRTAIYNRILS 440
Query: 892 TLHNGVVIGDKKFEFLAFSAH--------AELSRS*LAEMARNSNFFCFKRFANSS*YLG 1047
TL NG+VIGDKKFEFLAFS+ SR L + F + N + Y
Sbjct: 441 TLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAADIRAWMGSFHKIRNVARYAA 500
Query: 1048 LDG*F*KCGEICSKTRTVLVPPQKIV-------------YTFSHGIGKVSSEFAHKVASK 1188
G S T T+ V +I Y FS GIGK+S+EFA KVA K
Sbjct: 501 RLG-----QSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFSDGIGKISAEFARKVAIK 555
Query: 1189 CGLK-CTPSA 1215
CG K TPSA
Sbjct: 556 CGCKGFTPSA 565
Score = 108 bits (269), Expect(3) = e-146
Identities = 53/99 (53%), Positives = 68/99 (68%)
Frame = +2
Query: 233 SSAMCLEIPYGCKLPNFRENFHYYTEDEGWFTMQPGSTVSRSLDLVPFVEPPDGHKLRFD 412
SS++CLE+P +LPNF ENF YY E+EG F ++ G T SR+ DLVP V P G L ++
Sbjct: 222 SSSLCLELPNHLQLPNFNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYN 281
Query: 413 ILFKVNSLVQTGCLSGQTLDAKFFRMVDPLCLPPSTI*Y 529
ILF+VN LVQ GCL+G LD F+R+VDP +P I Y
Sbjct: 282 ILFRVNLLVQNGCLAGSMLDDIFYRLVDPNRMPVRCIEY 320
Score = 138 bits (348), Expect = 8e-30
Identities = 99/244 (40%), Positives = 126/244 (51%), Gaps = 40/244 (16%)
Frame = +2
Query: 1007 FASKGSLTAASIWDWMADF---RNVAKYAARLGQFWFLHRRLYTHFLMGLEKFLPNLHIK 1177
FAS+ LTAA I WM F RNVA+YAARLGQ + + +E +P++ +
Sbjct: 471 FASRLGLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIE-IIPDIEVS 529
Query: 1178 W--------------------RVSVV*NVRRLP------WYGGYKGVVTVDPRSVKKLYL 1279
+V++ + Y GYKGVV VDP S KKL L
Sbjct: 530 RGGTRYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSL 589
Query: 1280 RPM*V*VKGNQTR-----------CFVMEQVSTVFSQSSSNQPLVYSWRQ*LCI*IKTKQ 1426
R + T+ CF+ Q+ T+ S + KQ
Sbjct: 590 RRSMFKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHH-----------FERKQ 638
Query: 1427 KEAVDQLDSILTDPLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAK 1606
+EAVDQLD++LTDPL+A EALE+MSP E TNILKEMLLCGY+PD EPFLSMMLQTFRA+K
Sbjct: 639 REAVDQLDAMLTDPLRAQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASK 698
Query: 1607 LFRV 1618
L +
Sbjct: 699 LLEL 702
>gb|EXB32317.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 862
Score = 234 bits (597), Expect(4) = e-146
Identities = 133/243 (54%), Positives = 157/243 (64%), Gaps = 6/243 (2%)
Frame = +3
Query: 1287 CKFKSKVTKLDVLSWSKFQPCFLNRQVISLWFTLGVSDYVFE*KQNKKKQSINWIQF*PT 1466
CK+KSK KLDVL+WSK+QPCFLNR++I+L TLGV D VFE KQ K++IN + T
Sbjct: 576 CKYKSKNNKLDVLAWSKYQPCFLNRELITLLSTLGVRDCVFEKKQ---KETINRLDSILT 632
Query: 1467 H*RRTKHLRSC--PQQKPQISSRKCFCVVTSLIKSHSFQ*CFKHFARRSCSELRTRTRIF 1640
R + P++ I C + + ELRT+TRI
Sbjct: 633 DSLRAQDELKMMFPREISNILKEMLMCGYEP-DEEPFLAMMLQTLHASKLLELRTKTRIH 691
Query: 1641 VPKGRSMMGCLDETATLEYGQVFVQVSRIGRNKLCGDSFSMLNGNGPAD----TVGKVVV 1808
VP GR MMGCLDET TLEYGQVFVQ SR +L DS + N + GKVVV
Sbjct: 692 VPNGRLMMGCLDETGTLEYGQVFVQCSR---PQLFDDSSLVFNNYSSSSDKFVVKGKVVV 748
Query: 1809 AKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHPNECSGSDLDGDVYFVCWDQE 1988
AKNPCLHPGD+RVL+AV+VP LHHMVDCVVFPQKG RPH +ECSGSDLDGD YFVCWD++
Sbjct: 749 AKNPCLHPGDVRVLRAVDVPELHHMVDCVVFPQKGMRPHTDECSGSDLDGDTYFVCWDRK 808
Query: 1989 LIP 1997
LIP
Sbjct: 809 LIP 811
Score = 211 bits (536), Expect(4) = e-146
Identities = 123/248 (49%), Positives = 161/248 (64%), Gaps = 20/248 (8%)
Frame = +1
Query: 532 ALEKLFHLKDCCYEPVNWLSEQYLEYSLSANPPRSTSISLSDGLVYVRRVQVTPLKVYFL 711
AL+KL+HLKDCCY+P+ WL +QY++Y+ S P+ +I+L DGLVYV RVQVTP KVYF
Sbjct: 302 ALDKLYHLKDCCYDPLRWLKKQYIKYNTSGQIPKMPTIALEDGLVYVHRVQVTPTKVYFC 361
Query: 712 GPEINVSNRVLRYYREHIDNFIRISFVDEDSEKIRSTDLSARATMNDEKKQTLLYERILS 891
GPEIN+SNRVLR Y + IDNF+R+SFVDE+ +K+ STDL AR + + K++T LY+RIL
Sbjct: 362 GPEINLSNRVLRNYPKDIDNFLRVSFVDENLDKLSSTDLCARGSSANGKRRTRLYDRILF 421
Query: 892 TLHNGVVIGDKKFEFLAFSAHAELSRS*L----------AEMARN--SNFFCFKRFANSS 1035
TL NG++IGDKKFEFLAFS+ ++L L A RN +F K A +
Sbjct: 422 TLRNGILIGDKKFEFLAFSS-SQLKEGSLWMFASRDGLTAADIRNWMGDFHDIKNVARYA 480
Query: 1036 *YLGLDG*F*KCGEI--CSKTRTVLVPPQKIV-----YTFSHGIGKVSSEFAHKVASKCG 1194
LG F E + L+P ++ Y FS GIGK+S +FA +VA KCG
Sbjct: 481 ARLGQS--FGSSHETFRVGRDEVELIPDIEVKRDGKNYCFSDGIGKISEDFAKEVAKKCG 538
Query: 1195 L-KCTPSA 1215
L + TPSA
Sbjct: 539 LNRYTPSA 546
Score = 109 bits (273), Expect(4) = e-146
Identities = 56/94 (59%), Positives = 65/94 (69%)
Frame = +2
Query: 230 QSSAMCLEIPYGCKLPNFRENFHYYTEDEGWFTMQPGSTVSRSLDLVPFVEPPDGHKLRF 409
QSSA+CLEIP +LPN R+ F YY EDEG F++Q G S S DLVP V PP G L +
Sbjct: 202 QSSALCLEIPNWRQLPNLRDVFVYYKEDEGQFSLQQGCPFSSSSDLVPMVVPPKGIILPY 261
Query: 410 DILFKVNSLVQTGCLSGQTLDAKFFRMVDPLCLP 511
ILFKVNSLVQ GCL + LD FFR+VDP +P
Sbjct: 262 KILFKVNSLVQHGCLPAEVLDLNFFRLVDPSRIP 295
Score = 35.8 bits (81), Expect(4) = e-146
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +3
Query: 48 VNYKLELSYESIWEIQLRRPKNLNSQF 128
V+YKLE+SYE+IW+I+L R S+F
Sbjct: 143 VDYKLEISYENIWQIKLHRMHGETSKF 169
Score = 125 bits (313), Expect = 9e-26
Identities = 93/248 (37%), Positives = 127/248 (51%), Gaps = 44/248 (17%)
Frame = +2
Query: 1007 FASKGSLTAASIWDWMADF---RNVAKYAARLGQ-FWFLHRRLYTHFLMGLEK--FLPNL 1168
FAS+ LTAA I +WM DF +NVA+YAARLGQ F H F +G ++ +P++
Sbjct: 452 FASRDGLTAADIRNWMGDFHDIKNVARYAARLGQSFGSSHET----FRVGRDEVELIPDI 507
Query: 1169 HIKW--------------------RVSVV*NVRRLP------WYGGYKGVVTVDPRSVKK 1270
+K V+ + R YGGYKGVV VDP S K
Sbjct: 508 EVKRDGKNYCFSDGIGKISEDFAKEVAKKCGLNRYTPSAFQIRYGGYKGVVAVDPTSSMK 567
Query: 1271 LYLRP------------M*V*VKGNQTRCFVMEQVSTVFSQSSSNQPLVYSWRQ*LCI*I 1414
L LR + V CF+ ++ T+ S C+
Sbjct: 568 LSLRKKSMCKYKSKNNKLDVLAWSKYQPCFLNRELITLLSTLGVRD----------CV-F 616
Query: 1415 KTKQKEAVDQLDSILTDPLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTF 1594
+ KQKE +++LDSILTD L+A + L++M P E +NILKEML+CGY+PD+EPFL+MMLQT
Sbjct: 617 EKKQKETINRLDSILTDSLRAQDELKMMFPREISNILKEMLMCGYEPDEEPFLAMMLQTL 676
Query: 1595 RAAKLFRV 1618
A+KL +
Sbjct: 677 HASKLLEL 684
>gb|EXB53890.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 885
Score = 240 bits (613), Expect(3) = e-146
Identities = 138/250 (55%), Positives = 168/250 (67%), Gaps = 10/250 (4%)
Frame = +3
Query: 1287 CKFKSKVTKLDVLSWSKFQPCFLNRQVISLWFTLGVSDYVFE*KQNKKKQSINWIQF*PT 1466
CK++SK KLDVL+WSK+QPCFLNRQ+I+L TLGVSD+VFE KQ K+++N ++
Sbjct: 399 CKYESKNNKLDVLAWSKYQPCFLNRQLITLLSTLGVSDHVFEKKQ---KETVNRLES--- 452
Query: 1467 H*RRTKHLRSCPQQKPQISSRKCFCVVTSLIKSHS-----FQ*CFKHFARRS-CSELRTR 1628
T LR+ + K + L+ + F R S ELRT+
Sbjct: 453 --ILTDSLRAQDELKMMFPGEITNTLKEMLMCGYEPNEEPFLAMMLQTLRASKLLELRTK 510
Query: 1629 TRIFVPKGRSMMGCLDETATLEYGQVFVQVSRIGRNKLCGDSFSMLN-GNGPADTV---G 1796
TRI VP GR+MMGCLDET TLEYGQVFVQ SR +L +S + N + DT G
Sbjct: 511 TRIHVPNGRAMMGCLDETGTLEYGQVFVQCSR---PQLFDNSSLVFNISSSSPDTFVVKG 567
Query: 1797 KVVVAKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHPNECSGSDLDGDVYFVC 1976
K VVAKNPCLHPGD+RVL+A++VP LHHMVDCVVFPQKG+ PH +ECSGSDLDGD YFVC
Sbjct: 568 KTVVAKNPCLHPGDVRVLKAMDVPELHHMVDCVVFPQKGKMPHTDECSGSDLDGDTYFVC 627
Query: 1977 WDQELIPRRQ 2006
WDQELIPRR+
Sbjct: 628 WDQELIPRRR 637
Score = 219 bits (557), Expect(3) = e-146
Identities = 126/258 (48%), Positives = 162/258 (62%), Gaps = 19/258 (7%)
Frame = +1
Query: 499 PLSPSVNHIICALEKLFHLKDCCYEPVNWLSEQYLEYSLSANPPRSTSISLSDGLVYVRR 678
P + +I ALEKL HLKDCCY P+ WL +QY++Y+ S P+ +I+L DGLVYV R
Sbjct: 115 PSRIQLEYIESALEKLHHLKDCCYNPLRWLKKQYIKYNRSGQIPKLRTITLDDGLVYVHR 174
Query: 679 VQVTPLKVYFLGPEINVSNRVLRYYREHIDNFIRISFVDEDSEKIRSTDLSARATMNDEK 858
VQVTP KVYF GPEIN+SNRVLR Y E I+NF+R+SFVDED +K+ STDLSA + + K
Sbjct: 175 VQVTPTKVYFCGPEINLSNRVLRNYHEDINNFLRVSFVDEDLDKLSSTDLSAHGSSENGK 234
Query: 859 KQTLLYERILSTLHNGVVIGDKKFEFLAFSAHAELSRS*LAEMARNS-----------NF 1005
++T LY+RILSTL NG++IGDKKFEFLAFS+ S +R+ +F
Sbjct: 235 RRTRLYDRILSTLRNGILIGDKKFEFLAFSSSQLREGSAWMFASRDGLTAADIRKWMGDF 294
Query: 1006 FCFKRFANSS*YLGLDG*F*KCGEI--CSKTRTVLVPPQKIV-----YTFSHGIGKVSSE 1164
C K A + LG F E + L+P ++ Y FS GIGK+S +
Sbjct: 295 RCIKNVAKYAARLGQS--FGSSHETFRVGRHEVELIPDIQVERDGKNYCFSDGIGKISED 352
Query: 1165 FAHKVASKCGL-KCTPSA 1215
FA +VA KCGL + TPSA
Sbjct: 353 FAREVAKKCGLNRFTPSA 370
Score = 109 bits (272), Expect(3) = e-146
Identities = 56/90 (62%), Positives = 64/90 (71%)
Frame = +2
Query: 230 QSSAMCLEIPYGCKLPNFRENFHYYTEDEGWFTMQPGSTVSRSLDLVPFVEPPDGHKLRF 409
QSSA+CLEIP +LPN R+ F YY EDEG F++Q GS S S DLVP V P G L +
Sbjct: 26 QSSALCLEIPNWRQLPNLRDCFVYYKEDEGQFSLQQGSPFSSSSDLVPTVVPSQGINLPY 85
Query: 410 DILFKVNSLVQTGCLSGQTLDAKFFRMVDP 499
ILFKVNSLVQ GCL + LD KFFR+VDP
Sbjct: 86 KILFKVNSLVQHGCLPAKALDLKFFRLVDP 115
Score = 125 bits (313), Expect = 9e-26
Identities = 93/247 (37%), Positives = 125/247 (50%), Gaps = 43/247 (17%)
Frame = +2
Query: 1007 FASKGSLTAASIWDWMADFR---NVAKYAARLGQ-FWFLHRRLYTHFLMGLEK--FLPNL 1168
FAS+ LTAA I WM DFR NVAKYAARLGQ F H F +G + +P++
Sbjct: 276 FASRDGLTAADIRKWMGDFRCIKNVAKYAARLGQSFGSSHET----FRVGRHEVELIPDI 331
Query: 1169 HIKW--------------------RVSVV*NVRRLP------WYGGYKGVVTVDPRSVKK 1270
++ V+ + R YGGYKGVV VDP S K
Sbjct: 332 QVERDGKNYCFSDGIGKISEDFAREVAKKCGLNRFTPSAFQIRYGGYKGVVAVDPTSSMK 391
Query: 1271 LYLRPM*V*VKGNQTR-----------CFVMEQVSTVFSQSSSNQPLVYSWRQ*LCI*IK 1417
L LR + + CF+ Q+ T+ S + + +
Sbjct: 392 LSLRKSMCKYESKNNKLDVLAWSKYQPCFLNRQLITLLSTLGVSDHV-----------FE 440
Query: 1418 TKQKEAVDQLDSILTDPLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFR 1597
KQKE V++L+SILTD L+A + L++M P E TN LKEML+CGY+P++EPFL+MMLQT R
Sbjct: 441 KKQKETVNRLESILTDSLRAQDELKMMFPGEITNTLKEMLMCGYEPNEEPFLAMMLQTLR 500
Query: 1598 AAKLFRV 1618
A+KL +
Sbjct: 501 ASKLLEL 507
>ref|XP_007224941.1| hypothetical protein PRUPE_ppa021500mg [Prunus persica]
gi|462421877|gb|EMJ26140.1| hypothetical protein
PRUPE_ppa021500mg [Prunus persica]
Length = 1104
Score = 243 bits (619), Expect(4) = e-145
Identities = 133/241 (55%), Positives = 159/241 (65%), Gaps = 1/241 (0%)
Frame = +3
Query: 1287 CKFKSKVTKLDVLSWSKFQPCFLNRQVISLWFTLGVSDYVFE*KQNKKKQSINWIQF*PT 1466
CK++S TKLDVL+WS++QPCFLNRQ+I+L TLGV D VF KQN+ + + + P+
Sbjct: 578 CKYQSNNTKLDVLAWSRYQPCFLNRQLITLLSTLGVPDLVFVKKQNEALKQLEGVLADPS 637
Query: 1467 H*RRTKHLRSCPQQKPQISSRKCFCVVTSLIKSHSFQ*CFKHFARRSCSELRTRTRIFVP 1646
R + L Q + ++ + F ELRT+TRIFVP
Sbjct: 638 --RALEALEMIFQGEVTNVLKEMLACGYEPDAEPFLSLMLQAFCASKLVELRTKTRIFVP 695
Query: 1647 KGRSMMGCLDETATLEYGQVFVQVSRIGRNKLCGDSFSMLNGNGPADTV-GKVVVAKNPC 1823
GRS+MGCLDET TLEYGQVFVQ S+ R G+S S + V G VVVAKNPC
Sbjct: 696 NGRSLMGCLDETGTLEYGQVFVQCSQ--RAVFGGNSNSSATSSEDNFIVEGNVVVAKNPC 753
Query: 1824 LHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHPNECSGSDLDGDVYFVCWDQELIPRR 2003
LHPGD+RVL+AVNVPALHHMVDC+VFPQKG RPHPNECSGSDLDGD YFV WD +LIP R
Sbjct: 754 LHPGDVRVLRAVNVPALHHMVDCIVFPQKGNRPHPNECSGSDLDGDFYFVSWDPDLIPPR 813
Query: 2004 Q 2006
Q
Sbjct: 814 Q 814
Score = 214 bits (544), Expect(4) = e-145
Identities = 130/253 (51%), Positives = 161/253 (63%), Gaps = 19/253 (7%)
Frame = +1
Query: 514 VNHIICALEKLFHLKDCCYEPVNWLSEQYLEYSLSANPPRSTSISLSDGLVYVRRVQVTP 693
+ +I CAL+KLF LK CCYEPV+WL+EQY EY P+S +ISL DG+VYV RVQVTP
Sbjct: 297 IQYIECALDKLFRLKGCCYEPVSWLTEQYREYMACERIPQSPAISLDDGMVYVHRVQVTP 356
Query: 694 LKVYFLGPEINVSNRVLRYYREHIDNFIRISFVDEDSEKIRSTDLSAR---ATMNDEKKQ 864
KVYF GPE NVSNRVLR Y E +DNF+R+SFVDED K+RS DL R T + +++
Sbjct: 357 SKVYFCGPEANVSNRVLRNYPEDVDNFLRVSFVDEDMGKMRSGDLCPRTNSTTSTEGERK 416
Query: 865 TLLYERILSTLHNGVVIGDKKFEFLAFSA-----HAE---LSRS*L-AEMARN--SNFFC 1011
T +YERILSTL NG+VIG+KKFEFLA S+ H+ SRS L A+ RN +F
Sbjct: 417 TGVYERILSTLRNGIVIGEKKFEFLAHSSSQLREHSVWMFASRSELTAQDIRNWMGDFSD 476
Query: 1012 FKRFANSS*YLGLDG*F*KCGEICSKTRTVLVPPQK-----IVYTFSHGIGKVSSEFAHK 1176
K A + LG + + +P K + Y FS GIGK+S+EFA +
Sbjct: 477 IKNVAKHAARLGQAFSSSRETFDVGEDEIEFIPDVKTERGGVKYCFSDGIGKISAEFAGR 536
Query: 1177 VASKCGLKCTPSA 1215
VASKCG TPSA
Sbjct: 537 VASKCGKSTTPSA 549
Score = 102 bits (254), Expect(4) = e-145
Identities = 48/90 (53%), Positives = 64/90 (71%)
Frame = +2
Query: 230 QSSAMCLEIPYGCKLPNFRENFHYYTEDEGWFTMQPGSTVSRSLDLVPFVEPPDGHKLRF 409
QSS +CLE+P C+LPN R+ + +Y E+EG ++ G+T S + DLVP V PP G L +
Sbjct: 203 QSSVVCLELPPTCELPNLRKIYAHYKENEGRLVLERGNTFSCTSDLVPIVGPPLGINLPY 262
Query: 410 DILFKVNSLVQTGCLSGQTLDAKFFRMVDP 499
ILFK+NSLVQ GC+ GQ LD KF+ +VDP
Sbjct: 263 KILFKINSLVQHGCVPGQALDVKFYELVDP 292
Score = 29.3 bits (64), Expect(4) = e-145
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 33 LKIKPVNYKLELSYESIWEIQLRRPK 110
L + V YKLE+S ESI +I+L P+
Sbjct: 138 LSLDAVEYKLEISSESIRQIELHHPR 163
Score = 118 bits (296), Expect = 9e-24
Identities = 92/240 (38%), Positives = 122/240 (50%), Gaps = 39/240 (16%)
Frame = +2
Query: 1007 FASKGSLTAASIWDWMADF---RNVAKYAARLGQFWFLHRRLYTHFLMGLEKFLPNLH-- 1171
FAS+ LTA I +WM DF +NVAK+AARLGQ + R + +E F+P++
Sbjct: 456 FASRSELTAQDIRNWMGDFSDIKNVAKHAARLGQAFSSSRETFDVGEDEIE-FIPDVKTE 514
Query: 1172 ---IKW---------------RVSVV*NVRRLPW-----YGGYKGVVTVDPRSVKKLYLR 1282
+K+ RV+ P GGYKGVV VDP KKL LR
Sbjct: 515 RGGVKYCFSDGIGKISAEFAGRVASKCGKSTTPSAFQIRLGGYKGVVAVDPTLSKKLALR 574
Query: 1283 PM*V*VKGNQTR-----------CFVMEQVSTVFSQSSSNQPLVYSWRQ*LCI*IKTKQK 1429
+ N T+ CF+ Q+ T+ S + LV+ KQ
Sbjct: 575 NSMCKYQSNNTKLDVLAWSRYQPCFLNRQLITLLS-TLGVPDLVFV----------KKQN 623
Query: 1430 EAVDQLDSILTDPLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKL 1609
EA+ QL+ +L DP +A EALE++ E TN+LKEML CGY+PD EPFLS+MLQ F A+KL
Sbjct: 624 EALKQLEGVLADPSRALEALEMIFQGEVTNVLKEMLACGYEPDAEPFLSLMLQAFCASKL 683
>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 1133
Score = 248 bits (634), Expect(3) = e-145
Identities = 136/242 (56%), Positives = 160/242 (66%), Gaps = 3/242 (1%)
Frame = +3
Query: 1290 KFKSKVTKLDVLSWSKFQPCFLNRQVISLWFTLGVSDYVFE*KQNKKKQSINWIQF*PTH 1469
K++S++ KLDVL++SK Q C+LNRQ+I+L TLGV D VFE KQ + Q +N I P
Sbjct: 596 KYESELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLR 655
Query: 1470 *RRTKHLRSCPQQKPQISSRKCFCVVTSLIKSHSFQ*CFKHFARRSCSELRTRTRIFVPK 1649
R L S + I C + + F ELRT+TRI +P
Sbjct: 656 AREALDLMSAGETT-NILKELLSCGYQPNAEPFLSM-MLQAFRASKLQELRTKTRISIPD 713
Query: 1650 GRSMMGCLDETATLEYGQVFVQVSRIGRNKLCGDSFSMLNGNGPADT---VGKVVVAKNP 1820
GR+MMGCLDE TLEYG+VFVQ S I DSF ML G G VG+VVVAKNP
Sbjct: 714 GRAMMGCLDEMRTLEYGEVFVQFSGITHRPFFEDSF-MLGGTGSGQNYIVVGRVVVAKNP 772
Query: 1821 CLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHPNECSGSDLDGDVYFVCWDQELIPR 2000
CLHPGD+RVL+AVNVPALHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD ELIP+
Sbjct: 773 CLHPGDVRVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQ 832
Query: 2001 RQ 2006
+Q
Sbjct: 833 KQ 834
Score = 207 bits (526), Expect(3) = e-145
Identities = 131/288 (45%), Positives = 169/288 (58%), Gaps = 23/288 (7%)
Frame = +1
Query: 511 SVNHIICALEKLFHLKDCCYEPVNWLSEQYLEYSLSANPPRSTSISLSDGLVYVRRVQVT 690
+V+ I ALEKLF+LK+C YEP WL+EQY +Y + PP+ +I+L GLVYVRRVQVT
Sbjct: 315 NVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPAIALDSGLVYVRRVQVT 374
Query: 691 PLKVYFLGPEINVSNRVLRYYREHIDNFIRISFVDEDSEKIRSTDLSARATMNDEKKQTL 870
P KVYF GPEINVSNRVLR Y ++ID F+R+SFVDE+ EK+ STDLS R + +E ++T
Sbjct: 375 PSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLFSTDLSPRTSNANEDRRTG 434
Query: 871 LYERILSTLHNGVVIGDKKFEFLAFSAHAELSRS*LAEMARNSNFFC---------FKRF 1023
+Y RILS L NG+ IGD+KFEFLAFS+ ++L + L A F+
Sbjct: 435 IYRRILSVLRNGIEIGDRKFEFLAFSS-SQLRDNSLWMFAAVDGHSADTIRQWIGDFRSI 493
Query: 1024 ANSS*YLGLDG*F*KCGEICSKTRTVLVPPQK-------------IVYTFSHGIGKVSSE 1164
N + Y G S T T+ V + + Y FS GIGK+SS
Sbjct: 494 RNVAKYAARLG-----QSFGSSTETLTVDESETEVISDIEIERGAVKYVFSDGIGKISST 548
Query: 1165 FAHKVASKCGLK-CTPSALVWWIQRCRHCRSKICEKVISETNVSLSQR 1305
FA +VA KCGLK C PSA + R+C K V ++ LS R
Sbjct: 549 FAKRVAKKCGLKDCVPSAF-----QIRYCGYKGVVAVDPTSSTKLSLR 591
Score = 110 bits (276), Expect(3) = e-145
Identities = 52/89 (58%), Positives = 65/89 (73%)
Frame = +2
Query: 233 SSAMCLEIPYGCKLPNFRENFHYYTEDEGWFTMQPGSTVSRSLDLVPFVEPPDGHKLRFD 412
SSA+ LE+PYG LP+ RENF YY E E F ++ GS+ SR+LDLVP V PP G L F+
Sbjct: 222 SSALYLELPYGVDLPDLRENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFE 281
Query: 413 ILFKVNSLVQTGCLSGQTLDAKFFRMVDP 499
+FK+N L+Q GCLSG TLD F+R+VDP
Sbjct: 282 TVFKINMLLQNGCLSGPTLDVDFYRLVDP 310
>ref|XP_007225416.1| hypothetical protein PRUPE_ppa000562mg [Prunus persica]
gi|462422352|gb|EMJ26615.1| hypothetical protein
PRUPE_ppa000562mg [Prunus persica]
Length = 1095
Score = 240 bits (612), Expect(3) = e-145
Identities = 135/256 (52%), Positives = 158/256 (61%), Gaps = 19/256 (7%)
Frame = +3
Query: 1287 CKFKSKVTKLDVLSWSKFQPCFLNRQVISLWFTLGVSDYVFE*KQNKKKQSINWIQF*PT 1466
CK++S TKLDVL+WS++QPCFLNRQ+I+L TLGV D VFE KQN+ + + + P+
Sbjct: 569 CKYQSNNTKLDVLAWSRYQPCFLNRQLITLLSTLGVPDLVFEKKQNEALKQLEGVLADPS 628
Query: 1467 H*RRT-------------KHLRSC---PQQKPQISSRKCFCVVTSLIKSHSFQ*CFKHFA 1598
K + +C P +P +S + F
Sbjct: 629 SALEALEMIFQGEVTDVLKEMLACGYEPDAEPFLSLM------------------LQAFC 670
Query: 1599 RRSCSELRTRTRIFVPKGRSMMGCLDETATLEYGQVFVQVSR---IGRNKLCGDSFSMLN 1769
ELRT+TRIFVP GRS+MGCLDET TLEYGQVFVQ S+ G N C + S N
Sbjct: 671 ASKLVELRTKTRIFVPNGRSLMGCLDETGTLEYGQVFVQCSQRAVFGGNSNCSATSSEDN 730
Query: 1770 GNGPADTVGKVVVAKNPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHPNECSGSD 1949
G VVVAKNPCLHPGD+RVL AVNVPALHHMVDCVVFPQKG RPHPNECSGSD
Sbjct: 731 ----FIVEGNVVVAKNPCLHPGDVRVLWAVNVPALHHMVDCVVFPQKGNRPHPNECSGSD 786
Query: 1950 LDGDVYFVCWDQELIP 1997
LDGD YFV WD +LIP
Sbjct: 787 LDGDFYFVSWDPDLIP 802
Score = 215 bits (548), Expect(3) = e-145
Identities = 131/253 (51%), Positives = 162/253 (64%), Gaps = 19/253 (7%)
Frame = +1
Query: 514 VNHIICALEKLFHLKDCCYEPVNWLSEQYLEYSLSANPPRSTSISLSDGLVYVRRVQVTP 693
+ +I CAL+KLF LK CCYEPV+WL+EQY EY P+S +ISL DG+VYV RVQVTP
Sbjct: 288 IEYIECALDKLFRLKGCCYEPVSWLTEQYKEYMACKRIPQSPAISLDDGMVYVHRVQVTP 347
Query: 694 LKVYFLGPEINVSNRVLRYYREHIDNFIRISFVDEDSEKIRSTDLSAR---ATMNDEKKQ 864
KVYF GPE NVSNRVLR Y E +DNF+R+SFVDED K+RS DL R T +E+++
Sbjct: 348 SKVYFCGPEANVSNRVLRNYPEDVDNFLRVSFVDEDMGKMRSGDLCPRTNSTTATEEERR 407
Query: 865 TLLYERILSTLHNGVVIGDKKFEFLAFSA-----HAE---LSRS*L-AEMARN--SNFFC 1011
T +YERILSTL NG+VIG+KKFEFLA S+ H+ SRS L A+ RN +F
Sbjct: 408 TGVYERILSTLRNGLVIGEKKFEFLAHSSSQLREHSVWMFASRSGLTAQDIRNWMGDFSD 467
Query: 1012 FKRFANSS*YLGLDG*F*KCGEICSKTRTVLVPPQK-----IVYTFSHGIGKVSSEFAHK 1176
K A + LG + K +P + + Y FS GIGK+S+EFA +
Sbjct: 468 IKNAAKHAARLGQAFSSSRETFDVGKDEIEFIPDVETETGGVKYCFSDGIGKISAEFAGR 527
Query: 1177 VASKCGLKCTPSA 1215
VASKCG TPSA
Sbjct: 528 VASKCGKSTTPSA 540
Score = 110 bits (275), Expect(3) = e-145
Identities = 50/90 (55%), Positives = 66/90 (73%)
Frame = +2
Query: 230 QSSAMCLEIPYGCKLPNFRENFHYYTEDEGWFTMQPGSTVSRSLDLVPFVEPPDGHKLRF 409
QSSA+CLE+P C+LPN R++F +Y E+EGW ++ G+T S + DLVP V PP G L +
Sbjct: 194 QSSAVCLELPPTCELPNLRKSFAHYKENEGWLVLESGNTFSCTSDLVPIVGPPLGINLPY 253
Query: 410 DILFKVNSLVQTGCLSGQTLDAKFFRMVDP 499
ILFK+NSLVQ GC+ GQ LD F+ +VDP
Sbjct: 254 KILFKINSLVQHGCVPGQALDVNFYELVDP 283
Score = 116 bits (291), Expect = 3e-23
Identities = 90/240 (37%), Positives = 121/240 (50%), Gaps = 39/240 (16%)
Frame = +2
Query: 1007 FASKGSLTAASIWDWMADF---RNVAKYAARLGQFWFLHRRLYTHFLMGLEKFLPNLH-- 1171
FAS+ LTA I +WM DF +N AK+AARLGQ + R + +E F+P++
Sbjct: 447 FASRSGLTAQDIRNWMGDFSDIKNAAKHAARLGQAFSSSRETFDVGKDEIE-FIPDVETE 505
Query: 1172 ---IKW---------------RVSVV*NVRRLPW-----YGGYKGVVTVDPRSVKKLYLR 1282
+K+ RV+ P GGYKGVV VDP KKL LR
Sbjct: 506 TGGVKYCFSDGIGKISAEFAGRVASKCGKSTTPSAFQIRLGGYKGVVAVDPTLSKKLALR 565
Query: 1283 PM*V*VKGNQTR-----------CFVMEQVSTVFSQSSSNQPLVYSWRQ*LCI*IKTKQK 1429
+ N T+ CF+ Q+ T+ S + LV+ + KQ
Sbjct: 566 DSMCKYQSNNTKLDVLAWSRYQPCFLNRQLITLLS-TLGVPDLVF----------EKKQN 614
Query: 1430 EAVDQLDSILTDPLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKL 1609
EA+ QL+ +L DP A EALE++ E T++LKEML CGY+PD EPFLS+MLQ F A+KL
Sbjct: 615 EALKQLEGVLADPSSALEALEMIFQGEVTDVLKEMLACGYEPDAEPFLSLMLQAFCASKL 674
>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
Length = 1110
Score = 236 bits (601), Expect(3) = e-141
Identities = 124/240 (51%), Positives = 155/240 (64%), Gaps = 1/240 (0%)
Frame = +3
Query: 1290 KFKSKVTKLDVLSWSKFQPCFLNRQVISLWFTLGVSDYVFE*KQNKKKQSINWIQF*PTH 1469
K++S TKLDVL+WSK+QPCFLNRQ+I+L TLGV D+VFE +Q + ++ + P
Sbjct: 582 KYQSDNTKLDVLAWSKYQPCFLNRQIITLLSTLGVKDHVFEKRQREAVAQLDDVLIDPMR 641
Query: 1470 *RRTKHLRSCPQQKPQISSRKCFCVVTSLIKSHSFQ*CFKHFARRSCSELRTRTRIFVPK 1649
+ L S P + I C + + F +LR + R+F+PK
Sbjct: 642 AQEALDLMS-PGENTHILKEMLKCGYEPDGEPFLSM-MLQTFRASKLLDLRVKARVFIPK 699
Query: 1650 GRSMMGCLDETATLEYGQVFVQVSRIGRNKLCGDSFSMLNGNGPADTV-GKVVVAKNPCL 1826
R MMGCLDET L+YGQVFV+ S + L DS+ N D V GKVVVAKNPCL
Sbjct: 700 ARQMMGCLDETGILKYGQVFVRYSGAVKRGLFDDSYDNSTANERFDPVRGKVVVAKNPCL 759
Query: 1827 HPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHPNECSGSDLDGDVYFVCWDQELIPRRQ 2006
HPGD+RVL AV+VP L HMVDCVVFP+ G+RPHPNECSGSDLDGD+YFVCWD +LIP +Q
Sbjct: 760 HPGDVRVLTAVDVPELRHMVDCVVFPKNGKRPHPNECSGSDLDGDIYFVCWDSDLIPTKQ 819
Score = 214 bits (545), Expect(3) = e-141
Identities = 123/259 (47%), Positives = 160/259 (61%), Gaps = 20/259 (7%)
Frame = +1
Query: 499 PLSPSVNHIICALEKLFHLKDCCYEPVNWLSEQYLEYSLSANPPRSTSISLSDGLVYVRR 678
P + +I ALEKL++LK+CCY P WL EQY Y S P+S +I L DGLVYV R
Sbjct: 300 PAKHDIRYIEHALEKLYYLKECCYNPAAWLKEQYERYRTSKEHPKSPAICLDDGLVYVHR 359
Query: 679 VQVTPLKVYFLGPEINVSNRVLRYYREHIDNFIRISFVDEDSEKIRSTDLSARATMNDEK 858
VQVTP +VYF GPE+NVSNRVLR+YR++IDNF+R+SFVDE+ +K+ STDLS R DE
Sbjct: 360 VQVTPTRVYFSGPEVNVSNRVLRHYRDYIDNFLRVSFVDEEWDKMYSTDLSPRVAAGDEN 419
Query: 859 KQTLLYERILSTLHNGVVIGDKKFEFLAFSAHAELSRS*LAEMARNSNFFC--------- 1011
K+T LYER++S L +GV IGD+KF+FLAFS+ ++L + L A
Sbjct: 420 KRTKLYERVISILRDGVRIGDRKFDFLAFSS-SQLRDNSLWMFAPTDGLNADGIREWMGD 478
Query: 1012 FKRFANSS*YLGLDG*F*KCGEICSKTRTVLVPPQKI----------VYTFSHGIGKVSS 1161
F N + Y G S T T+ V ++I YTFS GIGK+S
Sbjct: 479 FSSIRNVAKYAARLG-----QSFGSSTETLSVSKREIEEIQDVKNGTEYTFSDGIGKISE 533
Query: 1162 EFAHKVASKCGLK-CTPSA 1215
+FA +VA+KCG++ TPSA
Sbjct: 534 DFARQVAAKCGVRSSTPSA 552
Score = 104 bits (259), Expect(3) = e-141
Identities = 50/90 (55%), Positives = 63/90 (70%)
Frame = +2
Query: 230 QSSAMCLEIPYGCKLPNFRENFHYYTEDEGWFTMQPGSTVSRSLDLVPFVEPPDGHKLRF 409
QSS++CL++PYG +LPNFR+NF YY E E F ++ G S + DLVP V PP KL +
Sbjct: 211 QSSSLCLQLPYGMRLPNFRDNFLYYKESETPFRLETGVPFSHNSDLVPIVRPPIDIKLPY 270
Query: 410 DILFKVNSLVQTGCLSGQTLDAKFFRMVDP 499
+LFKV SLVQTGCL G LD FF +V+P
Sbjct: 271 TLLFKVCSLVQTGCLPGPKLDRSFFDLVNP 300
Score = 135 bits (339), Expect = 9e-29
Identities = 98/238 (41%), Positives = 121/238 (50%), Gaps = 37/238 (15%)
Frame = +2
Query: 1007 FASKGSLTAASIWDWMADF---RNVAKYAARLGQFWFLHRRL------------------ 1123
FA L A I +WM DF RNVAKYAARLGQ +
Sbjct: 461 FAPTDGLNADGIREWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSKREIEEIQDVKNGT 520
Query: 1124 -YTHFLMGL----EKFLPNLHIKWRVSVV*NVRRLPWYGGYKGVVTVDPRSVKKLYLRPM 1288
YT F G+ E F + K V YGGYKGVV VDP S KKL LRP
Sbjct: 521 EYT-FSDGIGKISEDFARQVAAKCGVRSSTPSAFQIRYGGYKGVVAVDPSSKKKLSLRPS 579
Query: 1289 *V*VKGNQTR-----------CFVMEQVSTVFSQSSSNQPLVYSWRQ*LCI*IKTKQKEA 1435
+ + + T+ CF+ Q+ T+ S + + +Q+EA
Sbjct: 580 MLKYQSDNTKLDVLAWSKYQPCFLNRQIITLLSTLGVKDHV-----------FEKRQREA 628
Query: 1436 VDQLDSILTDPLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKL 1609
V QLD +L DP++A EAL++MSP E T+ILKEML CGY+PD EPFLSMMLQTFRA+KL
Sbjct: 629 VAQLDDVLIDPMRAQEALDLMSPGENTHILKEMLKCGYEPDGEPFLSMMLQTFRASKL 686
>ref|XP_006477872.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1082
Score = 236 bits (602), Expect(4) = e-141
Identities = 130/240 (54%), Positives = 158/240 (65%), Gaps = 1/240 (0%)
Frame = +3
Query: 1290 KFKSKVTKLDVLSWSKFQPCFLNRQVISLWFTLGVSDYVFE*KQNKKKQSINWIQF*PTH 1469
K+KS+ T LD+L+ SK+QPCFLNRQ+I+L TLG+ D+VFE KQ + ++ I P
Sbjct: 568 KYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHVFEKKQREGVAQLDAILTDPLK 627
Query: 1470 *RRTKHLRSCPQQKPQISSRKCFCVVTSLIKSHSFQ*CFKHFARRSCSELRTRTRIFVPK 1649
L S + + C ++ + F + ELRTRTRIF+
Sbjct: 628 AHEALELMSSGENT-NVLKELLMCGYKPDVEPFLLM-MLQTFRASNLLELRTRTRIFIQN 685
Query: 1650 GRSMMGCLDETATLEYGQVFVQVSRIGRNKLCGDSFSMLNGNGPADTV-GKVVVAKNPCL 1826
GR+MMGCLDET TLE GQVFVQ S R + +S + N +G V GKVVVAKNPCL
Sbjct: 686 GRAMMGCLDETGTLESGQVFVQCSASRRREFLDNSCN--NRSGELGVVEGKVVVAKNPCL 743
Query: 1827 HPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHPNECSGSDLDGDVYFVCWDQELIPRRQ 2006
HPGDMRVL+AV+VP+LHHMVDCVVFP KG+RPH NECSGSDLDGDVYFVCWD ELIP Q
Sbjct: 744 HPGDMRVLRAVDVPSLHHMVDCVVFPAKGKRPHTNECSGSDLDGDVYFVCWDHELIPPLQ 803
Score = 192 bits (488), Expect(4) = e-141
Identities = 116/262 (44%), Positives = 149/262 (56%), Gaps = 23/262 (8%)
Frame = +1
Query: 499 PLSPSVNHIICALEKLFHLKDCCYEPVNWLSEQYLEYSLSANPPRSTSISLSDGLVYVRR 678
P + +I ALE LFHL++CCYEPV WL EQY +Y LS S +++L DGL+YV +
Sbjct: 283 PTRIRMEYIEHALETLFHLRECCYEPVRWLEEQYRKYVLSRRFLTSPAVALDDGLIYVNK 342
Query: 679 VQVTPLKVYFLGPEINVSNRVLRYYREHIDNFIRISFVDEDSEKIRSTDLSARATMNDEK 858
V VTP KVYF GPEI++SNRV+R Y + IDNF+R+SFVDED +K+ ST LS + +E+
Sbjct: 343 VLVTPSKVYFSGPEISLSNRVVRSYPDEIDNFLRLSFVDEDLDKLYSTVLSPLISSTNEE 402
Query: 859 KQTLLYERILSTLHNGVVIGDKKFEFLAFSAHAE--------LSRS*LAEMARNSNFFCF 1014
+ T +YER+LSTL NG+VIGDKKFE LAFS SR L + F
Sbjct: 403 RHTTIYERVLSTLRNGIVIGDKKFETLAFSNSQVKDNSMWMFASRPELTAADIRESMGDF 462
Query: 1015 KRFANSS*YLGLDG*F*KCGEICSKTRTVL--------------VPPQKIVYTFSHGIGK 1152
+ N + Y + G+ +R L V I Y FS GIGK
Sbjct: 463 RDIKNVAKYAA------RLGQSFGSSREALHVDSSDIEIIPDVEVEDDGITYCFSDGIGK 516
Query: 1153 VSSEFAHKVASKCGLKC-TPSA 1215
+S+E A VA CG TPSA
Sbjct: 517 ISAELAEIVAKNCGFTIYTPSA 538
Score = 111 bits (278), Expect(4) = e-141
Identities = 53/90 (58%), Positives = 64/90 (71%)
Frame = +2
Query: 230 QSSAMCLEIPYGCKLPNFRENFHYYTEDEGWFTMQPGSTVSRSLDLVPFVEPPDGHKLRF 409
QSSAMCLE+P G +P ++F YY E FT+ PGS S + DLVP + PP G KL+F
Sbjct: 194 QSSAMCLELPRGAHIPKTLKDFFYYKESPVQFTLVPGSAFSCNTDLVPMISPPHGIKLQF 253
Query: 410 DILFKVNSLVQTGCLSGQTLDAKFFRMVDP 499
ILFK+NSLVQ GC+ G LDAKFFR+VDP
Sbjct: 254 KILFKINSLVQHGCIPGPALDAKFFRLVDP 283
Score = 35.4 bits (80), Expect(4) = e-141
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 33 LKIKPVNYKLELSYESIWEIQLRRPKNLNSQF 128
L V+YKLELSYESIW+I L R + ++
Sbjct: 131 LSCASVDYKLELSYESIWQIVLHRSSRHSDKY 162
Score = 135 bits (340), Expect = 7e-29
Identities = 104/260 (40%), Positives = 130/260 (50%), Gaps = 40/260 (15%)
Frame = +2
Query: 959 NYHVADLLRWQEIQTSFASKGSLTAASIWDWMADFR---NVAKYAARLGQFWFLHRRLYT 1129
N V D W FAS+ LTAA I + M DFR NVAKYAARLGQ F R
Sbjct: 433 NSQVKDNSMWM-----FASRPELTAADIRESMGDFRDIKNVAKYAARLGQS-FGSSREAL 486
Query: 1130 HFLMGLEKFLPNLHIK------------WRVS------VV*NVRRLPW--------YGGY 1231
H + +P++ ++ ++S V N + YGGY
Sbjct: 487 HVDSSDIEIIPDVEVEDDGITYCFSDGIGKISAELAEIVAKNCGFTIYTPSAFQIRYGGY 546
Query: 1232 KGVVTVDPRSVKKLYLRPM*V*VKGNQTR-----------CFVMEQVSTVFSQSSSNQPL 1378
KGVV VDP S KL LR + K T CF+ Q+ T+ S +
Sbjct: 547 KGVVAVDPTSSTKLSLRKSMLKYKSESTSLDILANSKYQPCFLNRQLITLLSTLGIRDHV 606
Query: 1379 VYSWRQ*LCI*IKTKQKEAVDQLDSILTDPLKAYEALEIMSPAETTNILKEMLLCGYKPD 1558
+ KQ+E V QLD+ILTDPLKA+EALE+MS E TN+LKE+L+CGYKPD
Sbjct: 607 -----------FEKKQREGVAQLDAILTDPLKAHEALELMSSGENTNVLKELLMCGYKPD 655
Query: 1559 QEPFLSMMLQTFRAAKLFRV 1618
EPFL MMLQTFRA+ L +
Sbjct: 656 VEPFLLMMLQTFRASNLLEL 675
>ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer
arietinum]
Length = 1126
Score = 233 bits (593), Expect(3) = e-140
Identities = 129/236 (54%), Positives = 153/236 (64%)
Frame = +3
Query: 1290 KFKSKVTKLDVLSWSKFQPCFLNRQVISLWFTLGVSDYVFE*KQNKKKQSINWIQF*PTH 1469
K+ S TKLDVL+ SK+QPC+LNRQ+I+L TL V D VFE KQ + +N I
Sbjct: 599 KYDSDNTKLDVLACSKYQPCYLNRQLITLLSTLKVEDSVFEKKQKEAVNQLNTILTNSLK 658
Query: 1470 *RRTKHLRSCPQQKPQISSRKCFCVVTSLIKSHSFQ*CFKHFARRSCSELRTRTRIFVPK 1649
+ L S + I FC ++ + F ELR +TRIF+PK
Sbjct: 659 AQEVLDLMSTGEIT-NILKEMLFCGYKPNVEPFLSM-MLQTFRASKLLELRQKTRIFIPK 716
Query: 1650 GRSMMGCLDETATLEYGQVFVQVSRIGRNKLCGDSFSMLNGNGPADTVGKVVVAKNPCLH 1829
GR+MMG LDET TLEYG+VFVQ S N++ S+ N GKVVVAKNPCLH
Sbjct: 717 GRAMMGVLDETRTLEYGEVFVQYSN---NRISSLSYGSANS---LVVTGKVVVAKNPCLH 770
Query: 1830 PGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHPNECSGSDLDGDVYFVCWDQELIP 1997
PGD+RVL+AV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD ELIP
Sbjct: 771 PGDVRVLKAVDVPALHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIP 826
Score = 208 bits (529), Expect(3) = e-140
Identities = 126/257 (49%), Positives = 159/257 (61%), Gaps = 18/257 (7%)
Frame = +1
Query: 499 PLSPSVNHIICALEKLFHLKDCCYEPVNWLSEQYLEYSLSANPPRSTSISLSDGLVYVRR 678
PL +V+ I ALEK+++ KD CYEP WL +QY Y S P +S SISL +GLVYVRR
Sbjct: 317 PLRINVDFIEHALEKMYYSKDFCYEPARWLKDQYRMYLNSNYPLQSPSISLDNGLVYVRR 376
Query: 679 VQVTPLKVYFLGPEINVSNRVLRYYREHIDNFIRISFVDEDSEKIRSTDLSARATMNDEK 858
VQ+TP KVYF GPEINVSNRV+R++ EHIDNF+R+SFVDE+ +K+ STDLS+R ++
Sbjct: 377 VQITPCKVYFCGPEINVSNRVVRHFHEHIDNFLRVSFVDEELDKLYSTDLSSRISVG--- 433
Query: 859 KQTLLYERILSTLHNGVVIGDKKFEFLAFSAHAELSRS*LAEMARNSNFFC--------- 1011
+T +Y RILS L NG+VIGDKKFEFLAFS+ ++L + L A +
Sbjct: 434 VRTEVYNRILSILRNGIVIGDKKFEFLAFSS-SQLRENSLWMFAPTATGLTAQFIRAWMG 492
Query: 1012 -FKRFANSS*YLG-LDG*F*KCGEICSKTRTVL-------VPPQKIVYTFSHGIGKVSSE 1164
F + N + Y L F E S R + V I Y FS GIGK+S E
Sbjct: 493 DFSQIRNVAKYAARLGQSFGSSTETLSVNRNEIEIIPDAQVKHDTIEYVFSDGIGKISLE 552
Query: 1165 FAHKVASKCGLKCTPSA 1215
FA +VA KCG TPSA
Sbjct: 553 FARRVAKKCGYDSTPSA 569
Score = 108 bits (269), Expect(3) = e-140
Identities = 53/91 (58%), Positives = 65/91 (71%)
Frame = +2
Query: 230 QSSAMCLEIPYGCKLPNFRENFHYYTEDEGWFTMQPGSTVSRSLDLVPFVEPPDGHKLRF 409
QSSA+CLE+P PN RE F +Y E+EG +T++ GS S +LD+VP V PP G + F
Sbjct: 228 QSSAICLELPCDRDFPNIREYFVHYQENEGQYTLESGSPFSHNLDVVPIVAPPQGIYIPF 287
Query: 410 DILFKVNSLVQTGCLSGQTLDAKFFRMVDPL 502
DILFKVNSLVQ GCLSG LD F+ +VDPL
Sbjct: 288 DILFKVNSLVQHGCLSGSELDNAFYCLVDPL 318
Score = 128 bits (321), Expect = 1e-26
Identities = 99/255 (38%), Positives = 124/255 (48%), Gaps = 40/255 (15%)
Frame = +2
Query: 1025 LTAASIWDWMADF---RNVAKYAARLGQFW---------------------FLHRRLYTH 1132
LTA I WM DF RNVAKYAARLGQ + H +
Sbjct: 482 LTAQFIRAWMGDFSQIRNVAKYAARLGQSFGSSTETLSVNRNEIEIIPDAQVKHDTIEYV 541
Query: 1133 FLMGLEKFLPNLHIKWRVSVV*NVRRLPW-----YGGYKGVVTVDPRSVKKLYLRPM*V* 1297
F G+ K +L RV+ P YGGYKGVV VDP S KL LR
Sbjct: 542 FSDGIGKI--SLEFARRVAKKCGYDSTPSAFQIRYGGYKGVVAVDPTSSVKLSLRKSMYK 599
Query: 1298 VKGNQTR-----------CFVMEQVSTVFSQSSSNQPLVYSWRQ*LCI*IKTKQKEAVDQ 1444
+ T+ C++ Q+ T+ S + + KQKEAV+Q
Sbjct: 600 YDSDNTKLDVLACSKYQPCYLNRQLITLLSTLKVEDSV-----------FEKKQKEAVNQ 648
Query: 1445 LDSILTDPLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLFRVAD 1624
L++ILT+ LKA E L++MS E TNILKEML CGYKP+ EPFLSMMLQTFRA+KL +
Sbjct: 649 LNTILTNSLKAQEVLDLMSTGEITNILKEMLFCGYKPNVEPFLSMMLQTFRASKLLELRQ 708
Query: 1625 *DKDICSKGKINDGM 1669
+ KG+ G+
Sbjct: 709 KTRIFIPKGRAMMGV 723
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 244 bits (622), Expect(3) = e-139
Identities = 133/239 (55%), Positives = 152/239 (63%)
Frame = +3
Query: 1290 KFKSKVTKLDVLSWSKFQPCFLNRQVISLWFTLGVSDYVFE*KQNKKKQSINWIQF*PTH 1469
K++S+ TKLDVL+WSK+QPCFLNRQ+I+L TLGV DY FE KQ + +N + P
Sbjct: 588 KYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLE 647
Query: 1470 *RRTKHLRSCPQQKPQISSRKCFCVVTSLIKSHSFQ*CFKHFARRSCSELRTRTRIFVPK 1649
+ L S P + I C + + F ELRT+ RIFV K
Sbjct: 648 AQEALELMS-PGENTNILKEMLLCGYKPDAEPFLSM-MLETFRASKLLELRTKARIFVQK 705
Query: 1650 GRSMMGCLDETATLEYGQVFVQVSRIGRNKLCGDSFSMLNGNGPADTVGKVVVAKNPCLH 1829
GRSMMGCLDET TL YGQVFVQ FS GKV+VAKNPCLH
Sbjct: 706 GRSMMGCLDETRTLNYGQVFVQ-------------FSGSRSERRFIVQGKVIVAKNPCLH 752
Query: 1830 PGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHPNECSGSDLDGDVYFVCWDQELIPRRQ 2006
PGD+RVL+AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGDVYFVCWD ELIP +Q
Sbjct: 753 PGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQ 811
Score = 201 bits (510), Expect(3) = e-139
Identities = 124/245 (50%), Positives = 154/245 (62%), Gaps = 17/245 (6%)
Frame = +1
Query: 532 ALEKLFHLKDCCYEPVNWLSEQYLEYSLSANPPRSTSISLSDGLVYVRRVQVTPLKVYFL 711
ALEKL++L++CCYEP WL E+Y +S S S +ISL +GLVYVRRVQ+TP +VYF
Sbjct: 320 ALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVYVRRVQITPSRVYFC 379
Query: 712 GPEINVSNRVLRYYREHIDNFIRISFVDEDSEKIRSTDLSARATMNDEKKQTLLYERILS 891
GPEINVSNRVLR + IDNF+RISFVDE+ EKI ST++ AR ++T +Y+RILS
Sbjct: 380 GPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQARG------RRTGIYKRILS 433
Query: 892 TLHNGVVIGDKKFEFLAF--------SAHAELSRS*LAEMARNSNFFCFKRFANSS*YLG 1047
TL NG+VIG+K+FEFLAF SA SR L S F + N + Y
Sbjct: 434 TLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIRNVAKYAA 493
Query: 1048 -LDG*F*KCGEI--CSKTRTVLVPPQKIV-----YTFSHGIGKVSSEFAHKVASKCGLK- 1200
L F E SK L+P +I+ Y F GIGK+S+EFA KVA+KC LK
Sbjct: 494 RLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFPDGIGKISAEFAKKVAAKCRLKG 553
Query: 1201 CTPSA 1215
CTPSA
Sbjct: 554 CTPSA 558
Score = 103 bits (256), Expect(3) = e-139
Identities = 50/90 (55%), Positives = 63/90 (70%)
Frame = +2
Query: 230 QSSAMCLEIPYGCKLPNFRENFHYYTEDEGWFTMQPGSTVSRSLDLVPFVEPPDGHKLRF 409
QSS +CLE+P+ +LPNFRENF YY E+EG ++ GS+ S +L LVP V P L F
Sbjct: 220 QSSVLCLELPHNLQLPNFRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPF 279
Query: 410 DILFKVNSLVQTGCLSGQTLDAKFFRMVDP 499
+ILFKVN LVQ GC+ G LD F+R+VDP
Sbjct: 280 EILFKVNLLVQNGCIPGPALDDTFYRLVDP 309
Score = 137 bits (344), Expect = 2e-29
Identities = 101/255 (39%), Positives = 130/255 (50%), Gaps = 39/255 (15%)
Frame = +2
Query: 1007 FASKGSLTAASIWDWMADF---RNVAKYAARLGQFW---------------------FLH 1114
FAS+ LTAA I WM +F RNVAKYAARLGQ + +
Sbjct: 464 FASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMK 523
Query: 1115 RRLYTHFLMGLEK----FLPNLHIKWRVSVV*NVRRLPWYGGYKGVVTVDPRSVKKLYLR 1282
+ F G+ K F + K R+ GG+KGVV +DP S KL LR
Sbjct: 524 DGIKYVFPDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLR 583
Query: 1283 PM*V*VKGNQTR-----------CFVMEQVSTVFSQSSSNQPLVYSWRQ*LCI*IKTKQK 1429
+ T+ CF+ Q+ T+ S Y++ + KQ+
Sbjct: 584 KSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPD---YAFEK--------KQR 632
Query: 1430 EAVDQLDSILTDPLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKL 1609
E VDQL+++LTDPL+A EALE+MSP E TNILKEMLLCGYKPD EPFLSMML+TFRA+KL
Sbjct: 633 EVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKL 692
Query: 1610 FRVAD*DKDICSKGK 1654
+ + KG+
Sbjct: 693 LELRTKARIFVQKGR 707
>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
Length = 1109
Score = 241 bits (616), Expect(3) = e-139
Identities = 133/239 (55%), Positives = 154/239 (64%)
Frame = +3
Query: 1290 KFKSKVTKLDVLSWSKFQPCFLNRQVISLWFTLGVSDYVFE*KQNKKKQSINWIQF*PTH 1469
K++S+ TKLDVL+WSK+QPCFLNRQ+I+L TLGV D+ FE KQ + +N I P
Sbjct: 588 KYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLK 647
Query: 1470 *RRTKHLRSCPQQKPQISSRKCFCVVTSLIKSHSFQ*CFKHFARRSCSELRTRTRIFVPK 1649
+ L S P + I C + + F ELRT++RIFV
Sbjct: 648 AQEALELMS-PGENTNILKEMLLCGYEPDAEPFLSM-MLQTFRASKLLELRTKSRIFVAN 705
Query: 1650 GRSMMGCLDETATLEYGQVFVQVSRIGRNKLCGDSFSMLNGNGPADTVGKVVVAKNPCLH 1829
GRSMMGCLDET TL+YGQVFVQVS F + GKVVVAKNPCLH
Sbjct: 706 GRSMMGCLDETRTLDYGQVFVQVS----GSRSEQRFIVQ---------GKVVVAKNPCLH 752
Query: 1830 PGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHPNECSGSDLDGDVYFVCWDQELIPRRQ 2006
PGD+RVL AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD ELIP +Q
Sbjct: 753 PGDVRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQ 811
Score = 192 bits (488), Expect(3) = e-139
Identities = 122/250 (48%), Positives = 147/250 (58%), Gaps = 22/250 (8%)
Frame = +1
Query: 532 ALEKLFHLKDCCYEPVNWLSEQYLEYSLSANPPRSTSISLSDGLVYVRRVQVTPLKVYFL 711
ALEKL++LK+CC+EP WL EQY Y S P S ISL DGLV VRRVQ+TP +VYF
Sbjct: 320 ALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVISLDDGLVNVRRVQITPSRVYFC 379
Query: 712 GPEINVSNRVLRYYREHIDNFIRISFVDEDSEKIRSTDLSARATMNDEKKQTLLYERILS 891
GPEINVSNRVLR++ + IDNF+RI+FVDE+ EKI STDL R + T +Y RILS
Sbjct: 380 GPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHSTDLLTR------NRITEIYGRILS 433
Query: 892 TLHNGVVIGDKKFEFLAFS--------AHAELSRS*LAEMARNSNFFCFKRFANSS*YLG 1047
TL NG+VIGDK+FEFLAFS A SR L + F + N + Y
Sbjct: 434 TLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGLTAADIRTWMGEFSKIRNVAKYAA 493
Query: 1048 LDG*F*KCGEICSKTRTVLVPPQKIV-------------YTFSHGIGKVSSEFAHKVASK 1188
G S T T+ V +I Y FS GIGK+S++FA KVA+K
Sbjct: 494 RLG-----QSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVFSDGIGKISAKFAKKVAAK 548
Query: 1189 CGLK-CTPSA 1215
C L TPSA
Sbjct: 549 CRLNGRTPSA 558
Score = 112 bits (279), Expect(3) = e-139
Identities = 52/90 (57%), Positives = 67/90 (74%)
Frame = +2
Query: 230 QSSAMCLEIPYGCKLPNFRENFHYYTEDEGWFTMQPGSTVSRSLDLVPFVEPPDGHKLRF 409
QSS +CLE+PY +LPNFRENF YY E EG F ++ GS+ SR+L+LVP V P G L +
Sbjct: 220 QSSVLCLELPYYLQLPNFRENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPY 279
Query: 410 DILFKVNSLVQTGCLSGQTLDAKFFRMVDP 499
+ILFK+N LVQ GC+ G LDA F+R+V+P
Sbjct: 280 EILFKINLLVQNGCIPGPALDANFYRLVNP 309
Score = 140 bits (354), Expect = 2e-30
Identities = 103/255 (40%), Positives = 126/255 (49%), Gaps = 39/255 (15%)
Frame = +2
Query: 1007 FASKGSLTAASIWDWMADF---RNVAKYAARLGQFWFLHRRLYTH--------------- 1132
FAS+ LTAA I WM +F RNVAKYAARLGQ + +
Sbjct: 464 FASREGLTAADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKR 523
Query: 1133 ------FLMGLEKFLPNLHIKWRVSVV*NVRRLPWY----GGYKGVVTVDPRSVKKLYLR 1282
F G+ K K N R + GG+KGVV VDP S KKL LR
Sbjct: 524 DGINYVFSDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLR 583
Query: 1283 PM*V*VKGNQTR-----------CFVMEQVSTVFSQSSSNQPLVYSWRQ*LCI*IKTKQK 1429
+ T+ CF+ Q+ T+ S + KQ+
Sbjct: 584 GSMSKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHA-----------FEEKQR 632
Query: 1430 EAVDQLDSILTDPLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKL 1609
E VDQL++ILTDPLKA EALE+MSP E TNILKEMLLCGY+PD EPFLSMMLQTFRA+KL
Sbjct: 633 EVVDQLNAILTDPLKAQEALELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKL 692
Query: 1610 FRVAD*DKDICSKGK 1654
+ + + G+
Sbjct: 693 LELRTKSRIFVANGR 707
>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
gi|548853371|gb|ERN11375.1| hypothetical protein
AMTR_s00176p00039530 [Amborella trichopoda]
Length = 1210
Score = 249 bits (636), Expect(3) = e-138
Identities = 137/244 (56%), Positives = 160/244 (65%), Gaps = 5/244 (2%)
Frame = +3
Query: 1290 KFKSKVTKLDVLSWSKFQPCFLNRQVISLWFTLGVSDYVFE*KQNKKKQSINWIQF*PTH 1469
K+ S TKLDVL++SKFQPCFLNRQVI+L TLGV D VFE KQ ++ I P
Sbjct: 665 KYSSNNTKLDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFETKQKDAVSQLDKILVDPES 724
Query: 1470 *RRTKHLRSCPQQKPQISSRKCFCVVTSLIKSHSF-Q*CFKHFARRSCSELRTRTRIFVP 1646
L S P + + FC L S F + F SEL+T+TRIF+P
Sbjct: 725 AFEALELMS-PGENVNVLKEMLFCGY--LPDSEPFLSMMLQTFRGLKLSELKTKTRIFIP 781
Query: 1647 KGRSMMGCLDETATLEYGQVFVQVSRIGRNKLCGDSFSMLNGNGPAD----TVGKVVVAK 1814
GRSMMGCLDET LEYGQVFVQ S IG +L S +N +G VGKV+VAK
Sbjct: 782 NGRSMMGCLDETGILEYGQVFVQFSAIGNRRLHEFGLSKINESGSDQRVRVVVGKVIVAK 841
Query: 1815 NPCLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHPNECSGSDLDGDVYFVCWDQELI 1994
NPCLHPGD+R+L A++VPALHHMV+CVVFPQKG+RPHPNECSGSDLDGD+YFV WD LI
Sbjct: 842 NPCLHPGDVRILTAIDVPALHHMVNCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDPMLI 901
Query: 1995 PRRQ 2006
P Q
Sbjct: 902 PCHQ 905
Score = 193 bits (491), Expect(3) = e-138
Identities = 120/251 (47%), Positives = 147/251 (58%), Gaps = 23/251 (9%)
Frame = +1
Query: 532 ALEKLFHLKDCCYEPVNWLSEQYLEYSLSANPPRSTSISLSDGLVYVRRVQVTPLKVYFL 711
+LE + L +CC EP WL EQY +Y P +ISL GLVYV RVQVTP KVYF
Sbjct: 395 SLEDISRLTNCCLEPAKWLQEQYKKYRNLPRRPSPAAISLEPGLVYVHRVQVTPSKVYFY 454
Query: 712 GPEINVSNRVLRYYREHIDNFIRISFVDEDSEKIRSTDLSARATMNDEKKQTLLYERILS 891
GPE+NVSNRVLR + +IDNF+RISF+DED IRSTDLS R E+K T +Y R+LS
Sbjct: 455 GPEVNVSNRVLRQFSNYIDNFLRISFIDEDFGSIRSTDLSKRMASGAEEKHTTVYGRVLS 514
Query: 892 TLHNGVVIGDKKFEFLAFSAHAELSRS*LAEMARNSNFFCFKRF-----ANSS*YLG-LD 1053
TL NG+VIGDKKFEFLAFS + R+++ + F AN ++G
Sbjct: 515 TLKNGIVIGDKKFEFLAFS----------SSQLRDNSAWMFSPIDGITAANIRQWMGDFS 564
Query: 1054 G--*F*KCG-----EICSKTRTVLVPPQKI---------VYTFSHGIGKVSSEFAHKVAS 1185
G KC S T T+ V P+++ Y FS GIGK+S EFA KVA
Sbjct: 565 GIRNVAKCAARMGQSFGSSTETLNVKPEEVERISDIKNGKYVFSDGIGKISLEFAKKVAL 624
Query: 1186 KCGL-KCTPSA 1215
KCG + TPSA
Sbjct: 625 KCGCSEKTPSA 635
Score = 101 bits (252), Expect(3) = e-138
Identities = 50/94 (53%), Positives = 65/94 (69%)
Frame = +2
Query: 230 QSSAMCLEIPYGCKLPNFRENFHYYTEDEGWFTMQPGSTVSRSLDLVPFVEPPDGHKLRF 409
QSS++CL +P G ++PN RENF YY E G F ++ GS+ S SL LVP V PPD KL +
Sbjct: 297 QSSSLCLALPNGTRIPNIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKLPY 356
Query: 410 DILFKVNSLVQTGCLSGQTLDAKFFRMVDPLCLP 511
ILF+VNSLVQ G L G TLD +F+ +++ L P
Sbjct: 357 KILFRVNSLVQNGFLVGPTLDTEFYNLLNGLPSP 390
Score = 129 bits (323), Expect = 7e-27
Identities = 96/236 (40%), Positives = 113/236 (47%), Gaps = 35/236 (14%)
Frame = +2
Query: 1007 FASKGSLTAASIWDWMADF---RNVAKYAARLGQFWFLHRRLYTH--------------- 1132
F+ +TAA+I WM DF RNVAK AAR+GQ +
Sbjct: 545 FSPIDGITAANIRQWMGDFSGIRNVAKCAARMGQSFGSSTETLNVKPEEVERISDIKNGK 604
Query: 1133 --FLMGLEK----FLPNLHIKWRVSVV*NVRRLPWYGGYKGVVTVDPRSVKKLYLRPM*V 1294
F G+ K F + +K S YGGYKGVV VDP S KL LR
Sbjct: 605 YVFSDGIGKISLEFAKKVALKCGCSEKTPSAFQIRYGGYKGVVAVDPTSRYKLSLRGSMR 664
Query: 1295 *VKGNQTR-----------CFVMEQVSTVFSQSSSNQPLVYSWRQ*LCI*IKTKQKEAVD 1441
N T+ CF+ QV T+ S + +TKQK+AV
Sbjct: 665 KYSSNNTKLDVLAYSKFQPCFLNRQVITLLSTLGVQDNV-----------FETKQKDAVS 713
Query: 1442 QLDSILTDPLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKL 1609
QLD IL DP A+EALE+MSP E N+LKEML CGY PD EPFLSMMLQTFR KL
Sbjct: 714 QLDKILVDPESAFEALELMSPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRGLKL 769
>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
[Solanum lycopersicum]
Length = 1114
Score = 237 bits (604), Expect(3) = e-138
Identities = 127/242 (52%), Positives = 153/242 (63%), Gaps = 3/242 (1%)
Frame = +3
Query: 1290 KFKSKVTKLDVLSWSKFQPCFLNRQVISLWFTLGVSDYVFE*KQNKKKQSINWIQF*PTH 1469
K++S KLDVL WSK+QPC+LNRQ+I+L TLGV D V E KQ + ++ I
Sbjct: 581 KYESDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLK 640
Query: 1470 *RRTKHLRSCPQQKPQISSRKCFCVVTSLIKSHSFQ*CFKHFARRSCSELRTRTRIFVPK 1649
+ L S P + I C + + F +LRTR+RIF+P
Sbjct: 641 AQEALELMS-PGENTNILKAMLNCGYKPDAEPFLSM-MLQTFRASKLLDLRTRSRIFIPN 698
Query: 1650 GRSMMGCLDETATLEYGQVFVQVSRIGRNKLCGDSFSMLNGNGPADTV---GKVVVAKNP 1820
GR+MMGCLDE+ TLEYGQVFVQ + G + D N G VVVAKNP
Sbjct: 699 GRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLHPFNNSRSTNSNFILKGNVVVAKNP 758
Query: 1821 CLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHPNECSGSDLDGDVYFVCWDQELIPR 2000
CLHPGD+RVL+AVNV ALHHMVDCVVFPQKG+RPHPNECSGSDLDGD+YFVCWDQ++IP
Sbjct: 759 CLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPP 818
Query: 2001 RQ 2006
RQ
Sbjct: 819 RQ 820
Score = 216 bits (549), Expect(3) = e-138
Identities = 129/257 (50%), Positives = 160/257 (62%), Gaps = 19/257 (7%)
Frame = +1
Query: 502 LSPSVNHIIC---ALEKLFHLKDCCYEPVNWLSEQYLEYSLSANPPRSTSISLSDGLVYV 672
+ P ++ C ALEKL+++K+CCY+PV WL+EQY Y PP+S SI+L DGLVYV
Sbjct: 298 VDPRRRNVACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYV 357
Query: 673 RRVQVTPLKVYFLGPEINVSNRVLRYYREHIDNFIRISFVDEDSEKIRSTDLSARATMND 852
RRV VTP KVYF GPE+NVSNRVLR Y E IDNF+R+SFVDE+ EK+ STDL +A+
Sbjct: 358 RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGS 417
Query: 853 EKKQTLLYERILSTLHNGVVIGDKKFEFLAFSAHAELSRS*LAEMAR-----------NS 999
+ T +YERILSTL G VIGDKKFEFLAFS+ S +R
Sbjct: 418 GVR-TNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRAWMG 476
Query: 1000 NFFCFKRFANSS*YLGLDG*F*KCGEICSKTR--TVLVPPQKI---VYTFSHGIGKVSSE 1164
+F K A + LG F E S R ++P K+ Y FS GIGK+S +
Sbjct: 477 DFSQIKNVAKYAARLGQS--FGSSRETLSVLRHEIEVIPDVKVHGTSYVFSDGIGKISGD 534
Query: 1165 FAHKVASKCGLKCTPSA 1215
FAH+VASKCGL+ TPSA
Sbjct: 535 FAHRVASKCGLQYTPSA 551
Score = 91.3 bits (225), Expect(3) = e-138
Identities = 45/91 (49%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
Frame = +2
Query: 233 SSAMCLEIPYGCKLPNFRENFHYYTEDEGWFTMQPGST--VSRSLDLVPFVEPPDGHKLR 406
SS++CL+ G +LPNF E+F +Y E E T+Q G T VS+ LVP V+PP+G +
Sbjct: 210 SSSLCLQFRRGVRLPNFEESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGISIP 269
Query: 407 FDILFKVNSLVQTGCLSGQTLDAKFFRMVDP 499
+ ILFK++SLVQ GC+ G L+ FFR+VDP
Sbjct: 270 YKILFKISSLVQHGCIPGPALNVYFFRLVDP 300
Score = 137 bits (346), Expect = 1e-29
Identities = 100/238 (42%), Positives = 125/238 (52%), Gaps = 37/238 (15%)
Frame = +2
Query: 1007 FASKGSLTAASIWDWMADF---RNVAKYAARLGQFWFLHRRLYTHFLMGLEKFLPNLHIK 1177
FAS+ LTA I WM DF +NVAKYAARLGQ + R + +E +P++ +
Sbjct: 460 FASRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIE-VIPDVKVH 518
Query: 1178 W------------------RVSVV*NVRRLPW-----YGGYKGVVTVDPRSVKKLYLRPM 1288
RV+ ++ P YGGYKGVV VDP S KL LR
Sbjct: 519 GTSYVFSDGIGKISGDFAHRVASKCGLQYTPSAFQIRYGGYKGVVGVDPDSSMKLSLRKS 578
Query: 1289 *V*VKGNQTR-----------CFVMEQVSTVFSQSSSNQPLVYSWRQ*LCI*IKTKQKEA 1435
+ + + C++ Q+ T+ S + ++ KQKEA
Sbjct: 579 MSKYESDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEV-----------LEQKQKEA 627
Query: 1436 VDQLDSILTDPLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKL 1609
VDQLD+IL D LKA EALE+MSP E TNILK ML CGYKPD EPFLSMMLQTFRA+KL
Sbjct: 628 VDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKL 685
>gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1180
Score = 236 bits (603), Expect(3) = e-138
Identities = 126/242 (52%), Positives = 154/242 (63%), Gaps = 3/242 (1%)
Frame = +3
Query: 1290 KFKSKVTKLDVLSWSKFQPCFLNRQVISLWFTLGVSDYVFE*KQNKKKQSINWIQF*PTH 1469
K++S KLDVL WSK+QPC+LNRQ+++L TLGV D V E KQ + ++ I
Sbjct: 547 KYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLK 606
Query: 1470 *RRTKHLRSCPQQKPQISSRKCFCVVTSLIKSHSFQ*CFKHFARRSCSELRTRTRIFVPK 1649
+ L S P + I C + + F +LRTR+RIF+P
Sbjct: 607 AQEALELMS-PGENTNILKAMLNCGYMPDAEPFLSM-MLQTFRASKLLDLRTRSRIFIPN 664
Query: 1650 GRSMMGCLDETATLEYGQVFVQVSRIGRNKLCGDSFSMLNGNGPADTV---GKVVVAKNP 1820
GR+MMGCLDE+ TLEYGQVFVQ + G + D N G VVVAKNP
Sbjct: 665 GRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNP 724
Query: 1821 CLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHPNECSGSDLDGDVYFVCWDQELIPR 2000
CLHPGD+RVL+AV+VPALHHMVDCVVFPQKG+RPHPNECSGSDLDGD+YFVCWDQ++IP
Sbjct: 725 CLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPP 784
Query: 2001 RQ 2006
RQ
Sbjct: 785 RQ 786
Score = 214 bits (545), Expect(3) = e-138
Identities = 129/257 (50%), Positives = 161/257 (62%), Gaps = 19/257 (7%)
Frame = +1
Query: 502 LSPSVNHIIC---ALEKLFHLKDCCYEPVNWLSEQYLEYSLSANPPRSTSISLSDGLVYV 672
+ P ++ C ALEKL++LK+CCY+PV WL+EQY Y PP+S SI+L DGLVYV
Sbjct: 264 VDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYV 323
Query: 673 RRVQVTPLKVYFLGPEINVSNRVLRYYREHIDNFIRISFVDEDSEKIRSTDLSARATMND 852
RRV VTP KVYF GPE+NVSNRVLR Y E IDNF+R+SFVDE+ EK+ STDL +A+ +
Sbjct: 324 RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGN 383
Query: 853 EKKQTLLYERILSTLHNGVVIGDKKFEFLAFSAHAELSRS*LAEMAR-----------NS 999
+ T +YERILSTL G VIGDKKFEFLAFS+ S +R
Sbjct: 384 GIR-TNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMG 442
Query: 1000 NFFCFKRFANSS*YLGLDG*F*KCGEICSKTR--TVLVPPQKI---VYTFSHGIGKVSSE 1164
+F K A + LG F E S R ++P K+ Y FS GIGK+S++
Sbjct: 443 DFSQIKNVAKYAARLGQS--FGSSKETLSVLRHEIEVIPDVKVHGTSYVFSDGIGKISAD 500
Query: 1165 FAHKVASKCGLKCTPSA 1215
FA +VASKCGL+ TPSA
Sbjct: 501 FARRVASKCGLQYTPSA 517
Score = 92.4 bits (228), Expect(3) = e-138
Identities = 47/91 (51%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
Frame = +2
Query: 233 SSAMCLEIPYGCKLPNFRENFHYYTEDEGWFTMQPGST--VSRSLDLVPFVEPPDGHKLR 406
SS++CL+ G LPNF+E F +YTE E T+Q G T VS+ LVP V+PP+G +
Sbjct: 176 SSSLCLQFRRGVHLPNFQEIFFHYTERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIP 235
Query: 407 FDILFKVNSLVQTGCLSGQTLDAKFFRMVDP 499
+ ILFK++SLVQ GC+ G LD FFR+VDP
Sbjct: 236 YKILFKISSLVQHGCIPGPALDVYFFRLVDP 266
Score = 135 bits (341), Expect = 5e-29
Identities = 98/238 (41%), Positives = 124/238 (52%), Gaps = 37/238 (15%)
Frame = +2
Query: 1007 FASKGSLTAASIWDWMADF---RNVAKYAARLGQFWFLHRRLYTHFLMGLEKFLPNLHIK 1177
FAS+ LTA I WM DF +NVAKYAARLGQ + + + +E +P++ +
Sbjct: 426 FASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIE-VIPDVKVH 484
Query: 1178 W------------------RVSVV*NVRRLPW-----YGGYKGVVTVDPRSVKKLYLRPM 1288
RV+ ++ P YGGYKGVV VDP S KL LR
Sbjct: 485 GTSYVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKS 544
Query: 1289 *V*VKGNQTR-----------CFVMEQVSTVFSQSSSNQPLVYSWRQ*LCI*IKTKQKEA 1435
+ + + C++ Q+ T+ S + ++ KQKEA
Sbjct: 545 MSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDV-----------LEQKQKEA 593
Query: 1436 VDQLDSILTDPLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKL 1609
VDQLD+IL D LKA EALE+MSP E TNILK ML CGY PD EPFLSMMLQTFRA+KL
Sbjct: 594 VDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKL 651
>ref|NP_001267682.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989901|gb|ADU77016.1| RNA-dependent RNA polymerase
1b [Cucumis sativus]
Length = 1115
Score = 242 bits (618), Expect(3) = e-138
Identities = 132/242 (54%), Positives = 159/242 (65%), Gaps = 3/242 (1%)
Frame = +3
Query: 1290 KFKSKVTKLDVLSWSKFQPCFLNRQVISLWFTLGVSDYVFE*KQNKKKQSINWIQF*PTH 1469
K++S TKLDVLSWSK+ PCFLNRQ+I+L TLGV D+VFE KQ + ++ I P
Sbjct: 594 KYESTDTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLK 653
Query: 1470 *RRTKHLRSCPQQKPQISSRKCFCVVTSLIKSHSFQ*CFKHFARRS-CSELRTRTRIFVP 1646
++ L S P + +I C S F H R S ELR ++RIF+P
Sbjct: 654 AQQALELMS-PGENTKILKEMMLCGYKP--DSEPFLRMMLHTFRESKLMELRMKSRIFIP 710
Query: 1647 KGRSMMGCLDETATLEYGQVFVQVSRIGRNKLCGDS--FSMLNGNGPADTVGKVVVAKNP 1820
GR+MMGCLDET LEYG+VFVQ S +L D F + N G VVVAKNP
Sbjct: 711 NGRAMMGCLDETRNLEYGEVFVQCS--AHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNP 768
Query: 1821 CLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHPNECSGSDLDGDVYFVCWDQELIPR 2000
CLHPGD+RVL AV+VP+LHHM+DCVVFPQKG RPHPNECSGSDLDGD+YFVCWD +LIP
Sbjct: 769 CLHPGDVRVLTAVDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPP 828
Query: 2001 RQ 2006
+Q
Sbjct: 829 QQ 830
Score = 198 bits (504), Expect(3) = e-138
Identities = 114/249 (45%), Positives = 155/249 (62%), Gaps = 21/249 (8%)
Frame = +1
Query: 532 ALEKLFHLKDCCYEPVNWLSEQYLEYSLSANPPRSTSISLSDGLVYVRRVQVTPLKVYFL 711
AL+KL HLK+CCY P WL E+Y +Y NPP+ ++L++GLVYV RVQVTP KVYF
Sbjct: 320 ALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLNEGLVYVHRVQVTPCKVYFC 379
Query: 712 GPEINVSNRVLRYYREHIDNFIRISFVDEDSEKIRSTDLSARATMNDEKKQTLLYERILS 891
GPE+N+SNRVLR Y ++IDNF+R+SFVDE+ K+ ST+LS RA+ + E +T +++RILS
Sbjct: 380 GPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSPRASSSLEDGKTKIFKRILS 439
Query: 892 TLHNGVVIGDKKFEFLAFSAHA-------------ELSRS*LAEMARNSNFFCFKRFANS 1032
L +G+ IGDKKFEFLA+S+ EL+ + + + +F + A
Sbjct: 440 VLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAKIRQWM--GDFHNIRNVAKY 497
Query: 1033 S*YLGLDG*F*KCGEICS-KTRTVLVPP-------QKIVYTFSHGIGKVSSEFAHKVASK 1188
+ LG F E S R V V P + Y FS GIGK+++ FA KVA K
Sbjct: 498 AARLGQS--FGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDGIGKIAASFARKVAKK 555
Query: 1189 CGLKCTPSA 1215
CG++ TPSA
Sbjct: 556 CGIRHTPSA 564
Score = 102 bits (253), Expect(3) = e-138
Identities = 49/89 (55%), Positives = 63/89 (70%)
Frame = +2
Query: 230 QSSAMCLEIPYGCKLPNFRENFHYYTEDEGWFTMQPGSTVSRSLDLVPFVEPPDGHKLRF 409
QS+A+CLEIPYG +LPNF + F Y+ E +G FT+ GST S +++LVP V PP L +
Sbjct: 220 QSAALCLEIPYGRQLPNFHDKFAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPY 279
Query: 410 DILFKVNSLVQTGCLSGQTLDAKFFRMVD 496
ILFK+N LVQ GCL G LD F++MVD
Sbjct: 280 TILFKINLLVQQGCLPGPALDISFYQMVD 308
Score = 134 bits (338), Expect = 1e-28
Identities = 92/244 (37%), Positives = 125/244 (51%), Gaps = 40/244 (16%)
Frame = +2
Query: 1007 FASKGSLTAASIWDWMADF---RNVAKYAARLGQFWFLHRRLYTHFLMGLEKFLPNLHIK 1177
FA K LTAA I WM DF RNVAKYAARLGQ + + + K +P++ ++
Sbjct: 470 FAPKNELTAAKIRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREV-KVIPDIEVE 528
Query: 1178 W---------------------RVSVV*NVRRLPW-----YGGYKGVVTVDPRSVKKLYL 1279
+V+ +R P Y G+KGV++VDP S KL L
Sbjct: 529 SGSGVNYVFSDGIGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSL 588
Query: 1280 RPM*V*VKGNQTR-----------CFVMEQVSTVFSQSSSNQPLVYSWRQ*LCI*IKTKQ 1426
R + + T+ CF+ Q+ T+ S + ++KQ
Sbjct: 589 RNSMLKYESTDTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHV-----------FESKQ 637
Query: 1427 KEAVDQLDSILTDPLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAK 1606
+E +D+LD+I +DPLKA +ALE+MSP E T ILKEM+LCGYKPD EPFL MML TFR +K
Sbjct: 638 QELIDELDTIFSDPLKAQQALELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESK 697
Query: 1607 LFRV 1618
L +
Sbjct: 698 LMEL 701
>gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 841
Score = 236 bits (603), Expect(3) = e-138
Identities = 126/242 (52%), Positives = 154/242 (63%), Gaps = 3/242 (1%)
Frame = +3
Query: 1290 KFKSKVTKLDVLSWSKFQPCFLNRQVISLWFTLGVSDYVFE*KQNKKKQSINWIQF*PTH 1469
K++S KLDVL WSK+QPC+LNRQ+++L TLGV D V E KQ + ++ I
Sbjct: 581 KYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLK 640
Query: 1470 *RRTKHLRSCPQQKPQISSRKCFCVVTSLIKSHSFQ*CFKHFARRSCSELRTRTRIFVPK 1649
+ L S P + I C + + F +LRTR+RIF+P
Sbjct: 641 AQEALELMS-PGENTNILKAMLNCGYMPDAEPFLSM-MLQTFRASKLLDLRTRSRIFIPN 698
Query: 1650 GRSMMGCLDETATLEYGQVFVQVSRIGRNKLCGDSFSMLNGNGPADTV---GKVVVAKNP 1820
GR+MMGCLDE+ TLEYGQVFVQ + G + D N G VVVAKNP
Sbjct: 699 GRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNP 758
Query: 1821 CLHPGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHPNECSGSDLDGDVYFVCWDQELIPR 2000
CLHPGD+RVL+AV+VPALHHMVDCVVFPQKG+RPHPNECSGSDLDGD+YFVCWDQ++IP
Sbjct: 759 CLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPP 818
Query: 2001 RQ 2006
RQ
Sbjct: 819 RQ 820
Score = 214 bits (545), Expect(3) = e-138
Identities = 129/257 (50%), Positives = 161/257 (62%), Gaps = 19/257 (7%)
Frame = +1
Query: 502 LSPSVNHIIC---ALEKLFHLKDCCYEPVNWLSEQYLEYSLSANPPRSTSISLSDGLVYV 672
+ P ++ C ALEKL++LK+CCY+PV WL+EQY Y PP+S SI+L DGLVYV
Sbjct: 298 VDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYV 357
Query: 673 RRVQVTPLKVYFLGPEINVSNRVLRYYREHIDNFIRISFVDEDSEKIRSTDLSARATMND 852
RRV VTP KVYF GPE+NVSNRVLR Y E IDNF+R+SFVDE+ EK+ STDL +A+ +
Sbjct: 358 RRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGN 417
Query: 853 EKKQTLLYERILSTLHNGVVIGDKKFEFLAFSAHAELSRS*LAEMAR-----------NS 999
+ T +YERILSTL G VIGDKKFEFLAFS+ S +R
Sbjct: 418 GIR-TNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMG 476
Query: 1000 NFFCFKRFANSS*YLGLDG*F*KCGEICSKTR--TVLVPPQKI---VYTFSHGIGKVSSE 1164
+F K A + LG F E S R ++P K+ Y FS GIGK+S++
Sbjct: 477 DFSQIKNVAKYAARLGQS--FGSSKETLSVLRHEIEVIPDVKVHGTSYVFSDGIGKISAD 534
Query: 1165 FAHKVASKCGLKCTPSA 1215
FA +VASKCGL+ TPSA
Sbjct: 535 FARRVASKCGLQYTPSA 551
Score = 92.0 bits (227), Expect(3) = e-138
Identities = 46/91 (50%), Positives = 63/91 (69%), Gaps = 2/91 (2%)
Frame = +2
Query: 233 SSAMCLEIPYGCKLPNFRENFHYYTEDEGWFTMQPGST--VSRSLDLVPFVEPPDGHKLR 406
SS++CL+ G LPNF+E+F +YTE E T+Q G T VS+ LVP V+PP+G +
Sbjct: 210 SSSLCLQFRRGVHLPNFQESFFHYTERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIP 269
Query: 407 FDILFKVNSLVQTGCLSGQTLDAKFFRMVDP 499
+ ILFK++SLVQ GC+ G L+ FFR+VDP
Sbjct: 270 YKILFKISSLVQHGCIPGPALNVYFFRLVDP 300
Score = 135 bits (341), Expect = 5e-29
Identities = 98/238 (41%), Positives = 124/238 (52%), Gaps = 37/238 (15%)
Frame = +2
Query: 1007 FASKGSLTAASIWDWMADF---RNVAKYAARLGQFWFLHRRLYTHFLMGLEKFLPNLHIK 1177
FAS+ LTA I WM DF +NVAKYAARLGQ + + + +E +P++ +
Sbjct: 460 FASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIE-VIPDVKVH 518
Query: 1178 W------------------RVSVV*NVRRLPW-----YGGYKGVVTVDPRSVKKLYLRPM 1288
RV+ ++ P YGGYKGVV VDP S KL LR
Sbjct: 519 GTSYVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKS 578
Query: 1289 *V*VKGNQTR-----------CFVMEQVSTVFSQSSSNQPLVYSWRQ*LCI*IKTKQKEA 1435
+ + + C++ Q+ T+ S + ++ KQKEA
Sbjct: 579 MSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDV-----------LEQKQKEA 627
Query: 1436 VDQLDSILTDPLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKL 1609
VDQLD+IL D LKA EALE+MSP E TNILK ML CGY PD EPFLSMMLQTFRA+KL
Sbjct: 628 VDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKL 685
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 240 bits (613), Expect(3) = e-138
Identities = 132/239 (55%), Positives = 151/239 (63%)
Frame = +3
Query: 1290 KFKSKVTKLDVLSWSKFQPCFLNRQVISLWFTLGVSDYVFE*KQNKKKQSINWIQF*PTH 1469
K++S+ TKLDVL+WSK+QPCFLNRQ+I+L TLGV D FE KQ + +N + P
Sbjct: 588 KYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLE 647
Query: 1470 *RRTKHLRSCPQQKPQISSRKCFCVVTSLIKSHSFQ*CFKHFARRSCSELRTRTRIFVPK 1649
+ L S P + I C + + F ELRT+ RIFV K
Sbjct: 648 AQEALELMS-PGENTNILKEMLLCGYKPDAEPFLSM-MLETFRASKLLELRTKARIFVQK 705
Query: 1650 GRSMMGCLDETATLEYGQVFVQVSRIGRNKLCGDSFSMLNGNGPADTVGKVVVAKNPCLH 1829
GRSMMGCLDET TL YGQVFVQ FS GKV+VAKNPCLH
Sbjct: 706 GRSMMGCLDETRTLNYGQVFVQ-------------FSGSRSERRFIVQGKVIVAKNPCLH 752
Query: 1830 PGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHPNECSGSDLDGDVYFVCWDQELIPRRQ 2006
PGD+RVL+AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGDVYFVCWD ELIP +Q
Sbjct: 753 PGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQ 811
Score = 202 bits (515), Expect(3) = e-138
Identities = 125/245 (51%), Positives = 155/245 (63%), Gaps = 17/245 (6%)
Frame = +1
Query: 532 ALEKLFHLKDCCYEPVNWLSEQYLEYSLSANPPRSTSISLSDGLVYVRRVQVTPLKVYFL 711
ALEKL++L++CCYEP WL E+Y +S S S +ISL +GLVYVRRVQ+TP +VYF
Sbjct: 320 ALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVYVRRVQITPSRVYFC 379
Query: 712 GPEINVSNRVLRYYREHIDNFIRISFVDEDSEKIRSTDLSARATMNDEKKQTLLYERILS 891
GPEINVSNRVLR + IDNF+RISFVDE+ EKI ST++ AR ++T +Y+RILS
Sbjct: 380 GPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQARG------RRTGIYKRILS 433
Query: 892 TLHNGVVIGDKKFEFLAF--------SAHAELSRS*LAEMARNSNFFCFKRFANSS*YLG 1047
TL NG+VIG+K+FEFLAF SA SR L S F + N + Y
Sbjct: 434 TLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIRNVAKYAA 493
Query: 1048 -LDG*F*KCGEI--CSKTRTVLVPPQKIV-----YTFSHGIGKVSSEFAHKVASKCGLK- 1200
L F E SK L+P +I+ Y FS GIGK+S+EFA KVA+KC LK
Sbjct: 494 RLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSDGIGKISAEFAKKVAAKCRLKG 553
Query: 1201 CTPSA 1215
CTPSA
Sbjct: 554 CTPSA 558
Score = 99.0 bits (245), Expect(3) = e-138
Identities = 49/90 (54%), Positives = 62/90 (68%)
Frame = +2
Query: 230 QSSAMCLEIPYGCKLPNFRENFHYYTEDEGWFTMQPGSTVSRSLDLVPFVEPPDGHKLRF 409
QSS + LE+P+ +LPNFRENF YY E+EG ++ GS+ S +L LVP V P L F
Sbjct: 220 QSSVLWLELPHNLQLPNFRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPF 279
Query: 410 DILFKVNSLVQTGCLSGQTLDAKFFRMVDP 499
+ILFKVN LVQ GC+ G LD F+R+VDP
Sbjct: 280 EILFKVNLLVQNGCIPGPALDDTFYRLVDP 309
Score = 136 bits (343), Expect = 3e-29
Identities = 100/255 (39%), Positives = 127/255 (49%), Gaps = 39/255 (15%)
Frame = +2
Query: 1007 FASKGSLTAASIWDWMADF---RNVAKYAARLGQFW---------------------FLH 1114
FAS+ LTAA I WM +F RNVAKYAARLGQ + +
Sbjct: 464 FASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMK 523
Query: 1115 RRLYTHFLMGLEK----FLPNLHIKWRVSVV*NVRRLPWYGGYKGVVTVDPRSVKKLYLR 1282
+ F G+ K F + K R+ GG+KGVV +DP S KL LR
Sbjct: 524 DGIKYVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLR 583
Query: 1283 PM*V*VKGNQTR-----------CFVMEQVSTVFSQSSSNQPLVYSWRQ*LCI*IKTKQK 1429
+ T+ CF+ Q+ T+ S + KQ+
Sbjct: 584 KSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRA-----------FEKKQR 632
Query: 1430 EAVDQLDSILTDPLKAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKL 1609
E VDQL+++LTDPL+A EALE+MSP E TNILKEMLLCGYKPD EPFLSMML+TFRA+KL
Sbjct: 633 EVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKL 692
Query: 1610 FRVAD*DKDICSKGK 1654
+ + KG+
Sbjct: 693 LELRTKARIFVQKGR 707
>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
vesca]
Length = 1119
Score = 242 bits (617), Expect(3) = e-137
Identities = 132/239 (55%), Positives = 156/239 (65%)
Frame = +3
Query: 1290 KFKSKVTKLDVLSWSKFQPCFLNRQVISLWFTLGVSDYVFE*KQNKKKQSINWIQF*PTH 1469
K++S+ TKLDVL+ SK+QPCFLNRQ+I+L TL V D+VF KQ Q +N I P
Sbjct: 586 KYESENTKLDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNAILTDPLK 645
Query: 1470 *RRTKHLRSCPQQKPQISSRKCFCVVTSLIKSHSFQ*CFKHFARRSCSELRTRTRIFVPK 1649
L S + + C ++ + F ELRT+TRIF+P
Sbjct: 646 AEEALDLMSAGEST-NVLKELLMCGYKPNVEPFLSM-MLQTFRASKLLELRTKTRIFIPD 703
Query: 1650 GRSMMGCLDETATLEYGQVFVQVSRIGRNKLCGDSFSMLNGNGPADTVGKVVVAKNPCLH 1829
GR+MMGCLDET TLEYGQVFVQ S R +L D + + GKVVVAKNPCLH
Sbjct: 704 GRAMMGCLDETRTLEYGQVFVQFSGKRRRQLFDDICIHSSLDSCFIIEGKVVVAKNPCLH 763
Query: 1830 PGDMRVLQAVNVPALHHMVDCVVFPQKGQRPHPNECSGSDLDGDVYFVCWDQELIPRRQ 2006
PGD+RVL+AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD ELIP +Q
Sbjct: 764 PGDVRVLRAVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPPKQ 822
Score = 195 bits (496), Expect(3) = e-137
Identities = 117/246 (47%), Positives = 152/246 (61%), Gaps = 18/246 (7%)
Frame = +1
Query: 532 ALEKLFHLKDCCYEPVNWLSEQYLEYSLSANPPRSTSISLSDGLVYVRRVQVTPLKVYFL 711
AL+KL +LK+ CYEP WL+E+Y +Y +S PP+ ISL GLVYVRRVQ+TP KVYF
Sbjct: 316 ALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKPALISLDSGLVYVRRVQITPSKVYFS 375
Query: 712 GPEINVSNRVLRYYREHIDNFIRISFVDEDSEKIRSTDLSARATMNDEKKQTLLYERILS 891
GPE+NVSNR+LR Y IDNF+R+SFVDE+ EK+ STDLS R + ++T +Y R+LS
Sbjct: 376 GPEVNVSNRILRQYSSDIDNFLRVSFVDEEMEKLYSTDLSPRTS----TRKTRIYNRVLS 431
Query: 892 TLHNGVVIGDKKFEFLAFSAHAELSRS*LAEMAR---------NSNFFCFKRFANSS*YL 1044
L +G+V+G KKFEFLAFS+ ++L + L A + F++ N + Y
Sbjct: 432 VLRDGIVVGKKKFEFLAFSS-SQLRENSLWMFAPTDEDSADTIRAGMGDFRQIRNVAKYA 490
Query: 1045 G-LDG*F*KCGEICSKTRT-------VLVPPQKIVYTFSHGIGKVSSEFAHKVASKCGLK 1200
L F E S R V V I Y FS GIGK+S++FA +VA KCG K
Sbjct: 491 ARLGQSFGSSTETLSVGRNEMEVIPDVTVNSCGIKYVFSDGIGKISADFAERVAKKCGYK 550
Query: 1201 C-TPSA 1215
TPSA
Sbjct: 551 AFTPSA 556
Score = 103 bits (256), Expect(3) = e-137
Identities = 50/90 (55%), Positives = 64/90 (71%)
Frame = +2
Query: 230 QSSAMCLEIPYGCKLPNFRENFHYYTEDEGWFTMQPGSTVSRSLDLVPFVEPPDGHKLRF 409
QSS++CL + +LP+F ENF YY + +G F ++ GST SR+ DLVP V P G L +
Sbjct: 216 QSSSLCLVLTSDGELPDFEENFAYYKKTDGQFILENGSTFSRNRDLVPIVGSPAGIDLPY 275
Query: 410 DILFKVNSLVQTGCLSGQTLDAKFFRMVDP 499
DILFK+N LVQ GCLSG TLD F+R+VDP
Sbjct: 276 DILFKINLLVQQGCLSGPTLDNNFYRLVDP 305
Score = 117 bits (292), Expect = 3e-23
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 11/144 (7%)
Frame = +2
Query: 1220 YGGYKGVVTVDPRSVKKLYLRPM*V*VKGNQTR-----------CFVMEQVSTVFSQSSS 1366
YGGYKGVV VDP S KL LR + T+ CF+ Q+ T+ S
Sbjct: 561 YGGYKGVVAVDPTSSMKLSLRKSMSKYESENTKLDVLACSKYQPCFLNRQLITLLSTLEV 620
Query: 1367 NQPLVYSWRQ*LCI*IKTKQKEAVDQLDSILTDPLKAYEALEIMSPAETTNILKEMLLCG 1546
+ KQ+ AV QL++ILTDPLKA EAL++MS E+TN+LKE+L+CG
Sbjct: 621 QDHVFLK-----------KQRAAVQQLNAILTDPLKAEEALDLMSAGESTNVLKELLMCG 669
Query: 1547 YKPDQEPFLSMMLQTFRAAKLFRV 1618
YKP+ EPFLSMMLQTFRA+KL +
Sbjct: 670 YKPNVEPFLSMMLQTFRASKLLEL 693