BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver25_contig00004805
         (2221 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               274   3e-72
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   259   1e-71
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           258   1e-71
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   273   6e-71
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...   251   4e-68
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   261   1e-67
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   249   3e-65
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   250   7e-65
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       239   5e-64
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]           251   1e-63
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   224   2e-63
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               233   1e-60
gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]       241   1e-60
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   224   2e-60
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...   227   3e-60
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA...   224   7e-60
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali...   231   8e-58
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...   230   2e-57
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678...   226   4e-56
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                204   2e-51

>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  274 bits (700), Expect(2) = 3e-72
 Identities = 145/418 (34%), Positives = 230/418 (55%), Gaps = 11/418 (2%)
 Frame = -1

Query: 1414 LPVRYLGVPLLSSRLSYQDCLPLISRVSKRTKSWKAKKLSYAGRLLLIKVVLTGMIFFWL 1235
            LPVRYLG+PL++ RL+  D  PL+ ++ KR  +W  +  S+AGR  LIK VL  +  FWL
Sbjct: 414  LPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWL 473

Query: 1234 SCFILPKRAIKELNSICKKFLWSGPDLGTKHHPISWDVVSRPYSEGGLGIRNLEITNATS 1055
            + F LP++ I+E++ +C  FLWSG ++ +    ISWD+V +P +EGGLG+RNL+  N  S
Sbjct: 474  AAFRLPRQCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKPKAEGGLGLRNLKEANDVS 533

Query: 1054 NLRHLWNLVSGKVTIWTDWIRNNLIKDNDFWTLKVHQD-SSWCWRRILEQRDVAKDLFLH 878
             L+ +W ++S   ++WT W+   LI+    W+LK      SW WR+IL+ RDVAK     
Sbjct: 534  CLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDVAKSFSRV 593

Query: 877  IIGDGEQTNFLSDLWHPNGRLCNWLSNDIIEDLCGGRDCKVSEFLDGEGWYFPDCMDEDS 698
             +G+GE  +F  D W  +GRL + + +    DL   R+  V+     + W         +
Sbjct: 594  EVGNGESASFWYDHWSAHGRLIDTVGDKGTIDLGIPREASVA-----DAWTRRSRRRHRT 648

Query: 697  NL-----SIMKLQEVEFDMSCSDLIIWKPSP---KGVYTMKETYNSLRGDYENVQWGSLV 542
            +L      +M  Q +       D ++W+      K  ++ ++T++ ++     V W   V
Sbjct: 649  SLLNEIEEMMAYQRIHHS-DAEDTVLWRGKNDVFKPHFSTRDTWHLIKATSSTVSWHKGV 707

Query: 541  WFQHHIPRHSFITWLGLHGRLKTREKMVKWGLMQNAP--CVLCDDGSENEDHIFHSCSFA 368
            WF+H  P+++  TWL +H RL T ++M+KW    +    CVLC + S+  +H+F SCS+A
Sbjct: 708  WFRHATPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGNCVLCTNNSKTLEHLFFSCSYA 767

Query: 367  SDIWRGLLIKMGYSRNLCSTWRDEITWCITTFVGHGLISGIKKLIFNSFVYHVWRERN 194
            S +W  L    G  +   ST    +   I+T     +   + + IF + +YHVWRERN
Sbjct: 768  STVWAAL--AKGIWKTRYSTRWSHLLTHISTHFQDRVEGFLTRYIFQATIYHVWRERN 823



 Score = 27.7 bits (60), Expect(2) = 3e-72
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
 Frame = -3

Query: 1658 GFHQCCSEFFHEVQALG------RDDVLVFFKGSLAAASSLKQAMENFNNISGLEMNKQK 1497
            GFH  C       Q LG       DD++V   G   +   + +  + F   SGL ++ +K
Sbjct: 335  GFHPKC-------QRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEK 387

Query: 1496 TALFSSSV 1473
            + L+ + V
Sbjct: 388  STLYMAGV 395


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  259 bits (661), Expect(2) = 1e-71
 Identities = 143/440 (32%), Positives = 224/440 (50%), Gaps = 4/440 (0%)
 Frame = -1

Query: 1417 SLPVRYLGVPLLSSRLSYQDCLPLISRVSKRTKSWKAKKLSYAGRLLLIKVVLTGMIFFW 1238
            + P+RYLG+PL+  +L   D  PL+ ++S R +SW +K LS+AGR  LI  V+ G+I FW
Sbjct: 619  TFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFW 678

Query: 1237 LSCFILPKRAIKELNSICKKFLWSGPDLGTKHHPISWDVVSRPYSEGGLGIRNLEITNAT 1058
            +S F+LPK  IK++ S+C KFLW+G   G K   +SW     P SEGGLG R+    N T
Sbjct: 679  MSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGFRSFGEWNKT 738

Query: 1057 SNLRHLWNLVSGKVTIWTDWIRNNLIKDNDFWTLKVHQDSSWCWRRILEQRDVAKDLFLH 878
              LR +W L     ++W  W R++ +    FW +   Q   W W+ +L  R +A+     
Sbjct: 739  LLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKA 798

Query: 877  IIGDGEQTNFLSDLWHPNGRLCNWLSNDIIEDLCGGRDCKVSEFLDGEGWYFP--DCMDE 704
             +G+G   +F  D W   G L  +L +     L      KV++ +DG GW  P    +  
Sbjct: 799  KVGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIPFSAKVADAIDGSGWRLPLSRSLTA 858

Query: 703  DSNLSIMKLQEVEFDMSCSDLIIWKPSPKGV--YTMKETYNSLRGDYENVQWGSLVWFQH 530
            DS LS +        +  SD   W         ++  +T+  LR      +W   VWF+ 
Sbjct: 859  DSILSHLASLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTWEVLRPRRPVKRWAKSVWFKG 918

Query: 529  HIPRHSFITWLGLHGRLKTREKMVKWGLMQNAPCVLCDDGSENEDHIFHSCSFASDIWRG 350
             +P+H+F  W     RL TR+++V WGL+ +A C LC   +E  DH+   C F+S +WR 
Sbjct: 919  AVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLCDFSSQVWRM 978

Query: 349  LLIKMGYSRNLCSTWRDEITWCITTFVGHGLISGIKKLIFNSFVYHVWRERNXXXXXXXX 170
            + +++   + L  TW + ++W  T        S ++K++    VY++WR+RN        
Sbjct: 979  VFLRLCPRQRLLCTWAELLSW--TRQSTAAAPSLLRKVVAQLVVYNLWRQRNLVLHSSLR 1036

Query: 169  XSADQVGFIIIEDVRFKVLS 110
             S   V  ++  ++R  +LS
Sbjct: 1037 VSCSVVFRLVDRELRNVILS 1056



 Score = 40.8 bits (94), Expect(2) = 1e-71
 Identities = 16/45 (35%), Positives = 31/45 (68%)
 Frame = -3

Query: 1604 DDVLVFFKGSLAAASSLKQAMENFNNISGLEMNKQKTALFSSSVD 1470
            DDV++FF G  ++   + + +++F + SGL++NK K+ LF + +D
Sbjct: 559  DDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLD 603



 Score = 85.9 bits (211), Expect = 7e-14
 Identities = 52/192 (27%), Positives = 86/192 (44%)
 Frame = -1

Query: 2185 EAKEVMVSAQAVVQLHPLNADVAASEKRDVSHYAKLARHEELMLKQKSRVQWMDLGDSNS 2006
            EA E++++ Q +   +P +   AA E      +  L+  EE    Q+SRV W   GDSN+
Sbjct: 170  EAHELLITCQNLTLANP-SVSNAALELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDSNT 228

Query: 2005 HFFHCSLKERRCRNNMLSLTNVNGNILDEDKEIALECTNFFSNLFKGXXXXXXXXXXIEA 1826
            H+FH  +  R+  N + SL + NG ++D  + I   C  ++  L                
Sbjct: 229  HYFHRMVDSRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMN 288

Query: 1825 LTFNKVIGVEAADKLSAPISRDEIIYALSCIGSIKAPSPDGFTSHFFKYCWSVVETDFIN 1646
            L        +   +L    + DEI  A   +   K   PDG++  FF+  WS++  + + 
Sbjct: 289  LLLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLA 348

Query: 1645 AVQNFFMKCKLL 1610
            A+  FF   +LL
Sbjct: 349  AIHEFFDSGQLL 360


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  258 bits (660), Expect(2) = 1e-71
 Identities = 143/440 (32%), Positives = 224/440 (50%), Gaps = 4/440 (0%)
 Frame = -1

Query: 1417 SLPVRYLGVPLLSSRLSYQDCLPLISRVSKRTKSWKAKKLSYAGRLLLIKVVLTGMIFFW 1238
            + P+RYLG+PL+  +L   D  PL+ ++S R +SW +K LS+AGR  LI  V+ G+I FW
Sbjct: 619  TFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFW 678

Query: 1237 LSCFILPKRAIKELNSICKKFLWSGPDLGTKHHPISWDVVSRPYSEGGLGIRNLEITNAT 1058
            +S F+LPK  IK++ S+C KFLW+G   G K   +SW     P SEGGLG R+    N T
Sbjct: 679  MSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGFRSFGEWNKT 738

Query: 1057 SNLRHLWNLVSGKVTIWTDWIRNNLIKDNDFWTLKVHQDSSWCWRRILEQRDVAKDLFLH 878
              LR +W L     ++W  W R++ +    FW +   Q   W W+ +L  R +A+     
Sbjct: 739  LLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKA 798

Query: 877  IIGDGEQTNFLSDLWHPNGRLCNWLSNDIIEDLCGGRDCKVSEFLDGEGWYFP--DCMDE 704
             +G+G   +F  D W   G L  +L +     L      KV++ +DG GW  P    +  
Sbjct: 799  KVGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIPFSAKVADAIDGSGWRLPLSRSLTA 858

Query: 703  DSNLSIMKLQEVEFDMSCSDLIIWKPSPKGV--YTMKETYNSLRGDYENVQWGSLVWFQH 530
            DS LS +        +  SD   W         ++  +T+  LR      +W   VWF+ 
Sbjct: 859  DSILSHLASLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTWEVLRPRRPVKRWARSVWFKG 918

Query: 529  HIPRHSFITWLGLHGRLKTREKMVKWGLMQNAPCVLCDDGSENEDHIFHSCSFASDIWRG 350
             +P+H+F  W     RL TR+++V WGL+ +A C LC   +E  DH+   C F+S +WR 
Sbjct: 919  AVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLCDFSSQVWRM 978

Query: 349  LLIKMGYSRNLCSTWRDEITWCITTFVGHGLISGIKKLIFNSFVYHVWRERNXXXXXXXX 170
            + +++   + L  TW + ++W  T        S ++K++    VY++WR+RN        
Sbjct: 979  VFLRLCPRQRLLCTWAELLSW--TRQSTAAAPSLLRKVVAQLVVYNLWRQRNLVLHSSLR 1036

Query: 169  XSADQVGFIIIEDVRFKVLS 110
             S   V  ++  ++R  +LS
Sbjct: 1037 VSCSVVFRLVDRELRNVILS 1056



 Score = 40.8 bits (94), Expect(2) = 1e-71
 Identities = 16/45 (35%), Positives = 31/45 (68%)
 Frame = -3

Query: 1604 DDVLVFFKGSLAAASSLKQAMENFNNISGLEMNKQKTALFSSSVD 1470
            DDV++FF G  ++   + + +++F + SGL++NK K+ LF + +D
Sbjct: 559  DDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLD 603



 Score = 85.9 bits (211), Expect = 7e-14
 Identities = 52/192 (27%), Positives = 86/192 (44%)
 Frame = -1

Query: 2185 EAKEVMVSAQAVVQLHPLNADVAASEKRDVSHYAKLARHEELMLKQKSRVQWMDLGDSNS 2006
            EA E++++ Q +   +P +   AA E      +  L+  EE    Q+SRV W   GDSN+
Sbjct: 170  EAHELLITCQNLTLANP-SVSNAALELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDSNT 228

Query: 2005 HFFHCSLKERRCRNNMLSLTNVNGNILDEDKEIALECTNFFSNLFKGXXXXXXXXXXIEA 1826
            H+FH  +  R+  N + SL + NG ++D  + I   C  ++  L                
Sbjct: 229  HYFHRMVDSRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMN 288

Query: 1825 LTFNKVIGVEAADKLSAPISRDEIIYALSCIGSIKAPSPDGFTSHFFKYCWSVVETDFIN 1646
            L        +   +L    + DEI  A   +   K   PDG++  FF+  WS++  + + 
Sbjct: 289  LLLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLA 348

Query: 1645 AVQNFFMKCKLL 1610
            A+  FF   +LL
Sbjct: 349  AIHEFFDSGQLL 360


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  273 bits (697), Expect(2) = 6e-71
 Identities = 153/453 (33%), Positives = 238/453 (52%), Gaps = 10/453 (2%)
 Frame = -1

Query: 1426 STSSLPVRYLGVPLLSSRLSYQDCLPLISRVSKRTKSWKAKKLSYAGRLLLIKVVLTGMI 1247
            S+  LPVRYLG+PL++ RLS  DCLPL+ +V KR  SW ++ LSYAGRL LI  VL  + 
Sbjct: 763  SSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSIC 822

Query: 1246 FFWLSCFILPKRAIKELNSICKKFLWSGPDLGTKHHPISWDVVSRPYSEGGLGIRNLEIT 1067
             FWL+ F LP++ I+EL  +C  FLWSG ++ +    ISW +V +P  EGGLG+R+L+  
Sbjct: 823  NFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEA 882

Query: 1066 NATSNLRHLWNLVSGKVTIWTDWIRNNLIKDNDFWTLK-VHQDSSWCWRRILEQRDVAKD 890
            N    L+ +W +VS   ++W  W+  +L+++  FW +K      SW W+++L+ R+VAK 
Sbjct: 883  NDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKT 942

Query: 889  LFLHIIGDGEQTNFLSDLWHPNGRLCNWLSNDIIEDLCGGRDCKVSEFLDGEGWYFPDCM 710
            L    +G+G+QT+F  D W   G+L     +  + DL   R   V      E W   +  
Sbjct: 943  LSKVEVGNGKQTSFWYDNWSDLGQLLERTGDRGLIDLGISRRMTVE-----EAW--TNRR 995

Query: 709  DEDSNLSIMKLQEVEFDMS------CSDLIIWKPSP---KGVYTMKETYNSLRGDYENVQ 557
                   +  + E     S        D ++W+      +  ++ ++T++  R     V 
Sbjct: 996  QRRHRNDVYNVIEDALKKSWDTRTETEDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVP 1055

Query: 556  WGSLVWFQHHIPRHSFITWLGLHGRLKTREKMVKWGLMQNAPCVLCDDGSENEDHIFHSC 377
            W  ++WF H  P++SF +WL  HGRL T ++M+ W       C+ C    E  DH+F +C
Sbjct: 1056 WHKVIWFSHATPKYSFCSWLAAHGRLPTGDRMINWANGIATDCIFCQGTLETRDHLFFTC 1115

Query: 376  SFASDIWRGLLIKMGYSRNLCSTWRDEITWCITTFVGHGLISGIKKLIFNSFVYHVWRER 197
            SF S IW  L   + +     S W+  I   IT    H +   +++ +F + +Y VWRER
Sbjct: 1116 SFTSVIWVDLARGI-FKTQYTSHWQ-SIIEAITNSQHHRVEWFLRRYVFQATIYIVWRER 1173

Query: 196  NXXXXXXXXXSADQVGFIIIEDVRFKVLSIHCK 98
            N         +A Q+   I + +R ++ SI  K
Sbjct: 1174 NGRRHGEPPNTASQLVGWIDKQIRNQLSSICLK 1206



 Score = 24.6 bits (52), Expect(2) = 6e-71
 Identities = 9/46 (19%), Positives = 25/46 (54%)
 Frame = -3

Query: 1604 DDVLVFFKGSLAAASSLKQAMENFNNISGLEMNKQKTALFSSSVDS 1467
            DD++V   G + +   + +  + F   SGL ++ +K+ ++ + + +
Sbjct: 705  DDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSA 750



 Score = 92.4 bits (228), Expect = 8e-16
 Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 4/204 (1%)
 Frame = -1

Query: 2221 KERFMNLSASVVEAKEVMVSAQAVVQLHPLNADVAASEKRDVSHYAKLARHEELMLKQKS 2042
            ++R  NLS    EA +++ + Q V   +P ++     E    S + ++A  EE  LKQKS
Sbjct: 303  RDRLGNLSKKANEAYKILCAKQHVNLTNP-SSMAMEEENAAYSRWDRVAILEEKYLKQKS 361

Query: 2041 RVQWMDLGDSNSHFFHCSLKERRCRNNMLSLTNVNGNILDEDKEIALECTNFFSNLFKGX 1862
            ++ W  +GD N+  FH +   R   N +  + + +G +  +  EI  E   FF    +  
Sbjct: 362  KLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAERFFREFLQLI 421

Query: 1861 XXXXXXXXXIEALTFNKVIGVEAAD----KLSAPISRDEIIYALSCIGSIKAPSPDGFTS 1694
                      E     +++ V  +D     L  P++ +EI   L  + S K+P PDG+TS
Sbjct: 422  PNDFEGVTITE---LQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTS 478

Query: 1693 HFFKYCWSVVETDFINAVQNFFMK 1622
             FFK  W ++  +F  AVQ+FF K
Sbjct: 479  EFFKATWEIIGDEFTLAVQSFFTK 502


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  251 bits (642), Expect(2) = 4e-68
 Identities = 137/411 (33%), Positives = 209/411 (50%), Gaps = 4/411 (0%)
 Frame = -1

Query: 1414 LPVRYLGVPLLSSRLSYQDCLPLISRVSKRTKSWKAKKLSYAGRLLLIKVVLTGMIFFWL 1235
            LPVRYLG+PL++ RL+ +D  PL  ++  R  +W ++ LS+AGRL LI  VL   + FW+
Sbjct: 172  LPVRYLGLPLVTKRLTKEDLSPLFEQIRNRIGTWTSRYLSFAGRLNLISSVLWSTMNFWM 231

Query: 1234 SCFILPKRAIKELNSICKKFLWSGPDLGTKHHPISWDVVSRPYSEGGLGIRNLEITNATS 1055
            S F LP   +KE+NSIC  FLWSGP+L  +   +SWD + +P  EGGLG+R+L   N  S
Sbjct: 232  SAFRLPSACLKEINSICSAFLWSGPELHRRKAKVSWDDICKPKQEGGLGLRSLTEANVVS 291

Query: 1054 NLRHLWNLVSGKVTIWTDWIRNNLIKDNDFWTLKVHQD-SSWCWRRILEQRDVAKDLFLH 878
             L+ +W + S   ++W  W + NL+K   FW+L  +    SW W+++L+ R+ AK     
Sbjct: 292  VLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSLTPNSSLGSWMWKKMLKYRETAKPFSRV 351

Query: 877  IIGDGEQTNFLSDLWHPNGRLCNWLSNDIIEDLCGGRDCKVSEFLDGEGWYFPDCMDEDS 698
             + +G +T+F  D W   G L +        DL   R+  V+E               + 
Sbjct: 352  EVNNGARTSFWFDNWSGMGHLMDVTGQRGQIDLGISRNKTVAEAWSNRRRRKHRTEQLND 411

Query: 697  NLSIMKLQEVEFDMSCSDLIIWKPSP---KGVYTMKETYNSLRGDYENVQWGSLVWFQHH 527
              + +  +    ++   D  +W+      K  ++ K+T+N +R     V W   VWF H 
Sbjct: 412  IEAALNQKYQTRNLLREDATLWRGKGDVFKTSFSTKDTWNQVRKKSNEVAWYKGVWFSHS 471

Query: 526  IPRHSFITWLGLHGRLKTREKMVKWGLMQNAPCVLCDDGSENEDHIFHSCSFASDIWRGL 347
             P++ F TWL L  RL T  +M  W    +  C  C    E  DH+F SCS+AS IW   
Sbjct: 472  TPKYQFCTWLALRNRLSTGYRMQLWNNGSDVKCTFCSTSIETRDHLFFSCSYASAIWTA- 530

Query: 346  LIKMGYSRNLCSTWRDEITWCITTFVGHGLISGIKKLIFNSFVYHVWRERN 194
            + K        + W+  + +   T     + S + + IF   V+ VW+ERN
Sbjct: 531  IAKNVLQHRFSTDWQTIVNYISETQTDR-IRSFLSRYIFQLTVHTVWKERN 580



 Score = 36.2 bits (82), Expect(2) = 4e-68
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = -3

Query: 1664 RNGFHQCCSEFFHEVQALGRDDVLVFFKGSLAAASSLKQAMENFNNISGLEMNKQKTALF 1485
            R GFH  C            DD+++   G + +   + + M  F   SGL++N +KT L+
Sbjct: 91   RFGFHPKCKNL-GLTHLCFADDLMILTDGKVRSVDGIVEVMNLFAKRSGLQINMEKTTLY 149

Query: 1484 SSSVDSQTLTWIIS 1443
            ++ V       +IS
Sbjct: 150  TAGVSDHNRYMMIS 163


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  261 bits (666), Expect(2) = 1e-67
 Identities = 139/419 (33%), Positives = 215/419 (51%), Gaps = 12/419 (2%)
 Frame = -1

Query: 1414 LPVRYLGVPLLSSRLSYQDCLPLISRVSKRTKSWKAKKLSYAGRLLLIKVVLTGMIFFWL 1235
            LPVRYLG+PL++ RL+  D  PLI ++ +R   W ++ LS+AGRL LI  VL  +  FW+
Sbjct: 488  LPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWM 547

Query: 1234 SCFILPKRAIKELNSICKKFLWSGPDLGTKHHPISWDVVSRPYSEGGLGIRNLEITNATS 1055
            + F LP+  I E+N I    LWSGP+L  K   +SWD + +P  EGGLG+++L   N  S
Sbjct: 548  NAFRLPRECINEINRISSALLWSGPELNPKKAKVSWDEICKPKKEGGLGLQSLREANKVS 607

Query: 1054 NLRHLWNLVSGKVTIWTDWIRNNLIKDNDFWTLKVHQD-SSWCWRRILEQRDVAKDLFLH 878
            +L+ +W L+S + ++W  W R NL+K   FW++  H    SW WRR+L+ R+VAK     
Sbjct: 608  SLKLIWRLLSCQDSLWVKWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKI 667

Query: 877  IIGDGEQTNFLSDLWHPNGRLCNWLSNDIIEDLCGGRDCKVSEFLD-GEGW-------YF 722
             + +G  T+F  D W   G L N      +    G  D  +S  +   E W       + 
Sbjct: 668  EVNNGVNTSFWFDNWSEKGPLIN------LTGARGAIDMGISRHMTLAEAWSRRRRKRHR 721

Query: 721  PDCMDEDSNLSIMKLQEVEFDMSCSDLIIWKPSP---KGVYTMKETYNSLRGDYENVQWG 551
             + ++E   + + K Q    ++   D I+W+      K  ++ K+T+N +R       W 
Sbjct: 722  VEILNEFEEILLQKYQHRNIEL--EDAILWRGKEDVFKARFSTKDTWNHIRTSSNQRAWH 779

Query: 550  SLVWFQHHIPRHSFITWLGLHGRLKTREKMVKWGLMQNAPCVLCDDGSENEDHIFHSCSF 371
              VWF H  P+ SF  WL +  RL T ++M+ W       CV C    E  DH+F  C +
Sbjct: 780  KGVWFAHATPKFSFCAWLAIRNRLSTGDRMMTWNNGTPTTCVFCSSPMETRDHLFFQCCY 839

Query: 370  ASDIWRGLLIKMGYSRNLCSTWRDEITWCITTFVGHGLISGIKKLIFNSFVYHVWRERN 194
            +S+IW   + K  Y     + W   + + I+      + S + +  F   ++ +WRERN
Sbjct: 840  SSEIWTS-IAKNVYKDRFSTKWSAVVNY-ISDSQPDRIQSFLSRYTFQVSIHSIWRERN 896



 Score = 25.4 bits (54), Expect(2) = 1e-67
 Identities = 10/48 (20%), Positives = 24/48 (50%)
 Frame = -3

Query: 1604 DDVLVFFKGSLAAASSLKQAMENFNNISGLEMNKQKTALFSSSVDSQT 1461
            DD+++   G + +   + + +  F    GL++  +KT L+ + V   +
Sbjct: 426  DDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICMEKTTLYLAGVSDHS 473



 Score = 60.5 bits (145), Expect = 3e-06
 Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
 Frame = -1

Query: 2026 DLGDSNSHFFHCSLKERRCRNNMLSLTNVNGNILDEDKEIALECTNFFSNLFKGXXXXXX 1847
            D+GD N+  FH ++  R   N++  +   +G ++   ++I  E  N+F +  +       
Sbjct: 88   DVGDRNNKTFHRAITTREAVNSIREIVTRDGLVVTSQQDIQTEAVNYFQDFLQTIPADYE 147

Query: 1846 XXXXIEALTFNKVIGVEAADKL-SAPISRDEIIYALSCIGSIKAPSPDGFTSHFFKYCWS 1670
                 E          E   +L +  ++ +EI   +  +   K+P PDG+TS F+K  W 
Sbjct: 148  GMCVEELENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWE 207

Query: 1669 VVETDFINAVQNFFMK 1622
            ++  + I A+Q+FF K
Sbjct: 208  IIGDEVIIAIQSFFAK 223


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  249 bits (637), Expect(2) = 3e-65
 Identities = 142/421 (33%), Positives = 220/421 (52%), Gaps = 13/421 (3%)
 Frame = -1

Query: 1417 SLPVRYLGVPLLSSRLSYQDCLPLISRVSKRTKSWKAKKLSYAGRLLLIKVVLTGMIFFW 1238
            +LPV+YLG+PLL+ R++  D LPL+ ++  R  SW  + LS+AGRL LIK VL+ +  FW
Sbjct: 913  TLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFW 972

Query: 1237 LSCFILPKRAIKELNSICKKFLWSGPDLGTKHHPISWDVVSRPYSEGGLGIRNLEITNAT 1058
            LS F LPK  ++E+  +   FLWSGPDL TK   I+W  V +   EGGLG++ L+  N  
Sbjct: 973  LSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEV 1032

Query: 1057 SNLRHLWNLVSGKVTIWTDWIRNNLIKDNDFWTLKVHQD-SSWCWRRILEQRDVAKDLFL 881
            S L+ +W ++S + ++W  W+  +LI+   FW++K +    SW WR+IL+QRD A+    
Sbjct: 1033 SLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHR 1092

Query: 880  HIIGDGEQTNFLSDLWHPNGRLCNWLSNDIIEDLCGGRDCKVSEFLD--GEGWYFPDCMD 707
              +  G  T+F  D W P GRL   + +    DL    +  V+E ++      +  D ++
Sbjct: 1093 MEVRSGTFTSFWHDHWCPLGRLHQHMGSRGTIDLGIPNNATVAEVMNTHRRKRHRADFLN 1152

Query: 706  EDSNLSIMKLQEVEFDMSCSDLIIWKPSP---KGVYTMKETYNSLRGDYENVQWGSLVWF 536
            +  +   +  Q+   D    D  +WK      K  ++  +T+  +R       W   VWF
Sbjct: 1153 QIKSQIELARQDRSTD---GDRSLWKQKEDTFKSSFSSSKTWQQIRSISLRCDWYRGVWF 1209

Query: 535  QHHIPRHSFITWLGLHGRLKTREKMVKWGLMQNAPCVLCDDGSENEDHIFHSCSFASDIW 356
                P++SF+TWL  H RL T +K+ KW       CV C +  E  DH+F SC ++S +W
Sbjct: 1210 SASTPKYSFVTWLAFHNRLTTSDKICKWNSGARYDCVFCGEELETRDHLFFSCPYSSHVW 1269

Query: 355  RGLLIKMGYSRNLCSTWRDEITWCITTFVGHGLISG-------IKKLIFNSFVYHVWRER 197
              L   +   RN+       + W + T   H L S          +  F + ++ +WRER
Sbjct: 1270 FSLTKGLLNGRNI-------LNWNLIT--PHLLDSSRPYLHVFTLRYAFQASIHSLWRER 1320

Query: 196  N 194
            N
Sbjct: 1321 N 1321



 Score = 28.5 bits (62), Expect(2) = 3e-65
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = -3

Query: 1604 DDVLVFFKGSLAAASSLKQAMENFNNISGLEMNKQKTALFSSSVDSQTLTWII 1446
            DD++VF  G+  +        E F  +S L+++ +K+ +F + +     T I+
Sbjct: 852  DDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSIL 904


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  250 bits (639), Expect(2) = 7e-65
 Identities = 140/448 (31%), Positives = 227/448 (50%), Gaps = 8/448 (1%)
 Frame = -1

Query: 1426 STSSLPVRYLGVPLLSSRLSYQDCLPLISRVSKRTKSWKAKKLSYAGRLLLIKVVLTGMI 1247
            +   LPVRYLG+PLL+ +++  D  PLI  V  +  SW A+ LSYAGRL L+  V+  + 
Sbjct: 1060 ANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIA 1119

Query: 1246 FFWLSCFILPKRAIKELNSICKKFLWSGPDLGTKHHPISWDVVSRPYSEGGLGIRNLEIT 1067
             FW+S + LP   I+E+  +C  FLWSGP L  K   I+W  + +P  EGGLGI++L   
Sbjct: 1120 NFWMSAYRLPAGCIREIEKLCSAFLWSGPVLNPKKAKIAWSSICQPKKEGGLGIKSLAEA 1179

Query: 1066 NATSNLRHLWNLVSGKVTIWTDWIRNNLIKDNDFWTLKVHQD-SSWCWRRILEQRDVAKD 890
            N  S L+ +W L+S + ++W  WI   +I+   FW+        SW W+++L+ R++AK 
Sbjct: 1180 NKVSCLKLIWRLLSTQPSLWVTWIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKS 1239

Query: 889  LFLHIIGDGEQTNFLSDLWHPNGRLCNWLSNDIIEDLCGGRDCKVSEFL-DGEGWYFPDC 713
            +    + +G  T+F  D W   GRL +      + DL    +  +   L   +       
Sbjct: 1240 MHKVEVRNGSSTSFWYDHWSHLGRLLDITGTRRVIDLGIPLETNLETVLRTHQHRQHRAA 1299

Query: 712  MDEDSNLSIMKLQEVEFDMSCSDLIIWKPSPKGV---YTMKETYNSLRGDYENVQWGSLV 542
            +    N  I +LQ+ E +    D+ +W+         +  K T+N++R       W   V
Sbjct: 1300 IYNRINAEIQRLQQQEREAG-PDISLWRSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGV 1358

Query: 541  WFQHHIPRHSFITWLGLHGRLKTREKMVKWGLMQNAPCVLCDDGSENEDHIFHSCSFASD 362
            WF +  P++SF+ WL +  RL T +++  W   Q   C LC++  E  DH+F SC + S 
Sbjct: 1359 WFPYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQLVTCTLCNNAEETRDHLFFSCQYTSY 1418

Query: 361  IWRGL---LIKMGYSRNLCSTWRDEITWCITTFVGHGLISGIKKLIFNSFVYHVWRERNX 191
            +W  L   L+   YSR+    W    T   T+ +    +  + + +F + +YH+WRERN 
Sbjct: 1419 VWEALTQRLLSTNYSRD----WNRLFTLLCTSNLPRDHLF-LFRYVFQASIYHIWRERNA 1473

Query: 190  XXXXXXXXSADQVGFIIIEDVRFKVLSI 107
                      +++  +I + VR ++ SI
Sbjct: 1474 RRHGEISSPTNRLIKLIDKTVRNRISSI 1501



 Score = 26.6 bits (57), Expect(2) = 7e-65
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = -3

Query: 1658 GFHQCCSEFFHEVQALGRDDVLVFFKGSLAAASSLKQAMENFNNISGLEMNKQKTALFSS 1479
            G+H  C E          DD++VF  G   +   +    + F   SGL+++ +K+ ++ +
Sbjct: 985  GYHPKC-EKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQISLEKSTIYLA 1043

Query: 1478 SVDS 1467
             V +
Sbjct: 1044 GVSA 1047



 Score =  100 bits (250), Expect = 2e-18
 Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 3/203 (1%)
 Frame = -1

Query: 2221 KERFMNLSASVVEAKEVMVSAQAVVQLHPLNADVAASEKRDVSHYAKLARHEELMLKQKS 2042
            KE+  +L     EA  ++   QA    +P + +  A E +  + +  L+  EE  LKQKS
Sbjct: 600  KEKLGDLPKRTREAHILLCEKQATTLANP-SQETIAEELKAYTDWTHLSELEEGFLKQKS 658

Query: 2041 RVQWMDLGDSNSHFFHCSLKERRCRNNMLSLTNVNGNILDEDKEIALECTNFFS---NLF 1871
            ++ WM++GD N+ +FH + + R+ RN++  +   N   L   +EI  E   FF+   N  
Sbjct: 659  KLHWMNVGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQTSEEIKGEAERFFNEFLNRQ 718

Query: 1870 KGXXXXXXXXXXIEALTFNKVIGVEAADKLSAPISRDEIIYALSCIGSIKAPSPDGFTSH 1691
             G             +++     V   + L+  ++ +EI   L  + + K+P PDG+TS 
Sbjct: 719  SGDFHGISVEDLRNLMSYR--CSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSE 776

Query: 1690 FFKYCWSVVETDFINAVQNFFMK 1622
            FFK  WS+   DFI A+Q+FF+K
Sbjct: 777  FFKATWSLTGPDFIAAIQSFFVK 799


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  239 bits (609), Expect(2) = 5e-64
 Identities = 128/413 (30%), Positives = 218/413 (52%), Gaps = 5/413 (1%)
 Frame = -1

Query: 1417 SLPVRYLGVPLLSSRLSYQDCLPLISRVSKRTKSWKAKKLSYAGRLLLIKVVLTGMIFFW 1238
            +LP+RYLG+PL++ +L   +  PL+ +++ R +SW  K LS+AGR+ LI  V+ G I FW
Sbjct: 759  TLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFW 818

Query: 1237 LSCFILPKRAIKELNSICKKFLWSGPDLGTKHHPISWDVVSRPYSEGGLGIRNLEITNAT 1058
            +S F+LPK  IK + S+C +FLWSG     K   +SW  +  P SEGGLG+R L   N T
Sbjct: 819  MSTFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNKT 878

Query: 1057 SNLRHLWNLVSGKVTIWTDWIRNNLIKDNDFWTLKVHQDSSWCWRRILEQRDVAKDLFLH 878
             ++R +W L   K ++W DW   + +    FW ++  Q  SW W+R+L  R +A    + 
Sbjct: 879  LSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAVEGGQSDSWTWKRLLSLRPLAHQFLVC 938

Query: 877  IIGDGEQTNFLSDLWHPNGRLCNWLSNDIIEDLCGGRDCKVSEFLDGEGWYFPDCMDEDS 698
             +G+G + ++  D W   G L   + +     L      KV+     +GW  P      +
Sbjct: 939  KVGNGLKADYWYDNWTSLGPLFRIIGDIGPSSLRVPLLAKVASAFSEDGWRLPVSRSAPA 998

Query: 697  NLSIMKLQEVEFDMSC-SDLIIWKPSPKGV----YTMKETYNSLRGDYENVQWGSLVWFQ 533
                  L  V    +   D+  ++ S  G     ++  +T+ ++R       W S +WF+
Sbjct: 999  KGIHDHLCTVPVPSTAQEDVDRYEWSVNGFLCQGFSAAKTWEAIRPKATVKSWASSIWFK 1058

Query: 532  HHIPRHSFITWLGLHGRLKTREKMVKWGLMQNAPCVLCDDGSENEDHIFHSCSFASDIWR 353
              +P+++F  W+    RL TR+++  WG +Q+  CVLC   SE+ DH+   C F++ +WR
Sbjct: 1059 GAVPKYAFNMWVSHLNRLLTRQRLASWGHIQSDACVLCSFASESRDHLLLICEFSAQVWR 1118

Query: 352  GLLIKMGYSRNLCSTWRDEITWCITTFVGHGLISGIKKLIFNSFVYHVWRERN 194
             +  ++   + L S+W + ++W   +      +  ++K++    VY++WR+RN
Sbjct: 1119 LVFRRICPRQRLFSSWSELLSWVRQSSPEAPPL--LRKIVSQVVVYNLWRQRN 1169



 Score = 35.4 bits (80), Expect(2) = 5e-64
 Identities = 14/45 (31%), Positives = 30/45 (66%)
 Frame = -3

Query: 1604 DDVLVFFKGSLAAASSLKQAMENFNNISGLEMNKQKTALFSSSVD 1470
            DDV++FF G   +   + + +++F + SGL++NK K+ L+ + ++
Sbjct: 699  DDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLN 743



 Score = 78.2 bits (191), Expect = 1e-11
 Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 2/203 (0%)
 Frame = -1

Query: 2212 FMNLSASVVEAKEVMVSAQ--AVVQLHPLNADVAASEKRDVSHYAKLARHEELMLKQKSR 2039
            +  L     EA + ++  Q   +    P+NA      +R    +  L   EE   +QKSR
Sbjct: 301  YSELEKRTKEAHDFLIGCQDRTLADPTPINASFELEAERK---WHILTAAEESFFRQKSR 357

Query: 2038 VQWMDLGDSNSHFFHCSLKERRCRNNMLSLTNVNGNILDEDKEIALECTNFFSNLFKGXX 1859
            + W   GD N+ +FH     R   N++ +L + NG ++D  + I   C ++F +L     
Sbjct: 358  ISWFAEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCASYFGSLLGDEV 417

Query: 1858 XXXXXXXXIEALTFNKVIGVEAADKLSAPISRDEIIYALSCIGSIKAPSPDGFTSHFFKY 1679
                       L  +         +L +  S ++I  AL  +   K+  PDGFT+ FF  
Sbjct: 418  DPYLMEQNDMNLLLSYRCSPAQVCELESTFSNEDIRAALFSLPRNKSCGPDGFTAEFFID 477

Query: 1678 CWSVVETDFINAVQNFFMKCKLL 1610
             WS+V  +  +A++ FF    LL
Sbjct: 478  SWSIVGAEVTDAIKEFFSSGCLL 500


>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
          Length = 478

 Score =  251 bits (641), Expect = 1e-63
 Identities = 146/460 (31%), Positives = 239/460 (51%), Gaps = 10/460 (2%)
 Frame = -1

Query: 1426 STSSLPVRYLGVPLLSSRLSYQDCLPLISRVSKRTKSWKAKKLSYAGRLLLIKVVLTGMI 1247
            ++ +LPVRYLG+PLL+ +++  D  PL+ ++  R   W A+ LS+AGRL LI  V+  + 
Sbjct: 19   ASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLT 78

Query: 1246 FFWLSCFILPKRAIKELNSICKKFLWSGPDLGTKHHPISWDVVSRPYSEGGLGIRNLEIT 1067
             FW+S F LP   IKE++SIC  FLWSGP+L TK   ++W  V  P  EGGLGIR+L+  
Sbjct: 79   NFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEA 138

Query: 1066 NATSNLRHLWNLVSGKVTIWTDWIRNNLIKDNDFWTLKVHQD-SSWCWRRILEQRDVAKD 890
            N  S L+ +W ++S   ++W  W+R  L++   FW++  +    SW W++IL+ R +A  
Sbjct: 139  NKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASG 197

Query: 889  LFLHIIGDGEQTNFLSDLWHPNGRLCNWLSNDIIEDLCGGRDCKVSEFLDGEGWYFPDCM 710
               H I +G  T+F  D W   GRL +   +    D+       V+E +     + P   
Sbjct: 198  FVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVN---HRPRRH 254

Query: 709  DEDSNLSIMK-LQEVEFD--MSCSDLIIWKPSP---KGVYTMKETYNSLRGDYENVQWGS 548
              D+ L I   + EV      S  D + WK +    K  +  KET+ + R     V W  
Sbjct: 255  RHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVNWYK 314

Query: 547  LVWFQHHIPRHSFITWLGLHGRLKTREKMVKWGLMQNAPCVLCDDGSENEDHIFHSCSFA 368
             VWF H  P++S + W+ +  RL T ++M+ W    ++ CVLC    E  DH+F +C ++
Sbjct: 315  GVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYS 374

Query: 367  SDIWRGLLIKMGYSRNLCSTWRDEITWCITTFVGHGLISGIKKLIFNSFVYHVWRERNXX 188
            +++W  L  K+  S++  + W   +       +GH  +  + +  F   ++ +W+ERN  
Sbjct: 375  AEVWSTLTRKL-LSQHFTNRWEAILKLLTNKSLGHE-VPFLTRYTFQLTLHSLWKERNGR 432

Query: 187  XXXXXXXSADQVGFIIIEDVRFKVLSIHCKVE---DNCFT 77
                   +A Q+   + + VR ++ SI  + +   + C T
Sbjct: 433  RHGEVPQAAAQMVRFLDKQVRNRISSIQSQEDRRYNGCMT 472


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  224 bits (570), Expect(2) = 2e-63
 Identities = 126/415 (30%), Positives = 200/415 (48%), Gaps = 7/415 (1%)
 Frame = -1

Query: 1417 SLPVRYLGVPLLSSRLSYQDCLPLISRVSKRTKSWKAKKLSYAGRLLLIKVVLTGMIFFW 1238
            + P RYLG+PLL  +L   D   LI +++ R   W  K LS+AGRL LI  V+   + FW
Sbjct: 758  TFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLISSVIYSTVNFW 817

Query: 1237 LSCFILPKRAIKELNSICKKFLWSGPDLGTKHHPISWDVVSRPYSEGGLGIRNLEITNAT 1058
            LS FILPK  +K +  +C +FLW           +SW     P +EGGLG+RN    N T
Sbjct: 818  LSSFILPKCCLKTIEQMCNRFLWGNDITRRGDIKVSWQNSCLPKAEGGLGLRNFWTWNKT 877

Query: 1057 SNLRHLWNLVSGKVTIWTDWIRNNLIKDNDFWTLKVHQDSSWCWRRILEQRDVAKDLFLH 878
             NLR +W L + + ++W  W   N ++  +FW  +     SW W+ IL  R +AK     
Sbjct: 878  LNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHHSWIWKAILGLRPLAKRFLRG 937

Query: 877  IIGDGEQTNFLSDLWHPNGRLCNWLSNDIIEDLCGGRDCKVSEFLDGEGWYFPDCMDEDS 698
             +G+G+  ++  D W   G L   +     +         V+E     GW  P     ++
Sbjct: 938  AVGNGQLLSYWYDHWSNLGPLIEAIGASGPQLTGIHESAVVTEASSSTGWILPSARTRNA 997

Query: 697  NLSIMKLQEVEFDMSC----SDLIIW--KPSPKGVYTMKETYNSLRGDYENVQWGSLVWF 536
            +L+ ++   +           D   W  + S    ++ K T+  LR       W + VW+
Sbjct: 998  SLANLRSTLLNSPAPSGDRGEDTYTWYIEGSSSTSFSSKLTWECLRQRDTTKLWAAAVWY 1057

Query: 535  QHHIPRHSFITWLGLHGRLKTREKMVKWGLMQNAPCVLCDDGSENEDHIFHSCSFASDIW 356
            +  IP+++F  W+    RL  R +   W   + + C +C   +E  DH+F  C+  S IW
Sbjct: 1058 KGCIPKYAFNFWVAHLNRLPVRARTTHWSTNRPSLCCVCQRETETRDHLFIHCTLGSLIW 1117

Query: 355  RGLLIKMGYSRNLCSTWRDEITWCITTFVGHGLISG-IKKLIFNSFVYHVWRERN 194
            + +L + G S+ +   W+D I W ++     G  SG +KKL   + ++H+W+ERN
Sbjct: 1118 QQVLARFGRSQ-MFREWKDIIEWMLS---NQGSFSGTLKKLAVQTAIFHIWKERN 1168



 Score = 48.1 bits (113), Expect(2) = 2e-63
 Identities = 21/63 (33%), Positives = 40/63 (63%)
 Frame = -3

Query: 1658 GFHQCCSEFFHEVQALGRDDVLVFFKGSLAAASSLKQAMENFNNISGLEMNKQKTALFSS 1479
            G+H   SE      A   DD+++F+ G  ++   +K  +E+F N+SGLEMN +K+A++++
Sbjct: 681  GYHPKASEVRISSLAFA-DDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTA 739

Query: 1478 SVD 1470
             ++
Sbjct: 740  GLE 742



 Score =  104 bits (259), Expect = 2e-19
 Identities = 67/207 (32%), Positives = 99/207 (47%), Gaps = 1/207 (0%)
 Frame = -1

Query: 2221 KERFMNLSASVVEAKEVMVSAQAVVQLHPLNADVAASEKRDVSHYAKLARHEELMLKQKS 2042
            +E +  L   VV+A + + + Q  +   P ++ +A  EK     +A+LA  EE  L QKS
Sbjct: 296  REHYSGLEKRVVQAAQNLKTCQNNLLAAP-SSYLAGLEKEAHRSWAELALAEERFLCQKS 354

Query: 2041 RVQWMDLGDSNSHFFHCSLKERRCRNNMLSLTNVNGNILDEDKEIALECTNFFSNLFKGX 1862
            RV W+  GDSN+ FFH  +  RR  N +  L +  G  ++   E+   C +FF  LF   
Sbjct: 355  RVLWLKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHCVDFFKELFGSS 414

Query: 1861 XXXXXXXXXIEALTFNKV-IGVEAADKLSAPISRDEIIYALSCIGSIKAPSPDGFTSHFF 1685
                      +  +  +          L A +S  +I      + S K+P PDG+TS FF
Sbjct: 415  SHLISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFF 474

Query: 1684 KYCWSVVETDFINAVQNFFMKCKLLGE 1604
            K  WS+V    I AVQ FF   +LLG+
Sbjct: 475  KKTWSIVGPSLIAAVQEFFRSGRLLGQ 501


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  233 bits (593), Expect(2) = 1e-60
 Identities = 125/354 (35%), Positives = 185/354 (52%), Gaps = 11/354 (3%)
 Frame = -1

Query: 1414 LPVRYLGVPLLSSRLSYQDCLPLISRVSKRTKSWKAKKLSYAGRLLLIKVVLTGMIFFWL 1235
            LP+RYLG+PL++ RLS  D  PLI ++ KR  SW ++ LS+AGR  LI  ++     FWL
Sbjct: 320  LPIRYLGLPLVTKRLSSVDYAPLIEQIRKRIGSWSSRFLSFAGRFNLISSIIWSSCNFWL 379

Query: 1234 SCFILPKRAIKELNSICKKFLWSGPDLGTKHHPISWDVVSRPYSEGGLGIRNLEITNATS 1055
            S F LP+  I+E+  +C  FLWSG +L +K   ISW+ V +P SEGGLG+R+L+  N   
Sbjct: 380  SAFQLPRACIQEIEKLCSSFLWSGTNLNSKKAKISWNQVCKPKSEGGLGLRSLKEANDVC 439

Query: 1054 NLRHLWNLVSGKVTIWTDWIRNNLIKDNDFWTLKVHQD-SSWCWRRILEQRDVAKDLFLH 878
             L+ +W ++S   ++W  W+ +NL+K   FW +K + +  SW W++IL+ R VAK     
Sbjct: 440  CLKLVWRIISHGDSLWVKWVEHNLLKREIFWIVKENANLGSWIWKKILKYRGVAKRFCKA 499

Query: 877  IIGDGEQTNFLSDLWHPNGRLCNWLSNDIIEDLCGGRDCKVSEFLDGEGWYFPDCMDEDS 698
             +G+GE T+F  D W   GRL +      +  + G  D  +S  +     +         
Sbjct: 500  EVGNGESTSFWFDDWSLLGRLID------VAGIRGTIDMGISRTMSVADAWTSRRRRHHR 553

Query: 697  NLSIMKLQEV-------EFDMSCSDLIIWKPSP---KGVYTMKETYNSLRGDYENVQWGS 548
               +  ++EV                ++WK      K  ++ K T+N LR     V W  
Sbjct: 554  QEILNTIEEVLSTQHQKRTQQQQQGRVLWKGKNDIYKDKFSTKNTWNYLRTTSNEVAWHK 613

Query: 547  LVWFQHHIPRHSFITWLGLHGRLKTREKMVKWGLMQNAPCVLCDDGSENEDHIF 386
             VWF H  P++SF  WL  H RL T  +M+KW   +   C  C  G E  DH+F
Sbjct: 614  GVWFPHATPKYSFCLWLAAHDRLATGARMIKWNRGETGDCTFCRQGIETRDHLF 667



 Score = 30.0 bits (66), Expect(2) = 1e-60
 Identities = 15/66 (22%), Positives = 33/66 (50%)
 Frame = -3

Query: 1664 RNGFHQCCSEFFHEVQALGRDDVLVFFKGSLAAASSLKQAMENFNNISGLEMNKQKTALF 1485
            R G+H  C        +   DD+++   G   +   + +  + F+  SGL+++ +K+ +F
Sbjct: 239  RIGYHPHCKRMGLTHLSFA-DDLMILTDGQCRSIEGIIEVFDLFSKWSGLKISMEKSTIF 297

Query: 1484 SSSVDS 1467
            S+ + S
Sbjct: 298  SAGLSS 303


>gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]
          Length = 438

 Score =  241 bits (614), Expect = 1e-60
 Identities = 133/416 (31%), Positives = 213/416 (51%), Gaps = 10/416 (2%)
 Frame = -1

Query: 1420 SSLPVRYLGVPLLSSRLSYQDCLPLISRVSKRTKSWKAKKLSYAGRLLLIKVVLTGMIFF 1241
            ++LP+RYLG+PL+S +L   +  PL+ ++  +   W  K LS+AGRL L+  V++G++ F
Sbjct: 29   ANLPIRYLGLPLMSRKLKISEFEPLVVKIKAKLNFWAVKSLSFAGRLQLLSSVISGIVVF 88

Query: 1240 WLSCFILPKRAIKELNSICKKFLWSGPDLGTKHH---PISWDVVSRPYSEGGLGIRNLEI 1070
            W+S F LPK  I+E+ S+C +FLWSG   GT  H    +SW  V  P +EGGLG+R    
Sbjct: 89   WMSTFRLPKGCIREIESMCARFLWSG---GTDEHHKAKVSWSTVCLPKAEGGLGVRKFTE 145

Query: 1069 TNATSNLRHLWNLVSGKVTIWTDW--IRNNLIKDNDFWTLKVHQDSSWCWRRILEQRDVA 896
             N   NL+ +W L S   ++W  W    N     ++FW +K     SW WR +L  R +A
Sbjct: 146  WNTALNLKLIWLLFSNSGSLWVAWHLFHNLSTSVSNFWLIKEGTTDSWNWRCLLRLRPLA 205

Query: 895  KDLFLHIIGDGEQTNFLSDLWHPNGRLCNWLSNDIIEDLCGGRDCKVSEFLDGEGWYFPD 716
                   IG+G   +F +D W P G L  ++ +D   +       KV++ ++G  W  P 
Sbjct: 206  SKFLFCSIGNGLTASFWADSWTPFGPLLTFIGSDGPRNQRIPLCSKVADVVNGNRWLLPS 265

Query: 715  CMDEDS-NL-SIMKLQEVEFDMSCSDLIIWKP---SPKGVYTMKETYNSLRGDYENVQWG 551
                ++ NL + +    +       D  +WK    S  G ++   T+N+LR       W 
Sbjct: 266  PRSSNALNLHAFLTTLSIPLQPLVEDSYLWKVENCSDIG-FSSAHTWNALRHKEVEKPWV 324

Query: 550  SLVWFQHHIPRHSFITWLGLHGRLKTREKMVKWGLMQNAPCVLCDDGSENEDHIFHSCSF 371
            S VWF+   P+++F  W+    RL+T+ +M+ WG + +  C LC  G E  DH+  SC F
Sbjct: 325  SSVWFKGVTPKNAFNMWITHQDRLRTKLRMIAWGFLVSPVCALCQVGFETRDHLMLSCDF 384

Query: 370  ASDIWRGLLIKMGYSRNLCSTWRDEITWCITTFVGHGLISGIKKLIFNSFVYHVWR 203
            +  +W  +  ++G    +   W + I W  T        S ++KL+  + VY +W+
Sbjct: 385  SVSVWALVRQRIGTPLTIFQNWSELILW--TQNRSKAAPSTLRKLVAQAVVYALWK 438


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  224 bits (571), Expect(2) = 2e-60
 Identities = 119/357 (33%), Positives = 189/357 (52%), Gaps = 6/357 (1%)
 Frame = -1

Query: 1417 SLPVRYLGVPLLSSRLSYQDCLPLISRVSKRTKSWKAKKLSYAGRLLLIKVVLTGMIFFW 1238
            SLPVRYLG+PL+S +L+  +  PLI +++ R  SW  + LS+AGR+ L+  V++G++ FW
Sbjct: 656  SLPVRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLASVISGIVNFW 715

Query: 1237 LSCFILPKRAIKELNSICKKFLWSGPDLGTKHHPISWDVVSRPYSEGGLGIRNLEITNAT 1058
            +S FILP   IK++ S+C +FLWS          ++W  V  P +EGG+G+R   ++N T
Sbjct: 716  ISSFILPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLRRFAVSNRT 775

Query: 1057 SNLRHLWNLVSGKVTIWTDWIR-NNLIKDNDFWTLKVHQDSSWCWRRILEQRDVAKDLFL 881
              LR +W L S   ++W  W + ++L K   FW        SW W+ +L  R VA+    
Sbjct: 776  LYLRMIWLLFSNSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLRVVAERFIR 835

Query: 880  HIIGDGEQTNFLSDLWHPNGRLCNWLSNDIIEDLCGGRDCKVSEFLDGEGWYFPD----- 716
              +G+G   +F  D W P G L  +L N+   DL    + K+S+    EGW   D     
Sbjct: 836  CNVGNGRDASFWFDNWTPFGPLIKFLGNEGPRDLRVHLNAKISDVCTSEGWSIADPRSDQ 895

Query: 715  CMDEDSNLSIMKLQEVEFDMSCSDLIIWKPSPKGVYTMKETYNSLRGDYENVQWGSLVWF 536
             +   ++L+ + +     D+   D ++     +G ++   T+++LR     V W   VWF
Sbjct: 896  ALSLHTHLTNISMPSDAQDLDSYDWVVDNKVCQG-FSAAATWSALRPSSAPVPWARAVWF 954

Query: 535  QHHIPRHSFITWLGLHGRLKTREKMVKWGLMQNAPCVLCDDGSENEDHIFHSCSFAS 365
            +   P+H+F  W     RL T+ ++  WG+  +  C LC    E  DH+F SC FA+
Sbjct: 955  KGATPKHAFHLWTAHLDRLPTKVRLASWGMQIDTTCGLCSLHPETRDHLFLSCDFAN 1011



 Score = 37.7 bits (86), Expect(2) = 2e-60
 Identities = 16/44 (36%), Positives = 28/44 (63%)
 Frame = -3

Query: 1604 DDVLVFFKGSLAAASSLKQAMENFNNISGLEMNKQKTALFSSSV 1473
            DDV++FF G  ++   + +++E+F   SGL MN  KT L+ + +
Sbjct: 596  DDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGL 639



 Score = 78.2 bits (191), Expect = 1e-11
 Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 1/205 (0%)
 Frame = -1

Query: 2221 KERFMNLSASVVEAKEVMVSAQAVVQLHPLNADVAASEKRDVSHYAKLARHEELMLKQKS 2042
            ++ + ++     EA + ++ AQ+V+   P  ++ AA E      +  LA  E     Q+S
Sbjct: 195  RDNYSDIEKRTKEAHDALLLAQSVLLASPCPSN-AAIEAETQRKWRILAEAEASFFYQRS 253

Query: 2041 RVQWMDLGDSNSHFFHCSLKERRCRNNMLSLTNVNGNILDEDKEIALECTNFF-SNLFKG 1865
            RV W+  GD NS +FH     R+  N++  L++  G+ ++  + +   C  +F SNL   
Sbjct: 254  RVNWLREGDMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQNLENHCVEYFQSNLGSE 313

Query: 1864 XXXXXXXXXXIEALTFNKVIGVEAADKLSAPISRDEIIYALSCIGSIKAPSPDGFTSHFF 1685
                      I  L   +    +    L  P S ++I  A   +   KA  PDGF+  FF
Sbjct: 314  QGLPLFEQADISNLLSYRCSPAQQVS-LDTPFSSEQIKNAFFSLPRNKASGPDGFSPEFF 372

Query: 1684 KYCWSVVETDFINAVQNFFMKCKLL 1610
              CW ++  +   A+  FF   KLL
Sbjct: 373  CACWPIIGGEVTEAIHEFFTSGKLL 397


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
            subsp. vesca]
          Length = 958

 Score =  227 bits (579), Expect(2) = 3e-60
 Identities = 140/440 (31%), Positives = 200/440 (45%), Gaps = 1/440 (0%)
 Frame = -1

Query: 1426 STSSLPVRYLGVPLLSSRLSYQDCLPLISRVSKRTKSWKAKKLSYAGRLLLIKVVLTGMI 1247
            S  + PVRYLG+PL++S+L  QDC PL+ R+  R KSW+ K LS+AGRL LI+ VL+ + 
Sbjct: 585  SLGTCPVRYLGIPLITSKLRMQDCSPLLDRIETRIKSWENKVLSFAGRLQLIQSVLSSIQ 644

Query: 1246 FFWLSCFILPKRAIKELNSICKKFLWSGPDLGTKHHPISWDVVSRPYSEGGLGIRNLEIT 1067
             +W S  ILPK+ +K++    + FLW+G   G     ++W  +  P  EGGLGI++L   
Sbjct: 645  VYWASHLILPKKVLKDIEKRLRCFLWAGNCSGRAATKVAWSEICLPKCEGGLGIKDLHCW 704

Query: 1066 NATSNLRHLWNLVSGKVTIWTDWIRNNLIKDNDFWTLKVHQDSSWCWRRILEQRDVAKDL 887
            N    + H+WNLVS     WTDW++  L+K N FW   +    SW WR++L+ R++    
Sbjct: 705  NKALMISHIWNLVSSSSNFWTDWVKVYLLKGNSFWNAPLPSICSWNWRKLLKIRELCCSF 764

Query: 886  FLHIIGDGEQTNFLSDLWHPNGRL-CNWLSNDIIEDLCGGRDCKVSEFLDGEGWYFPDCM 710
            F++IIGDG  T+   D WHP G L   W SN I E                         
Sbjct: 765  FVNIIGDGRATSLWFDNWHPLGPLTLRWSSNIIGES------------------------ 800

Query: 709  DEDSNLSIMKLQEVEFDMSCSDLIIWKPSPKGVYTMKETYNSLRGDYENVQWGSLVWFQH 530
                             +S S ++    +P G Y+    +N+LR     V W  LVWF  
Sbjct: 801  ----------------GLSKSAML----TPNGFYSTSSAWNTLRPSRFIVPWYRLVWFV- 839

Query: 529  HIPRHSFITWLGLHGRLKTREKMVKWGLMQNAPCVLCDDGSENEDHIFHSCSFASDIWRG 350
                                                    +E  +H+F  C+++  IW  
Sbjct: 840  ----------------------------------------AETHNHLFFDCAYSFGIWTH 859

Query: 349  LLIKMGYSRNLCSTWRDEITWCITTFVGHGLISGIKKLIFNSFVYHVWRERNXXXXXXXX 170
            +L K   S+ L   W D I W  T + G+ L   I KL   + VY +WRERN        
Sbjct: 860  VLSKCDVSKPLL-PWSDFIFWVATNWKGNSLPVVILKLALQAVVYAIWRERNNRRFRNES 918

Query: 169  XSADQVGFIIIEDVRFKVLS 110
                 V   I+E +R  +LS
Sbjct: 919  LPPAVVFKGIVESIRLCLLS 938



 Score = 34.3 bits (77), Expect(2) = 3e-60
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -3

Query: 1604 DDVLVFFKGSLAAASSLKQAMENFNNISGLEMNKQKTALFSSSVDSQT 1461
            DD+L+F  G   +  +L  A  NF ++S L+ N  ++ +F + VD  +
Sbjct: 527  DDLLMFCNGDENSVRTLHDAFSNFESLSSLKANVSESKIFLAGVDGNS 574


>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1| AT4g02490
            [Arabidopsis thaliana]
          Length = 657

 Score =  224 bits (571), Expect(2) = 7e-60
 Identities = 123/377 (32%), Positives = 191/377 (50%), Gaps = 8/377 (2%)
 Frame = -1

Query: 1435 LDCSTSSLPVRYLGVPLLSSRLSYQDCLPLISRVSKRTKSWKAKKLSYAGRLLLIKVVLT 1256
            L  S  SLPVRYLGVPL+S ++   D  PL+ R++ R  SW A+ LS+AGRL L+K V+ 
Sbjct: 301  LGVSQGSLPVRYLGVPLMSQKMKKHDYQPLVDRINSRFTSWTARHLSFAGRLQLLKSVIY 360

Query: 1255 GMIFFWLSCFILPKRAIKELNSICKKFLWSGPDLGTKHHPISWDVVSRPYSEGGLGIRNL 1076
              I FW S FILP + + +L  +C  FLWSG     +   ISWD+V      GGLG++ L
Sbjct: 361  STINFWASIFILPNQCLHKLEQMCNAFLWSGAPNSAREAKISWDIVCSSKESGGLGLKRL 420

Query: 1075 EITNATSNLRHLWNLVSGKVTIWTDWIRNNLIKDNDFWTLKVHQDSSWCWRRILEQRDVA 896
               N    L+ +W L +   ++W  W+R                   W WR++ + R+VA
Sbjct: 421  SSWNKVLALKLIWLLFTASGSLWVSWVR-------------------WVWRKLCKLREVA 461

Query: 895  KDLFLHIIGDGEQTNFLSDLWHPNGRLCNWLSNDIIEDLCG-GRDCKVSEFLDGEGWYFP 719
            +   +  +G G    F  D W  +G L + L+      L G      V + +  + W+  
Sbjct: 462  RPFVICEVGSGITARFWQDNWTGHGPLIH-LTGLTGPQLVGLSITSVVRDAIRNDDWWIA 520

Query: 718  DCMDEDSNLSIMK--LQEVEFDMSC--SDLIIWKPS---PKGVYTMKETYNSLRGDYENV 560
                 +  + ++K  L  V   + C   D  +WK     P   ++  +T+ +L+    +V
Sbjct: 521  SSRSRNPVILLLKSLLPPVGNLVDCEHDDSYLWKVGDRVPSSKFSTADTWRALQPFSVSV 580

Query: 559  QWGSLVWFQHHIPRHSFITWLGLHGRLKTREKMVKWGLMQNAPCVLCDDGSENEDHIFHS 380
             W   VWF + +P+H+FI+W+    RL TR+++  WGL+  A CVLC+   E  DH+F +
Sbjct: 581  SWHKAVWFTNQVPKHAFISWVTAWNRLHTRDRLRSWGLIVPAECVLCNLVDETRDHLFFA 640

Query: 379  CSFASDIWRGLLIKMGY 329
            C F+S IW   +  +G+
Sbjct: 641  CRFSSRIWTFFMRAVGF 657



 Score = 36.2 bits (82), Expect(2) = 7e-60
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = -3

Query: 1604 DDVLVFFKGSLAAASSLKQAMENFNNISGLEMNKQKTAL 1488
            DD+LVF  GSL++  ++   ++ F   SGL +N QKTAL
Sbjct: 246  DDILVFCDGSLSSLVAILDILDVFKKGSGLGINLQKTAL 284


>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score =  231 bits (590), Expect = 8e-58
 Identities = 124/357 (34%), Positives = 194/357 (54%), Gaps = 9/357 (2%)
 Frame = -1

Query: 1426 STSSLPVRYLGVPLLSSRLSYQDCLPLISRVSKRTKSWKAKKLSYAGRLLLIKVVLTGMI 1247
            +  +LPVRYLG+PL++ + S  D LPLI  + ++  SW A+ LSY GRL LI  +L  + 
Sbjct: 93   AVGTLPVRYLGLPLVTKQFSSTDYLPLIDHIKQKICSWSARFLSYTGRLNLISSILWSIC 152

Query: 1246 FFWLSCFILPKRAIKELNSICKKFLWSGPDLGTKHHPISWDVVSRPYSEGGLGIRNLEIT 1067
             FW+  F LP+  I+E++ +C  +LWSG +L T    I+W  V +P  EGGLG+R+L+  
Sbjct: 153  NFWMGAFRLPRDCIREIDKMCSAYLWSGGELNTSKAKIAWAFVCKPKEEGGLGLRSLKEA 212

Query: 1066 NATSNLRHLWNLVSGKVTIWTDWIRNNLIKDNDFWTLKVHQD-SSWCWRRILEQRDVAKD 890
            N    L+ +W ++S   ++W  WI+++L+K   FW ++ +    SW WR+IL+ RD+A+ 
Sbjct: 213  NDVCCLKLIWRIISHADSLWVKWIQSSLLKKVFFWAVRENTSLGSWMWRKILKFRDIART 272

Query: 889  LFLHIIGDGEQTNFLSDLWHPNGRLCNWLSNDIIEDLCGGRDCKVSEFLDG-----EGWY 725
            L    I +G QT+F  D W   GRL     +    DL   +   V E             
Sbjct: 273  LCKVEINNGAQTSFWYDDWSDLGRLIESAGDRGAIDLGINKHATVVEAWGNRRRRRHRAN 332

Query: 724  FPDCMDEDSNLSIMKLQEVEFDMSCSDLIIWKPSP---KGVYTMKETYNSLRGDYENVQW 554
            F + ++E   LS     + E      D  +WK      + +++ K+T+N +R     V W
Sbjct: 333  FLNRVEERLVLSWNSRNQAE------DCALWKGKENRFRSIFSTKDTWNHIRTVSNKVAW 386

Query: 553  GSLVWFQHHIPRHSFITWLGLHGRLKTREKMVKWGLMQNAPCVLCDDGSENEDHIFH 383
               VWF   IP+H+F  WL +H RL T ++M  W +  +A C+LC++  E+ DH+ H
Sbjct: 387  YKGVWFAQAIPKHAFCMWLAVHNRLSTGDRMTLWNMGVDATCILCNNALESRDHLQH 443


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score =  230 bits (587), Expect = 2e-57
 Identities = 128/406 (31%), Positives = 205/406 (50%), Gaps = 13/406 (3%)
 Frame = -1

Query: 1372 LSYQDCLPLISRVSKRTKSWKAKKLSYAGRLLLIKVVLTGMIFFWLSCFILPKRAIKELN 1193
            ++  D +PLI R+ +R   W A+ LS+AGRL LI  V+  +  FW+S F LP   IKE++
Sbjct: 1    MTTSDYIPLIERIRERISCWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPNACIKEID 60

Query: 1192 SICKKFLWSGPDLGTKHHPISWDVVSRPYSEGGLGIRNLEITNATSNLRHLWNLVSGKVT 1013
             +C  FLWSGP+L  K   +SW+ V  P  EGGLG+R+L   N    L+ +W L+S   +
Sbjct: 61   GLCSAFLWSGPELNRKKAKVSWNDVCMPKEEGGLGLRSLTEANKVCCLKLIWRLLSSS-S 119

Query: 1012 IWTDWIRNNLIKDNDFWTLKVHQD-SSWCWRRILEQRDVAKDLFLHIIGDGEQTNFLSDL 836
            +W  W+R  +I+   FW+L+      SW WR++L+ R +A     + I +G+  +F  D 
Sbjct: 120  LWVQWLRQYVIRKGSFWSLRDTSTLGSWMWRKLLKYRHLASGFTQYEIRNGKGVSFWHDN 179

Query: 835  WHPNGRLCNWLSNDIIEDLCGGRDCKVSEFLD-----GEGWYFPDCMDEDSNLSIMKLQE 671
            W P G L           + G R C +   +D      E            +L+ M+ Q 
Sbjct: 180  WSPLGPLIA---------ISGTRGC-IDMGIDIHATVAEALTHRRRRHRADHLNQMEAQL 229

Query: 670  VEFD----MSCSDLIIWKPSP---KGVYTMKETYNSLRGDYENVQWGSLVWFQHHIPRHS 512
             E      +   D+++WK      K  ++ KET+   R      +W   +WF H  P++S
Sbjct: 230  EELRTKGLVETEDVVLWKGKGGRFKPSFSTKETWADTREQKPRNEWYQGIWFSHATPKYS 289

Query: 511  FITWLGLHGRLKTREKMVKWGLMQNAPCVLCDDGSENEDHIFHSCSFASDIWRGLLIKMG 332
            FITWL    RL T ++M+ W    N  CV C + +E  +H+F +C ++ ++W GL  K+ 
Sbjct: 290  FITWLATKNRLSTGDRMMSWNAGVNLSCVFCQEQTETRNHLFFTCRYSREVWSGLTSKL- 348

Query: 331  YSRNLCSTWRDEITWCITTFVGHGLISGIKKLIFNSFVYHVWRERN 194
             +R+  + W   +       +G+  +  + +  F   VY +W+ERN
Sbjct: 349  LTRHYSTDWTTILKLLTDKTLGNNRLF-LLRYAFQILVYSIWKERN 393


>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
            putative protein [Arabidopsis thaliana]
          Length = 473

 Score =  226 bits (575), Expect = 4e-56
 Identities = 128/384 (33%), Positives = 200/384 (52%), Gaps = 9/384 (2%)
 Frame = -1

Query: 1318 SWKAKKLSYAGRLLLIKVVLTGMIFFWLSCFILPKRAIKELNSICKKFLWSGPDLGTKHH 1139
            SW A+ LSYAGRL LI  VL  +  FW+  F LP+  I+E++ +C  +LWSG +L T   
Sbjct: 48   SWSARFLSYAGRLNLISSVLWSICNFWMGAFRLPRDCIREIDKMCSAYLWSGGELNTSKA 107

Query: 1138 PISWDVVSRPYSEGGLGIRNLEITNATSNLRHLWNLVSGKVTIWTDWIRNNLIKDNDFWT 959
             I+W  V +P  EGGLG+R+L+  N    L+ +W ++S   ++W  WI+++L+K   FW 
Sbjct: 108  KITWAFVCKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVSFWA 167

Query: 958  LKVHQD-SSWCWRRILEQRDVAKDLFLHIIGDGEQTNFLSDLWHPNGRLCNWLSNDIIED 782
            ++ +    SW WR+IL+ RD+A+ L    I +G +T+F  D W   GRL +   +    D
Sbjct: 168  VRENTSLGSWMWRKILKFRDIARTLCKVEINNGARTSFWYDDWSDLGRLIDSAGDRGAID 227

Query: 781  LCGGRDCKVSEFLDG-----EGWYFPDCMDEDSNLSIMKLQEVEFDMSCSDLIIWKPSP- 620
            L   +   V E             F + ++E   LS     + E      D  +WK    
Sbjct: 228  LGINKHATVVEAWGNRRRRRHRTNFLNRVEERLILSWNSRNQAE------DRALWKGKEN 281

Query: 619  --KGVYTMKETYNSLRGDYENVQWGSLVWFQHHIPRHSFITWLGLHGRLKTREKMVKWGL 446
              + +++ K+T+N +R     V W   VWF   IP+H+F  WL +H RL T ++M  W +
Sbjct: 282  RFRSIFSTKDTWNHIRTVSNKVAWYKGVWFAQAIPKHAFCMWLAVHNRLSTGDRMTLWNM 341

Query: 445  MQNAPCVLCDDGSENEDHIFHSCSFASDIWRGLLIKMGYSRNLCSTWRDEITWCITTFVG 266
              +A C+LC+   E+ DH+F SC FA++IW   L K  Y+    + W+  I      +  
Sbjct: 342  GVDATCILCNKALESRDHLFFSCPFATEIWEP-LAKTIYNTCFYTDWQTIINNVSRNWPD 400

Query: 265  HGLISGIKKLIFNSFVYHVWRERN 194
              +   + + I    +Y +WRERN
Sbjct: 401  R-IAGFLARCILQVTIYTLWRERN 423


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  204 bits (518), Expect(2) = 2e-51
 Identities = 110/335 (32%), Positives = 178/335 (53%), Gaps = 5/335 (1%)
 Frame = -1

Query: 1441 SCLDCSTSSLPVRYLGVPLLSSRLSYQDCLPLISRVSKRTKSWKAKKLSYAGRLLLIKVV 1262
            S    ++  LPVRYLG+PLL+ +++  D  PL+ +V  +  SW A+ LSYAGRL LI  V
Sbjct: 331  SAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALINSV 390

Query: 1261 LTGMIFFWLSCFILPKRAIKELNSICKKFLWSGPDLGTKHHPISWDVVSRPYSEGGLGIR 1082
            +  +  FW+S + LP   IKE+  +C  FLWSGP+L  K   I+W  + +   EGGLGI+
Sbjct: 391  IVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLGIK 450

Query: 1081 NLEITNATSNLRHLWNLVSGKVTIWTDWIRNNLIKDNDFWTLKVHQD-SSWCWRRILEQR 905
            +L   N  S L+ +W LVS + ++W +W+   +I+   FW+        SW W+++L+ R
Sbjct: 451  SLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLKYR 510

Query: 904  DVAKDLFLHIIGDGEQTNFLSDLWHPNGRLCNWLSNDIIEDLCGGRDCKVSEFLDGEGW- 728
            DVAK +    I  G  T+F  D W   G+L +  +     D+       V+  L      
Sbjct: 511  DVAKSMCKVEIKSGSSTSFWYDNWSQLGQLVDVTNARRTIDMGIPLAATVATVLASHRTK 570

Query: 727  YFPDCMDEDSNLSIMKLQEVEFDMSCSDLIIWKPSP---KGVYTMKETYNSLRGDYENVQ 557
            +    +       I  + + E      D+ +W+ S    +  +  K T++++R  + + Q
Sbjct: 571  HHRTAIYNKIEAEIQSILQRE-RSGAPDIFLWRSSGDNFRQSFITKVTWHNIRVIHTHRQ 629

Query: 556  WGSLVWFQHHIPRHSFITWLGLHGRLKTREKMVKW 452
            W   VWF ++ P++SF+ WL +H RL T +++ KW
Sbjct: 630  WYKGVWFSYNTPKYSFLLWLAIHDRLSTGDRIKKW 664



 Score = 28.5 bits (62), Expect(2) = 2e-51
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = -3

Query: 1658 GFHQCCSEFFHEVQALGRDDVLVFFKGSLAAASSLKQAMENFNNISGLEMNKQKTALFSS 1479
            G+H  C +          DD++VF  G   +   +    + F   SGL ++ +K+ L+ +
Sbjct: 261  GYHPKCKKL-SLTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTLYLA 319

Query: 1478 SVDSQTLTWIIS 1443
             V       I+S
Sbjct: 320  GVSELNRNNILS 331