BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver25_contig00004398
         (2167 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis v...   865   0.0  
ref|XP_006364175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisom...   835   0.0  
ref|XP_007020667.1| DNA topoisomerase I alpha isoform 4, partial...   835   0.0  
ref|XP_007020664.1| DNA topoisomerase I alpha isoform 1 [Theobro...   835   0.0  
ref|XP_002300344.1| DNA topoisomerase family protein [Populus tr...   826   0.0  
ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform ...   822   0.0  
dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]               822   0.0  
ref|XP_006452479.1| hypothetical protein CICLE_v10007398mg [Citr...   821   0.0  
emb|CBI28783.3| unnamed protein product [Vitis vinifera]              819   0.0  
ref|XP_004149585.1| PREDICTED: DNA topoisomerase 1-like [Cucumis...   818   0.0  
dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]       813   0.0  
dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]                 812   0.0  
dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]                811   0.0  
dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. g...   810   0.0  
dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata]             810   0.0  
ref|XP_002317355.1| DNA topoisomerase family protein [Populus tr...   810   0.0  
gb|AAD08711.1| topoisomerase I [Nicotiana tabacum] gi|14626487|g...   804   0.0  
ref|XP_002266885.1| PREDICTED: DNA topoisomerase 1 [Vitis vinife...   803   0.0  
ref|XP_006856202.1| hypothetical protein AMTR_s00059p00193620 [A...   801   0.0  
ref|XP_006452480.1| hypothetical protein CICLE_v10007398mg [Citr...   800   0.0  

>ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
          Length = 883

 Score =  865 bits (2234), Expect = 0.0
 Identities = 454/716 (63%), Positives = 514/716 (71%), Gaps = 3/716 (0%)
 Frame = +3

Query: 27   SEDSDDDKPLSARLLVSTSALQKSNSHNVAKVHSPHLPXXXXXXXXXXXXXRSVEDSEDE 206
            S+DS+D+ PL  +L + +     S+    +K  S                    +DSEDE
Sbjct: 114  SDDSEDEIPLLLKLQLKSRKGASSSKLLDSKGLSSPASSRPQSQKAKVNNKNLSDDSEDE 173

Query: 207  APLSSTIKMKSAGEPSVKKEI---EEKSLASKAKQNGSIKKETEQLNSPKLLNKRLLGDN 377
             PLSS  ++K+    S+ K     E+K L S  K NG  KK+ E++ SPK  NKR LG  
Sbjct: 174  IPLSSKFRLKTGMGASLDKLDNFDEKKPLTSTLKPNGISKKDDERVKSPKGQNKRPLGQA 233

Query: 378  STPTHSSAKKPKLXXXXXXXXXXXXXXXXXXXTEXXXXXXXXXXXXVPIAERLKKAAVSA 557
            +T  HSS+KKPKL                    +             P  +RLKK+  S 
Sbjct: 234  NTSHHSSSKKPKLLDGSVKGKVKQVSVKAEQKDDDDDDNDDDDEY-TPTVKRLKKSVSSD 292

Query: 558  GTSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQPSSGDGQKWTTLEHNGVIFP 737
                                                  + P+SG+GQKWTTLEHNGVIFP
Sbjct: 293  NKKASKTKVIPSSRKKATKKAKKSKKLAKSSKYSKSTKVPPNSGEGQKWTTLEHNGVIFP 352

Query: 738  PDYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKEKFVENFMNDWRGILGRNH 917
            P YKPHGVKMLYNG+PVDLTPEQEEVATMFAVMKDT+YATK +F+ENFMNDWR  LG+NH
Sbjct: 353  PPYKPHGVKMLYNGRPVDLTPEQEEVATMFAVMKDTDYATKPRFIENFMNDWRVRLGKNH 412

Query: 918  IIKKFELCDFTPIYDWHQAEKEKRKQMTAEEKRVAKEEKLKQEEKYMWAVVDGVKEKVGN 1097
            +IKKFELCDFTPIY+WH+ EKEK+KQMT EEK+  KEEKLKQE+KYMWAVVDGVKEKVGN
Sbjct: 413  VIKKFELCDFTPIYEWHEKEKEKKKQMTTEEKKALKEEKLKQEDKYMWAVVDGVKEKVGN 472

Query: 1098 FRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKGVPIPECPIPGQRWKEVKHDNTVT 1277
            FRVEPPGLFRGRGEHPKMGKLKKRI PSDITINIGK  P+PECPIPG+RWKEV+HDNTVT
Sbjct: 473  FRVEPPGLFRGRGEHPKMGKLKKRICPSDITINIGKEAPVPECPIPGERWKEVRHDNTVT 532

Query: 1278 WLAFWIDPINSKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIHDIRANYTKDFTNKDL 1457
            WLAFW DPIN KEFKYVFLAASSSLKGQSDKEKYEKARLLKDYI +IRA YTKDFTNKD 
Sbjct: 533  WLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRATYTKDFTNKDT 592

Query: 1458 GKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKLVPPNKLEFDFLGKDSIR 1637
             KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENV LVPPNKLEFDFLGKDSIR
Sbjct: 593  MKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVALVPPNKLEFDFLGKDSIR 652

Query: 1638 YLNTVDVELPVYKAIGQFKNGKNDGEDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASI 1817
            Y NTV+VELPVYKAIGQFK GK+ G+DLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASI
Sbjct: 653  YFNTVEVELPVYKAIGQFKTGKSGGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASI 712

Query: 1818 TLDDQLHKNTXXXXXXXXXXXYNLANKEVAIICNHQRTESKSHTAQMERLQGKILELKKE 1997
            TLD+ L++             Y  ANKEVAIICNHQR+ SKSH  QM RL  K+ EL+  
Sbjct: 713  TLDEMLNREARGGDAMEKIVIYQHANKEVAIICNHQRSVSKSHDVQMSRLSEKMRELQGV 772

Query: 1998 VDDLKTDLDRAKKGRPPLARFGPDGKQVEKRNLAPDAIQRKINKTYERIEKMERDI 2165
            +D+LKTDL RAKKG+PPL     DGK   K+N+ P+ ++RKI +T  +IEKMERD+
Sbjct: 773  LDELKTDLARAKKGKPPLK--DSDGK--PKKNMTPEVLERKIAQTNTKIEKMERDM 824


>ref|XP_006364175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 1-like [Solanum
            tuberosum]
          Length = 905

 Score =  835 bits (2156), Expect = 0.0
 Identities = 444/721 (61%), Positives = 515/721 (71%)
 Frame = +3

Query: 3    PPAKPNVDSEDSDDDKPLSARLLVSTSALQKSNSHNVAKVHSPHLPXXXXXXXXXXXXXR 182
            P ++PN ++EDS+DDKPLSAR+    S L KSNS     +H+ ++              +
Sbjct: 155  PKSEPNDEAEDSEDDKPLSARV---PSGLSKSNS-----IHANNVLGTSTSVQKSRPPKK 206

Query: 183  SVEDSEDEAPLSSTIKMKSAGEPSVKKEIEEKSLASKAKQNGSIKKETEQLNSPKLLNKR 362
              EDS+DE PL+S  +MKS+   S  K    + +  K +QNG        L S  +L+KR
Sbjct: 207  --EDSDDEIPLASRFQMKSSAGASTSKFSSSEEVKPKIRQNG--------LPSATVLSKR 256

Query: 363  LLGDNSTPTHSSAKKPKLXXXXXXXXXXXXXXXXXXXTEXXXXXXXXXXXXVPIAERLKK 542
              G+ S       K                       TE            VP+++R+KK
Sbjct: 257  PPGEVSLLLRLQLKSLDFLMHLHLFLVSNXSVKTEKKTEDDDDE-------VPLSQRIKK 309

Query: 543  AAVSAGTSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQPSSGDGQKWTTLEHN 722
            A  SA  S                                   LQPSSGDGQKWTTLEHN
Sbjct: 310  AVASASASASKVSSVKKATKVVSSSMKKTKKKLKKPKYSKSSKLQPSSGDGQKWTTLEHN 369

Query: 723  GVIFPPDYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKEKFVENFMNDWRGI 902
            GVIFPP YKPHGVKMLY G+PVDLTPEQEEVATM+AVM DTEY TK++F ENFMNDWR I
Sbjct: 370  GVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMYAVMLDTEYLTKQQFKENFMNDWRKI 429

Query: 903  LGRNHIIKKFELCDFTPIYDWHQAEKEKRKQMTAEEKRVAKEEKLKQEEKYMWAVVDGVK 1082
            LG+NH+I+K E C+FTPIY+WHQ+EKEK+KQM++EEK+  +EEKLKQEEKYMWA+VDGVK
Sbjct: 430  LGKNHVIQKLEECNFTPIYEWHQSEKEKKKQMSSEEKKALREEKLKQEEKYMWAIVDGVK 489

Query: 1083 EKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKGVPIPECPIPGQRWKEVKH 1262
            EKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRP+DITINIGKGVP+PECPIPGQRWKEV+H
Sbjct: 490  EKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPNDITINIGKGVPVPECPIPGQRWKEVRH 549

Query: 1263 DNTVTWLAFWIDPINSKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIHDIRANYTKDF 1442
            DNTVTWLAFW DPIN +EFKYVFLAASSSLKGQSDKEKYEKAR LKDYI  IR+ YTKDF
Sbjct: 550  DNTVTWLAFWNDPINPREFKYVFLAASSSLKGQSDKEKYEKARRLKDYIEGIRSAYTKDF 609

Query: 1443 TNKDLGKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKLVPPNKLEFDFLG 1622
            T+KD  KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENV+ VPPN L+FDFLG
Sbjct: 610  TSKDPVKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKFDFLG 669

Query: 1623 KDSIRYLNTVDVELPVYKAIGQFKNGKNDGEDLFDKLDTSKLNAHLKELMPGLTAKVFRT 1802
            KDSIRY N V V  PV+KAI QF++GK  G+DLFDKLDTSKLNAHLKELMPGLTAKVFRT
Sbjct: 670  KDSIRYQNEVAVYEPVFKAIQQFRSGKKGGDDLFDKLDTSKLNAHLKELMPGLTAKVFRT 729

Query: 1803 YNASITLDDQLHKNTXXXXXXXXXXXYNLANKEVAIICNHQRTESKSHTAQMERLQGKIL 1982
            YNAS TL+ QL K T           YN+ANKEVAIICNHQRT SKSH+ Q+ RL  KI 
Sbjct: 730  YNASFTLEQQLTKLTQGGELADKVAVYNVANKEVAIICNHQRTVSKSHSVQISRLNEKID 789

Query: 1983 ELKKEVDDLKTDLDRAKKGRPPLARFGPDGKQVEKRNLAPDAIQRKINKTYERIEKMERD 2162
            ELK  +++ K DL RAKKG+PP+   G DGK   KRNL P+A+Q+KI++T  +I+ +ER 
Sbjct: 790  ELKAILEEFKVDLARAKKGKPPVK--GADGK--AKRNLTPEALQKKIDQTNVKIDNIERQ 845

Query: 2163 I 2165
            I
Sbjct: 846  I 846


>ref|XP_007020667.1| DNA topoisomerase I alpha isoform 4, partial [Theobroma cacao]
            gi|508720295|gb|EOY12192.1| DNA topoisomerase I alpha
            isoform 4, partial [Theobroma cacao]
          Length = 733

 Score =  835 bits (2156), Expect = 0.0
 Identities = 450/723 (62%), Positives = 513/723 (70%), Gaps = 5/723 (0%)
 Frame = +3

Query: 12   KPNVDSEDSDDDKPLSARLLVSTSALQKSNSHNVAKVHSPHLPXXXXXXXXXXXXXRSVE 191
            +PN D +D DD  PLSARL        K  S+   K  S   P              S E
Sbjct: 17   EPNSDDDDDDDSLPLSARL--------KGISNQGNKGASTSAPAQSRRLVPKTEVKVSAE 68

Query: 192  DSEDEAPLSSTIKMKS-AGEPSVKKEI--EEKSLASKAKQNGSIKKETEQLNSPKLLNKR 362
            D +DEAPLS+   +KS  G  S +     E+K LASK +QNGSI K  +Q NS  L  KR
Sbjct: 69   DPDDEAPLSARFNVKSNTGTSSSRLHDCDEKKPLASKIQQNGSIMKGKQQ-NSSTLSGKR 127

Query: 363  LLGDNSTPTHSSAKKPKLXXXXXXXXXXXXXXXXXXXTEXXXXXXXXXXXXVPIAERLKK 542
             L   ++  HSSAKKPK                     E            +PIA+R+KK
Sbjct: 128  PLDKGNSSDHSSAKKPKTSDAPTTMKTKQVTVKAEKADEDDDH--------MPIAQRMKK 179

Query: 543  AAVS-AGTSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQPSSGDGQK-WTTLE 716
            +  S +  S                                   + PSSGDGQK W+TL 
Sbjct: 180  STASNSKLSSMKQKTTKVVSSSFKKINKKSKKEMKSSKYIKSTKVPPSSGDGQKKWSTLV 239

Query: 717  HNGVIFPPDYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKEKFVENFMNDWR 896
            HNGVIFP  Y PHGVKMLY+G+PVDLTPEQEEVATMFAVMKDT+Y +K +F +NF  DW 
Sbjct: 240  HNGVIFPSPYTPHGVKMLYDGRPVDLTPEQEEVATMFAVMKDTDYMSKTQFKKNFWEDWS 299

Query: 897  GILGRNHIIKKFELCDFTPIYDWHQAEKEKRKQMTAEEKRVAKEEKLKQEEKYMWAVVDG 1076
             +LG+NH IK  + CDFTPIY+WH  EKEK+KQM++EEK+  KEEKLKQEEK+MWA+VDG
Sbjct: 300  KLLGKNHTIKDLDRCDFTPIYEWHLQEKEKKKQMSSEEKKALKEEKLKQEEKFMWAIVDG 359

Query: 1077 VKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKGVPIPECPIPGQRWKEV 1256
            VKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRPSDITINIGK  PIPECPIPG+RWK++
Sbjct: 360  VKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAPIPECPIPGERWKDI 419

Query: 1257 KHDNTVTWLAFWIDPINSKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIHDIRANYTK 1436
            KHDNTVTWLAFW DPIN KEFKYVFLAASSSLKGQSDKEKYEKAR+LKDYI +IRA YTK
Sbjct: 420  KHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARMLKDYIKNIRAAYTK 479

Query: 1437 DFTNKDLGKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKLVPPNKLEFDF 1616
            DFT KD+ KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NV+ +PPNKL+FDF
Sbjct: 480  DFTTKDVMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDF 539

Query: 1617 LGKDSIRYLNTVDVELPVYKAIGQFKNGKNDGEDLFDKLDTSKLNAHLKELMPGLTAKVF 1796
            LGKDSI+Y+NTV+VELPVYKAIGQF+ GK+  +DLFDKLDTSKLNAHLKELMPGLTAKVF
Sbjct: 540  LGKDSIQYVNTVEVELPVYKAIGQFQTGKSKSDDLFDKLDTSKLNAHLKELMPGLTAKVF 599

Query: 1797 RTYNASITLDDQLHKNTXXXXXXXXXXXYNLANKEVAIICNHQRTESKSHTAQMERLQGK 1976
            RTYNASITLD+ L+K T           Y  ANKEVAIICNHQR+ SKSH+AQM RL  K
Sbjct: 600  RTYNASITLDEMLNKETKDGDVAEKVVVYQRANKEVAIICNHQRSISKSHSAQMSRLTEK 659

Query: 1977 ILELKKEVDDLKTDLDRAKKGRPPLARFGPDGKQVEKRNLAPDAIQRKINKTYERIEKME 2156
            I ELK  + +LK DLDRAKKG+PPL     DGKQ  KRNL P AIQ+KI++T  +IEKME
Sbjct: 660  ITELKGVLKELKIDLDRAKKGKPPLK--DADGKQ--KRNLTPQAIQKKIDQTNAKIEKME 715

Query: 2157 RDI 2165
            RD+
Sbjct: 716  RDM 718


>ref|XP_007020664.1| DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
            gi|590606147|ref|XP_007020665.1| DNA topoisomerase I
            alpha isoform 1 [Theobroma cacao]
            gi|508720292|gb|EOY12189.1| DNA topoisomerase I alpha
            isoform 1 [Theobroma cacao] gi|508720293|gb|EOY12190.1|
            DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
          Length = 904

 Score =  835 bits (2156), Expect = 0.0
 Identities = 450/723 (62%), Positives = 513/723 (70%), Gaps = 5/723 (0%)
 Frame = +3

Query: 12   KPNVDSEDSDDDKPLSARLLVSTSALQKSNSHNVAKVHSPHLPXXXXXXXXXXXXXRSVE 191
            +PN D +D DD  PLSARL        K  S+   K  S   P              S E
Sbjct: 144  EPNSDDDDDDDSLPLSARL--------KGISNQGNKGASTSAPAQSRRLVPKTEVKVSAE 195

Query: 192  DSEDEAPLSSTIKMKS-AGEPSVKKEI--EEKSLASKAKQNGSIKKETEQLNSPKLLNKR 362
            D +DEAPLS+   +KS  G  S +     E+K LASK +QNGSI K  +Q NS  L  KR
Sbjct: 196  DPDDEAPLSARFNVKSNTGTSSSRLHDCDEKKPLASKIQQNGSIMKGKQQ-NSSTLSGKR 254

Query: 363  LLGDNSTPTHSSAKKPKLXXXXXXXXXXXXXXXXXXXTEXXXXXXXXXXXXVPIAERLKK 542
             L   ++  HSSAKKPK                     E            +PIA+R+KK
Sbjct: 255  PLDKGNSSDHSSAKKPKTSDAPTTMKTKQVTVKAEKADEDDDH--------MPIAQRMKK 306

Query: 543  AAVS-AGTSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQPSSGDGQK-WTTLE 716
            +  S +  S                                   + PSSGDGQK W+TL 
Sbjct: 307  STASNSKLSSMKQKTTKVVSSSFKKINKKSKKEMKSSKYIKSTKVPPSSGDGQKKWSTLV 366

Query: 717  HNGVIFPPDYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKEKFVENFMNDWR 896
            HNGVIFP  Y PHGVKMLY+G+PVDLTPEQEEVATMFAVMKDT+Y +K +F +NF  DW 
Sbjct: 367  HNGVIFPSPYTPHGVKMLYDGRPVDLTPEQEEVATMFAVMKDTDYMSKTQFKKNFWEDWS 426

Query: 897  GILGRNHIIKKFELCDFTPIYDWHQAEKEKRKQMTAEEKRVAKEEKLKQEEKYMWAVVDG 1076
             +LG+NH IK  + CDFTPIY+WH  EKEK+KQM++EEK+  KEEKLKQEEK+MWA+VDG
Sbjct: 427  KLLGKNHTIKDLDRCDFTPIYEWHLQEKEKKKQMSSEEKKALKEEKLKQEEKFMWAIVDG 486

Query: 1077 VKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKGVPIPECPIPGQRWKEV 1256
            VKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRPSDITINIGK  PIPECPIPG+RWK++
Sbjct: 487  VKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDITINIGKDAPIPECPIPGERWKDI 546

Query: 1257 KHDNTVTWLAFWIDPINSKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIHDIRANYTK 1436
            KHDNTVTWLAFW DPIN KEFKYVFLAASSSLKGQSDKEKYEKAR+LKDYI +IRA YTK
Sbjct: 547  KHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARMLKDYIKNIRAAYTK 606

Query: 1437 DFTNKDLGKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKLVPPNKLEFDF 1616
            DFT KD+ KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NV+ +PPNKL+FDF
Sbjct: 607  DFTTKDVMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDF 666

Query: 1617 LGKDSIRYLNTVDVELPVYKAIGQFKNGKNDGEDLFDKLDTSKLNAHLKELMPGLTAKVF 1796
            LGKDSI+Y+NTV+VELPVYKAIGQF+ GK+  +DLFDKLDTSKLNAHLKELMPGLTAKVF
Sbjct: 667  LGKDSIQYVNTVEVELPVYKAIGQFQTGKSKSDDLFDKLDTSKLNAHLKELMPGLTAKVF 726

Query: 1797 RTYNASITLDDQLHKNTXXXXXXXXXXXYNLANKEVAIICNHQRTESKSHTAQMERLQGK 1976
            RTYNASITLD+ L+K T           Y  ANKEVAIICNHQR+ SKSH+AQM RL  K
Sbjct: 727  RTYNASITLDEMLNKETKDGDVAEKVVVYQRANKEVAIICNHQRSISKSHSAQMSRLTEK 786

Query: 1977 ILELKKEVDDLKTDLDRAKKGRPPLARFGPDGKQVEKRNLAPDAIQRKINKTYERIEKME 2156
            I ELK  + +LK DLDRAKKG+PPL     DGKQ  KRNL P AIQ+KI++T  +IEKME
Sbjct: 787  ITELKGVLKELKIDLDRAKKGKPPLK--DADGKQ--KRNLTPQAIQKKIDQTNAKIEKME 842

Query: 2157 RDI 2165
            RD+
Sbjct: 843  RDM 845


>ref|XP_002300344.1| DNA topoisomerase family protein [Populus trichocarpa]
            gi|222847602|gb|EEE85149.1| DNA topoisomerase family
            protein [Populus trichocarpa]
          Length = 877

 Score =  826 bits (2133), Expect = 0.0
 Identities = 445/721 (61%), Positives = 508/721 (70%), Gaps = 6/721 (0%)
 Frame = +3

Query: 12   KPNVDSEDSDDDKPLSARLLVSTSALQKSNSHNVAKVHSPHLPXXXXXXXXXXXXXRSVE 191
            K  VD EDS+DDKPLS+R+  ST+ + K  +   A  H    P                 
Sbjct: 129  KSIVDDEDSEDDKPLSSRIKGSTNNVNKGVT---APAHVKDEP----------------- 168

Query: 192  DSEDEAPLSSTIKMKSAGEPSVKKEI---EEKSLASKAKQNGSIKKETEQLNSPKLLNKR 362
              +DE PLSS   MKS    S  K I   E +   SK++ NGS K + +Q +S     + 
Sbjct: 169  SDDDEVPLSSRFAMKSNAGTSSSKSIRSSEIRPFPSKSQLNGSTKNDKQQKSSVVPTKRP 228

Query: 363  LLGDNSTPT-HSSAKKPKLXXXXXXXXXXXXXXXXXXXTEXXXXXXXXXXXXVPIAERLK 539
            +  DN  P+ HSSAKKPKL                    +            + I++R+K
Sbjct: 229  M--DNKVPSNHSSAKKPKLLDACTTTKVKQVTVKVEQKADDDDH--------LTISQRMK 278

Query: 540  KAAVSAGTSQ-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQPSSGDGQK-WTTL 713
            KA  SA  S                                    +QP S DGQK WTTL
Sbjct: 279  KADSSANKSSFAKKKVTKVVSSSLKKTTQKNKKQMKNSKYSKSTKVQPGSSDGQKKWTTL 338

Query: 714  EHNGVIFPPDYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKEKFVENFMNDW 893
             HNGVIFPP YKPHGVK+LY G+P+DLTPEQEEVATMFAVMKDT+Y  K +F +NF NDW
Sbjct: 339  VHNGVIFPPPYKPHGVKILYKGKPIDLTPEQEEVATMFAVMKDTDYVQKPQFRQNFWNDW 398

Query: 894  RGILGRNHIIKKFELCDFTPIYDWHQAEKEKRKQMTAEEKRVAKEEKLKQEEKYMWAVVD 1073
            R +LG+NH+I+K + CDF PIY+WHQ EKEK+KQM+ EEK+V KEEKLKQEEKYMWA+V+
Sbjct: 399  RKLLGKNHVIQKLDDCDFNPIYEWHQQEKEKKKQMSTEEKKVLKEEKLKQEEKYMWAIVN 458

Query: 1074 GVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKGVPIPECPIPGQRWKE 1253
            GVKEKVGNFRVEPPGLFRGRGEHPKMGKLK RIRPSDITINIGK  PIPECPIPG+RWKE
Sbjct: 459  GVKEKVGNFRVEPPGLFRGRGEHPKMGKLKSRIRPSDITINIGKDAPIPECPIPGERWKE 518

Query: 1254 VKHDNTVTWLAFWIDPINSKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIHDIRANYT 1433
            VKHDNTVTWLAFW DPIN KEFKYVFLAASSSLKGQSDKEKYEKAR LKDYIH+IRA YT
Sbjct: 519  VKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHNIRAAYT 578

Query: 1434 KDFTNKDLGKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKLVPPNKLEFD 1613
            KDF +KD+ KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NV+ +PPNKL+FD
Sbjct: 579  KDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVANVECIPPNKLKFD 638

Query: 1614 FLGKDSIRYLNTVDVELPVYKAIGQFKNGKNDGEDLFDKLDTSKLNAHLKELMPGLTAKV 1793
            FLGKDSIRY NTV+VELPVYKAIG F+  K   +DLFD LDTSKLNAHLKELMPGLTAKV
Sbjct: 639  FLGKDSIRYENTVEVELPVYKAIGHFQVAKKQTDDLFDSLDTSKLNAHLKELMPGLTAKV 698

Query: 1794 FRTYNASITLDDQLHKNTXXXXXXXXXXXYNLANKEVAIICNHQRTESKSHTAQMERLQG 1973
            FRTYNASITLD++L++ T           YN ANK+VAIICNHQRT SKSH AQM RL  
Sbjct: 699  FRTYNASITLDEKLYEETEDGDVAEKIVIYNQANKQVAIICNHQRTISKSHDAQMSRLTE 758

Query: 1974 KILELKKEVDDLKTDLDRAKKGRPPLARFGPDGKQVEKRNLAPDAIQRKINKTYERIEKM 2153
            KI ELK  + +LKTDLDRAKKG+PPL   G DGKQ  KR+L P+AI++KI  T ++IEKM
Sbjct: 759  KIEELKSTLKELKTDLDRAKKGKPPLK--GADGKQ--KRSLTPEAIEKKIATTNQKIEKM 814

Query: 2154 E 2156
            E
Sbjct: 815  E 815


>ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform X1 [Citrus sinensis]
            gi|568842074|ref|XP_006474978.1| PREDICTED: DNA
            topoisomerase 1-like isoform X2 [Citrus sinensis]
            gi|568842076|ref|XP_006474979.1| PREDICTED: DNA
            topoisomerase 1-like isoform X3 [Citrus sinensis]
            gi|568842078|ref|XP_006474980.1| PREDICTED: DNA
            topoisomerase 1-like isoform X4 [Citrus sinensis]
          Length = 902

 Score =  822 bits (2124), Expect = 0.0
 Identities = 444/718 (61%), Positives = 506/718 (70%), Gaps = 4/718 (0%)
 Frame = +3

Query: 24   DSEDSDDDKPLSARLLVSTSALQKSNSHNVAKVHSPHLPXXXXXXXXXXXXXRSVEDSED 203
            D  DS+DDKPLSARL        K NS NV +                       EDS+D
Sbjct: 149  DDNDSEDDKPLSARL--------KGNSKNVNQGIGAS---KADAAISEVNVKTDPEDSDD 197

Query: 204  EAPLSSTIKMKSAGEPSVKK--EIEEKSLASKAKQNGSIKKETEQLNSPKLLNKRLLGDN 377
            E PLSS     +AG    K     E+K LASK +QNGS  +ET+Q +S   + KR L   
Sbjct: 198  EVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPV-KRPLQKA 256

Query: 378  STPTHSSAKKPKLXXXXXXXXXXXXXXXXXXXTEXXXXXXXXXXXXVPIAERLKKAAVSA 557
            S+   SSAKKPK+                    +            +PI++R+K +A S 
Sbjct: 257  SSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDH--------IPISQRMKNSAPSV 308

Query: 558  GTSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LQPSSGDGQK-WTTLEHNGVI 731
              S                                    + P SGDGQK WTTL HNGVI
Sbjct: 309  KKSVTNTAKATKSVSSSSNKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVI 368

Query: 732  FPPDYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKEKFVENFMNDWRGILGR 911
            FPP Y PHGVKMLY G+ V+LTPEQEEVATMFAVM DT+Y  K KF ENF NDWR +LG+
Sbjct: 369  FPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGK 428

Query: 912  NHIIKKFELCDFTPIYDWHQAEKEKRKQMTAEEKRVAKEEKLKQEEKYMWAVVDGVKEKV 1091
            NH+I+  E CDF PIYDWHQ +KEK+KQM++EEK+  KEEKLKQEEKYMWA+VDGVKEKV
Sbjct: 429  NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKLKQEEKYMWAIVDGVKEKV 488

Query: 1092 GNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKGVPIPECPIPGQRWKEVKHDNT 1271
            GNFRVEPPGLFRGRGEHPKMGKLKKRI+PSDITINIGK VPIPECPIPG+ WKEVKHDNT
Sbjct: 489  GNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNT 548

Query: 1272 VTWLAFWIDPINSKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIHDIRANYTKDFTNK 1451
            VTWLAFW DPIN KEFKYVFLAASSSLKGQSDKEKYEKAR LKDYIH IRA YTKDF ++
Sbjct: 549  VTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHSIRAAYTKDFVSR 608

Query: 1452 DLGKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKLVPPNKLEFDFLGKDS 1631
            D  +RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NV+ +PPNKL+FDFLGKDS
Sbjct: 609  DGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDS 668

Query: 1632 IRYLNTVDVELPVYKAIGQFKNGKNDGEDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNA 1811
            I+Y+NTV+VELPVYKAIGQF+ GK   +DLFDKLDT+KLNAHLKELMPGLTAKVFRTYNA
Sbjct: 669  IQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNA 728

Query: 1812 SITLDDQLHKNTXXXXXXXXXXXYNLANKEVAIICNHQRTESKSHTAQMERLQGKILELK 1991
            SITLD  L+K T           Y  ANKEVAIICNHQRT SK+H+AQM RL  KI +LK
Sbjct: 729  SITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 788

Query: 1992 KEVDDLKTDLDRAKKGRPPLARFGPDGKQVEKRNLAPDAIQRKINKTYERIEKMERDI 2165
              + DL+ DLDRAKKG+PPL +   DGK+  KRNLAP+A++RK+ +T  +IEKMERD+
Sbjct: 789  GVLKDLRVDLDRAKKGKPPLMK-DSDGKR--KRNLAPEALERKMAQTNAKIEKMERDM 843


>dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]
          Length = 894

 Score =  822 bits (2124), Expect = 0.0
 Identities = 447/724 (61%), Positives = 513/724 (70%), Gaps = 4/724 (0%)
 Frame = +3

Query: 3    PPAKPNVDSEDSDDDKPLSARLLVSTSALQKSNSHNVAKVHSPHLPXXXXXXXXXXXXXR 182
            P A+P  DSED   +KPLSARL    + L K +S+N  K      P             R
Sbjct: 132  PAAEPYGDSED---EKPLSARLF---TGLTKGSSNNANKGLINSSPASLPVPKPEIN--R 183

Query: 183  SVEDSEDEAPLSSTIKMKS-AGEPSVK--KEIEEKSLASKAKQNGSIKKETEQLNSPKLL 353
              +DS+DE PLSS  ++K+ AG  +VK  +  + K+L S  +QNGSI + ++   S   +
Sbjct: 184  YSDDSDDEIPLSSKFRLKANAGTSTVKSYESDDNKTLVSNFQQNGSINRGSK---SSIKV 240

Query: 354  NKRLLGDNSTPTHSSAKKPKLXXXXXXXXXXXXXXXXXXXTEXXXXXXXXXXXXVPIAER 533
            NKR LG+  +   SS KKPKL                    +            VPI++R
Sbjct: 241  NKRPLGEVKSSVQSSVKKPKLSDASTPVNNKQASKKAEPKADDSDDDH------VPISQR 294

Query: 534  LKKAAVSAG-TSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQPSSGDGQKWTT 710
            +KK+A S   +S                                   + PSSG+G+KW T
Sbjct: 295  MKKSATSGNKSSTAKQKVTKVVSSSMKKASKKFKKVVKKSKYSKSSKVPPSSGEGKKWNT 354

Query: 711  LEHNGVIFPPDYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKEKFVENFMND 890
            L HNGVIFPP YKPHGVKMLY G+PVDLTPEQEEVATMFAVM DT+Y TK KF ENFM+D
Sbjct: 355  LVHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMFAVMLDTDYMTKSKFKENFMDD 414

Query: 891  WRGILGRNHIIKKFELCDFTPIYDWHQAEKEKRKQMTAEEKRVAKEEKLKQEEKYMWAVV 1070
            WR ILG+NH+I+  E CDFTPIY+WHQ EKEK+K+MTAEEK+V KEE+LKQEEKYMWA+V
Sbjct: 415  WRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKKMTAEEKKVLKEERLKQEEKYMWAIV 474

Query: 1071 DGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKGVPIPECPIPGQRWK 1250
            +GVKEKVGNFRVEPP LFRGRGEHPKMGKLKK IRPSDITINIGK  PIPECPIPG+ WK
Sbjct: 475  NGVKEKVGNFRVEPPSLFRGRGEHPKMGKLKKCIRPSDITINIGKDAPIPECPIPGESWK 534

Query: 1251 EVKHDNTVTWLAFWIDPINSKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIHDIRANY 1430
            E++HDNTVTWLAFW DPI  +EFKYVFLAASSSLKGQSDKEKYEKARLLKD+I  IRA Y
Sbjct: 535  EIRHDNTVTWLAFWNDPIKPREFKYVFLAASSSLKGQSDKEKYEKARLLKDFIQGIRAAY 594

Query: 1431 TKDFTNKDLGKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKLVPPNKLEF 1610
            TKDF +KD+ KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENV+  PP+ L+F
Sbjct: 595  TKDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPKPPSILKF 654

Query: 1611 DFLGKDSIRYLNTVDVELPVYKAIGQFKNGKNDGEDLFDKLDTSKLNAHLKELMPGLTAK 1790
            DFLGKDSIRY N V+VELPVYKAI QF+ GK  G+DLFDKLDTSKLNAHLK LMPGLTAK
Sbjct: 655  DFLGKDSIRYQNEVEVELPVYKAIQQFRTGKRGGDDLFDKLDTSKLNAHLKGLMPGLTAK 714

Query: 1791 VFRTYNASITLDDQLHKNTXXXXXXXXXXXYNLANKEVAIICNHQRTESKSHTAQMERLQ 1970
            VFRTYNASITLD+ L + T           Y  ANKEVAIICNHQRT SKSH AQM RL 
Sbjct: 715  VFRTYNASITLDEMLSRETKGGNVAEKIVVYQHANKEVAIICNHQRTVSKSHPAQMTRLN 774

Query: 1971 GKILELKKEVDDLKTDLDRAKKGRPPLARFGPDGKQVEKRNLAPDAIQRKINKTYERIEK 2150
            GKI ELK  +D L+TDL RAKKG+PPL     DGK   KRNL P+A++RKI +T  +IEK
Sbjct: 775  GKIDELKGILDGLQTDLARAKKGKPPLE--DADGK--PKRNLTPEALERKIGQTNAKIEK 830

Query: 2151 MERD 2162
            MERD
Sbjct: 831  MERD 834


>ref|XP_006452479.1| hypothetical protein CICLE_v10007398mg [Citrus clementina]
            gi|567920950|ref|XP_006452481.1| hypothetical protein
            CICLE_v10007398mg [Citrus clementina]
            gi|557555705|gb|ESR65719.1| hypothetical protein
            CICLE_v10007398mg [Citrus clementina]
            gi|557555707|gb|ESR65721.1| hypothetical protein
            CICLE_v10007398mg [Citrus clementina]
          Length = 902

 Score =  821 bits (2120), Expect = 0.0
 Identities = 440/718 (61%), Positives = 507/718 (70%), Gaps = 4/718 (0%)
 Frame = +3

Query: 24   DSEDSDDDKPLSARLLVSTSALQKSNSHNVAKVHSPHLPXXXXXXXXXXXXXRSVEDSED 203
            D  DS+DDKPLSARL  +T  + +    + A      +                 EDS+D
Sbjct: 149  DDNDSEDDKPLSARLKGNTKNVNQGIGASKADAAISEV-----------NVKTDPEDSDD 197

Query: 204  EAPLSSTIKMKSAGEPSVKK--EIEEKSLASKAKQNGSIKKETEQLNSPKLLNKRLLGDN 377
            E PLSS     +AG    K     E+K LASK +QNGS  +ET+Q +S   + KR L   
Sbjct: 198  EVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPV-KRPLQKA 256

Query: 378  STPTHSSAKKPKLXXXXXXXXXXXXXXXXXXXTEXXXXXXXXXXXXVPIAERLKKAAVSA 557
            S+   SSAKKPK+                    +            +PI++R+K +A S 
Sbjct: 257  SSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDH--------IPISQRMKNSAPSV 308

Query: 558  GTSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LQPSSGDGQK-WTTLEHNGVI 731
              S                                    + P SGDGQK WTTL HNGVI
Sbjct: 309  KKSVTNTAKATKSVSSSSKKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVI 368

Query: 732  FPPDYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKEKFVENFMNDWRGILGR 911
            FPP Y PHGVKMLY G+ V+LTPEQEEVATMFAVM DT+Y  K KF ENF NDWR +LG+
Sbjct: 369  FPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGK 428

Query: 912  NHIIKKFELCDFTPIYDWHQAEKEKRKQMTAEEKRVAKEEKLKQEEKYMWAVVDGVKEKV 1091
            NH+I+  E CDF PIYDWHQ +KEK+KQM++EEK+  KEEKLKQEEKYMWA+VDGVKEKV
Sbjct: 429  NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKLKQEEKYMWAIVDGVKEKV 488

Query: 1092 GNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKGVPIPECPIPGQRWKEVKHDNT 1271
            GNFRVEPPGLFRGRGEHPKMGKLKKRI+PSDITINIGK VPIPECPIPG+ WKEVKHDNT
Sbjct: 489  GNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNT 548

Query: 1272 VTWLAFWIDPINSKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIHDIRANYTKDFTNK 1451
            VTWLAFW DPIN KEFKYVFLAASSSLKGQSD+EKYEKAR LKDYIH IRA YTKDF ++
Sbjct: 549  VTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSR 608

Query: 1452 DLGKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKLVPPNKLEFDFLGKDS 1631
            D  +RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NV+ +PPNKL+FDFLGKDS
Sbjct: 609  DGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDS 668

Query: 1632 IRYLNTVDVELPVYKAIGQFKNGKNDGEDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNA 1811
            I+Y+NTV+VELPVYKAIGQF+ GK   +DLFDKLDT+KLNAHLKELMPGLTAKVFRTYNA
Sbjct: 669  IQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNA 728

Query: 1812 SITLDDQLHKNTXXXXXXXXXXXYNLANKEVAIICNHQRTESKSHTAQMERLQGKILELK 1991
            SITLD  L+K T           Y  ANKEVAIICNHQRT SK+H+AQM RL  KI +LK
Sbjct: 729  SITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 788

Query: 1992 KEVDDLKTDLDRAKKGRPPLARFGPDGKQVEKRNLAPDAIQRKINKTYERIEKMERDI 2165
              + DL+ DLDRAKKG+PPL +   DGK+  KRNLAP+A++RK+ +T  +IEKMERD+
Sbjct: 789  GVLKDLRVDLDRAKKGKPPLMK-DSDGKR--KRNLAPEALERKMAQTNAKIEKMERDM 843


>emb|CBI28783.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  819 bits (2115), Expect = 0.0
 Identities = 399/496 (80%), Positives = 436/496 (87%)
 Frame = +3

Query: 678  PSSGDGQKWTTLEHNGVIFPPDYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYAT 857
            P+SG+GQKWTTLEHNGVIFPP YKPHGVKMLYNG+PVDLTPEQEEVATMFAVMKDT+YAT
Sbjct: 174  PNSGEGQKWTTLEHNGVIFPPPYKPHGVKMLYNGRPVDLTPEQEEVATMFAVMKDTDYAT 233

Query: 858  KEKFVENFMNDWRGILGRNHIIKKFELCDFTPIYDWHQAEKEKRKQMTAEEKRVAKEEKL 1037
            K +F+ENFMNDWR  LG+NH+IKKFELCDFTPIY+WH+ EKEK+KQMT EEK+  KEEKL
Sbjct: 234  KPRFIENFMNDWRVRLGKNHVIKKFELCDFTPIYEWHEKEKEKKKQMTTEEKKALKEEKL 293

Query: 1038 KQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKGVPI 1217
            KQE+KYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRI PSDITINIGK  P+
Sbjct: 294  KQEDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRICPSDITINIGKEAPV 353

Query: 1218 PECPIPGQRWKEVKHDNTVTWLAFWIDPINSKEFKYVFLAASSSLKGQSDKEKYEKARLL 1397
            PECPIPG+RWKEV+HDNTVTWLAFW DPIN KEFKYVFLAASSSLKGQSDKEKYEKARLL
Sbjct: 354  PECPIPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLL 413

Query: 1398 KDYIHDIRANYTKDFTNKDLGKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVEN 1577
            KDYI +IRA YTKDFTNKD  KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVEN
Sbjct: 414  KDYIQNIRATYTKDFTNKDTMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVEN 473

Query: 1578 VKLVPPNKLEFDFLGKDSIRYLNTVDVELPVYKAIGQFKNGKNDGEDLFDKLDTSKLNAH 1757
            V LVPPNKLEFDFLGKDSIRY NTV+VELPVYKAIGQFK GK+ G+DLFDKLDTSKLNAH
Sbjct: 474  VALVPPNKLEFDFLGKDSIRYFNTVEVELPVYKAIGQFKTGKSGGDDLFDKLDTSKLNAH 533

Query: 1758 LKELMPGLTAKVFRTYNASITLDDQLHKNTXXXXXXXXXXXYNLANKEVAIICNHQRTES 1937
            LKELMPGLTAKVFRTYNASITLD+ L++             Y  ANKEVAIICNHQR+ S
Sbjct: 534  LKELMPGLTAKVFRTYNASITLDEMLNREARGGDAMEKIVIYQHANKEVAIICNHQRSVS 593

Query: 1938 KSHTAQMERLQGKILELKKEVDDLKTDLDRAKKGRPPLARFGPDGKQVEKRNLAPDAIQR 2117
            KSH  QM RL  K+ EL+  +D+LKTDL RAKKG+PPL     DGK   K+N+ P+ ++R
Sbjct: 594  KSHDVQMSRLSEKMRELQGVLDELKTDLARAKKGKPPLK--DSDGK--PKKNMTPEVLER 649

Query: 2118 KINKTYERIEKMERDI 2165
            KI +T  +IEKMERD+
Sbjct: 650  KIAQTNTKIEKMERDM 665



 Score = 58.9 bits (141), Expect = 9e-06
 Identities = 46/133 (34%), Positives = 63/133 (47%)
 Frame = +3

Query: 6   PAKPNVDSEDSDDDKPLSARLLVSTSALQKSNSHNVAKVHSPHLPXXXXXXXXXXXXXRS 185
           P   N +SEDS+DDKPLSA+L   ++ L K NSH +  + SP L               S
Sbjct: 9   PPVANGESEDSEDDKPLSAKL---SARLPKGNSHVLKGLSSPVLQSQKTKVD-------S 58

Query: 186 VEDSEDEAPLSSTIKMKSAGEPSVKKEIEEKSLASKAKQNGSIKKETEQLNSPKLLNKRL 365
            +DSEDE PL   +++KS    S  K ++ K L+S A           Q    K+ NK L
Sbjct: 59  SDDSEDEIPLLLKLQLKSRKGASSSKLLDSKGLSSPASSR-------PQSQKAKVNNKNL 111

Query: 366 LGDNSTPTHSSAK 404
             D+      S+K
Sbjct: 112 SDDSEDEIPLSSK 124


>ref|XP_004149585.1| PREDICTED: DNA topoisomerase 1-like [Cucumis sativus]
            gi|449503189|ref|XP_004161878.1| PREDICTED: DNA
            topoisomerase 1-like [Cucumis sativus]
          Length = 889

 Score =  818 bits (2112), Expect = 0.0
 Identities = 440/725 (60%), Positives = 512/725 (70%), Gaps = 8/725 (1%)
 Frame = +3

Query: 15   PNVDSEDSDDDKPLSARLLVSTSALQKSNSHNVAKVHSPHLPXXXXXXXXXXXXXRSVED 194
            P+ ++ DS+DDKPLS RL  + +   K     V K                    +S+ D
Sbjct: 135  PSQENSDSEDDKPLSIRLKGNPNQPNKGLVSTVPK----------------NKVKKSLAD 178

Query: 195  SEDEAPLSSTIKMKSAGEPSVKKEI---EEKSLASKAKQNGSIKKETEQLNSPKLLN-KR 362
            S+DE PLSS  +MK A      K+    E+K L  K  QNGS  ++  +L  P +L+ KR
Sbjct: 179  SDDEVPLSSKFQMKHASGVLGSKQHGFDEKKPLVPKVHQNGSTSRD--KLQKPAVLSSKR 236

Query: 363  LLG--DNSTPTHSSAKKPKLXXXXXXXXXXXXXXXXXXXTEXXXXXXXXXXXXVPIAERL 536
             L   D+ +P+    KKPKL                    +            +PI++R+
Sbjct: 237  PLPNEDSHSPSQFPTKKPKLTDSSSPLNSKLVSLKAKQEVDDDDDD-------IPISQRM 289

Query: 537  KKAAVSAG-TSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQPSSGDGQK-WTT 710
            KK + +   +S                                   L PS+GDGQK WTT
Sbjct: 290  KKVSATVNKSSSSKPTISKVVSSSIKKTFKKSKKPVKKSKYVKSTKLLPSAGDGQKKWTT 349

Query: 711  LEHNGVIFPPDYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKEKFVENFMND 890
            L HNGVIFPP Y+ HGVKMLY G+PVDLTP QEEVATMFAVMKDT+Y  K KF ENF ND
Sbjct: 350  LVHNGVIFPPPYQTHGVKMLYKGKPVDLTPPQEEVATMFAVMKDTDYMLKPKFKENFWND 409

Query: 891  WRGILGRNHIIKKFELCDFTPIYDWHQAEKEKRKQMTAEEKRVAKEEKLKQEEKYMWAVV 1070
            WR +LG+NH+I+  + CDFTPIYDW+Q EKEK+KQMT EEK+  KEEKLKQEEKYMWA++
Sbjct: 410  WRKLLGKNHVIQNLDDCDFTPIYDWYQMEKEKKKQMTTEEKKAVKEEKLKQEEKYMWAIL 469

Query: 1071 DGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKGVPIPECPIPGQRWK 1250
            DGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI PSDITINIGKG PIPECPIPG+RWK
Sbjct: 470  DGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRICPSDITINIGKGAPIPECPIPGERWK 529

Query: 1251 EVKHDNTVTWLAFWIDPINSKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIHDIRANY 1430
            EV+HDNTVTWLAFW DPIN KEFKYVFLAASSSLKGQSDKEKYEKAR+LKDYI +IR  Y
Sbjct: 530  EVRHDNTVTWLAFWNDPINQKEFKYVFLAASSSLKGQSDKEKYEKARMLKDYIKNIRNAY 589

Query: 1431 TKDFTNKDLGKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKLVPPNKLEF 1610
            TKDFT+KD  +RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVK VPPN LEF
Sbjct: 590  TKDFTSKDPTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKAVPPNLLEF 649

Query: 1611 DFLGKDSIRYLNTVDVELPVYKAIGQFKNGKNDGEDLFDKLDTSKLNAHLKELMPGLTAK 1790
            +FLGKDSIRY NTV+VELPV+KAI QF++GK+  +DLFDKLDTSKLNAHLK+LMPGLTAK
Sbjct: 650  NFLGKDSIRYENTVEVELPVFKAITQFQSGKSGTDDLFDKLDTSKLNAHLKDLMPGLTAK 709

Query: 1791 VFRTYNASITLDDQLHKNTXXXXXXXXXXXYNLANKEVAIICNHQRTESKSHTAQMERLQ 1970
            VFRTYNASITLDD L++ T           Y  ANKEVAIICNHQRT SKSH AQM RL 
Sbjct: 710  VFRTYNASITLDDMLNRGTKNGEVSEKIVTYQHANKEVAIICNHQRTVSKSHGAQMTRLN 769

Query: 1971 GKILELKKEVDDLKTDLDRAKKGRPPLARFGPDGKQVEKRNLAPDAIQRKINKTYERIEK 2150
             KI EL+  + +LK DLDRAKKG+PPL   G DGKQ  KRNL P+A+++KI++T  +IEK
Sbjct: 770  EKISELRDILKELKIDLDRAKKGKPPLK--GSDGKQ--KRNLTPEALEKKISQTNAKIEK 825

Query: 2151 MERDI 2165
            +ERD+
Sbjct: 826  IERDM 830


>dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]
          Length = 925

 Score =  813 bits (2101), Expect = 0.0
 Identities = 447/742 (60%), Positives = 499/742 (67%), Gaps = 22/742 (2%)
 Frame = +3

Query: 3    PPAKPNVDSEDSDDDKPLSARLLVSTSALQKSNSHNVAKVHSPHLPXXXXXXXXXXXXXR 182
            P AK N +SE SDD+KPLSAR     S+  KSN  N     S  +               
Sbjct: 138  PAAKANSNSESSDDEKPLSARTF-GCSSKGKSNHANKEGGDSCSI---------RRPVIE 187

Query: 183  SVEDSEDEAPLSSTIKMKSAGEPSVKKEI---EEKSLASKAKQNGSIKKETEQLNSPKLL 353
              EDSEDE PLS     KS+   S  K     E+K LA+K +QNGS  ++     S  L 
Sbjct: 188  ESEDSEDEKPLSCRFTSKSSLGESTSKSYDSDEKKPLAAKVQQNGSASRDGPMNKSASLS 247

Query: 354  NKRLLGDNSTPTHSSAKKPKLXXXXXXXXXXXXXXXXXXXTEXXXXXXXXXXXX------ 515
            NKR  G+  +   SS KKPKL                    E                  
Sbjct: 248  NKRPPGEAKSLNQSSVKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKSQSA 307

Query: 516  -----------VPIAERLKKAAVSAGTSQ-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 659
                       VPI++R+KK+  S   S  P                             
Sbjct: 308  TSKPKDDDDDNVPISQRIKKSPASVSKSSVPVKKASTVVSSSLKKVNKNSKKVIKKTAYT 367

Query: 660  XXXXLQPSSGDGQKWTTLEHNGVIFPPDYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMK 839
                + P SG+GQKWTTL HNGVIFPP YKPHGVKMLY  QP+ LTPEQEEVATMFAVM 
Sbjct: 368  KSSKVPPGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEEVATMFAVML 427

Query: 840  DTEYATKEKFVENFMNDWRGILGRNHIIKKFELCDFTPIYDWHQAEKEKRKQMTAEEKRV 1019
            DT+Y  K  F ENF +DW+ ILG+NH+I+  E CDF PIY+WHQ EKEK+KQMT EEK+ 
Sbjct: 428  DTDYMNKPCFKENFFSDWKKILGKNHMIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKA 487

Query: 1020 AKEEKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINI 1199
             KEEKL+QEEKYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRP DITINI
Sbjct: 488  LKEEKLQQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPRDITINI 547

Query: 1200 GKGVPIPECPIPGQRWKEVKHDNTVTWLAFWIDPINSKEFKYVFLAASSSLKGQSDKEKY 1379
            GK  PIPECPIPG+RWKEV++ NTVTWLA+W DPIN KEFKYVFLAASS+LKGQSDKEKY
Sbjct: 548  GKDAPIPECPIPGERWKEVRNGNTVTWLAYWNDPINQKEFKYVFLAASSTLKGQSDKEKY 607

Query: 1380 EKARLLKDYIHDIRANYTKDFT-NKDLGKRQIAVATYLIDKLALRAGNEKDDDEADTVGC 1556
            EKARLLKDYIH IRA YTKDFT NKD  K+QIAVATYLIDKLALRAGNEKDDDEADTVGC
Sbjct: 608  EKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGC 667

Query: 1557 CTLKVENVKLVPPNKLEFDFLGKDSIRYLNTVDVELPVYKAIGQFKNGKNDGEDLFDKLD 1736
            CTLKVENV+ VPPN L+FDFLGKDSIRY N V VE  V+KAI QF++GK   EDLFD+LD
Sbjct: 668  CTLKVENVEPVPPNILKFDFLGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGSEDLFDRLD 727

Query: 1737 TSKLNAHLKELMPGLTAKVFRTYNASITLDDQLHKNTXXXXXXXXXXXYNLANKEVAIIC 1916
            TSKLNAHLKELMPGLTAKVFRTYNASITLDD L K T           Y  ANKEVAIIC
Sbjct: 728  TSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSKETKGGEVAENVVVYQHANKEVAIIC 787

Query: 1917 NHQRTESKSHTAQMERLQGKILELKKEVDDLKTDLDRAKKGRPPLARFGPDGKQVEKRNL 2096
            NHQRT SKSH+AQM RL  KI ELK  +++LKTDL RAKKG+PP    G DGK   KRNL
Sbjct: 788  NHQRTVSKSHSAQMSRLNEKIDELKTALEELKTDLSRAKKGKPPTK--GADGK--AKRNL 843

Query: 2097 APDAIQRKINKTYERIEKMERD 2162
             P+A++RKI +T  +IEKMERD
Sbjct: 844  NPEALERKITQTNAKIEKMERD 865


>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
          Length = 910

 Score =  812 bits (2097), Expect = 0.0
 Identities = 432/716 (60%), Positives = 492/716 (68%), Gaps = 3/716 (0%)
 Frame = +3

Query: 24   DSEDSDDDKPLSARLLVSTSALQKSNSHNVAKVHSPHLPXXXXXXXXXXXXXRSVEDSED 203
            DSEDSDD KPLS R   S+S   K N++ V+K  S                    EDS+D
Sbjct: 162  DSEDSDDGKPLSLRHSASSS---KGNTNQVSKEGSKP----------------ENEDSDD 202

Query: 204  EAPLSSTIKMKSAGEPSVKKEIE---EKSLASKAKQNGSIKKETEQLNSPKLLNKRLLGD 374
            E PLSS   +KS    S  K  +   +K LA K + NGS  ++ +      + NKR  GD
Sbjct: 203  EKPLSSRFPLKSGVGESTSKAYDSDDDKPLAKKLQHNGSAMRDGQPNKYSNMSNKRPPGD 262

Query: 375  NSTPTHSSAKKPKLXXXXXXXXXXXXXXXXXXXTEXXXXXXXXXXXXVPIAERLKKAAVS 554
              +    S KKPKL                    E            +PI++R+KK+  S
Sbjct: 263  IKSSNQLSVKKPKLSSVTAPTNKKQASVKPEPKAEDDDDDH------LPISQRIKKSPTS 316

Query: 555  AGTSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQPSSGDGQKWTTLEHNGVIF 734
               S                                   + PSSG+G+KW  LEHNGVIF
Sbjct: 317  ESKSSSIKKTTKVVSSSVKKVNKKSKKVMKNSKYSKSSKVPPSSGEGKKWNKLEHNGVIF 376

Query: 735  PPDYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKEKFVENFMNDWRGILGRN 914
            PP YKPHG+KMLY G+PVDLTPEQEEVATMFAVM DT+Y  K +F ENF  DW+ ILG+N
Sbjct: 377  PPPYKPHGIKMLYKGKPVDLTPEQEEVATMFAVMLDTDYMNKPRFKENFFGDWKKILGKN 436

Query: 915  HIIKKFELCDFTPIYDWHQAEKEKRKQMTAEEKRVAKEEKLKQEEKYMWAVVDGVKEKVG 1094
            H+I+  E CDF+PIY+WHQ+EKEK+KQMT EEK+  KEEKLKQEEKYMWA VDG KEKVG
Sbjct: 437  HVIQNLENCDFSPIYEWHQSEKEKKKQMTTEEKKALKEEKLKQEEKYMWAWVDGKKEKVG 496

Query: 1095 NFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKGVPIPECPIPGQRWKEVKHDNTV 1274
            NFRVEPPGLFRGRGEHPKMGKLKKRIRP DITINIGK  PIPECP+PG+RWKEV+HDNTV
Sbjct: 497  NFRVEPPGLFRGRGEHPKMGKLKKRIRPCDITINIGKDAPIPECPVPGERWKEVRHDNTV 556

Query: 1275 TWLAFWIDPINSKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIHDIRANYTKDFTNKD 1454
            TWLAFW DPIN KEFKYVFLAASS+LKG SDKEKYEKARLLKDYI  IRA YTKDF +KD
Sbjct: 557  TWLAFWNDPINPKEFKYVFLAASSTLKGLSDKEKYEKARLLKDYIQGIRAAYTKDFASKD 616

Query: 1455 LGKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKLVPPNKLEFDFLGKDSI 1634
              K+QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENV+ VPPN L+FDFLGKDSI
Sbjct: 617  PTKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKFDFLGKDSI 676

Query: 1635 RYLNTVDVELPVYKAIGQFKNGKNDGEDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNAS 1814
            RY N V+VE  V+KAI QF++GK    DLFD LDTSKLNAHLKELMPGLTAKVFRTYNAS
Sbjct: 677  RYQNEVEVEAAVFKAIQQFRSGKEGSSDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNAS 736

Query: 1815 ITLDDQLHKNTXXXXXXXXXXXYNLANKEVAIICNHQRTESKSHTAQMERLQGKILELKK 1994
            ITLDD L + T           Y  ANKEVAIICNHQRT SKSH+AQM RL  KI ELK 
Sbjct: 737  ITLDDMLSRETKGGDVAEKVVVYQHANKEVAIICNHQRTVSKSHSAQMLRLNEKIEELKA 796

Query: 1995 EVDDLKTDLDRAKKGRPPLARFGPDGKQVEKRNLAPDAIQRKINKTYERIEKMERD 2162
             V++LK+DL R KKG+PPL     DGK   KRNL P+++++KI +T  +IEKMERD
Sbjct: 797  VVEELKSDLSRVKKGKPPLKSKNADGK--PKRNLNPESLEKKIAQTNAKIEKMERD 850


>dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]
          Length = 927

 Score =  811 bits (2094), Expect = 0.0
 Identities = 444/744 (59%), Positives = 500/744 (67%), Gaps = 24/744 (3%)
 Frame = +3

Query: 3    PPAKPNVDSEDSDDDKPLSARLLVSTSALQKSNSHNVAKVHSPHLPXXXXXXXXXXXXXR 182
            P AK N +SE SDD+KPLSAR     S+  KSN  N     S  +               
Sbjct: 138  PAAKANSNSESSDDEKPLSARTF-GCSSKGKSNHANKEGGDSCSI---------RRRVIE 187

Query: 183  SVEDSEDEAPLSSTIKMKSAGEPSVKKEI---EEKSLASKAKQNGSIKKETEQLNSPKLL 353
              EDSEDE PLS     KS+   S  K     E+K LA+K +QNGS+ ++     S  L 
Sbjct: 188  ESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKKPLAAKVQQNGSVSRDGPMNKSASLS 247

Query: 354  NKRLLGDNSTPTHSSAKKPKLXXXXXXXXXXXXXXXXXXXTEXXXXXXXXXXXX------ 515
            NKR  G+  +   SS KKPKL                    +                  
Sbjct: 248  NKRPPGEVKSLNQSSVKKPKLSSPITSISNKQAAVKPEPEPKAEDDDDNIPLSQRGKKSQ 307

Query: 516  -------------VPIAERLKKAAVSAG-TSQPXXXXXXXXXXXXXXXXXXXXXXXXXXX 653
                         VPIA+R+KK+  S   +S P                           
Sbjct: 308  AATSKPKDEDDDNVPIAQRIKKSPASVSKSSAPVKKASTVVSPSLKKVNKNSKKVIKKTA 367

Query: 654  XXXXXXLQPSSGDGQKWTTLEHNGVIFPPDYKPHGVKMLYNGQPVDLTPEQEEVATMFAV 833
                  + P SG+GQKWTTL HNGVIFPP Y PHGVKMLY  QP+ LTPEQEEVATMFAV
Sbjct: 368  YTKSSKVPPGSGEGQKWTTLVHNGVIFPPPYNPHGVKMLYKRQPITLTPEQEEVATMFAV 427

Query: 834  MKDTEYATKEKFVENFMNDWRGILGRNHIIKKFELCDFTPIYDWHQAEKEKRKQMTAEEK 1013
            M DT+Y  K +F ENF +DW+ +LG+NH I+  E CDF PIY+WHQ EKEK+KQMT EEK
Sbjct: 428  MLDTDYMNKPRFKENFFSDWKKMLGKNHTIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEK 487

Query: 1014 RVAKEEKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITI 1193
            +  KE+KL+QEEKYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRP DITI
Sbjct: 488  KALKEDKLQQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPRDITI 547

Query: 1194 NIGKGVPIPECPIPGQRWKEVKHDNTVTWLAFWIDPINSKEFKYVFLAASSSLKGQSDKE 1373
            NIGK  PIPECPIPG+RWKEV++DNTVTWLAFWIDPIN KEFKYVFLAASS+LKGQSDKE
Sbjct: 548  NIGKDAPIPECPIPGERWKEVRNDNTVTWLAFWIDPINQKEFKYVFLAASSTLKGQSDKE 607

Query: 1374 KYEKARLLKDYIHDIRANYTKDFT-NKDLGKRQIAVATYLIDKLALRAGNEKDDDEADTV 1550
            KYEKARLLKDYIH IRA YTKDFT NKD  K+QIAVATYLIDKLALRAGNEKDDDEADTV
Sbjct: 608  KYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTV 667

Query: 1551 GCCTLKVENVKLVPPNKLEFDFLGKDSIRYLNTVDVELPVYKAIGQFKNGKNDGEDLFDK 1730
            GCCTLKVENV+ VPPN L+FDFLGKDSIRY N V VE  V+KAI QF++GK   EDLFD+
Sbjct: 668  GCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGSEDLFDR 727

Query: 1731 LDTSKLNAHLKELMPGLTAKVFRTYNASITLDDQLHKNTXXXXXXXXXXXYNLANKEVAI 1910
            LDTSKLNAHLKELMPGLTAKVFRTYNASITLDD L K T           Y  ANKEVAI
Sbjct: 728  LDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSKETKGGEVAEKVVVYQHANKEVAI 787

Query: 1911 ICNHQRTESKSHTAQMERLQGKILELKKEVDDLKTDLDRAKKGRPPLARFGPDGKQVEKR 2090
            ICNHQRT SKSH+AQM RL  KI ELK  +++LKTDL R KKG+PP    G DGK   KR
Sbjct: 788  ICNHQRTVSKSHSAQMSRLNEKIDELKTAMEELKTDLSRVKKGKPPSK--GADGK--PKR 843

Query: 2091 NLAPDAIQRKINKTYERIEKMERD 2162
            NL P+A++RK+ +   +IEKMERD
Sbjct: 844  NLNPEALERKMAQINAKIEKMERD 867


>dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. glabra]
          Length = 920

 Score =  810 bits (2093), Expect = 0.0
 Identities = 446/742 (60%), Positives = 503/742 (67%), Gaps = 22/742 (2%)
 Frame = +3

Query: 3    PPAKPNVDSEDSDDDKPLSARLLVSTSALQKSNSHNVAKVHSPHLPXXXXXXXXXXXXXR 182
            P AK N +SE SDD+KPLSAR     S+  KSN  N     S  +               
Sbjct: 139  PAAKANSNSESSDDEKPLSARTF-GCSSKGKSNHANKEGGDSCSI---------RRPVIE 188

Query: 183  SVEDSEDEAPLSSTIKMKSAGEPSVKKEI---EEKSLASKAKQNGSIKKETEQLNSPKLL 353
              EDSEDE PLS     KS+   S  K     E+K LA+K + NGS  +++    S  L 
Sbjct: 189  ESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKKPLAAKVQPNGSASRDSPMNKSASLS 248

Query: 354  NKRLLGDNSTPTHSSAKKPKLXXXXXXXXXXXXXXXXXXXTEXXXXXXXXXXXX------ 515
            NKR  G+  +   SS KKPKL                    E                  
Sbjct: 249  NKRPPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKSQTA 308

Query: 516  -----------VPIAERLKKAAVSAG-TSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 659
                       VPI++R+KK+  S   +S P                             
Sbjct: 309  TSKPKDEDDDNVPISQRIKKSPASVSKSSAPVKKASTVVSPSLKKVNKKSKKVIKKTAYT 368

Query: 660  XXXXLQPSSGDGQKWTTLEHNGVIFPPDYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMK 839
                + P SG+GQKWTTL HNGVIFPP YKPHGVKMLY  QP+ LTPEQEEVATMFAVM 
Sbjct: 369  KSSKVPPGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEEVATMFAVML 428

Query: 840  DTEYATKEKFVENFMNDWRGILGRNHIIKKFELCDFTPIYDWHQAEKEKRKQMTAEEKRV 1019
            DT+Y  K +F ENF +DW+ +LG+NH I+  E CDF PIY+WHQ EKEK+KQMT EEK+ 
Sbjct: 429  DTDYMNKPRFKENFFSDWKKMLGKNHTIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKA 488

Query: 1020 AKEEKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINI 1199
             KEEKL+QEEKYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRP DITINI
Sbjct: 489  LKEEKLQQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPRDITINI 548

Query: 1200 GKGVPIPECPIPGQRWKEVKHDNTVTWLAFWIDPINSKEFKYVFLAASSSLKGQSDKEKY 1379
            GK  PIPECPIPG+RWKEV++DNTVTWLA+W DPIN KEFKYVFLAASS+LKGQSDKEKY
Sbjct: 549  GKDAPIPECPIPGERWKEVRNDNTVTWLAYWNDPINQKEFKYVFLAASSTLKGQSDKEKY 608

Query: 1380 EKARLLKDYIHDIRANYTKDFT-NKDLGKRQIAVATYLIDKLALRAGNEKDDDEADTVGC 1556
            EKARLLKDYIH IRA YTKDFT NKD  K+QIAVATYLIDKLALRAGNEKDDDEADTVGC
Sbjct: 609  EKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGC 668

Query: 1557 CTLKVENVKLVPPNKLEFDFLGKDSIRYLNTVDVELPVYKAIGQFKNGKNDGEDLFDKLD 1736
            CTLKVENV+ VPPN L+FDFLGKDSIRY N V VE  V+KAI QF++GK   EDLFD+LD
Sbjct: 669  CTLKVENVEPVPPNILKFDFLGKDSIRYQNEVQVEPAVFKAIQQFRSGKEGSEDLFDRLD 728

Query: 1737 TSKLNAHLKELMPGLTAKVFRTYNASITLDDQLHKNTXXXXXXXXXXXYNLANKEVAIIC 1916
            TSKLNAHLKELMPGLTAKVFRTYNASITLDD L K T           Y  ANKEVAIIC
Sbjct: 729  TSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSKKTNGGEVAEKVVVYQHANKEVAIIC 788

Query: 1917 NHQRTESKSHTAQMERLQGKILELKKEVDDLKTDLDRAKKGRPPLARFGPDGKQVEKRNL 2096
            NHQRT SKSH+AQM RL  KI ELK  +++LKTDL RAKKG+ PL++ G DGK   KRNL
Sbjct: 789  NHQRTVSKSHSAQMSRLNEKIDELKTALEELKTDLSRAKKGK-PLSK-GADGK--PKRNL 844

Query: 2097 APDAIQRKINKTYERIEKMERD 2162
             P+A++RKI +T  +IEKMERD
Sbjct: 845  NPEALERKIAQTNAKIEKMERD 866


>dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata]
          Length = 920

 Score =  810 bits (2093), Expect = 0.0
 Identities = 446/742 (60%), Positives = 503/742 (67%), Gaps = 22/742 (2%)
 Frame = +3

Query: 3    PPAKPNVDSEDSDDDKPLSARLLVSTSALQKSNSHNVAKVHSPHLPXXXXXXXXXXXXXR 182
            P AK N +SE SDD+KPLSAR     S+  KSN  N     S  +               
Sbjct: 139  PAAKANSNSESSDDEKPLSARTF-GCSSKGKSNHANKEGGDSCSI---------RRPVIE 188

Query: 183  SVEDSEDEAPLSSTIKMKSAGEPSVKKEI---EEKSLASKAKQNGSIKKETEQLNSPKLL 353
              EDSEDE PLS     KS+   S  K     E+K LA+K + NGS  +++    S  L 
Sbjct: 189  ESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKKPLAAKVQPNGSASRDSPMNKSASLS 248

Query: 354  NKRLLGDNSTPTHSSAKKPKLXXXXXXXXXXXXXXXXXXXTEXXXXXXXXXXXX------ 515
            NKR  G+  +   SS KKPKL                    E                  
Sbjct: 249  NKRPPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDDDDNIPLSQRGKKSQTA 308

Query: 516  -----------VPIAERLKKAAVSAG-TSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 659
                       VPI++R+KK+  S   +S P                             
Sbjct: 309  TSKPKDEDDDNVPISQRIKKSPASVSKSSAPVKKASTVVSPSLKKVNKKSKKVIKKTAYT 368

Query: 660  XXXXLQPSSGDGQKWTTLEHNGVIFPPDYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMK 839
                + P SG+GQKWTTL HNGVIFPP YKPHGVKMLY  QP+ LTPEQEEVATMFAVM 
Sbjct: 369  KSSKVPPGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEEVATMFAVML 428

Query: 840  DTEYATKEKFVENFMNDWRGILGRNHIIKKFELCDFTPIYDWHQAEKEKRKQMTAEEKRV 1019
            DT+Y  K +F ENF +DW+ +LG+NH I+  E CDF PIY+WHQ EKEK+KQMT EEK+ 
Sbjct: 429  DTDYMNKPRFKENFFSDWKKMLGKNHTIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKA 488

Query: 1020 AKEEKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINI 1199
             KEEKL+QEEKYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRP DITINI
Sbjct: 489  LKEEKLQQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPRDITINI 548

Query: 1200 GKGVPIPECPIPGQRWKEVKHDNTVTWLAFWIDPINSKEFKYVFLAASSSLKGQSDKEKY 1379
            GK  PIPECPIPG+RWKEV++DNTVTWLA+W DPIN KEFKYVFLAASS+LKGQSDKEKY
Sbjct: 549  GKDAPIPECPIPGERWKEVRNDNTVTWLAYWNDPINQKEFKYVFLAASSTLKGQSDKEKY 608

Query: 1380 EKARLLKDYIHDIRANYTKDFT-NKDLGKRQIAVATYLIDKLALRAGNEKDDDEADTVGC 1556
            EKARLLKDYIH IRA YTKDFT NKD  K+QIAVATYLIDKLALRAGNEKDDDEADTVGC
Sbjct: 609  EKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGC 668

Query: 1557 CTLKVENVKLVPPNKLEFDFLGKDSIRYLNTVDVELPVYKAIGQFKNGKNDGEDLFDKLD 1736
            CTLKVENV+ VPPN L+FDFLGKDSIRY N V VE  V+KAI QF++GK   EDLFD+LD
Sbjct: 669  CTLKVENVEPVPPNILKFDFLGKDSIRYQNEVQVEPAVFKAIHQFRSGKEGSEDLFDRLD 728

Query: 1737 TSKLNAHLKELMPGLTAKVFRTYNASITLDDQLHKNTXXXXXXXXXXXYNLANKEVAIIC 1916
            TSKLNAHLKELMPGLTAKVFRTYNASITLDD L K T           Y  ANKEVAIIC
Sbjct: 729  TSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSKKTNGGEVAEKVVVYQHANKEVAIIC 788

Query: 1917 NHQRTESKSHTAQMERLQGKILELKKEVDDLKTDLDRAKKGRPPLARFGPDGKQVEKRNL 2096
            NHQRT SKSH+AQM RL  KI ELK  +++LKTDL RAKKG+ PL++ G DGK   KRNL
Sbjct: 789  NHQRTVSKSHSAQMSRLNEKIDELKTALEELKTDLSRAKKGK-PLSK-GADGK--PKRNL 844

Query: 2097 APDAIQRKINKTYERIEKMERD 2162
             P+A++RKI +T  +IEKMERD
Sbjct: 845  NPEALERKIAQTNAKIEKMERD 866


>ref|XP_002317355.1| DNA topoisomerase family protein [Populus trichocarpa]
            gi|222860420|gb|EEE97967.1| DNA topoisomerase family
            protein [Populus trichocarpa]
          Length = 860

 Score =  810 bits (2092), Expect = 0.0
 Identities = 439/721 (60%), Positives = 503/721 (69%), Gaps = 6/721 (0%)
 Frame = +3

Query: 12   KPNVDSEDSDDDKPLSARLLVSTSALQKSNSHNVAKVHSPHLPXXXXXXXXXXXXXRSVE 191
            KP VD +DS+DDKPLS+R   ST+   K  +   A+V   H                   
Sbjct: 115  KPIVDDDDSEDDKPLSSRFKGSTNNANKGVTVP-ARVKDEH------------------- 154

Query: 192  DSEDEAPLSSTIKMKS-AGEPSVK--KEIEEKSLASKAKQNGSIKKETEQLNSPKLLNKR 362
              +DE PLSS    KS AG  S K     E+  L SK + NGS  K+ +Q +S     + 
Sbjct: 155  SDDDEVPLSSRFAAKSNAGSSSCKTISSSEKILLVSKIQLNGSTAKDKQQKSSAVPTKRP 214

Query: 363  LLGDNSTPTHSS-AKKPKLXXXXXXXXXXXXXXXXXXXTEXXXXXXXXXXXXVPIAERLK 539
            +  DN  P++ S AKKPKL                    +            + I++R+K
Sbjct: 215  M--DNKVPSNQSFAKKPKLSDASTTKQVTVKAELKADDDDH-----------LTISQRMK 261

Query: 540  KAAVSAGTS-QPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQPSSGDGQK-WTTL 713
            KA+ S+  S                                    +QP S DGQK W TL
Sbjct: 262  KASSSSNKSLSVKQNVTKVVSFSSKKTTKNNKKQMQNSKYSKSTKVQPGSSDGQKKWKTL 321

Query: 714  EHNGVIFPPDYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKEKFVENFMNDW 893
             HNGVIFPP YKPHGVKMLY G+PVDLTPEQEEVATMFAVMKDTEY  K +F++NF NDW
Sbjct: 322  VHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMFAVMKDTEYVQKPQFLQNFWNDW 381

Query: 894  RGILGRNHIIKKFELCDFTPIYDWHQAEKEKRKQMTAEEKRVAKEEKLKQEEKYMWAVVD 1073
            R +LG+NH+I+K E CDF PIY+WHQ EKEK+KQM+ EEK+  +EEKLKQEE YMWA+V+
Sbjct: 382  RTLLGKNHVIQKLEACDFNPIYEWHQKEKEKKKQMSTEEKKAVREEKLKQEEMYMWAIVN 441

Query: 1074 GVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKGVPIPECPIPGQRWKE 1253
            GVKEKVGNFRVEPPGLFRGRGEHPKMGKLK RIRPSDITINIGK  PIP+CPIPG+RWKE
Sbjct: 442  GVKEKVGNFRVEPPGLFRGRGEHPKMGKLKSRIRPSDITINIGKDAPIPKCPIPGERWKE 501

Query: 1254 VKHDNTVTWLAFWIDPINSKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIHDIRANYT 1433
            VKHDNTVTWLAFW DPIN KEFKYVFLAASSSLKGQSDKEKYEKAR LKDYIH+IR  YT
Sbjct: 502  VKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHNIRTAYT 561

Query: 1434 KDFTNKDLGKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKLVPPNKLEFD 1613
            KDF +KD+ KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NV+ +PPNKL+FD
Sbjct: 562  KDFASKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVANVECIPPNKLKFD 621

Query: 1614 FLGKDSIRYLNTVDVELPVYKAIGQFKNGKNDGEDLFDKLDTSKLNAHLKELMPGLTAKV 1793
            FLGKDSIRY NTV+VELPVYKAI QF+  K   +DLFD LDTSKLNAHLKELMPGLTAKV
Sbjct: 622  FLGKDSIRYENTVEVELPVYKAIRQFQVAKKPTDDLFDSLDTSKLNAHLKELMPGLTAKV 681

Query: 1794 FRTYNASITLDDQLHKNTXXXXXXXXXXXYNLANKEVAIICNHQRTESKSHTAQMERLQG 1973
            FRTYNASITLD++L++ T           YN ANK+VAIICNHQRT SKSH AQM RL  
Sbjct: 682  FRTYNASITLDEKLYEETEDGDVAEKFVIYNQANKQVAIICNHQRTISKSHDAQMSRLTE 741

Query: 1974 KILELKKEVDDLKTDLDRAKKGRPPLARFGPDGKQVEKRNLAPDAIQRKINKTYERIEKM 2153
            K+ ELK  + + KTDLDRAKKG+PPL     DGKQ  KRNL P+AI++KI  T ++IEKM
Sbjct: 742  KLEELKGTLKEFKTDLDRAKKGKPPLK--DADGKQ--KRNLTPEAIEKKIATTNQKIEKM 797

Query: 2154 E 2156
            E
Sbjct: 798  E 798


>gb|AAD08711.1| topoisomerase I [Nicotiana tabacum] gi|14626487|gb|AAK69776.1|
            topoisomerase I [Nicotiana tabacum]
          Length = 852

 Score =  804 bits (2076), Expect = 0.0
 Identities = 434/721 (60%), Positives = 502/721 (69%)
 Frame = +3

Query: 3    PPAKPNVDSEDSDDDKPLSARLLVSTSALQKSNSHNVAKVHSPHLPXXXXXXXXXXXXXR 182
            P ++PN ++EDS+DDKPLSARL   +S L KSNS +  KV                    
Sbjct: 132  PKSEPNDEAEDSEDDKPLSARL---SSGLSKSNSSHANKVLGTSASVQKSRPPKK----- 183

Query: 183  SVEDSEDEAPLSSTIKMKSAGEPSVKKEIEEKSLASKAKQNGSIKKETEQLNSPKLLNKR 362
              EDS+DE PL+S  ++KS    S  K    + +  K +QNG        L S  +L+KR
Sbjct: 184  --EDSDDEIPLASRFQLKSNAGASTSKSSNSEEVKPKIRQNG--------LPSTTVLSKR 233

Query: 363  LLGDNSTPTHSSAKKPKLXXXXXXXXXXXXXXXXXXXTEXXXXXXXXXXXXVPIAERLKK 542
              GD S       K                       TE            VPI++R+KK
Sbjct: 234  PPGDVSLLLRLQLKSLGFLMHLHLFRVSEASVKPEKKTEDDDDD-------VPISQRIKK 286

Query: 543  AAVSAGTSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQPSSGDGQKWTTLEHN 722
            +  SA                                      LQPSSG+GQKWTTL HN
Sbjct: 287  SVASASKLSSAKKATKVVSSSMKTKKKLKKSKYSKSSK-----LQPSSGEGQKWTTLVHN 341

Query: 723  GVIFPPDYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKEKFVENFMNDWRGI 902
            GVIFPP YKPHGVKMLY G+PVDLTPEQEEVATM+AVM DT+Y +K +F ENFMNDWR I
Sbjct: 342  GVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMYAVMLDTDYMSKLQFKENFMNDWRKI 401

Query: 903  LGRNHIIKKFELCDFTPIYDWHQAEKEKRKQMTAEEKRVAKEEKLKQEEKYMWAVVDGVK 1082
            LG+NH+I+  + CDFTPIY+   +EKEK+KQM+ + KR  +EEKLKQEEKYMWA+VDGVK
Sbjct: 402  LGKNHVIQNLDDCDFTPIYERPSSEKEKKKQMSTKRKRPLREEKLKQEEKYMWAIVDGVK 461

Query: 1083 EKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKGVPIPECPIPGQRWKEVKH 1262
            EKVGNFRVEPPGLFRGRGEHPKMGKLK+RIRP+DITINIGKG PIPECPIPG+RWKEV+H
Sbjct: 462  EKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPNDITINIGKGAPIPECPIPGERWKEVRH 521

Query: 1263 DNTVTWLAFWIDPINSKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIHDIRANYTKDF 1442
            DNTVTWLAFW DPIN +EFKYVFLAASSSLKGQSDKEKYEKAR LKDYI  IR+ YTKDF
Sbjct: 522  DNTVTWLAFWNDPINPREFKYVFLAASSSLKGQSDKEKYEKARRLKDYIEGIRSAYTKDF 581

Query: 1443 TNKDLGKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKLVPPNKLEFDFLG 1622
            T+KD  KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENV+ VPPN L+FDFLG
Sbjct: 582  TSKDPVKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKFDFLG 641

Query: 1623 KDSIRYLNTVDVELPVYKAIGQFKNGKNDGEDLFDKLDTSKLNAHLKELMPGLTAKVFRT 1802
            KDSIRY N V V  PV+KAI  F++GK  G+DLFDKLDTSKLNAHLKELMPGLTAKVFRT
Sbjct: 642  KDSIRYQNEVAVYKPVFKAIQLFRSGKKGGDDLFDKLDTSKLNAHLKELMPGLTAKVFRT 701

Query: 1803 YNASITLDDQLHKNTXXXXXXXXXXXYNLANKEVAIICNHQRTESKSHTAQMERLQGKIL 1982
            YNAS+TL+ QL K T           YNLANKEVAIICNHQR+ SKSH+ Q+ +L  KI 
Sbjct: 702  YNASVTLEQQLTKLTQGGELAEKVAVYNLANKEVAIICNHQRSVSKSHSVQISKLNEKID 761

Query: 1983 ELKKEVDDLKTDLDRAKKGRPPLARFGPDGKQVEKRNLAPDAIQRKINKTYERIEKMERD 2162
            ELK  +++ K DL RAKKG+PPL   G DGK   KRNLAP+A+Q+KI++T  +IE +E+ 
Sbjct: 762  ELKALLEEFKVDLARAKKGKPPLK--GADGK--AKRNLAPEALQKKIDQTNVKIENIEKQ 817

Query: 2163 I 2165
            I
Sbjct: 818  I 818


>ref|XP_002266885.1| PREDICTED: DNA topoisomerase 1 [Vitis vinifera]
            gi|296082698|emb|CBI21703.3| unnamed protein product
            [Vitis vinifera]
          Length = 857

 Score =  803 bits (2075), Expect = 0.0
 Identities = 442/724 (61%), Positives = 503/724 (69%), Gaps = 7/724 (0%)
 Frame = +3

Query: 12   KPNVDSEDSDDDKPLSARLLVSTSALQKSNSHNVAKVHSPHLPXXXXXXXXXXXXXRSVE 191
            K  +DS DS+DDKPLS RL  S     K +S+NV                         +
Sbjct: 108  KAELDS-DSEDDKPLSVRLS-SGLPKGKGSSNNVG----------LGRGGVGGVKKEEDD 155

Query: 192  DSEDEAPLSSTIKMKSAGEPSVKKEIEEKSLASKAKQNGSIKKETEQLNSPKLLNKR--L 365
            D +D+ PLSS  ++KS          E+K L  K  QNG   K  +   SP +LNK+  L
Sbjct: 156  DDDDKIPLSSKFQLKSD---------EKKPLPLKVNQNGGTDKRDK---SPTVLNKKRPL 203

Query: 366  LGDNSTPTHSS-AKKPKLXXXXXXXXXXXXXXXXXXXTEXXXXXXXXXXXXVPIAERLKK 542
             G NS+   SS  KKPK+                    +            +PI++R+KK
Sbjct: 204  DGVNSSLGQSSLVKKPKISGQSAQPFKVTHAT-----AKAEPKVEDDDDDDMPISQRMKK 258

Query: 543  AAVSAGT----SQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQPSSGDGQKWTT 710
            +  S+G     ++                                  + PSSG+GQKWTT
Sbjct: 259  SGASSGNKPVPAKQKVTKVVSSTSFKKTKDIKSKKMEKNSKYSKSTKVPPSSGEGQKWTT 318

Query: 711  LEHNGVIFPPDYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKEKFVENFMND 890
            L HNGVIFPP YKPHGVKMLY G+PVDLTPEQEEVATMFAVM DT+Y  KEKF ENFM D
Sbjct: 319  LVHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMFAVMLDTDYMQKEKFKENFMAD 378

Query: 891  WRGILGRNHIIKKFELCDFTPIYDWHQAEKEKRKQMTAEEKRVAKEEKLKQEEKYMWAVV 1070
            WR ILG+NH+I++ + CDFTPIY+WHQ EKEK+KQM+ EEK+  KEEKLK EEKYMWA+V
Sbjct: 379  WRKILGKNHVIQRLDDCDFTPIYEWHQEEKEKKKQMSTEEKKTLKEEKLKLEEKYMWAIV 438

Query: 1071 DGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKGVPIPECPIPGQRWK 1250
            DGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI PSDITINIGK   IPECPIPG+ WK
Sbjct: 439  DGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIHPSDITINIGKNSQIPECPIPGESWK 498

Query: 1251 EVKHDNTVTWLAFWIDPINSKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIHDIRANY 1430
            EVKHDNTVTWLAFW DPIN KEFKYVFLAASSSLKGQSDKEKYEKAR LK+YI DIRA Y
Sbjct: 499  EVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKNYIKDIRATY 558

Query: 1431 TKDFTNKDLGKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKLVPPNKLEF 1610
            TKDF +KD+ KRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENV   PPN L+F
Sbjct: 559  TKDFVSKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVIPEPPNSLQF 618

Query: 1611 DFLGKDSIRYLNTVDVELPVYKAIGQFKNGKNDGEDLFDKLDTSKLNAHLKELMPGLTAK 1790
            DFLGKDSIRY  TV+VELPVYKAI QF+ GK+  +DLFDKLDTSKLNAHLKELMPGLTAK
Sbjct: 619  DFLGKDSIRYEKTVEVELPVYKAIEQFRVGKSGSDDLFDKLDTSKLNAHLKELMPGLTAK 678

Query: 1791 VFRTYNASITLDDQLHKNTXXXXXXXXXXXYNLANKEVAIICNHQRTESKSHTAQMERLQ 1970
            VFRTYNASITLD+ L+K+T           Y  ANKEVAIICNHQRT SKSHTAQM RL 
Sbjct: 679  VFRTYNASITLDEMLNKDTKEGDVAQKVVVYQHANKEVAIICNHQRTISKSHTAQMTRLT 738

Query: 1971 GKILELKKEVDDLKTDLDRAKKGRPPLARFGPDGKQVEKRNLAPDAIQRKINKTYERIEK 2150
             KI E+K  ++ LKTDL RAKKG+PPL     DGK   +RNL P+A++RKI +T  +IEK
Sbjct: 739  EKIDEMKGVLNGLKTDLARAKKGKPPLK--DADGK---RRNLTPEALERKIAQTNAKIEK 793

Query: 2151 MERD 2162
            MERD
Sbjct: 794  MERD 797


>ref|XP_006856202.1| hypothetical protein AMTR_s00059p00193620 [Amborella trichopoda]
            gi|548860061|gb|ERN17669.1| hypothetical protein
            AMTR_s00059p00193620 [Amborella trichopoda]
          Length = 884

 Score =  801 bits (2068), Expect = 0.0
 Identities = 422/726 (58%), Positives = 500/726 (68%), Gaps = 8/726 (1%)
 Frame = +3

Query: 3    PPAKPNVDSEDSDDDKPLSARLLVSTSALQKSNSHNVAKVHSPHLPXXXXXXXXXXXXXR 182
            P ++PN+ SEDSDDDKPL++R+    + ++  +      +    +P             R
Sbjct: 120  PSSEPNMKSEDSDDDKPLNSRVAAVANTVKNKSPGPNLPLSCSAMPVKTIVKSPVNVVKR 179

Query: 183  SVEDSEDEAPLSSTIKMKSAG--------EPSVKKEIEEKSLASKAKQNGSIKKETEQLN 338
            S +DS+DE PLS     KS+         +P+     EEK LAS  ++NGS KK      
Sbjct: 180  SPDDSDDEKPLSQKFPRKSSNGAVAGTSIKPTYDDSDEEKPLASNFQRNGSSKKNLNG-E 238

Query: 339  SPKLLNKRLLGDNSTPTHSSAKKPKLXXXXXXXXXXXXXXXXXXXTEXXXXXXXXXXXXV 518
             P  +N+ L    +  +   AKKPK                     +            +
Sbjct: 239  LPLKVNQILKKRPAEESKVLAKKPK----PSADPSSSSRVKVEVTVKAEKSERGDDEDDL 294

Query: 519  PIAERLKKAAVSAGTSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQPSSGDGQ 698
             I++R+KK +  +G +                                     P SGDGQ
Sbjct: 295  SISQRMKKFSSVSGQASAKKIKTKVVSSSFKKTGKNSKKEMKKIKGSKSAKGPPGSGDGQ 354

Query: 699  KWTTLEHNGVIFPPDYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKEKFVEN 878
            KW+TLEHNGVIFP  YKPHGVKMLYNGQPVDLTPE+EEVATMFAVMKDTEY TK KF++N
Sbjct: 355  KWSTLEHNGVIFPSPYKPHGVKMLYNGQPVDLTPEKEEVATMFAVMKDTEYETKPKFIDN 414

Query: 879  FMNDWRGILGRNHIIKKFELCDFTPIYDWHQAEKEKRKQMTAEEKRVAKEEKLKQEEKYM 1058
            FMNDWR ILG+NH+IKKFELCDFTPIY+WH  EKEK+KQM+AEEK+  KEEK K EEKYM
Sbjct: 415  FMNDWRVILGKNHVIKKFELCDFTPIYEWHLKEKEKKKQMSAEEKKALKEEKAKLEEKYM 474

Query: 1059 WAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKGVPIPECPIPG 1238
            WA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI P DITINIGK  PIPECPI G
Sbjct: 475  WAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIFPKDITINIGKNAPIPECPISG 534

Query: 1239 QRWKEVKHDNTVTWLAFWIDPINSKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIHDI 1418
            QRWKE+KHDNTVTWLAFW DPIN KE KYVFLAASSSLKGQSDKEKYEKARLLKDYI  I
Sbjct: 535  QRWKEIKHDNTVTWLAFWNDPINPKELKYVFLAASSSLKGQSDKEKYEKARLLKDYIDSI 594

Query: 1419 RANYTKDFTNKDLGKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKLVPPN 1598
            R  YTK F +KD+ KRQ A+ATYLID+LALRAGNEKDDDEADTVGCCTLKVENV L+P +
Sbjct: 595  RETYTKHFNSKDIMKRQTAIATYLIDRLALRAGNEKDDDEADTVGCCTLKVENVTLLPLS 654

Query: 1599 KLEFDFLGKDSIRYLNTVDVELPVYKAIGQFKNGKNDGEDLFDKLDTSKLNAHLKELMPG 1778
             L+FDFLGKDSIRY NTV+V  PVYKAIG F++GK +G+DLFDKLDTSKLNAHLKELMPG
Sbjct: 655  SLQFDFLGKDSIRYFNTVEVLPPVYKAIGDFRSGKKEGDDLFDKLDTSKLNAHLKELMPG 714

Query: 1779 LTAKVFRTYNASITLDDQLHKNTXXXXXXXXXXXYNLANKEVAIICNHQRTESKSHTAQM 1958
            LTAKVFRTYNAS TL D+L ++T           Y  ANKEVAI+CNHQR+ SKSH+  M
Sbjct: 715  LTAKVFRTYNASETL-DRLLQDTTGSNPTEKIADYQRANKEVAILCNHQRSVSKSHSTHM 773

Query: 1959 ERLQGKILELKKEVDDLKTDLDRAKKGRPPLARFGPDGKQVEKRNLAPDAIQRKINKTYE 2138
            E+L  K+ EL+K + +L+ DL RAKKG+PPL     DGK   K+  +P+ + +KI +TY+
Sbjct: 774  EKLGEKMAELEKVLKELQIDLSRAKKGKPPLK--AADGK--PKKKQSPETLDKKITQTYD 829

Query: 2139 RIEKME 2156
            +IEKM+
Sbjct: 830  KIEKMK 835


>ref|XP_006452480.1| hypothetical protein CICLE_v10007398mg [Citrus clementina]
            gi|557555706|gb|ESR65720.1| hypothetical protein
            CICLE_v10007398mg [Citrus clementina]
          Length = 824

 Score =  800 bits (2066), Expect = 0.0
 Identities = 430/699 (61%), Positives = 491/699 (70%), Gaps = 4/699 (0%)
 Frame = +3

Query: 24   DSEDSDDDKPLSARLLVSTSALQKSNSHNVAKVHSPHLPXXXXXXXXXXXXXRSVEDSED 203
            D  DS+DDKPLSARL  +T  + +    + A      +                 EDS+D
Sbjct: 149  DDNDSEDDKPLSARLKGNTKNVNQGIGASKADAAISEV-----------NVKTDPEDSDD 197

Query: 204  EAPLSSTIKMKSAGEPSVKK--EIEEKSLASKAKQNGSIKKETEQLNSPKLLNKRLLGDN 377
            E PLSS     +AG    K     E+K LASK +QNGS  +ET+Q +S   + KR L   
Sbjct: 198  EVPLSSRFPKSNAGTSGAKPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPV-KRPLQKA 256

Query: 378  STPTHSSAKKPKLXXXXXXXXXXXXXXXXXXXTEXXXXXXXXXXXXVPIAERLKKAAVSA 557
            S+   SSAKKPK+                    +            +PI++R+K +A S 
Sbjct: 257  SSSGASSAKKPKVSDTSKEVKVKQVTVKVEKKADDDDH--------IPISQRMKNSAPSV 308

Query: 558  GTSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LQPSSGDGQK-WTTLEHNGVI 731
              S                                    + P SGDGQK WTTL HNGVI
Sbjct: 309  KKSVTNTAKATKSVSSSSKKINKKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVI 368

Query: 732  FPPDYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKDTEYATKEKFVENFMNDWRGILGR 911
            FPP Y PHGVKMLY G+ V+LTPEQEEVATMFAVM DT+Y  K KF ENF NDWR +LG+
Sbjct: 369  FPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGK 428

Query: 912  NHIIKKFELCDFTPIYDWHQAEKEKRKQMTAEEKRVAKEEKLKQEEKYMWAVVDGVKEKV 1091
            NH+I+  E CDF PIYDWHQ +KEK+KQM++EEK+  KEEKLKQEEKYMWA+VDGVKEKV
Sbjct: 429  NHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEKLKQEEKYMWAIVDGVKEKV 488

Query: 1092 GNFRVEPPGLFRGRGEHPKMGKLKKRIRPSDITINIGKGVPIPECPIPGQRWKEVKHDNT 1271
            GNFRVEPPGLFRGRGEHPKMGKLKKRI+PSDITINIGK VPIPECPIPG+ WKEVKHDNT
Sbjct: 489  GNFRVEPPGLFRGRGEHPKMGKLKKRIQPSDITINIGKDVPIPECPIPGESWKEVKHDNT 548

Query: 1272 VTWLAFWIDPINSKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIHDIRANYTKDFTNK 1451
            VTWLAFW DPIN KEFKYVFLAASSSLKGQSD+EKYEKAR LKDYIH IRA YTKDF ++
Sbjct: 549  VTWLAFWNDPINPKEFKYVFLAASSSLKGQSDREKYEKARKLKDYIHSIRAAYTKDFVSR 608

Query: 1452 DLGKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKLVPPNKLEFDFLGKDS 1631
            D  +RQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NV+ +PPNKL+FDFLGKDS
Sbjct: 609  DGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDS 668

Query: 1632 IRYLNTVDVELPVYKAIGQFKNGKNDGEDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNA 1811
            I+Y+NTV+VELPVYKAIGQF+ GK   +DLFDKLDT+KLNAHLKELMPGLTAKVFRTYNA
Sbjct: 669  IQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNA 728

Query: 1812 SITLDDQLHKNTXXXXXXXXXXXYNLANKEVAIICNHQRTESKSHTAQMERLQGKILELK 1991
            SITLD  L+K T           Y  ANKEVAIICNHQRT SK+H+AQM RL  KI +LK
Sbjct: 729  SITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTEKIEDLK 788

Query: 1992 KEVDDLKTDLDRAKKGRPPLARFGPDGKQVEKRNLAPDA 2108
              + DL+ DLDRAKKG+PPL +   DGK+  KRNLAP+A
Sbjct: 789  GVLKDLRVDLDRAKKGKPPLMK-DSDGKR--KRNLAPEA 824