BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver25_contig00003927
         (4694 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...  1268   0.0  
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...  1211   0.0  
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]    1186   0.0  
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]             1149   0.0  
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]             1145   0.0  
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]       1143   0.0  
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...  1140   0.0  
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...  1140   0.0  
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]          1138   0.0  
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]             1137   0.0  
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...  1136   0.0  
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]             1135   0.0  
gb|AFB73911.1| polyprotein [Citrus sinensis]                         1134   0.0  
gb|AFB73912.1| polyprotein [Citrus sinensis]                         1130   0.0  
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                 1127   0.0  
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...  1116   0.0  
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]    1105   0.0  
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...  1103   0.0  
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]    1091   0.0  
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                            1084   0.0  

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 1268 bits (3282), Expect = 0.0
 Identities = 669/1351 (49%), Positives = 892/1351 (66%), Gaps = 23/1351 (1%)
 Frame = +3

Query: 114  IIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWT---DEKWADLDLMACSTI 284
            I KF G+N+F+ WQ       + M+ +   +   A L KD       + A L+  A STI
Sbjct: 8    IDKFTGRNSFSLWQ-------IKMRALLKQQGFWAPLSKDKNAVVTPEMAILEEKAHSTI 60

Query: 285  RLCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHIN 464
             LCL+ D+    S E +A  LW KLE LY+ K LT++L LK+RL   RM+ G  + +H+ 
Sbjct: 61   MLCLADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLREHLE 120

Query: 465  EFNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVV 644
            + N +  +L NI V I D D ++ILL SLP S++ FV   + GK       D +  ++V 
Sbjct: 121  QLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGK-------DTVSLEEVR 173

Query: 645  SALQAKALRKQE--FSDEAQVEGLFVDXXXXXXXXXXXXXXXXXX---DIECYYCRKPGH 809
            SAL ++ LR +    S + Q  GLF                       D  C YC++ GH
Sbjct: 174  SALHSRELRHKANGTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGAKPDDVCNYCKEKGH 233

Query: 810  IRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLNDGWML 989
             + DC K      K+++S+ ++V A+VAE     E+ +       L     ++ +D W+L
Sbjct: 234  WKFDCPK------KKKQSEKQSVSAAVAEEDTNSEEDIA------LVADEHTHHSDVWVL 281

Query: 990  DSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLSEVRHV 1166
            DSGASYH+CP ++ FTTY +V+GG++ M NS+ CK VG G++++R+H G   TL+EVRHV
Sbjct: 282  DSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHV 341

Query: 1167 PDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGERHGNLYFLRGDIVCGGAMVS 1346
            P + K+LISL +L+S G+ ++ + G L+V+   +L + G   G LYFL+G  V G A V+
Sbjct: 342  PLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSAHVA 401

Query: 1347 QSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGKQCRSSFG 1526
             S +  Q + T+LWH+RLGHM E+GM +LS + LL G K   L+FCEHC+FGK  R+ F 
Sbjct: 402  SS-EFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFP 460

Query: 1527 TAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNEVTEVFKK 1706
             A+H T+G LDYIHSD WGP R  S GG R+FV+ IDD+SR  W+Y MKHK+E  + FK+
Sbjct: 461  KAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKE 520

Query: 1707 WKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGVAERMNRT 1886
            WK ++E Q G+ +K++R+DNG E+      +FC+++GI RH TV+ TPQQNGVAERMN+T
Sbjct: 521  WKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQT 580

Query: 1887 LLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVNYSNLRVF 2066
            LLERARCMLSNA LD+ +WAEAV+TACYL+NR P T I+CK+PME+W+G   +YSNL+ F
Sbjct: 581  LLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAF 640

Query: 2067 GCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNERAMLDSKK 2246
            GC AY+HV E KL  RAKK +F+GY  GVKG+R+W P   + I+SR+V F+E  +L +  
Sbjct: 641  GCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESPLLRTIV 700

Query: 2247 STDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXXXXSTQQQI- 2423
                 S+              QVE +V  + +                      T+  I 
Sbjct: 701  KPTTTSETGSLDK--------QVEFQVIQNES---------DLKEPEEEDQEPQTETDIP 743

Query: 2424 ENIPS-----LTSQRERR----PPTRYGFDEYASYALSVFED----EPFTFEEAMSTTHA 2564
            E++PS     +   R RR    PPTRYGF++   YAL V E+    EP T++EA+ ++ +
Sbjct: 744  ESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDS 803

Query: 2565 IEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIVSGVRYKARL 2744
             +W  AM +EM+SLHKN TW+LV  P GRK I CKWV+  K+GI  ++G    V+YKAR+
Sbjct: 804  EKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEG----VKYKARV 859

Query: 2745 VAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYM 2924
            VA+G+ QREGVDYNE+FSPVV+HTSIRVLLA VA  +LELEQLDVKTAFLHG LEE+IYM
Sbjct: 860  VARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYM 919

Query: 2925 SQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFP 3104
            +QP G++V GKE++VC+L+KSLYGLKQSPRQWYKRFD++M++  YTRS YD CVY+ +  
Sbjct: 920  TQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLN 979

Query: 3105 GGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKL 3284
              SF+YL+LYVDDMLIAAK K +I  LK  LS EFEMKDLG A+KILGMEI RDR + KL
Sbjct: 980  DDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKL 1039

Query: 3285 CLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSL 3464
             L+Q+SY++KVL RFGM +SK I  P  + + L+    P + EE E+MS+VPYA+AVGSL
Sbjct: 1040 FLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSL 1099

Query: 3465 MYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVCG 3644
            MYAMVCTRPD A AV +VSR+M  PGR HW AVK I RYL GT D+GL++  +    V G
Sbjct: 1100 MYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTG 1159

Query: 3645 FVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALWL 3824
            + DSDYAGD D  RS +GY FTL G+ +SW++ LQP V LSTTEAEY+A+TEA KE +WL
Sbjct: 1160 YSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMALTEAAKEGIWL 1219

Query: 3825 RGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKV 4004
            +GLV DLG+      V CDS SAI LAK+QV+H RTKHID+RYH +R       +++ KV
Sbjct: 1220 KGLVSDLGLHHDQATVYCDSLSAICLAKDQVHHERTKHIDVRYHFLR---SEKRIKVKKV 1276

Query: 4005 DTEDNPADMLTKVVPKVKFERCLSLINTARC 4097
             T DNPADM TK VP+ KF+ CL L+N   C
Sbjct: 1277 GTADNPADMFTKPVPQSKFQHCLDLLNIRSC 1307


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score = 1211 bits (3134), Expect = 0.0
 Identities = 656/1349 (48%), Positives = 856/1349 (63%), Gaps = 24/1349 (1%)
 Frame = +3

Query: 108  FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 287
            +D+        F+ WQ  ++ +L       A+         DW++++    D  A S I 
Sbjct: 213  YDLPLLYRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRT-HDWSNDE-KKRDRKAMSYIH 270

Query: 288  LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 467
            L LS +I      E  A  LW KLE++ + KDLTS+++LK+ L   ++    S+MDH++ 
Sbjct: 271  LHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDHLSA 330

Query: 468  FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 647
            F +I +DL ++ V   + D  +ILLCSLP SY  F D +L  +       D L   +V  
Sbjct: 331  FKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSR-------DTLTLKEVYD 383

Query: 648  ALQAKALRKQEFSDE---AQVEGLFVDXXXXXXXXXXXXXXXXXXDIE-----------C 785
            AL  K   K+    E   +Q EGL V                                 C
Sbjct: 384  ALHVKEKMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSC 443

Query: 786  YYCRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKS 965
             YC++ GH   +C KL  +D++  K   K       EG  A+        E ++     +
Sbjct: 444  KYCKRDGHDIFECWKLHDKDKRTGKYVPKG--KKEEEGKAAVVTDEKSDAELLVAYAGCA 501

Query: 966  YLNDGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVIT 1142
              +D W+L++   YHMCP++D F TY  V  GTV+MG+   C+  G+GTVQ++   G I 
Sbjct: 502  QTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIR 561

Query: 1143 TLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGE-RHGNLYFLRGD 1319
            TLS+VRH+P+L++SLISL  L+  GYKY+   G LKV     + M  + +  NLY LRG 
Sbjct: 562  TLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGT 621

Query: 1320 IVCGG-AMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCI 1496
             + G  A VS S+     ++T LWHMRLGHM+E G++ LS +GLL G+   KL FCEHCI
Sbjct: 622  TILGNVAAVSDSLSNS--DATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCI 679

Query: 1497 FGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKH 1676
            FGK  R  F T+ H T+G+LDY+HSD+WGP+R  S GG R+ +T +DD+SR+VW Y +KH
Sbjct: 680  FGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKH 739

Query: 1677 KNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQ 1856
            K +  +VFK+WKTMVE+Q  R VK +R+DNG E+     K +C+ +GIVRH+TV  TPQQ
Sbjct: 740  KYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQ 799

Query: 1857 NGVAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGN 2036
            NGVAERMNRT++ +ARC+LSNA L K +WAEAV+TACYL+NRSPS AI  K+P+EVW+G+
Sbjct: 800  NGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGS 859

Query: 2037 LVNYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTF 2216
              NYS+LRVFGC AY HV   KL  RA K IFLGYP GVKGY+LWCPE  K +ISR+V F
Sbjct: 860  PANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVF 919

Query: 2217 NERAMLDSKKSTDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXX 2396
            +E  ML  K ST+   +             +QVE  + S                     
Sbjct: 920  HESVMLHDKPSTNVPVE-------SQEKASVQVEHLISSGHAPEKEDVAINQDEPVIEDS 972

Query: 2397 XXXSTQQQIE-NIPSLTSQRERRPPTRYGFD-EYASYALSVFED-----EPFTFEEAMST 2555
                 QQ  + +I     +R  +PP RY  +    +YALSV E+     EP T+ EA+ +
Sbjct: 973  NSSIVQQSPKRSIAKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVS 1032

Query: 2556 THAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIVSGVRYK 2735
                 W TAM +EM+SL KNHTWELVKLPK +K I CKW++  K+GI  S       RYK
Sbjct: 1033 DDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSS----DEARYK 1088

Query: 2736 ARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEED 2915
            ARL+AKGY+Q  G+D+N+VFSPVVKH+SIR LL+ VA  D ELEQ+DVKTAFLHG LEED
Sbjct: 1089 ARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEED 1148

Query: 2916 IYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFK 3095
            IYM QP G+ V GKE+ VCRL+KSLYGLKQSPRQWYKRFD+FML QK+ RS YD CVY K
Sbjct: 1149 IYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLK 1208

Query: 3096 KFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSK 3275
               G S +YLLLYVDDMLIAAK KSEI  LK QLS EFEMKDLG AKKILGMEITR R  
Sbjct: 1209 VVDG-SAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHS 1267

Query: 3276 GKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAV 3455
             KL L+QK Y+EKVLRRF MH++K +S P+ +  +LS  LCP +  ++E+MS+VPY++AV
Sbjct: 1268 FKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSAV 1327

Query: 3456 GSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLK 3635
            GSLMYAMVC+RPD + A+ +VSRYMANPG+ HW AV+ I RYL GT    L F + +   
Sbjct: 1328 GSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSRD-G 1386

Query: 3636 VCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEA 3815
            + G+VDSD+AGD D+ RS +GY FT+ G  +SW++ LQ  VALSTTEAEY+A++EA KEA
Sbjct: 1387 LVGYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKEA 1446

Query: 3816 LWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQL 3995
            +WLRGL   L  +   + + CDSQSAI L K+Q++H RTKHID+RYH +R ++  G V++
Sbjct: 1447 IWLRGLYTVLCAVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHFIRGLIAEGDVKI 1506

Query: 3996 LKVDTEDNPADMLTKVVPKVKFERCLSLI 4082
             K+   DNPADM+TK VP  KFE C SL+
Sbjct: 1507 CKISIHDNPADMMTKPVPATKFELCSSLV 1535


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score = 1186 bits (3067), Expect = 0.0
 Identities = 633/1261 (50%), Positives = 821/1261 (65%), Gaps = 24/1261 (1%)
 Frame = +3

Query: 372  LQKDLTSELYLKRRLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDTDKSMILLCSL 551
            + KDLTS+++LK++L   ++    S+MDH++ F +I +DL ++ V   + D  +ILLCSL
Sbjct: 1    MTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEEDLGLILLCSL 60

Query: 552  PPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVSALQAKALRKQEFSDE---AQVEGLFVDX 722
            P SY  F D +L  +       D L   +V  AL AK   K+    E   +Q EGL V  
Sbjct: 61   PSSYANFRDTILYSR-------DTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRG 113

Query: 723  XXXXXXXXXXXXXXXXXDIE-----------CYYCRKPGHIRADCLKLKARDEKREKSDS 869
                                           C YC++ GH  ++C KL+ +D++  K   
Sbjct: 114  RQQEKNTNNKSRDKSSSIYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTRKYIP 173

Query: 870  KNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHMCPSKDCFTTYRE 1049
            K       EG  A+        E ++     +  +D W+LD+  +YHMCP++D F TY  
Sbjct: 174  KG--KKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEA 231

Query: 1050 VNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVLESLGYKY 1226
            V GGTV+MG+   C+  G+GTVQ++   G I TL +VRH+P+L++SLISL  L+  GYKY
Sbjct: 232  VQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKY 291

Query: 1227 AAEYGFLKVFYNGSLKMTGE-RHGNLYFLRGDIVCGG-AMVSQSIDEKQVESTRLWHMRL 1400
            +   G LKV     + M  + ++ NLY LRG  + G  A VS S+     ++T LWHMRL
Sbjct: 292  SGGDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSNS--DATNLWHMRL 349

Query: 1401 GHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQGMLDYIHSDVW 1580
            GHMSE G++ LS +GLL G+   KL FCEHCIFGK  R  F T+ H T+G+LDY+HSD+W
Sbjct: 350  GHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLW 409

Query: 1581 GPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEKQLGRVVKKIRS 1760
            GP+R  S GGAR+ +T +DD+SR+VW Y +KHK +  +VFK+WKTMVE+Q  R VK +R+
Sbjct: 410  GPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 469

Query: 1761 DNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGVAERMNRTLLERARCMLSNASLDKIW 1940
            DNG E      K +C+ +GIVRH+TV  TPQQNGVAERMNRT++ +ARCMLSNASL K +
Sbjct: 470  DNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQF 529

Query: 1941 WAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAYFHVKEDKLGVRAK 2120
            WAEAV+TACYL+NRSPS AI  K+P+EVW+G+  NYS+LRVFGC AY HV   KL  R  
Sbjct: 530  WAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRVI 589

Query: 2121 KAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNERAMLDSKKSTDWDSQIXXXXXXXXXX 2300
            K IFLGY  GVKGY+LWCPE  K +ISR+V F+E  ML  K ST+               
Sbjct: 590  KCIFLGYLSGVKGYKLWCPETKKVVISRNVVFHESIMLHDKPSTN-------VPVESQEK 642

Query: 2301 XXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXXXXSTQQQIE-NIPSLTSQRERRPPTRY 2477
              +QVE  + S                          QQ  + +I     +R  +PP RY
Sbjct: 643  VSVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVQQSPKRSIAKDRPKRNTKPPRRY 702

Query: 2478 GFD-EYASYALSVFED-----EPFTFEEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKL 2639
              +    +YALSV E+     EP T+ +A+ +     W TAM +EM+SL KNH+WEL KL
Sbjct: 703  IEEANIVAYALSVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHSWELEKL 762

Query: 2640 PKGRKKIGCKWVYTVKDGIPDSKGIVSGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTS 2819
            PK +K I CKW++  K+G+  S       RYKARLVAKGY+Q  G+D+N+VFSPVVKH+S
Sbjct: 763  PKEKKPIRCKWIFKRKEGMSPS----DEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSS 818

Query: 2820 IRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGL 2999
            IR LL+ VA  D ELEQ+DVKTAFLHG LEEDIYM QP G+ V GKE+ VCRL+KSLYGL
Sbjct: 819  IRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGL 878

Query: 3000 KQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEID 3179
            KQSPRQWYKRFD+FML QK+ RS YD CVY  K   GS +YLLLYVDDMLIAAK KSEI 
Sbjct: 879  KQSPRQWYKRFDSFMLSQKFRRSNYDSCVYL-KVVDGSAIYLLLYVDDMLIAAKDKSEIA 937

Query: 3180 VLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISV 3359
             LK QLS EFEMKDLG AKKILGMEITR+R  GKL L+QK Y+EKVL RF MH++K +S 
Sbjct: 938  KLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKCYIEKVLHRFNMHDAKLVST 997

Query: 3360 PIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANP 3539
             + +  +LS  LCP +  ++E+MS+VPY++AV SLMYAMVC+RPD + A+ +VSRYMANP
Sbjct: 998  LLAAHFRLSSDLCPQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHALSVVSRYMANP 1057

Query: 3540 GRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSG 3719
            G+ HW AV+ I RYL GT    L F +  S  + G+VDSD+AGD D+ RS +GY FT+ G
Sbjct: 1058 GKEHWKAVQWIFRYLRGTSSACLQFGR-SSDGLVGYVDSDFAGDLDRRRSLTGYVFTVGG 1116

Query: 3720 APISWRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIH 3899
              +SW++ LQ  VALSTTEAEY+A++EA KE +WLRGL  +L  +   + + CDSQSAI 
Sbjct: 1117 CAVSWKASLQATVALSTTEAEYMAISEACKEVIWLRGLYTELCGVTSCINIFCDSQSAIC 1176

Query: 3900 LAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSL 4079
            L K+Q++H RTKHID+RYH +R V+  G V++ K+ T DNP DM+TK VP  KFE C SL
Sbjct: 1177 LTKDQMFHERTKHIDLRYHFIRGVIAEGDVKVCKISTHDNPVDMMTKPVPATKFELCSSL 1236

Query: 4080 I 4082
            +
Sbjct: 1237 V 1237


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 1149 bits (2971), Expect = 0.0
 Identities = 623/1342 (46%), Positives = 845/1342 (62%), Gaps = 18/1342 (1%)
 Frame = +3

Query: 108  FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 287
            F+I KFNG+N F+ W+  ++ IL     + AI  +PA    D TDEKW ++D  A + + 
Sbjct: 5    FEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGRPA----DITDEKWKEMDDNAVANLH 59

Query: 288  LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 467
            L ++  +  + + + +AK +W+ L KLY  K L + ++LKRRL+  RM    S+ DHIN 
Sbjct: 60   LAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINT 119

Query: 468  FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 647
             N + S L+     I++ +++ +LL SLP SYD  +  + +         D L FDDV  
Sbjct: 120  LNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNI-----ADTLHFDDVAG 174

Query: 648  AL---QAKALRKQEFSDEAQ-------VEGLFVDXXXXXXXXXXXXXXXXXXDIECYYCR 797
            A+   +++   K+E S+ ++         G   +                  +I+CY C 
Sbjct: 175  AILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCG 234

Query: 798  KPGHIRADCLKLKARDEKR-EKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLN 974
              GH++ +C  +K   EK  E S S+  VAS ++  E L      + E   +   +  LN
Sbjct: 235  MKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEIL------YSEAATSSKGERRLN 288

Query: 975  DGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLS 1151
            D W++DSGA++HM P +D F +Y  ++ G+V MGN +A +  GVGT++++ H G +  + 
Sbjct: 289  DVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 1152 EVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGER-HGNLYFLRGDIVC 1328
             VRHV  L+K+L+S+G L+ LG K   E G LKV     + M  E+   NLY L GD + 
Sbjct: 349  GVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQ 408

Query: 1329 -GGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGK 1505
               A V+ +  E   E+T +WH RLGHMSE+G+ VL  + LL G KT  L FCEHC+  K
Sbjct: 409  EADASVAAASQE---ETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISK 465

Query: 1506 QCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNE 1685
            Q R  F      ++ +LD IHSDVW  S  +S GGAR+FV+FIDD+SRR+W+Y +K K++
Sbjct: 466  QHRLKFARVTTRSKHILDLIHSDVW-ESPELSLGGARYFVSFIDDYSRRLWVYPIKKKSD 524

Query: 1686 VTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGV 1865
            V  VFK +K  +E + G+ +K +R+DNGGEY++     FC+++GIVR FTV  TPQQNGV
Sbjct: 525  VFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGV 584

Query: 1866 AERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVN 2045
            AERMNRTLLER R ML  A + K +WAEAV TACY++NRSPSTAI  K+PME+W G  V+
Sbjct: 585  AERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVD 644

Query: 2046 YSNLRVFGCPAYFHVKED---KLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTF 2216
            YS+L VFGCP Y         KL  +++K IFLGY   VKGYRLW P   K ++SRDV F
Sbjct: 645  YSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVF 704

Query: 2217 NERAMLDSKKSTDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXX 2396
             E   L SK+  D  S+             +Q+E++   S +                  
Sbjct: 705  AENE-LQSKQKNDSTSK---------ETAIVQMEEKSKESDSSEAEPVHEEQEPDDVNNG 754

Query: 2397 XXXSTQQQIENIPSLTSQRERRPPTRYGFDEYASYALSVFEDEPFTFEEAMSTTHAIEWK 2576
               ST+Q  +  PS  S         Y    + +Y L   E EP TF EA++ + A +W 
Sbjct: 755  VRRSTRQTQK--PSWQSD--------YVMTSHDAYCLITEEGEPSTFHEALNGSDASQWM 804

Query: 2577 TAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVK-DGIPDSKGIVSGVRYKARLVAK 2753
            TAM EEM++LH+N TWELV+LPKGRK IG KWVY +K DG    +      RY+ARLV K
Sbjct: 805  TAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVE------RYRARLVVK 858

Query: 2754 GYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQP 2933
            GYAQ+EG+D+NE+FSPVV+ T+IRV+LA  A  DL LEQLDVKTAFLHG LEE+IYM QP
Sbjct: 859  GYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQP 918

Query: 2934 IGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGS 3113
             G++  GKE+ VCRL KSLYGLKQ+PR WYKRFD+F++   Y+R   D C Y+K+F G  
Sbjct: 919  EGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGND 978

Query: 3114 FVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLT 3293
            F+ LLLYVDDML+   +K  +  LK QL+ EF+MKDLGPA KILGM+I RDR   K+ L+
Sbjct: 979  FIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLS 1038

Query: 3294 QKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYA 3473
            QK+YL KVLRRF M + K IS P+P   KLS  + P+   E   MS+VPYA+AVGSLMYA
Sbjct: 1039 QKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYA 1098

Query: 3474 MVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVD 3653
            M+CTRPD AQAVG+VSR+MA+PG+ HW AVK I+RY+ GT  + + F   + L V G+VD
Sbjct: 1099 MICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSE-LTVRGYVD 1157

Query: 3654 SDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGL 3833
            SD+AGD DK +ST+GY FTL+G  +SW S LQ +VALSTTEAEY+A T+A KEA+W++ L
Sbjct: 1158 SDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRL 1217

Query: 3834 VKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTE 4013
            +++LG  Q  + V CDSQSA+H+A+N  +H+RTKHI ++YH VREVV+ G V + K+ T 
Sbjct: 1218 MEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTN 1277

Query: 4014 DNPADMLTKVVPKVKFERCLSL 4079
            DN AD +TK +   KF  C SL
Sbjct: 1278 DNLADAMTKSINTDKFIWCRSL 1299


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 1145 bits (2962), Expect = 0.0
 Identities = 618/1341 (46%), Positives = 842/1341 (62%), Gaps = 18/1341 (1%)
 Frame = +3

Query: 108  FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 287
            F+I KFNG+N F+ W+  ++ IL     + AI  +PA    D TDEKW ++D  A + + 
Sbjct: 5    FEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGRPA----DITDEKWKEMDDNAVANLH 59

Query: 288  LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 467
            L ++  +  + + + +AK +W+ L KLY  K L + ++LKRRL+  RM    S+ DHIN 
Sbjct: 60   LAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINT 119

Query: 468  FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 647
             N + S L+     I++ +++ +LL SLP SYD  +  + +         D L FDDV  
Sbjct: 120  LNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIT-----DTLHFDDVAG 174

Query: 648  AL---QAKALRKQEFSDEAQ-------VEGLFVDXXXXXXXXXXXXXXXXXXDIECYYCR 797
            A+   +++   K+E S+ ++         G   +                  +I+CY C 
Sbjct: 175  AILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCG 234

Query: 798  KPGHIRADCLKLKARDEKR-EKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLN 974
              GH++ +C  +K   EK  E S S+  VAS ++  E L      + E   +   +  LN
Sbjct: 235  MKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEIL------YSEAATSSKGERRLN 288

Query: 975  DGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLS 1151
            D W++DSGA++HM P +D F +Y  ++ G+V MGN +A +  GVGT++++ H G +  + 
Sbjct: 289  DVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 1152 EVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGER-HGNLYFLRGDIVC 1328
             VRHV  L+K+L+S+G L+ LG K   E G LKV     + M  E+   NLY L GD + 
Sbjct: 349  GVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQ 408

Query: 1329 -GGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGK 1505
               A V+ S  E   E+T +WH RLGHMSE+G+ VL+ + LL G K   L FCEHC+  K
Sbjct: 409  EADASVAASSQE---ETTMMWHQRLGHMSERGLKVLAERNLLHGLKAVNLPFCEHCVISK 465

Query: 1506 QCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNE 1685
            Q R  F      ++ +LD IHSDVW  S  +S GGAR+FV+FIDD+SRR+W+Y +K K++
Sbjct: 466  QHRLKFARVTTRSKHILDLIHSDVW-ESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSD 524

Query: 1686 VTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGV 1865
            V  VFK +K  +E +  + +K +R+DNGGEYI+     FC+++GIVR FTV  TPQQNGV
Sbjct: 525  VFPVFKAFKAQIELETRKKIKCLRTDNGGEYIDGEFLAFCKQEGIVRQFTVAHTPQQNGV 584

Query: 1866 AERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVN 2045
            AERMNRTLLER R ML  A + K +WAEAV TACY++NRSPSTAI  K+PME+W G  V+
Sbjct: 585  AERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVD 644

Query: 2046 YSNLRVFGCPAYFHVKED---KLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTF 2216
            YS+L VFGCP Y         KL  +++K IFLGY   VKGYRLW P   K ++SRDV F
Sbjct: 645  YSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVF 704

Query: 2217 NERAMLDSKKSTDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXX 2396
             E  +   +K+     +             +Q+E++   S +                  
Sbjct: 705  AENELQSEQKNDSTSKETAI----------VQMEEKSKESDSSEAESVHEEQEPDDVNDG 754

Query: 2397 XXXSTQQQIENIPSLTSQRERRPPTRYGFDEYASYALSVFEDEPFTFEEAMSTTHAIEWK 2576
               ST+Q  +  PS  S         Y    + +Y L   E EP TF EA++ + A +W 
Sbjct: 755  VRRSTRQTQK--PSWQSD--------YVMTSHDAYCLITEEGEPSTFHEALNGSDASQWM 804

Query: 2577 TAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVK-DGIPDSKGIVSGVRYKARLVAK 2753
            TAM EEM++LH+N TWELV+LPKGRK IG KWVY +K DG    +      RY+ARLV K
Sbjct: 805  TAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVE------RYRARLVVK 858

Query: 2754 GYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQP 2933
            GYAQ+EG+D+NE+FSPVV+ T+IRV+LA  A  DL LEQLDVKTAFLHG LEE+IYM QP
Sbjct: 859  GYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQP 918

Query: 2934 IGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGS 3113
             G++  GKE+ VCRL KSLYGLKQ+PR WYKRFD+F++   Y+R   D C Y+K+F G  
Sbjct: 919  EGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGND 978

Query: 3114 FVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLT 3293
            F+ LLLYVDDML+   +K  +  LK QL+ EF+MKDLGPA KILGM+I RDR   K+ L+
Sbjct: 979  FIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDMKIWLS 1038

Query: 3294 QKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYA 3473
            QK+YL KVLRRF M + K IS P+P   KLS  + P+   E   MS+VPYA+AVGSLMYA
Sbjct: 1039 QKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYA 1098

Query: 3474 MVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVD 3653
            M+CTRPD AQAVG+VSR+MA+PG+ HW AVK I+RY+ GT  + + F   + L V G+VD
Sbjct: 1099 MICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSE-LTVRGYVD 1157

Query: 3654 SDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGL 3833
            SD+AGD DK +ST+GY FTL+G  +SW S LQ +VALSTTEAEY+A T+A KEA+W++ L
Sbjct: 1158 SDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRL 1217

Query: 3834 VKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTE 4013
            +++LG  Q  + V CDSQSA+H+A+N  +H+RTKHI ++YH VREVV+ G V + K+ T 
Sbjct: 1218 MEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTN 1277

Query: 4014 DNPADMLTKVVPKVKFERCLS 4076
            DN AD++TK +   KF  C S
Sbjct: 1278 DNLADVMTKPINADKFVWCRS 1298


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score = 1143 bits (2956), Expect = 0.0
 Identities = 627/1351 (46%), Positives = 837/1351 (61%), Gaps = 27/1351 (1%)
 Frame = +3

Query: 111  DIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPK-DWTDEKWADLDLMACSTIR 287
            +I KF    +F+ W+  +K +LV      A+  +          D+K   +   A ST+ 
Sbjct: 7    EIEKFTIGGDFSLWKLKMKALLVHQGLESALDEEDLEASTGSGIDDKRRQIQNRAHSTLI 66

Query: 288  LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 467
            L L   I    S E +A  +W K+E L ++K L   L+LK+RL+ F M  G ++ DHI+ 
Sbjct: 67   LSLGDSILREISEEKTALGIWNKVETLCMKKSLAHRLFLKKRLYTFSMREGVTIQDHIDT 126

Query: 468  FNKICSDLSNI-SVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVV 644
            FNKI  DL  + +V I D DK+  LL SLP SY+ FVD +L G+T        L  +DV 
Sbjct: 127  FNKIILDLEGVENVKICDEDKAFFLLSSLPKSYEGFVDTMLYGRTT-------LTLEDVK 179

Query: 645  SALQAKALRKQEFSDEAQVEGLFVDXXXXXXXXXXXXXXXXXXDIE----------CYYC 794
            ++L +K ++K    + +  EGL                     + E          C+YC
Sbjct: 180  ASLSSKEIQKNCELETSNGEGLMARTEKKKDQKNKNQGKGHGKNQETADKKKKKRKCFYC 239

Query: 795  RKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLN 974
            RK GH   DC + K + E +EKS          + + A +D   G+    L V S S   
Sbjct: 240  RKEGHYIRDCFE-KKKKESQEKS---------GDAAVASDDGSDGYQSADLLVASNSNTK 289

Query: 975  DGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH---GVITT 1145
              W++DSG S+H+CP K  F  Y  V+GG V+MGN+N C  VG+   + RS     ++ +
Sbjct: 290  GQWVIDSGCSFHLCPEKTLFYKYEAVDGGRVLMGNNNVCNIVGIWFCK-RSRCLMELLRS 348

Query: 1146 LSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGERHGNLYFLRGDIV 1325
            L EVRH P L+++LISLG+L+SLGY + +  G L+V     + M G     LY L+G  V
Sbjct: 349  LHEVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYVLQGSSV 408

Query: 1326 CGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGK 1505
                 VS   +E   + T+LWH+RLGHMS KG+  LS +GLLGG++  +L+FCE+CIFGK
Sbjct: 409  PVQEGVSAVSEE---DRTKLWHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFCENCIFGK 465

Query: 1506 QCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNE 1685
              RS F    H ++ +LDY H D WGP++  S  G R+F++ IDD+SR+VW+Y +K K++
Sbjct: 466  SHRSKFNKGEHMSKQVLDYAHIDHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKIKDQ 525

Query: 1686 VTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGV 1865
              E FK WK++VE Q    +K +R+DNG E+     +E+C++ GI RH TV+ TPQQNG+
Sbjct: 526  ALEKFKVWKSLVENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQNGL 585

Query: 1866 AERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVN 2045
            AERMNRTL+++ RCML N+ L + +WAEAVNTA YLVNRSPS+AI  K+P E+W G   N
Sbjct: 586  AERMNRTLVDKTRCMLINSKLPRSFWAEAVNTASYLVNRSPSSAIGFKTPEELWNGKPAN 645

Query: 2046 YSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNER 2225
            Y NLRVFGCPAY H+ + KL  RA K +F+GYP GVKGY++WC +  K I+SRDV F+E 
Sbjct: 646  YQNLRVFGCPAYLHINQGKLEARALKGVFVGYPDGVKGYKIWCKDQGKCIVSRDVVFHES 705

Query: 2226 AMLDSKKSTDWDSQIXXXXXXXXXXXX----MQVEQRVPSSSTIXXXXXXXXXXXXXXXX 2393
             +L  K+S + D+ +                + VE     SS                  
Sbjct: 706  VLL--KESAEHDAGLQDNPAANKRSGSETSKVNVELLTDKSSEKEAASDDERATAESEEH 763

Query: 2394 XXXXSTQQQIENIPSLTSQ--RERRPPTRYGFDEYASYAL----SVFEDEPFTFEEAMST 2555
                  Q  ++N      +  RE R P RYG+ +  +YAL     V  +EP  F EAM +
Sbjct: 764  EVSELPQADLQNYQLARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEAMES 823

Query: 2556 THAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIVSGVRYK 2735
             H  +W  AM +EM+SL +N TW L+  P  ++ I CKW++   +GIPD    V   +YK
Sbjct: 824  VHCDKWLEAMQDEMESLQRNQTWTLIPNPGNKRLINCKWIFKRNEGIPD----VEPPKYK 879

Query: 2736 ARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEED 2915
            ARLVA+G+ QREGVD+NE+FSPVVKH+SIR+LLA VA  DLELEQ+DVKTAFLHGNLEE 
Sbjct: 880  ARLVARGFTQREGVDFNEIFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQ 939

Query: 2916 IYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFK 3095
            I M+QP G+E   KEDYVC L KSLYGLKQSPRQWY+RFD FM+ + Y RS+YD CVYF 
Sbjct: 940  ILMAQPEGFECKDKEDYVCLLHKSLYGLKQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFG 999

Query: 3096 KFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSK 3275
                G   YLLLYVDDMLIA+K KSEI+ LK  L  EFEMKDLG AK+ILGM+I RDRS 
Sbjct: 1000 GSDQGGVAYLLLYVDDMLIASKYKSEIERLKNLLKAEFEMKDLGNAKRILGMDIIRDRSA 1059

Query: 3276 GKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAV 3455
            G L L+Q  Y++KVL RF M + K +  P+    KLS     TT+E+   M++ PYA AV
Sbjct: 1060 GTLFLSQGKYIKKVLERFEMQDCKPVQTPLGPQFKLS---AATTSEDESQMNEFPYAQAV 1116

Query: 3456 GSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQS-- 3629
            GSLMYAMVCTR D A AV +VSRY++ PG+ HW AVK I+RYL G+   GL++ K +S  
Sbjct: 1117 GSLMYAMVCTRSDIAYAVSVVSRYLSCPGKVHWNAVKWIMRYLKGSSTCGLLYGKTKSDK 1176

Query: 3630 LKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVK 3809
            ++V GFVDSD+AGD D+ +STS Y F L+   ISW+S LQ   ALS+TEAE+IA TEAVK
Sbjct: 1177 IEVMGFVDSDFAGDLDRRKSTSRYMFVLNSCLISWKSSLQSGGALSSTEAEFIATTEAVK 1236

Query: 3810 EALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLV 3989
            EA+WLRGL+ +L + Q+ V V CD+Q+AIHL KNQ+YH RTKHID++   +R+ V  G V
Sbjct: 1237 EAMWLRGLLNELWLNQKIVQVFCDNQNAIHLVKNQMYHERTKHIDVKLQFIRDEVGKGTV 1296

Query: 3990 QLLKVDTEDNPADMLTKVVPKVKFERCLSLI 4082
             + K+ T  NPAD LTK +P  KFE C++L+
Sbjct: 1297 VVSKIHTSVNPADALTKSLPTAKFEFCVNLM 1327


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score = 1140 bits (2949), Expect = 0.0
 Identities = 623/1355 (45%), Positives = 833/1355 (61%), Gaps = 30/1355 (2%)
 Frame = +3

Query: 108  FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 287
            FD+   N    F+ WQ  ++ IL                  +WT E+    D  A + I+
Sbjct: 3    FDLPLLNYDTRFSLWQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRK-DQKALALIQ 61

Query: 288  LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 467
            L L  DI     +E ++  LW KLE + + KDLTS++ +K +L   +M    S++ H+ E
Sbjct: 62   LHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAE 121

Query: 468  FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 647
            F KI +DL ++ V   D D  ++LLCSLP SY  F D +L  +       D+L   +V  
Sbjct: 122  FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSR-------DELTLKEVYD 174

Query: 648  ALQAKALRK----QEFSDEAQVEGLFVDXXXXXXXXXXXXXXXXXXDIE--------CYY 791
            ALQ K   K     + S  ++ E L V                              C Y
Sbjct: 175  ALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKFCVY 234

Query: 792  CRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYL 971
            C+   H   +C K++A+ E++ K D K  VAS A   +   D +  F   V         
Sbjct: 235  CKLKNHNIDECKKVQAK-ERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAG------- 286

Query: 972  NDGWMLDSGASYHMCPSKDCFTTYREVNGGTVM-MGNSNACKTVGVGTVQVRSH-GVITT 1145
            +D W+LDS  S+H+C  ++ F++Y+ V  G V+ MG+ N C  VG+G+VQ+++  G+  T
Sbjct: 287  HDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRT 346

Query: 1146 LSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGERHG-NLYFLRGDI 1322
            L  VR++P + ++LISL  L++ GYKY+   G LKV     + + G+ +   LY LRG  
Sbjct: 347  LKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCT 406

Query: 1323 VCGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFG 1502
            + G    + ++   +   T LWHMRLGHMS  GM+ L  + LL G  + K+ FCEHCIFG
Sbjct: 407  LTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFG 466

Query: 1503 KQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKN 1682
            K  R  F T+VH T+G LDY+H+D+WGPS+  S GGAR+ +T IDD+SR+VW Y +KHK+
Sbjct: 467  KHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKD 526

Query: 1683 EVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNG 1862
            +    FK WK M+E+Q  R VK +R+DNGGE+      ++C ++GIVRH T+  TPQQNG
Sbjct: 527  DTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNG 586

Query: 1863 VAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLV 2042
            VAERMNRT++ RARCMLS+A ++K +WAEA +TACYL+NRSPS  +  K+P+EVW+G   
Sbjct: 587  VAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPA 646

Query: 2043 NYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNE 2222
            +YS L+VFGC AY HV   KL  RA K +FLGY  GVKGY+LW PE  K  +SR V FNE
Sbjct: 647  DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNE 706

Query: 2223 RAMLDSKKSTDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXXX 2402
              M  +   ++   +             MQVE     +                      
Sbjct: 707  SVMFTNSLPSEHVPE------KELQRMHMQVEHVDDYTGVQVEPVHEQDDHNNDVADDDA 760

Query: 2403 XSTQQQIENIPSLT---------SQRERRPPTRYGFD-EYASYALSVFED-----EPFTF 2537
                QQ   I  L          S+R  +PP R   +   + YALS  E      EP T+
Sbjct: 761  HDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATY 820

Query: 2538 EEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIV 2717
            +EA+    +  W +AM EEM+SL KN TWE+V LPK +K I CKW++  K+G+  S+   
Sbjct: 821  KEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEP-- 878

Query: 2718 SGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLH 2897
               +YKARLVA+GY+Q  GVDYN+VFSPVVKH+SIR  L+ VA  DLELEQLDVKTAFLH
Sbjct: 879  --PKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLH 936

Query: 2898 GNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYD 3077
            G LEEDIYM QP G+ V GKE YVC+L++SLYGLKQSPRQW KRFD+FML   + RSKYD
Sbjct: 937  GELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYD 996

Query: 3078 QCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEI 3257
             CVY K    GS +YLLLYVDDMLIAAKSK EI  LKK LS EF+MKDLG AKKIL MEI
Sbjct: 997  SCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEI 1055

Query: 3258 TRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKV 3437
            +RDR  G L L+Q +Y++KVL+RF M N+KA+S PI    KLS   CP+T  E+E+MS+V
Sbjct: 1056 SRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRV 1115

Query: 3438 PYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFE 3617
            PY++AVGSLMYAMVC+RPD + A+ LVSRYM+NPG+ HW  V+ I RYL GT    L F 
Sbjct: 1116 PYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRVVQWIFRYLRGTTYSCLKFG 1175

Query: 3618 KEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVT 3797
            +     + G+VDSDYA D D+ RS +GY FT+    +SWR+ LQ +VALSTTEAEY+A+ 
Sbjct: 1176 RTDK-GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAIC 1234

Query: 3798 EAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVD 3977
            EA KE +WL+GL  +L  ++  + ++CDSQSAI+L K+Q++H RTKHIDI+YH VR+V++
Sbjct: 1235 EACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIE 1294

Query: 3978 NGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 4082
             G +++ K+ T DNPADM+TK +P  KFE C SL+
Sbjct: 1295 EGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLV 1329


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score = 1140 bits (2948), Expect = 0.0
 Identities = 618/1347 (45%), Positives = 853/1347 (63%), Gaps = 22/1347 (1%)
 Frame = +3

Query: 108  FDIIKFNGKNNFTSWQTDVKDILVSMKQI-KAIKAKPATLPKDWTDEKWADLDLMACSTI 284
            +D+   + K  F+ WQ  ++ +L     + +A+++       +WT E+    D  A S I
Sbjct: 6    YDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRK-DRKALSLI 64

Query: 285  RLCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHIN 464
            +L LS DI      + +A  LW KLE + + KDLTS++++K +L + ++    S+++HI+
Sbjct: 65   QLHLSNDILQEVLQKKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLHESGSVLNHIS 124

Query: 465  EFNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVV 644
             F +I +DL ++ V   D D  ++LLCSLP SY  F   +L  +       D+L   +V 
Sbjct: 125  VFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANFRHTILLSR-------DELTLAEVY 177

Query: 645  SALQAKALRK---QEFSDEAQVEGLFV---------DXXXXXXXXXXXXXXXXXXDIECY 788
             ALQ +   K   Q ++  ++ E L V         +                     C 
Sbjct: 178  EALQNREKMKGMVQSYASSSKGEALQVRGRSEQRTYNDSNDHDKSQSRGRSKSRGKKFCK 237

Query: 789  YCRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSY 968
            YC+K  H   +C KL+ ++++  KSD K  V + AE S++  D +  F   V +      
Sbjct: 238  YCKKKNHFIEECWKLQNKEKR--KSDGKASVVTSAENSDS-GDCLVVFAGYVAS------ 288

Query: 969  LNDGWMLDSGASYHMCPSKDCFTTYREV-NGGTVMMGNSNACKTVGVGTVQVRSH-GVIT 1142
             +D W+LD+  S+H+C ++D F++Y+ V N   V MG+ N  + VG+G+VQ+++H G+  
Sbjct: 289  -HDEWILDTACSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGMTR 347

Query: 1143 TLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGERHG-NLYFLRGD 1319
            TL +VRH+P + ++LISL  L++ GYKY+   G +KV     + M G+ +  NLY LRG 
Sbjct: 348  TLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGS 407

Query: 1320 IVCGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIF 1499
             +  G++ + ++ + +   T LWHMRLGHMSE GM+ L  + LL G     + FCEHC+F
Sbjct: 408  TL-HGSVTAAAVTKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVF 466

Query: 1500 GKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHK 1679
            GK  R  F T+VH T+G+LDY+H+D+WGPSR  S GGAR+ +T IDD+SR+ W Y +KHK
Sbjct: 467  GKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKEWPYFLKHK 526

Query: 1680 NEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQN 1859
            ++    FK+ K M+E+Q  + VK + +DNGGE+  D   ++C ++GIVRH T+  TPQQN
Sbjct: 527  DDTFAAFKERKVMIERQTEKEVKVLCTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQN 586

Query: 1860 GVAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNL 2039
            GVAERMNRT++ +ARCMLSNA ++K +WAEA NTACYL+NRSPS  +  K+P+E+W+G  
Sbjct: 587  GVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMP 646

Query: 2040 VNYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFN 2219
             +YS LRVFGC AY HV   KL  RA K +FLGY  GVKGY+LW PE NK  +SR+V FN
Sbjct: 647  ADYSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKGYKLWNPETNKTFMSRNVIFN 706

Query: 2220 ERAMLDSKKSTDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXX 2399
            E  M +    TD    I            +QVE      + I                  
Sbjct: 707  EFVMFNDSLPTD---VIPGGSDEEQQYVSVQVEHVDDQETEIVGNDVNDTVQHSPSVL-- 761

Query: 2400 XXSTQQQIENIPSLTSQRERRPPTRYGFD-EYASYALSVFED-----EPFTFEEAMSTTH 2561
                Q Q E I    ++R    P R   + +   YA S  E      EP T+ EA+ +  
Sbjct: 762  ----QPQDEPIAHRRTKRSCGAPVRLIEECDMVYYAFSYAEQVENTLEPATYTEAVVSGD 817

Query: 2562 AIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIVSGVRYKAR 2741
              +W +A+ EEM+SL KN TWELV LPK +K + CKW++  K+G+  S+      R+K R
Sbjct: 818  REKWISAIQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEP----PRFKVR 873

Query: 2742 LVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIY 2921
            LVAKG++Q  GVDYN+VFSPVVKH+SIR   + V   DLELEQLDVKT FLHG LEE+IY
Sbjct: 874  LVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVTMHDLELEQLDVKTTFLHGELEEEIY 933

Query: 2922 MSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKF 3101
            M QP G+ V GKEDYVC+L++SLYGLKQSPRQWYKRFD+FML   + RS++D CVY K F
Sbjct: 934  MDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIK-F 992

Query: 3102 PGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGK 3281
              GS +YLLLYVDDMLIAAKSK +I  LKKQLS EF+MKDLG AKKILGMEITRDR+ G 
Sbjct: 993  VNGSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGL 1052

Query: 3282 LCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGS 3461
            L L+Q+SY++KVL+RF MH++K +S PI    KLS   C +T E++E+MS+VPY++AVGS
Sbjct: 1053 LFLSQQSYIKKVLQRFNMHDAKPVSTPIAPHFKLSALQCASTDEDVEYMSRVPYSSAVGS 1112

Query: 3462 LMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVC 3641
            LMYAMVC+ PD + A+ LVSRYMANPG+ HW AV+ I RYL GT D  L F +     + 
Sbjct: 1113 LMYAMVCSWPDLSHAMSLVSRYMANPGKEHWKAVQWIFRYLRGTADACLKFGRIDK-GLV 1171

Query: 3642 GFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALW 3821
            G+VDSD+A D DK RS +GY FT+    +SW++ LQP+VA STTEAEY+A+ EA KE++W
Sbjct: 1172 GYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATLQPVVAQSTTEAEYMAIAEACKESVW 1231

Query: 3822 LRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLK 4001
            L+GL  +L  +   + + CDSQSAI L K+Q++H RTKHIDI+YH VR++V  G +++ K
Sbjct: 1232 LKGLFAELCGVDSCINLFCDSQSAICLTKDQMFHERTKHIDIKYHYVRDIVAQGKLKVCK 1291

Query: 4002 VDTEDNPADMLTKVVPKVKFERCLSLI 4082
            +   DNPADM+TK +P  KFE C SL+
Sbjct: 1292 ISIHDNPADMMTKPIPVAKFELCSSLV 1318


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score = 1138 bits (2944), Expect = 0.0
 Identities = 623/1355 (45%), Positives = 834/1355 (61%), Gaps = 30/1355 (2%)
 Frame = +3

Query: 108  FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 287
            FD+   N    F+ WQ +++ IL                  +WT E+    D  A + I+
Sbjct: 5    FDLPLLNYDTRFSLWQVNMRGILAQTHDYDEALDNFGKRRAEWTAEEIRK-DQKALALIQ 63

Query: 288  LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 467
            L L  DI     +E ++  LW KLE + + KDLTS++ +K +L   +M    S++ HI E
Sbjct: 64   LHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHIAE 123

Query: 468  FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 647
            F KI +DL ++ V   D D  ++LLCSLP SY  F D +L  +       D+L   +V  
Sbjct: 124  FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSR-------DELTLKEVYD 176

Query: 648  ALQAKALRK----QEFSDEAQVEGLFVDXXXXXXXXXXXXXXXXXXDIE--------CYY 791
            ALQ K   K     + S  ++ E L V                              C Y
Sbjct: 177  ALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENKTSNEKNYDRRGRSKSKPPGNKKFCVY 236

Query: 792  CRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYL 971
            C+   H   +C K++A+ E++ K D K  VAS A   +   D +  F   V         
Sbjct: 237  CKLKNHNIDECKKVQAK-ERKNKKDGKVSVASAAVSDDDSGDCLVVFAGCVAG------- 288

Query: 972  NDGWMLDSGASYHMCPSKDCFTTYREVNGGTVM-MGNSNACKTVGVGTVQVRSH-GVITT 1145
            +D W+LDS  S+H+C  ++ F++Y+ V  G V+ MG+ N C  VG+G+VQ+++  G+  T
Sbjct: 289  HDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRT 348

Query: 1146 LSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGERHG-NLYFLRGDI 1322
            L  VR++P + ++LISL  L++ GYKY+   G LKV     + + G+ +   LY LRG  
Sbjct: 349  LKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCT 408

Query: 1323 VCGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFG 1502
            + G    + ++   +   T LWHMRLGHMS  GM+ L  + LL G  + K+ FCEHCIFG
Sbjct: 409  LPGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGYTSSKIKFCEHCIFG 468

Query: 1503 KQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKN 1682
            K  R  F T+VH T+G LDY+H+D+WGPS+  S GGAR+ +T IDD+SR+VW Y +KHK+
Sbjct: 469  KHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKD 528

Query: 1683 EVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNG 1862
            +    FK WK M+E+Q  R VK + +DNGGE+      ++C ++GIVRH T+  TPQQNG
Sbjct: 529  DTFTAFKNWKVMIERQTERKVKLLCTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNG 588

Query: 1863 VAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLV 2042
            VAERMNRT++ RARCMLS+A ++K +WAEA +TACYL+NRSPS  +  K+P+EVW+G   
Sbjct: 589  VAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPA 648

Query: 2043 NYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNE 2222
            +YS L+VFGC AY HV   KL  RA K +FLGY  GVKGY+LW PE  K  +SR V FNE
Sbjct: 649  DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNE 708

Query: 2223 RAMLDSKKSTDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXXX 2402
              M  +   ++   +             MQVE     +                      
Sbjct: 709  SVMFTNSLPSEHVPE------KELQRMHMQVEHVDDDTGVQVEPVDEQDDHNNDVADDDA 762

Query: 2403 XSTQQQIENIPSLT---------SQRERRPPTRYGFD-EYASYALSVFED-----EPFTF 2537
                QQ   I  L          S+R  +PP R   +   + YALS  E      EP T+
Sbjct: 763  HDDVQQTPPILQLEEDLSIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATY 822

Query: 2538 EEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIV 2717
            +EA+    +  W +AM EEM+SL KN TWE+V LPK +K I CKW++  K+ +  S+   
Sbjct: 823  KEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEP-- 880

Query: 2718 SGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLH 2897
               +YKARLVA+GY+Q  GVDYN+VFSPVVKH+SIR  L+ VA  DLELEQLDVKTAFLH
Sbjct: 881  --PKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLH 938

Query: 2898 GNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYD 3077
            G LEEDIYM QP G+ V GKE YVC+L++SLYGLKQSPRQW KRFD+FML   + RSKYD
Sbjct: 939  GELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYD 998

Query: 3078 QCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEI 3257
             CVY K    GS +YLLLYVDDMLIAAKSK EI  LKK LS EF+MKDLG AKKILGMEI
Sbjct: 999  SCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEI 1057

Query: 3258 TRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKV 3437
            +RDR  G L L+Q +Y++KVL+RF M N+KA+S PI    KLS   CP+T  E+E+MS+V
Sbjct: 1058 SRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRV 1117

Query: 3438 PYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFE 3617
            PY++AVGSLMYAMVC+RPD + A+ LVSRYM+NPG+ HW A++ I RYL GT    L F 
Sbjct: 1118 PYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRALQWIFRYLRGTTYSCLKFG 1177

Query: 3618 KEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVT 3797
            +     + G+VDSDYA D D+ RS +GY FT+    +SWR+ LQ +VALSTTEAEY+A+ 
Sbjct: 1178 RTDK-GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAIC 1236

Query: 3798 EAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVD 3977
            EA KE +WL+GL  +L  ++  + ++CDSQSAI+L K+Q++H RTKHIDI+YH VR+V++
Sbjct: 1237 EACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIE 1296

Query: 3978 NGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 4082
             G +++ K+ T DNPADM+TK +P  KFE C SL+
Sbjct: 1297 EGKLKVCKICTHDNPADMMTKPIPVAKFELCSSLV 1331


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 1137 bits (2941), Expect = 0.0
 Identities = 614/1341 (45%), Positives = 840/1341 (62%), Gaps = 18/1341 (1%)
 Frame = +3

Query: 108  FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 287
            F+I KFNG+N F+ W+  ++ IL     + AI  + A    D TDEKW ++D  A + + 
Sbjct: 5    FEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGRLA----DITDEKWKEMDDNAVANLH 59

Query: 288  LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 467
            L ++  +  + + + +AK +W+ L KLY  K L + ++LKRRL+  +M    S+ DHIN 
Sbjct: 60   LAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLQMGESTSVTDHINT 119

Query: 468  FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 647
             N + S L+     I+  +++ +LL SLP SYD  +  + +         D L FDDV  
Sbjct: 120  LNTLFSQLTASDFKIAKNERAELLLQSLPDSYDQLIINITNNNI-----ADTLHFDDVAG 174

Query: 648  AL---QAKALRKQEFSDEAQ-------VEGLFVDXXXXXXXXXXXXXXXXXXDIECYYCR 797
            A+   +++   K+E S+ ++         G   +                  +I+CY C 
Sbjct: 175  AILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCG 234

Query: 798  KPGHIRADCLKLKARDEKR-EKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLN 974
              GH++ +C  +K   EK  E S S+  VAS ++  E L      + E   +   +  LN
Sbjct: 235  MKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEIL------YSEAATSSKGERRLN 288

Query: 975  DGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLS 1151
            D W++DSGA++HM P +D F +Y  ++ G+V MGN +A +  GVGT++++ H G +  + 
Sbjct: 289  DVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 1152 EVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGER-HGNLYFLRGDIVC 1328
             VRHV  L+K+L+S+G L+ LG K   E G LKV     + M  E+   NLY L GD + 
Sbjct: 349  GVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQ 408

Query: 1329 -GGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGK 1505
               A V+ +  E   E+T +WH RLGHMSE+G+ VL  + LL G KT  L FCEHC+  K
Sbjct: 409  EADASVAAASQE---ETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVMSK 465

Query: 1506 QCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNE 1685
            Q R  F      ++ +LD IHSDVW  S  +S GGAR+FV+FIDD+SRR+W+Y +K K++
Sbjct: 466  QHRLKFARVTTRSKHILDLIHSDVW-ESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSD 524

Query: 1686 VTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGV 1865
            V  VFK +K  +E +  + +K +R+DNGGEY++     FC+++GIVR FTV  TPQQNGV
Sbjct: 525  VFPVFKAFKAQIELETEKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGV 584

Query: 1866 AERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVN 2045
            AERMNRTLLER R ML  A + K +WAEA  TACY++NRSPSTAI  K+PME+W G  V+
Sbjct: 585  AERMNRTLLERTRAMLKTAGMAKSFWAEAAKTACYVINRSPSTAIDLKTPMEMWKGKPVD 644

Query: 2046 YSNLRVFGCPAYFHV---KEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTF 2216
            YS+L VFGCP Y      ++ KL  +++K IFLGY   VKGYRLW P   K ++SRDV F
Sbjct: 645  YSSLHVFGCPVYVMYNSQEKTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVF 704

Query: 2217 NERAMLDSKKSTDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXX 2396
             E  +   +K+     +             +Q+E++   S +                  
Sbjct: 705  AENELQSEQKNDSTSKETAI----------VQMEEKSKESDSSEAESVHEEQEPDDVNDG 754

Query: 2397 XXXSTQQQIENIPSLTSQRERRPPTRYGFDEYASYALSVFEDEPFTFEEAMSTTHAIEWK 2576
               ST+Q  +  PS  S         Y    + +Y L   E EP TF EA++ + A +W 
Sbjct: 755  VRRSTRQTQK--PSWQSD--------YVMTSHDAYCLITEEGEPSTFHEALNGSDASQWM 804

Query: 2577 TAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVK-DGIPDSKGIVSGVRYKARLVAK 2753
            TAM EEM++LH+N TWELV+LPKGRK IG KWVY +K DG    +      RY+ARLV K
Sbjct: 805  TAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVE------RYRARLVVK 858

Query: 2754 GYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQP 2933
            GYAQ+EG+D+NE+FSPVV+ T+IRV+LA  A  DL LEQLDVKTAFLHG LEE+IYM QP
Sbjct: 859  GYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQP 918

Query: 2934 IGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGS 3113
             G++  GKE+ VCRL KSLYGLKQ+PR WYKRFD+F++   Y R   D C Y+K+F G  
Sbjct: 919  EGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGND 978

Query: 3114 FVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLT 3293
            F+ LLLYVDDML+   +K  +  LK QL+ EF+MKDLGPA KILGM+I RDR   K+ L+
Sbjct: 979  FIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLS 1038

Query: 3294 QKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYA 3473
            QK+YL KVLRRF M + K IS P+P   KLS  + P+   E   MS+VPYA+AVGSLMYA
Sbjct: 1039 QKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYA 1098

Query: 3474 MVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVD 3653
            M+CTRPD AQAVG+VSR+MA+PG+ HW AVK I+RY+ GT  + + F   + L V G+VD
Sbjct: 1099 MICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSE-LTVWGYVD 1157

Query: 3654 SDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGL 3833
            SD+AGD DK +ST+GY FTL+G  +SW S LQ +VALSTTEAEY+A T+A KEA+W++ L
Sbjct: 1158 SDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRL 1217

Query: 3834 VKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTE 4013
            +++LG  Q  + V CDSQSA+H+A+N  +H+RTKHI ++YH VREVV+ G V + K+ T 
Sbjct: 1218 MEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTN 1277

Query: 4014 DNPADMLTKVVPKVKFERCLS 4076
            DN AD++TK +   KF  C S
Sbjct: 1278 DNLADVMTKPINTDKFVWCRS 1298


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score = 1136 bits (2938), Expect = 0.0
 Identities = 623/1355 (45%), Positives = 832/1355 (61%), Gaps = 30/1355 (2%)
 Frame = +3

Query: 108  FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 287
            FD+   N    F+  Q  ++ IL                  +WT E+    D  A + I+
Sbjct: 3    FDLPLLNYDTRFSLRQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRK-DQKALALIQ 61

Query: 288  LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 467
            L L  DI      E ++  LW KLE + + KDLTS++ +K +L   +M    S++ H+ E
Sbjct: 62   LHLHNDILQECLIEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAE 121

Query: 468  FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 647
            F KI +DL ++ V   D D  ++LLCSLP SY  F D +L  +       D+L   +V  
Sbjct: 122  FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSR-------DELTLKEVYD 174

Query: 648  ALQAKALRK----QEFSDEAQVEGLFVDXXXXXXXXXXXXXXXXXXDIE--------CYY 791
            ALQ K   K     + S  ++ E L V                              C Y
Sbjct: 175  ALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKFCVY 234

Query: 792  CRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYL 971
            C+   H   +C K++A+ E++ K D K  VAS A   +   D +  F   V         
Sbjct: 235  CKLKNHNIDECKKVQAK-ERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAG------- 286

Query: 972  NDGWMLDSGASYHMCPSKDCFTTYREVNGGTVM-MGNSNACKTVGVGTVQVRSH-GVITT 1145
            +D W+LDS  S+H+C  ++ F++Y+ V  G V+ MG+ N C  VG+G+VQ+++  G+  T
Sbjct: 287  HDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRT 346

Query: 1146 LSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGERHG-NLYFLRGDI 1322
            L  VR++P + ++LISL  L++ GYKY+   G LKV     + + G+ +   LY LRG  
Sbjct: 347  LKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCT 406

Query: 1323 VCGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFG 1502
            + G    + ++   +   T LWHMRLGHMS  GM+ L  + LL G  + K+ FCEHCIFG
Sbjct: 407  LTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFG 466

Query: 1503 KQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKN 1682
            K  R  F T+VH T+G LDY+H+D+WGPS+  S GGAR+ +T IDD+SR+VW Y +KHK+
Sbjct: 467  KHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKVWPYFLKHKD 526

Query: 1683 EVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNG 1862
            +    FK WK M+E+Q  R VK +R+DNGGE+      ++C ++GIVRH T+  TPQQNG
Sbjct: 527  DTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNG 586

Query: 1863 VAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLV 2042
            VAERMNRT++ RARCMLS+A ++K +WAEA +TACYL+NRSPS  +  K+P+EVW+G   
Sbjct: 587  VAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGMPA 646

Query: 2043 NYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNE 2222
            +YS L+VFGC AY HV   KL  RA K +FLGY  GVKGY+LW PE  K  +SR V FNE
Sbjct: 647  DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNE 706

Query: 2223 RAMLDSKKSTDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXXX 2402
              M  +   ++   +             MQVE     +                      
Sbjct: 707  SVMFTNSLPSEHVPE------KELQRMHMQVEHVDDDTGVQVEPVHEQDDHNNDVADDDA 760

Query: 2403 XSTQQQIENIPSLT---------SQRERRPPTRYGFD-EYASYALSVFED-----EPFTF 2537
                QQ   I  L          S+R  +PP R   +   + YALS  E      EP T+
Sbjct: 761  HDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATY 820

Query: 2538 EEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIV 2717
            +EA+    +  W +AM EEM+SL KN TWE+V LPK +K I CKW++  K+G+  S+   
Sbjct: 821  KEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEP-- 878

Query: 2718 SGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLH 2897
               +YKARLVA+GY+Q  GVDYN+VFSPVVKH+SIR  L+ VA  DLELEQLDVKTAFLH
Sbjct: 879  --PKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLH 936

Query: 2898 GNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYD 3077
            G LEEDIYM QP G+ V GKE YVC+L++SLYGLKQSPRQW KRFD+FML   + RSKYD
Sbjct: 937  GELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYD 996

Query: 3078 QCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEI 3257
             CVY K    GS +YLLLYVDDMLIAAKSK EI  LKK LS EF+MKDLG AKKILGMEI
Sbjct: 997  SCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEI 1055

Query: 3258 TRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKV 3437
            +RDR  G L L+Q +Y++KVL+RF M N+KA+S PI    KLS   CP+   E+E+MS+V
Sbjct: 1056 SRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRV 1115

Query: 3438 PYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFE 3617
            PY++AVGSLMYAMVC+RPD + A+ LVSRYM+NPG+ HW AV+ I RYL GT    L F 
Sbjct: 1116 PYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFG 1175

Query: 3618 KEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVT 3797
            +     + G+VDSDYA D D+ RS +GY FT+    +SWR+ LQ +VALSTTEAEY+A+ 
Sbjct: 1176 RTDK-GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAIC 1234

Query: 3798 EAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVD 3977
            EA KE +WL+GL  +L  ++  + ++CDSQSAI+L K+Q++H RTKHIDI+YH VR+V++
Sbjct: 1235 EACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIE 1294

Query: 3978 NGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 4082
             G +++ K+ T DNPADM+TK +P  KFE C SL+
Sbjct: 1295 EGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLV 1329


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 1135 bits (2935), Expect = 0.0
 Identities = 613/1341 (45%), Positives = 839/1341 (62%), Gaps = 18/1341 (1%)
 Frame = +3

Query: 108  FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 287
            F+I KFNG+  F+ W+  ++ IL     + AI  +PA    D TDEKW ++D  A + + 
Sbjct: 5    FEIEKFNGRK-FSLWKLKIRAILRKDNCLDAIDGRPA----DITDEKWKEMDDNAVANLH 59

Query: 288  LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 467
            L ++  +  + + + +AK +W+ L KLY  K L + ++LKRRL+  RM    S+ DHIN 
Sbjct: 60   LAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINT 119

Query: 468  FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 647
             N + S L+     I++ +++ +LL SLP SYD  +  + +         D L FDDV  
Sbjct: 120  LNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNI-----ADTLHFDDVAG 174

Query: 648  AL---QAKALRKQEFSDEAQ-------VEGLFVDXXXXXXXXXXXXXXXXXXDIECYYCR 797
            A+   +++   K+E S+ ++         G   +                  +I+CY C 
Sbjct: 175  AILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKNNIKCYGCG 234

Query: 798  KPGHIRADCLKLKARDEKR-EKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLN 974
              GH++ +C   K   EK  E + S+  VAS ++  E L      + E   +   +  LN
Sbjct: 235  MKGHVKKECWNNKKNGEKNSEATTSQGCVASTSDDGEIL------YSEAATSSEGERQLN 288

Query: 975  DGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLS 1151
            D W++DSGA++HM P +D F +Y  ++ G+V MGN +A +  GVGT++++ H G +  + 
Sbjct: 289  DVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 1152 EVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGER-HGNLYFLRGDIVC 1328
             VRHV  L+K+L+S+G L+ LG K  +E G LKV     + M  E+   NLY L GD + 
Sbjct: 349  GVRHVKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQ 408

Query: 1329 -GGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGK 1505
               A V+ +  E   E+T +WH RLGHMSE+G+ VL  + LL G KT  L FCEHC+  K
Sbjct: 409  EADASVAAASQE---ETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISK 465

Query: 1506 QCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNE 1685
            Q R  F      ++ +LD IHSDVW  S  +S GGAR+FV+FIDD+SRR+W+Y +K K++
Sbjct: 466  QHRLKFARVTTRSKHILDLIHSDVW-ESPKLSLGGARYFVSFIDDYSRRLWVYPIKKKSD 524

Query: 1686 VTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGV 1865
            V  VFK +K  +E + G+ +K +R+DNGGEY++     FC+++GIVR FTV  TPQQNGV
Sbjct: 525  VFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGV 584

Query: 1866 AERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVN 2045
            AERMNRTLLER R ML  A + K +WAEAV TACY++NRSPST I  K+PME+W G  V+
Sbjct: 585  AERMNRTLLERTRAMLKTAEMAKSFWAEAVKTACYVINRSPSTTIDLKTPMEMWKGKPVD 644

Query: 2046 YSNLRVFGCPAYFHVKED---KLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTF 2216
            YS+L VFGCP Y         KL  +++K IFLGY   VKGYRLW P   K ++SRDV F
Sbjct: 645  YSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVF 704

Query: 2217 NERAMLDSKKSTDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXX 2396
             E  +   +K+     +             +Q+E++   S +                  
Sbjct: 705  AENELQSEQKNDSTFKETAI----------LQIEEKSKESDSSEAESVHEEQEPDDVNNG 754

Query: 2397 XXXSTQQQIENIPSLTSQRERRPPTRYGFDEYASYALSVFEDEPFTFEEAMSTTHAIEWK 2576
               ST+Q  +  PS  S         Y    + +Y L   E EP TF EA++ + A +W 
Sbjct: 755  VRRSTRQTQK--PSWQSD--------YVMTGHDAYCLIAEEGEPSTFHEALNGSDASQWM 804

Query: 2577 TAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVK-DGIPDSKGIVSGVRYKARLVAK 2753
            TA+ EEM++L KN TWELV+LPKGRK IG KWVY +K DG    +      RY+ARLV K
Sbjct: 805  TAIHEEMEALRKNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVE------RYRARLVVK 858

Query: 2754 GYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQP 2933
            GYAQ+EG+D+NE+FSPVV+ T+IRV+LA  A  DL LEQLDVKTAFLHG LEE+IYM QP
Sbjct: 859  GYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQP 918

Query: 2934 IGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGS 3113
             G++  GKE+ VCRL KSLYGLKQ+PR WYKRFD+F++   Y R   D C Y+K+F G  
Sbjct: 919  EGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGND 978

Query: 3114 FVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLT 3293
            F+ LLLYVDD+L+   +K  +  LK QL+ EF+MKDLGPA KILGM+I RDR   K+ L+
Sbjct: 979  FIILLLYVDDILVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLS 1038

Query: 3294 QKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYA 3473
            QK+YL KVLRRF M + K IS P+P   KLS  + P+   E   MS+VPYA+AVGSLMYA
Sbjct: 1039 QKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYA 1098

Query: 3474 MVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVD 3653
            M+CTRPD AQAVG+VSR+MA+PG+ HW AVK I+RY+ GT  + + F   + L V G+VD
Sbjct: 1099 MICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSE-LTVRGYVD 1157

Query: 3654 SDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGL 3833
            SD+AGD DK +ST+GY FTL+G  +SW S LQ +VALSTTEAEY+A T+A KEA+W++ L
Sbjct: 1158 SDFAGDHDKRKSTTGYVFTLTGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRL 1217

Query: 3834 VKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTE 4013
            +++LG  Q  + V CDSQSA+H+A+N  +H+RTKHI ++YH VREVV+ G V + K+ T 
Sbjct: 1218 MEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTN 1277

Query: 4014 DNPADMLTKVVPKVKFERCLS 4076
            DN AD++TK +   KF  C S
Sbjct: 1278 DNLADVMTKPINADKFVWCRS 1298


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score = 1134 bits (2934), Expect = 0.0
 Identities = 617/1341 (46%), Positives = 855/1341 (63%), Gaps = 23/1341 (1%)
 Frame = +3

Query: 108  FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 287
            ++I KFNG NNF+ W+  +K +L     + AI  +P  +    TD+KW ++D  A S + 
Sbjct: 5    YEIEKFNG-NNFSLWKMKMKAVLRKNNCLAAIGERPMEI----TDDKWNEVDGNAISDLH 59

Query: 288  LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 467
            L L+  +  + + + +AK +W+ L KLY  K L ++++LKR+L+  RM+    + DHIN 
Sbjct: 60   LALADGVLSSVAEKNTAKEIWDTLTKLYEAKSLHNKIFLKRKLYTLRMAESTMVTDHINT 119

Query: 468  FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVV- 644
               + S L+ +   I + +++ +LL SLP SYD  +  L +    E      LVFDDV  
Sbjct: 120  LKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQLIINLTNNNPVES-----LVFDDVAA 174

Query: 645  SALQAKALRKQEFSDEA---QVEGLFV------DXXXXXXXXXXXXXXXXXXDIECYYCR 797
            S L  ++ RK + + +A   Q E L V      +                  +++CY C 
Sbjct: 175  SVLNEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGSQNQGRSKFRGKKNVKCYNCG 234

Query: 798  KPGHIRADCLKLKARDEKREK--SDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYL 971
            K GH++ +C   + R E +E   S+++  VAS ++  E L      + E       +  L
Sbjct: 235  KKGHVKKECWSNQKRREGKEPETSNAQGCVASTSDDGEIL------YSEATTVSEGRKRL 288

Query: 972  NDGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTL 1148
            +D W++DSGA++HM   ++ F TY  ++GG+V MGN +A +  G+GT++++   G I T+
Sbjct: 289  SDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTIRTI 348

Query: 1149 SEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGERHG-NLYFLRGDIV 1325
             EVRHV  L+K+L+SLG ++S GYK   E G +K+     + M  E+ G NL+ L+G+ +
Sbjct: 349  GEVRHVNGLKKNLLSLGQMDSHGYKTHVENGIMKIVKGALVLMKVEKIGANLFMLKGETL 408

Query: 1326 CGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGK 1505
                    S  E   EST +WH++LGHMSE+G+ +LS + LL G K+  L FCEHC+  K
Sbjct: 409  QEADACVASNGE---ESTMMWHLKLGHMSEQGLKILSERKLLPGLKSVSLPFCEHCVTSK 465

Query: 1506 QCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNE 1685
            Q R  F  ++  ++ +LD IHSDVW  S  +S GGA++ VTFIDD+SRR W+Y +K K++
Sbjct: 466  QHRLKFSRSIARSKCILDLIHSDVW-ESPDISMGGAKYMVTFIDDYSRRCWVYPIKKKSD 524

Query: 1686 VTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGV 1865
            V  VFK++K  VE + G+ +K +R+DNGGEY +     FC+++GI R FTV  TPQQNGV
Sbjct: 525  VFPVFKEYKAWVELESGKKIKCLRTDNGGEYTDGEFLAFCKQEGIQRQFTVAYTPQQNGV 584

Query: 1866 AERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVN 2045
            AERMNRTL ER R ML  A L   +WAEA  TACY+VNRSPSTAI  K+ ME+WTG   +
Sbjct: 585  AERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNRSPSTAIGLKTAMEMWTGKPAD 644

Query: 2046 YSNLRVFGCPAY--FHVKE-DKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTF 2216
            YS L  FGCP Y  ++ +E  KL  ++++ IFLGY  GVKGYRLW P  +K +ISRDV F
Sbjct: 645  YSYLHAFGCPMYVMYNAQERTKLDAKSRRCIFLGYADGVKGYRLWDPTAHKIVISRDVIF 704

Query: 2217 NERAMLDSKKSTDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXX 2396
             E    D  +  D D                 V+++   S T+                 
Sbjct: 705  VE----DQLQRKDGDDGT--------------VKEK---SETVPVYVENNPENSDSSEAA 743

Query: 2397 XXXSTQQQIEN-IPSLT-SQRERRPPT---RYGFDEYASYALSVFEDEPFTFEEAMSTTH 2561
                 Q+ +E+  P +  S RERRPPT    Y  +   +Y L   + EP TF EA++++ 
Sbjct: 744  PEHEEQEPVESEAPEVRRSTRERRPPTWHSEYVTEINVAYCLLTEDGEPSTFHEALNSSD 803

Query: 2562 AIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVK-DGIPDSKGIVSGVRYKA 2738
               W TAM EE+++LHKN TWELV LP+GRK IG KWVY +K DG    +      RY+A
Sbjct: 804  VALWMTAMQEEIEALHKNKTWELVPLPRGRKAIGNKWVYKIKRDGNDQVE------RYRA 857

Query: 2739 RLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDI 2918
            RLV KGYAQ+EG+D+NE+FSPVV+ T++R++LA  A FDL LEQLDVKTAFLHG LEE+I
Sbjct: 858  RLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEI 917

Query: 2919 YMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKK 3098
            YM QP G+   GKE+ VCRL KSLYGLKQ+PR WYKRFD+F++   Y R   D C Y+K+
Sbjct: 918  YMLQPEGFAETGKENLVCRLNKSLYGLKQAPRYWYKRFDSFIMSLGYNRLSSDHCAYYKR 977

Query: 3099 FPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKG 3278
            F    F+ LLLYVDDML+A  +K  I  LK QL+ EFEMKDLGPA KILGM+I RDR+  
Sbjct: 978  FEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNM 1037

Query: 3279 KLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVG 3458
            K+ L+QK+YL+K+LRRF M + K+IS  +P   KLS  +CP+   E + MS+VPYA+AVG
Sbjct: 1038 KIWLSQKNYLKKILRRFNMQDCKSISTSLPVNFKLSSSMCPSNEAERKEMSRVPYASAVG 1097

Query: 3459 SLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKV 3638
            SLM+AM+CTRPD AQAVG+VSRYMANPG  HW AVK ILRY+ GT D+ L +   +   V
Sbjct: 1098 SLMFAMICTRPDIAQAVGVVSRYMANPGGEHWIAVKRILRYIRGTSDVALCYGGSE-FTV 1156

Query: 3639 CGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEAL 3818
             G+VDSD+AGD DK +ST+GY FTL+GA +SW S LQ +VALSTTEAEY+A T+A K+A+
Sbjct: 1157 RGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKKAI 1216

Query: 3819 WLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLL 3998
            W++ L+++LG  Q+ ++V CDSQSA+H+A+N  +H+RTKHI ++YH VREVV++G V L 
Sbjct: 1217 WIQRLLEELGHKQQKILVFCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQ 1276

Query: 3999 KVDTEDNPADMLTKVVPKVKF 4061
            K+ T++N AD+LTK +   KF
Sbjct: 1277 KIHTKENLADVLTKPINTDKF 1297


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score = 1130 bits (2922), Expect = 0.0
 Identities = 616/1341 (45%), Positives = 850/1341 (63%), Gaps = 23/1341 (1%)
 Frame = +3

Query: 108  FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 287
            ++I KFNG NNF+ W+  +K +L     + AI  +P  +    TD+KW ++D  A S + 
Sbjct: 5    YEIEKFNG-NNFSLWKMKMKAVLRKNNCLAAIGERPMEI----TDDKWNEVDSNAISDLH 59

Query: 288  LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 467
            L L+  +  + + + +AK +W+ L KLY  K L ++++LKR+L+  RM+    + DHIN 
Sbjct: 60   LALADGVLSSVAEKNTAKEIWDTLTKLYEAKSLHNKIFLKRKLYTLRMAESTMVTDHINT 119

Query: 468  FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVV- 644
               + S L+ +   I + +++ +LL SLP SYD  +  L +         D LVFDDV  
Sbjct: 120  LKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQLIINLTNNNP-----VDSLVFDDVAA 174

Query: 645  SALQAKALRKQEFSDEA---QVEGLFV------DXXXXXXXXXXXXXXXXXXDIECYYCR 797
            S L  ++ RK + + +A   Q E L V      +                  +++CY C 
Sbjct: 175  SVLNEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGSQNHGRSKSRSKKNVKCYNCG 234

Query: 798  KPGHIRADCLKLKARDEKRE--KSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYL 971
            K GH++ +C   + R E +E   S+++  VAS ++  E L      + E  +    +  L
Sbjct: 235  KKGHVKKECWSNQKRREGKEPESSNAQGCVASTSDDGEIL------YSEATIVSEGRKRL 288

Query: 972  NDGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTL 1148
            +D W++DSGA++HM   ++ F TY  ++GG+V MGN +A +  G+GT++++   G I T+
Sbjct: 289  SDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTIRTI 348

Query: 1149 SEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGERH-GNLYFLRGDIV 1325
             EVRHV  L+K+L+SLG ++S G K   E G +K+     + M  E+   NL+ L+G+ +
Sbjct: 349  EEVRHVNGLKKNLLSLGQMDSHGCKTHVENGIMKIVKGALVLMKAEKICANLFMLKGETL 408

Query: 1326 CGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGK 1505
                    S  E   EST +WH++LGHMSE+G+ +LS + L  G K+  L FCEHC+  K
Sbjct: 409  QEADACVASNGE---ESTMMWHLKLGHMSEQGLKILSERKLPPGLKSVSLPFCEHCVTSK 465

Query: 1506 QCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNE 1685
            Q R  F  ++  ++ +LD IHSDVW  S  +S GGA++ VTFIDD+SRR W+Y +K K++
Sbjct: 466  QHRLKFSRSIARSKCILDLIHSDVW-ESPDISMGGAKYMVTFIDDYSRRCWVYPIKKKSD 524

Query: 1686 VTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGV 1865
            V  VFK++K  VE + G+ +K +R+DNGGEY +     FC+++GI R FTV  TPQQNGV
Sbjct: 525  VFPVFKEYKAWVELESGKKIKCLRTDNGGEYTDSEFLAFCKQEGIQRQFTVAYTPQQNGV 584

Query: 1866 AERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVN 2045
            AERMNRTL ER R ML  A L   +WAEA  TACY+VNRSPSTAI  K+ ME+WTG   +
Sbjct: 585  AERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNRSPSTAIGLKTAMEMWTGKPAD 644

Query: 2046 YSNLRVFGCPAY--FHVKE-DKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTF 2216
            YS L  FGCP Y  ++ +E  KL  +++K IFLGY  GVKGYRLW P  +K +ISRDV F
Sbjct: 645  YSYLHAFGCPVYVMYNAQERTKLDPKSRKCIFLGYADGVKGYRLWDPTAHKIVISRDVIF 704

Query: 2217 NERAMLDSKKSTDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXX 2396
             E    D  +  D D                 V+++   S T+                 
Sbjct: 705  VE----DQLQRKDGDDGT--------------VKEK---SETVPVYVENNPENSDSSEAA 743

Query: 2397 XXXSTQQQIEN-IPSLT-SQRERRPPT---RYGFDEYASYALSVFEDEPFTFEEAMSTTH 2561
                 Q+ +E+  P +  S RERRPPT    Y  +   +Y L   + EP TF EA+++  
Sbjct: 744  PEHEEQEPVESEAPEVRRSTRERRPPTWHSEYVTEINVAYCLLTEDGEPSTFHEALNSLD 803

Query: 2562 AIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVK-DGIPDSKGIVSGVRYKA 2738
               W TAM EE+++LHKN TWELV LP GRK IG KWVY +K DG    +      RY+A
Sbjct: 804  VALWMTAMQEEIEALHKNKTWELVPLPHGRKAIGNKWVYKIKRDGNDQVE------RYRA 857

Query: 2739 RLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDI 2918
            RLV KGYAQ+EG+D+NE+FSPVV+ T++R++LA  A FDL LEQLDVKTAFLHG LEE+I
Sbjct: 858  RLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEI 917

Query: 2919 YMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKK 3098
            YM QP G+   GKE+ VCRL KSLYGLKQ+PR WYKRFD+F++   Y R   D C Y+K+
Sbjct: 918  YMLQPEGFAETGKENLVCRLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCAYYKR 977

Query: 3099 FPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKG 3278
            F    F+ LLLYVDDML+A  +K  I  LK QL+ EFEMKDLGPA KILGM+I RDR+  
Sbjct: 978  FEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNR 1037

Query: 3279 KLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVG 3458
            K+ L+QK+YL+K+LRRF M + K+IS P+P   KLS  +CP+   E + MS+VPYA+AVG
Sbjct: 1038 KIWLSQKNYLKKILRRFNMQDCKSISTPLPVNFKLSSSMCPSNEAERKEMSRVPYASAVG 1097

Query: 3459 SLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKV 3638
            SLM+AM+CTRPD AQAVG VSRYMANPG  HW AVK ILRY+ GT ++ L +   +   V
Sbjct: 1098 SLMFAMICTRPDIAQAVGAVSRYMANPGGEHWIAVKRILRYIRGTSNVALCYGGSE-FTV 1156

Query: 3639 CGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEAL 3818
             G+VDSD+AGD DK +ST+GY FTL+GA +SW S LQ +VALSTTEAEY+A T+A KEA+
Sbjct: 1157 RGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKEAI 1216

Query: 3819 WLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLL 3998
            W++ L+++LG  Q+ + V CDSQSA+H+A+N  +H+RTKHI ++YH VREVV++G V L 
Sbjct: 1217 WIQRLLEELGHKQQKIPVFCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQ 1276

Query: 3999 KVDTEDNPADMLTKVVPKVKF 4061
            K+ T++N AD+LTK +   KF
Sbjct: 1277 KIHTKENLADVLTKSINTDKF 1297


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score = 1127 bits (2916), Expect = 0.0
 Identities = 613/1343 (45%), Positives = 839/1343 (62%), Gaps = 20/1343 (1%)
 Frame = +3

Query: 108  FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 287
            F+I KFNG +NF+ W+  +K IL     + AI  +PA    D TD+K  ++D  A + + 
Sbjct: 5    FEIPKFNG-SNFSLWKLKIKAILRKDNCLPAIDGRPA----DITDDKRKEMDDNAVANLH 59

Query: 288  LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 467
            L ++  +  + + + +AK +W+ L +LY  K L + ++LKRRL+ FRMS   SM DHIN 
Sbjct: 60   LAVADSVLSSIAEKKTAKKIWDTLIQLYEVKSLHNRIFLKRRLYTFRMSESTSMPDHINN 119

Query: 468  FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 647
             N + + LS    TI + +++ +LL SLP SYD  V  + +         D+L F+DV  
Sbjct: 120  LNTMFAQLSASDFTIGENERAEVLLQSLPDSYDQLVINITNNNI-----VDRLSFNDVAG 174

Query: 648  ALQAKALRKQEFSDEA----QVEGLFV------DXXXXXXXXXXXXXXXXXXDIECYYCR 797
            A+  +  R++   D      Q+E L V      +                  +++CY C 
Sbjct: 175  AILEEESRRKNKEDRQDSSKQMEALTVTRGRSTERGPSGSQNHGRSTSRRKTNLKCYNCG 234

Query: 798  KPGHIRADCLKLKARDEKR-EKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLN 974
            K GH++ DC   K   EK  E S S+  VAS ++  E L      + E  ++   K+ L 
Sbjct: 235  KRGHLKKDCWSNKKSGEKSSEASTSQGCVASTSDDGEVL------YSEAAVSTKGKNRLT 288

Query: 975  DGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLS 1151
            D W++DSGA++HM P +D F TY  V+ G V MGN +A + VG+GTV+++ + G I TL 
Sbjct: 289  DVWIVDSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDGTIRTLQ 348

Query: 1152 EVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGER-HGNLYFLRGDIVC 1328
            EVRHV +L K+L+S+G L+ LGYKY  + G LKV     + M  ++   NLY L GD   
Sbjct: 349  EVRHVKELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAKKVAANLYMLLGDT-- 406

Query: 1329 GGAMVSQSIDE-KQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGK 1505
               M   S+    Q E+T +WH RLGHMSE+G+ VL+ + L+ G K+  L FCEHC+  K
Sbjct: 407  -WQMADASVAVGSQEETTMMWHRRLGHMSERGLKVLAERNLIPGLKSVSLPFCEHCVISK 465

Query: 1506 QCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNE 1685
            Q R  F  +   ++ +LD IHSDVW  S  VS GGA++FV+FIDD+SRR+W+Y +K K+ 
Sbjct: 466  QHRLKFAKSTARSKHILDLIHSDVW-ESPEVSIGGAKYFVSFIDDYSRRLWVYPIKKKSG 524

Query: 1686 VTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGV 1865
            V  VFK++K  VE + G+ +K +R+DNGGEY +     FC+++GI R FTV  TPQQNGV
Sbjct: 525  VYSVFKEFKAQVELETGKRIKCLRTDNGGEYTDGDFLAFCKQEGITRQFTVAHTPQQNGV 584

Query: 1866 AERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVN 2045
            AERMNRTLLER R ML  A L K +WAEA  TACY++NRSPSTAI  K+PME+W G   +
Sbjct: 585  AERMNRTLLERTRAMLKTAGLAKSFWAEAAKTACYVINRSPSTAIGLKTPMEMWKGKPGD 644

Query: 2046 YSNLRVFGCPAYFHVKED---KLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTF 2216
            YS+LRVFGCP Y         KL  ++++  FLGY   VKGYRLW P   K  +SRDV F
Sbjct: 645  YSSLRVFGCPVYVMYNSQERTKLDPKSRRCTFLGYADNVKGYRLWDPTARKIFVSRDVIF 704

Query: 2217 NERAMLDSKKSTDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXX 2396
             E  +   +K+                      +     ++T+                 
Sbjct: 705  VENELQKEQKN----------------------DGTTKETATVEIEEKSGEENSEAEPEH 742

Query: 2397 XXXSTQQQIENIPSLTSQRERRPP--TRYGFDEYASYALSVFEDEPFTFEEAMSTTHAIE 2570
                  +  +  P  T+++ R+P   + Y    + +Y L   + EP TF EA++ + A  
Sbjct: 743  EEQEPNEVNDAEPRRTTRQIRKPSWHSEYVMASHDAYCLLSEDGEPSTFHEAVNGSDASL 802

Query: 2571 WKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVK-DGIPDSKGIVSGVRYKARLV 2747
            W  AM EE+++LH+N+TWELV+LPKGRK IG KWV+ +K DG    +      RY+ARLV
Sbjct: 803  WMAAMQEEIEALHRNNTWELVELPKGRKAIGNKWVFKIKRDGNDQVE------RYRARLV 856

Query: 2748 AKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMS 2927
             KGYAQ+EG+D+NE+FSPVV+ T+IR++LA  A F+L LEQLDVKTAFLHG LEE+IYM 
Sbjct: 857  VKGYAQKEGIDFNEIFSPVVRLTTIRIVLAMCAAFELHLEQLDVKTAFLHGELEEEIYML 916

Query: 2928 QPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPG 3107
            QP G+E   +E+ VCRL KSLYGLKQ+PR WYKRFD+F++   Y R   D C Y+K+F  
Sbjct: 917  QPEGFEEKERENLVCRLTKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCTYYKRFDD 976

Query: 3108 GSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLC 3287
            G F+ LLLYVDDML+   +K  +  LK QL+ EF+MKDLGPA KILGM+I RDR   K+ 
Sbjct: 977  GDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIW 1036

Query: 3288 LTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLM 3467
            L+QK+YL+KVLRRF M +   IS P+P   KLS  + P++  E   MS+VPYA+AVGSLM
Sbjct: 1037 LSQKNYLQKVLRRFNMQDYNPISTPLPVNYKLSSSMIPSSEAERMEMSRVPYASAVGSLM 1096

Query: 3468 YAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGF 3647
            YAM+CTRPD AQAVG VSR+MA+PG+ HW AVK ILRY+ GT    L F   +   + G+
Sbjct: 1097 YAMICTRPDIAQAVGTVSRFMADPGKEHWNAVKRILRYIRGTSGAALCFGGSE-FTIRGY 1155

Query: 3648 VDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALWLR 3827
            VDSD+AGD DK +ST+GY FTL+G  +SW S LQ +VALSTTEAEY+A T+A KEA+W +
Sbjct: 1156 VDSDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWTQ 1215

Query: 3828 GLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKVD 4007
             L+++LG  Q+ + V CDS SA+H+A+N  +H+RTKHI ++YH VREVV+ G V + K+ 
Sbjct: 1216 RLLEELGHKQQKITVYCDSPSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVNMQKIH 1275

Query: 4008 TEDNPADMLTKVVPKVKFERCLS 4076
            T+DN AD++TK +   KF  C S
Sbjct: 1276 TKDNLADVMTKPINSDKFIWCRS 1298


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score = 1116 bits (2887), Expect = 0.0
 Identities = 623/1349 (46%), Positives = 818/1349 (60%), Gaps = 24/1349 (1%)
 Frame = +3

Query: 108  FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 287
            +D+   +    F+ WQ  ++ +L       A+        +DW++++    D  A S I 
Sbjct: 41   YDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRT-QDWSNDE-KKKDRKAMSYIH 98

Query: 288  LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 467
            L LS +I      E +A  LW KLE++ + KDLTS+++LK++L   ++    S+MDH++ 
Sbjct: 99   LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLST 158

Query: 468  FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 647
            F +I +DL +I V   + D  +ILLCSLP SY  F D +L          D L+  +V  
Sbjct: 159  FKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSH-------DTLILKEVYD 211

Query: 648  ALQAKALRKQEFSDE---AQVEGLFVDXXXXXXXXXXXXXXXXXXDIE-----------C 785
            AL AK   K+    E   +Q EGL V                                 C
Sbjct: 212  ALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSC 271

Query: 786  YYCRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKS 965
             YC++ GH  ++C KL+ +D++  K   K       EG  A+        E ++     +
Sbjct: 272  KYCKRDGHDISECWKLQDKDKRTGKYIPKG--KKEEEGKAAVVTDEKSDTELLVAYAGCA 329

Query: 966  YLNDGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVIT 1142
              +D W+LD+  +YHMCP++D F TY  + GGTV+MG+   C+  G+GTVQ++   G I 
Sbjct: 330  QTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIR 389

Query: 1143 TLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGE-RHGNLYFLRGD 1319
            TLS+VRH+P+L++SLISL  L+  GYKY+   G LKV     + M  + +  NLY LRG 
Sbjct: 390  TLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGT 449

Query: 1320 IVCGG-AMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCI 1496
             + G  A VS S+     ++T LWHMRLGHMSE G++ LS + LL G+   KL FCEHCI
Sbjct: 450  TILGNVAAVSDSLSNS--DATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCI 507

Query: 1497 FGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKH 1676
            FGK  R  F T+ H T+G+LDY+HSD+WGP+   S GGAR+ +T +DD+SR+VW Y +KH
Sbjct: 508  FGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKH 567

Query: 1677 KNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQ 1856
            K +  +VFK+WKTMVE+Q  + VK +R+DNG E+     K +C+ +GIV H+TV  TPQQ
Sbjct: 568  KYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQ 627

Query: 1857 NGVAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGN 2036
            NGVAERMN  ++ +ARCMLSNA L K +WAEAV+T CYL+NRSPS A   K+P+EVW+G+
Sbjct: 628  NGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPIEVWSGS 687

Query: 2037 LVNYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTF 2216
              NYS+LRVFGC AY HV   KL  RA K IFLGYP GVKGY+LWCPE  K +ISR+V F
Sbjct: 688  PANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVF 747

Query: 2217 NERAMLDSKKSTDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXX 2396
            +E  +L  K ST+                 +QVE  + S                     
Sbjct: 748  HESVILHDKPSTN-------VPVESQEKASVQVEHLISSGHAPEKENVAINQDAPVIEDS 800

Query: 2397 XXXSTQQQIE-NIPSLTSQRERRPPTRYGFD-EYASYALSVFED-----EPFTFEEAMST 2555
                 QQ  + +I     +R  +PP RY  +    +YALSV E+     EP T+ EA+ +
Sbjct: 801  DSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVS 860

Query: 2556 THAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIVSGVRYK 2735
                 W TAM +EM+SL KNHTWE VKLPK +K I CKW++  K+G+  S       RYK
Sbjct: 861  DDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPS----DEARYK 916

Query: 2736 ARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEED 2915
            ARLVAKGY+Q  G+D+N+VFSP++KH+SIR LL  VA  D ELEQ+DVKTAFLHG LEED
Sbjct: 917  ARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEED 976

Query: 2916 IYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFK 3095
            IYM QP G+ V GKE+ VCRL+KSLYGLKQSPRQWYKRFD+FML QK+ RS YD CVY  
Sbjct: 977  IYMEQPEGFVVLGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYL- 1035

Query: 3096 KFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSK 3275
            K   GS +YLLLYVDDMLIAAK KSEI  LK QLS EF MKDLG AKKILGMEITR+R  
Sbjct: 1036 KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKKILGMEITRERHS 1095

Query: 3276 GKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAV 3455
            GKL L+QK Y++KVLRRF MH+ K I            +LCP +  ++E+MS+VPY++AV
Sbjct: 1096 GKLYLSQKGYIKKVLRRFNMHDVKPIIF----------RLCPQSDYDIEYMSRVPYSSAV 1145

Query: 3456 GSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLK 3635
            GSLMYAM     D     G V                                       
Sbjct: 1146 GSLMYAMFGRSRD-----GFV--------------------------------------- 1161

Query: 3636 VCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEA 3815
              G+VDSD+AGD D+ RS +GY FT+ G  +SW++ LQ  VALSTTEAEY+A++EA KEA
Sbjct: 1162 --GYVDSDFAGDLDRRRSLTGYVFTIGGCDVSWKASLQATVALSTTEAEYMAISEACKEA 1219

Query: 3816 LWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQL 3995
            +WLRGL  +L  +   + + CDSQSAI L K+Q++H RTKHID+RYH +R V+  G V++
Sbjct: 1220 IWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHIIRGVIVEGDVKV 1279

Query: 3996 LKVDTEDNPADMLTKVVPKVKFERCLSLI 4082
             K+ T DNPADM+TK V   KFE C SL+
Sbjct: 1280 CKISTHDNPADMMTKPVSATKFELCSSLV 1308


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score = 1105 bits (2857), Expect = 0.0
 Identities = 598/1339 (44%), Positives = 826/1339 (61%), Gaps = 39/1339 (2%)
 Frame = +3

Query: 162  VKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIRLCLSRDITHNFSSETSAK 341
            +K++L+  +  KAI+ KP  +    +D  W   +    S I L L+ ++  +     +AK
Sbjct: 1    MKNVLIQQETDKAIRTKPTNM----SDVLWTKKNKKTKSCIELHLADNVLLHIGETMTAK 56

Query: 342  VLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDT 521
              WE LE +Y  K + ++L LK +L   +M  G  + DHI +F    ++L  +   + D 
Sbjct: 57   EAWENLESVYKGKSIGNKLLLKEQLFGLKMEEGDDLNDHICKFQNCIANLEKVGAKMDDE 116

Query: 522  DKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVSALQA-----KALRKQEFS 686
            D +++LL SLPP +  F              K  ++F ++++  +        +R +   
Sbjct: 117  DTAVMLLHSLPPLFKHF--------------KTTMIFKELITLSKVCENPKSYIRLEREE 162

Query: 687  DEAQVEGLFVDXXXXXXXXXXXXXXXXXXDIE-----------CYYCRKPGHIRADCLKL 833
            D +Q  GL+V                     +           C+    P H + +C + 
Sbjct: 163  DSSQARGLYVRGKERGRSRNRGGGFQGRGMSKSKGKGKGKKDGCFIYGSPDHWKRNCKQW 222

Query: 834  KARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHM 1013
            K  ++K + S   + +A+V  G           D E+L +++ S     W LD+  ++H 
Sbjct: 223  K--EKKAQMSGESSQLANVVIGYN-------DEDGELLAISTSSGAPRHWTLDTACTFHT 273

Query: 1014 CPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLI 1190
            C  +D F TY+E N  +V+MGN +  + +G+G V++R H G++  L  VRH P L ++LI
Sbjct: 274  CAHRDWFDTYKEGNTRSVLMGNDSPSRIMGIGMVKIRMHDGIVRALGNVRHTPGLNRNLI 333

Query: 1191 SLGVLESLGYKYAAEYGFLKVFYNGSLKMTGE-RHGNLYFLRGDIVCGGAMVSQSIDEKQ 1367
            SL  ++ +G+ +  + G LKV     + M G  +  N+Y L G  V GGA V    D+  
Sbjct: 334  SLSTMDRVGFWHKGQNGVLKVGKGQMVYMKGAIQPDNMYKLTGSTVEGGAGVCTEEDK-- 391

Query: 1368 VESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGKQCRSSFG--TAVHH 1541
               T LW  RLGHMS++G+  L  K  L G  +  L+FC +C  GKQ R SF   ++ + 
Sbjct: 392  ---TELWRRRLGHMSQRGLQELHKKEQLDGVMSAALEFCRYCTLGKQTRVSFNLSSSENK 448

Query: 1542 TQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMV 1721
            ++G+LDYIH+DVWGPS T+SKGGAR+FV+FIDDFSR+VW++ MK KNEV   FK+WK  V
Sbjct: 449  SKGVLDYIHTDVWGPSATISKGGARYFVSFIDDFSRKVWIFFMKTKNEVFTKFKEWKAEV 508

Query: 1722 EKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGVAERMNRTLLERA 1901
              Q GR +K +RSDNGGEY +    + C+++GI RHFTVK +PQQNGVAERMNRTL+E+ 
Sbjct: 509  GNQTGRKIKCLRSDNGGEYRDKKFLQLCKDEGITRHFTVKKSPQQNGVAERMNRTLMEKE 568

Query: 1902 RCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAY 2081
            R M  +A L + +WAEA N ACYL+NRSPS AI  K   EVW+G  V+YSNLRVFGC AY
Sbjct: 569  RSMRFHAGLPEEFWAEAANHACYLINRSPSRAINFKCAEEVWSGKPVDYSNLRVFGCSAY 628

Query: 2082 FHVKED---KLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNERAMLDSK--K 2246
             H+ +D   KL  ++ + +F+G+  GVKGY+LW     K +ISRDV F+ER  +     K
Sbjct: 629  AHIPKDERTKLEPKSLECLFIGFEKGVKGYKLWDIVNEKKVISRDVVFDEREAISISLAK 688

Query: 2247 STDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXXXXSTQQQIE 2426
             +  DS+              QVEQ    +  +                      + Q  
Sbjct: 689  PSVADSEA-------------QVEQNEQGNDEVAIEEPEHQQQPTVMAQVEQSPQRGQNS 735

Query: 2427 NIPSLTS-----------QRERRPPTRYGFD--EYASYALSVFEDEPFTFEEAMSTTHAI 2567
             IP               +R R+P  R+GF+  E  S ALS+ + +P T+E+A+ +  + 
Sbjct: 736  PIPQAPESFKRSIALDKPKRNRKPIQRFGFEPEEDVSRALSISQGDPTTYEDAIESVESA 795

Query: 2568 EWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIVSGVRYKARLV 2747
             W  AM EEM+SLHKN  WELV  PK RK +GCKWV+  K+GI +   I     YKARLV
Sbjct: 796  GWIGAMTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHEDDAIT----YKARLV 851

Query: 2748 AKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMS 2927
            AKGY+Q+EGVDY+E+FSPVVKHTSIR+LL+  AQ+D+E+EQ+DVKTAFLHG+LEEDIYMS
Sbjct: 852  AKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMS 911

Query: 2928 QPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPG 3107
            QP G+   GKE+ VCRL+KSLYGLKQSPRQWYK FDT+ML+  YTR +YD CVY+  F  
Sbjct: 912  QPEGFVETGKENLVCRLKKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYDCCVYYHVFED 971

Query: 3108 GSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLC 3287
            G  + LLLYVDDMLIA +   +I  LKK+L  EF+MKDLG A+KILG+EI RDR+ GK+ 
Sbjct: 972  GKVILLLLYVDDMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQKILGIEIRRDRNAGKIW 1031

Query: 3288 LTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLM 3467
            L+Q+ Y+ K+L RF M  +K +S+P+ +  +LS +  P+  +E++ M  VPYA+AVG LM
Sbjct: 1032 LSQEKYIMKILERFNMAEAKVVSIPLAAHFRLSAEQRPSDQKEIDMMKNVPYASAVGCLM 1091

Query: 3468 YAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQ-SLKVCG 3644
            YAM+CTRPD AQA+ +VS+YM+NPG+ HW AVK I +YL  T  +G++FE+ Q    V G
Sbjct: 1092 YAMICTRPDLAQAMSVVSKYMSNPGKRHWEAVKWIFKYLKNTRQLGIMFERRQGEACVAG 1151

Query: 3645 FVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALWL 3824
            FVDSD+AGD D+ RST+GY FT  G P+SW++ LQ + ALSTTEAEY+A+TEA KEA+WL
Sbjct: 1152 FVDSDFAGDLDRRRSTAGYVFTCGGGPVSWKATLQAVTALSTTEAEYMALTEASKEAIWL 1211

Query: 3825 RGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKV 4004
             GL   LG+ Q  VVV CDSQSAIHLAKNQV+HARTKHID RYH++R+ V+ G++ + KV
Sbjct: 1212 NGLAGQLGVHQEGVVVKCDSQSAIHLAKNQVFHARTKHIDARYHRIRDWVEAGVIIVEKV 1271

Query: 4005 DTEDNPADMLTKVVPKVKF 4061
             T+DN AD LTK V   K+
Sbjct: 1272 HTDDNAADFLTKPVSVEKY 1290


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score = 1103 bits (2853), Expect = 0.0
 Identities = 606/1320 (45%), Positives = 808/1320 (61%), Gaps = 30/1320 (2%)
 Frame = +3

Query: 108  FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 287
            FD+   N    F+ WQ  ++ IL                  +WT E+    D  A + I+
Sbjct: 3    FDLPLLNYDTRFSLWQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRK-DQKALALIQ 61

Query: 288  LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 467
            L L  DI     +E ++  LW KLE + + KDLTS++ +K +L   +M    S++ H+ E
Sbjct: 62   LHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAE 121

Query: 468  FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 647
            F KI +DL ++ V   D D  ++LLCSLP SY  F D +L  +       D+L   +V  
Sbjct: 122  FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSR-------DELTLKEVYD 174

Query: 648  ALQAKALRK----QEFSDEAQVEGLFVDXXXXXXXXXXXXXXXXXXDIE--------CYY 791
            ALQ K   K     + S  ++ E L V                              C Y
Sbjct: 175  ALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKFCVY 234

Query: 792  CRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYL 971
            C+   H   +C K++A+ E++ K D K  VAS A   +   D +  F   V         
Sbjct: 235  CKLKNHNIDECKKVQAK-ERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAG------- 286

Query: 972  NDGWMLDSGASYHMCPSKDCFTTYREVNGGTVM-MGNSNACKTVGVGTVQVRSH-GVITT 1145
            +D W+LDS  S+H+C  ++ F++Y+ V  G V+ MG+ N C  VG+G+VQ+++  G+  T
Sbjct: 287  HDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRT 346

Query: 1146 LSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGE-RHGNLYFLRGDI 1322
            L  VR++P + ++LISL  L++ GYKY+   G LKV     + + G+     LY LRG  
Sbjct: 347  LKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCT 406

Query: 1323 VCGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFG 1502
            + G    + +I   +   T LWHMRLGHMS  GM+ L  + LL G  + K+ FCEHCIFG
Sbjct: 407  LTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFG 466

Query: 1503 KQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKN 1682
            K  R  F T+VH T+G LDY+H+D+WGPS+  S GGAR+ +T IDD+SR+VW Y +KHK+
Sbjct: 467  KHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKD 526

Query: 1683 EVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNG 1862
            +    FK WK M+E+Q  R VK +R+DNGGE+      ++C ++GIVRH T+  TPQQNG
Sbjct: 527  DTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNG 586

Query: 1863 VAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLV 2042
            VAERMNRT++ RARCMLS+A ++K +WAEA +TACYL+NRSPS  +  K+P+EVW+G   
Sbjct: 587  VAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPA 646

Query: 2043 NYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNE 2222
            +YS L+VFGC AY HV   KL  RA K +FLGY  GVKGY+LW PE  K  +SR V FNE
Sbjct: 647  DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNE 706

Query: 2223 RAMLDSKKSTDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXXX 2402
              M  +   ++   +             MQVE     +                      
Sbjct: 707  SVMFTNSLPSEHVPE------KELQRMHMQVEHVDDDTGVQVEPVHEQDDHNNDVADDDA 760

Query: 2403 XSTQQQIENIPSLT---------SQRERRPPTRYGFD-EYASYALSVFED-----EPFTF 2537
                QQ   I  L          S+R  +PP R   +   + YALS  E      EP T+
Sbjct: 761  HDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATY 820

Query: 2538 EEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIV 2717
            +EA+    +  W +AM EEM+SL KN TWE+V LPK +K I CKW++  K+G+  S+   
Sbjct: 821  KEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEP-- 878

Query: 2718 SGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLH 2897
               +YKARLVA+GY+Q  GVDYN+VFSPVVKH+SIR  L+ VA  DLELEQLDVKTAFLH
Sbjct: 879  --PKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLH 936

Query: 2898 GNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYD 3077
            G LEEDIYM QP G+ V GKE YVC+L++SLYGLKQSPRQW KRFD+FML   + RSKYD
Sbjct: 937  GELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYD 996

Query: 3078 QCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEI 3257
             CVY K    GS +YLLLYVDDMLIAAKSK EI  LKK LS EF+MKDLG AKKILGMEI
Sbjct: 997  SCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEI 1055

Query: 3258 TRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKV 3437
            +RDR  G L L+Q +Y++KVL+RF M N+KA+S PI    KLS   CP+   E+E+MS+V
Sbjct: 1056 SRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRV 1115

Query: 3438 PYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFE 3617
            PY++AVGSLMYAMVC+RPD + A+ LVSRYM+NPG+ HW AV+ I RYL GT    L F 
Sbjct: 1116 PYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFG 1175

Query: 3618 KEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVT 3797
            +     + G+VDSDYA D D+ RS +GY FT+    +SWR+ LQ +VALSTTEAEY+A+ 
Sbjct: 1176 RTDK-GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAIC 1234

Query: 3798 EAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVD 3977
            EA KE +WL+GL  +L  ++  + ++CDS+SAI+L K+Q++H RTKHIDI+YH VR+V++
Sbjct: 1235 EACKELIWLKGLYAELSGVESCISLHCDSESAIYLTKDQMFHERTKHIDIKYHFVRDVIE 1294


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score = 1091 bits (2821), Expect = 0.0
 Identities = 607/1292 (46%), Positives = 802/1292 (62%), Gaps = 24/1292 (1%)
 Frame = +3

Query: 108  FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 287
            +D+   +    F+ WQ  ++ +L       A+        +DW++++    D  A S I 
Sbjct: 6    YDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRT-QDWSNDE-KKRDRKAISYIH 63

Query: 288  LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 467
            L LS +I      E +A  LW KLE++ + KDLTS+++LK++L   ++   +S+MDH++ 
Sbjct: 64   LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDESVMDHLSA 123

Query: 468  FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 647
            F +I +DL ++ V   + D  +ILLCSLP SY  F   +L  +       D L   +V  
Sbjct: 124  FKEIVADLESMEVKYDEDDLGLILLCSLPSSYANFRGTILYSR-------DTLTLKEVYD 176

Query: 648  ALQAKALRKQEFSDE---AQVEGLFVDXXXXXXXXXXXXXXXXXXDIE-----------C 785
            A  AK   K+  + E   +Q EGL V                                 C
Sbjct: 177  AFHAKEKMKKMVTSEGSNSQAEGLVVRGRQQKKNTKNQSRDKSSSSYRGRTKSRGRYKSC 236

Query: 786  YYCRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKS 965
             YC++ GH  ++C KL+ +D++  K   K       EG  A+             VT + 
Sbjct: 237  KYCKRDGHDISECWKLQDKDKRTGKYIPKG--KKEEEGKAAV-------------VTDEK 281

Query: 966  YLNDGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVIT 1142
              +D  +L + A       +D F TY  + GGTV+MG+   C+  G+GTVQ++   G I 
Sbjct: 282  --SDAELLVAYAGCAQTSDQDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIR 339

Query: 1143 TLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGE-RHGNLYFLRGD 1319
            TLS+V+H+P+L++SLISL             YG LKV     + M  + +  NLY LRG 
Sbjct: 340  TLSDVQHIPNLKRSLISL-------------YGILKVTKGSLVVMKVDIKSANLYHLRGT 386

Query: 1320 IVCGG-AMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCI 1496
             + G  A V  S+     ++T LWHMRLGHMSE G++ LS +GLL G+   KL FCEHCI
Sbjct: 387  TILGNVAAVFDSLSNS--DATNLWHMRLGHMSEIGLAELSKRGLLDGQSIRKLKFCEHCI 444

Query: 1497 FGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKH 1676
            FGK  R  F T+ H T+G+LDY+HSD+WGP+   S GGAR+ +T +DD+SR+VW Y +KH
Sbjct: 445  FGKHKRVKFNTSTHTTEGILDYVHSDLWGPAHKTSFGGARYMMTIVDDYSRKVWPYFLKH 504

Query: 1677 KNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQ 1856
            K +  + FK+WKTMVE+Q  R VK +R+DNG E+     K +C+ +GIV H+T   TPQQ
Sbjct: 505  KYQAFDGFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVCHYTAPHTPQQ 564

Query: 1857 NGVAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGN 2036
            N VAERMNRT++ +ARCMLSNA L K +WAEAV+TACYL+NRSP  AI  K+P+EVW+G+
Sbjct: 565  NDVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIEVWSGS 624

Query: 2037 LVNYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTF 2216
              NYS+LRVFGC AY HV   KL  RA K IFLGY  GVKGY+LWCPE  K +ISR+V F
Sbjct: 625  PTNYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYASGVKGYKLWCPETKKVVISRNVVF 684

Query: 2217 NERAMLDSKKSTDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXX 2396
            +E  +L  K ST+   +             +QVE  + S                     
Sbjct: 685  HESVILHDKPSTNVPVE-------SQEKASVQVEHLISSGHAPEKEDVAINQDAPVIEDS 737

Query: 2397 XXXSTQQQIE-NIPSLTSQRERRPPTRYGFD-EYASYALSVFED-----EPFTFEEAMST 2555
                  Q  + +I     +R  +PP RY  + +  +YALSV E      EP T+ EA+ +
Sbjct: 738  DSSIVHQSPKRSIAKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAIVS 797

Query: 2556 THAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIVSGVRYK 2735
                 W TAM +EM+SL KNHTWELVKLPK +K I CKW++  K+G+  S       RYK
Sbjct: 798  DDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPS----DEARYK 853

Query: 2736 ARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEED 2915
            ARLVAKGY+Q  G+D+N+VFSPVVKH+SIR LL  VA  D ELEQ++VKTAFLHG LEED
Sbjct: 854  ARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELEED 913

Query: 2916 IYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFK 3095
            IYM QP G+ V GKE+ VCRL+KSLYGLKQSPRQWYKRFD+FML QK+  S YD CVY K
Sbjct: 914  IYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRISNYDSCVYLK 973

Query: 3096 KFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSK 3275
               G S +YLLLYVDDMLIAAK KSEI+ LK QLS EFEMKDLG AKKILGMEITR+R  
Sbjct: 974  VVDG-SVIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHS 1032

Query: 3276 GKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAV 3455
            GKL L+QK Y+EKVLRRF MH++K +S P+ +  +LS  LCP +  ++E+MS+VPY++AV
Sbjct: 1033 GKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPLSDYDIEYMSRVPYSSAV 1092

Query: 3456 GSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLK 3635
            GSLMYAMVC RPD + A+ +V+RYMANPG+ HW AV+ I RYL GT    L FE+ +   
Sbjct: 1093 GSLMYAMVCCRPDLSHALSVVNRYMANPGKEHWKAVQWIFRYLRGTSSACLQFERSRD-G 1151

Query: 3636 VCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEA 3815
            + G+VDSD+AGD D+ RS +GY FT+ G  +SW++ LQ  VALSTTEAEY+A+ EA KEA
Sbjct: 1152 LVGYVDSDFAGDLDRRRSITGYVFTIGGCAVSWKASLQATVALSTTEAEYMAIFEACKEA 1211

Query: 3816 LWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKN 3911
            +WLRGL  +L  +   + + CDSQSAI+L K+
Sbjct: 1212 IWLRGLYTELCGVTSCINIFCDSQSAIYLTKD 1243


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score = 1084 bits (2804), Expect = 0.0
 Identities = 595/1340 (44%), Positives = 834/1340 (62%), Gaps = 17/1340 (1%)
 Frame = +3

Query: 108  FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEK-WADLDLMACSTI 284
            F+I KFNGKN F+ W+  VK IL     + AI  +P     D+TD+K W++++  A + +
Sbjct: 5    FEIEKFNGKN-FSLWKLKVKAILRKDNCLAAISERPV----DFTDDKKWSEMNEDAMADL 59

Query: 285  RLCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHIN 464
             L ++  +  +   + +A  +W+ L +LY  K L ++++LKR+L+  RMS   S+ +H+N
Sbjct: 60   YLSIADGVLSSIEEKKTANEIWDHLNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTEHLN 119

Query: 465  EFNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVV 644
              N + S L+++S  I   +++ +LL SLP SYD  +  L +         D LVFDDV 
Sbjct: 120  TLNTLFSQLTSLSCKIEPQERAELLLQSLPDSYDQLIINLTNNILT-----DYLVFDDVA 174

Query: 645  SALQAKALRKQEFSDEA----QVEGLFV---DXXXXXXXXXXXXXXXXXXDIECYYCRKP 803
            +A+  +  R++   D      Q E L V                      ++ CY C K 
Sbjct: 175  AAVLEEESRRKNKEDRQVNLQQAEALTVMRGRSTERGQSSGRGRSKSSKKNLTCYNCGKK 234

Query: 804  GHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLNDGW 983
            GH++ DC  L       + S+ +  VAS ++   AL    C   E  +    +    D W
Sbjct: 235  GHLKKDCWNLA------QNSNPQGNVASTSDDGSAL---CC---EASIAREGRKRFADIW 282

Query: 984  MLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLSEVR 1160
            ++DSGA+YHM   K+ F  Y  ++GG+V   + +A + +G+GT++++ + G + T+ +VR
Sbjct: 283  LIDSGATYHMTSRKEWFHHYEPISGGSVYSCDDHALEIIGIGTIKLKMYDGTVQTVQDVR 342

Query: 1161 HVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGER-HGNLYFLRGDIVCGGA 1337
            HV  L+K+L+S G+L++   +   + G +K+F    + M GE+   NLY L+G+ +    
Sbjct: 343  HVKGLKKNLLSYGILDNSATQIETQKGVMKIFQGALVVMKGEKIAANLYMLKGETL---Q 399

Query: 1338 MVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGKQCRS 1517
                S+     +ST LWH +LGHMS++GM +L  + L+ G     L  CEHCI  KQ R 
Sbjct: 400  EAEASVAACSPDSTLLWHQKLGHMSDQGMKILVEQKLIPGLTKVSLPLCEHCITSKQHRL 459

Query: 1518 SFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNEVTEV 1697
             F T+    + +L+ +HSDVW  +   S GGA++FV+FIDD+SRR W+Y +K K++V   
Sbjct: 460  KFSTSNSRGKVVLELVHSDVW-QAPVPSLGGAKYFVSFIDDYSRRCWVYPIKKKSDVFAT 518

Query: 1698 FKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGVAERM 1877
            FK +K  VE   G+ +K  R+DNGGEY  +   +FC+++GI R FTV  TPQQNGVAERM
Sbjct: 519  FKAFKARVELDSGKKIKCFRTDNGGEYTSEEFDDFCKKEGIKRQFTVAYTPQQNGVAERM 578

Query: 1878 NRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVNYSNL 2057
            NRTLLER R ML  A L+K +WAEAVNTACYLVNR+PSTAI+ K+PME+WTG  V+YSNL
Sbjct: 579  NRTLLERTRAMLRAAGLEKSFWAEAVNTACYLVNRAPSTAIELKTPMEMWTGKPVDYSNL 638

Query: 2058 RVFGCPAY--FHVKE-DKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNERA 2228
             +FG   Y  ++ +E  KL  +++K  FLGY  GVKGYRLW P  +K +ISRDV F E  
Sbjct: 639  HIFGSIVYAMYNAQEITKLDPKSRKCRFLGYADGVKGYRLWDPTAHKVVISRDVIFVEDR 698

Query: 2229 MLDSKKSTDWDSQIXXXXXXXXXXXXMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXXXXS 2408
            +   +     + +             +QVE+     S+                      
Sbjct: 699  LQRGEVDDSTEKE-------KPETTQIQVEEEFEQDSS--------------EAEPAHEE 737

Query: 2409 TQQQIENIPSLT-SQRERRPPT---RYGFDEYASYALSVFEDEPFTFEEAMSTTHAIEWK 2576
             + +    P+   S RE+R PT    Y  +   +Y L   + EP TF+EA++++   +W 
Sbjct: 738  PEPESSGAPTTRQSDREKRRPTWHSDYVMEGNVAYCLLTEDGEPSTFQEAINSSDVSQWT 797

Query: 2577 TAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIVSGVRYKARLVAKG 2756
             AM EE+++LHKN+TW+LV LP+GRK IG KWV+ +K    D        RY+ARLV KG
Sbjct: 798  AAMQEEIEALHKNNTWDLVPLPQGRKPIGNKWVFKIKRNGDDQVE-----RYRARLVVKG 852

Query: 2757 YAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQPI 2936
            YAQ+EG+D+NE+FSPVV+ T++RV+LA  A F+L LEQLDVKTAFLHG+LEE+IYM QP 
Sbjct: 853  YAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFNLHLEQLDVKTAFLHGDLEEEIYMLQPE 912

Query: 2937 GYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGSF 3116
            G+E    ++ VCRL KSLYGLKQ+PR WYKRFD+F++   Y R   D C YFK+F   +F
Sbjct: 913  GFEDKENQNLVCRLNKSLYGLKQAPRCWYKRFDSFIMCLGYNRLNADPCAYFKRFGKDNF 972

Query: 3117 VYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLTQ 3296
            V LLLYVDDML+A  +K  ID LK QL+ EFEMKDLGPA KILGM+I RDR   K+ L+Q
Sbjct: 973  VILLLYVDDMLVAGPNKDHIDELKAQLAREFEMKDLGPANKILGMQIHRDRGNRKIWLSQ 1032

Query: 3297 KSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYAM 3476
            K+YL+K+L RF M + K+IS P+P  +K+S  + P+  E    MS+VPYA+AVGSLM+AM
Sbjct: 1033 KNYLKKILSRFSMQDCKSISTPLPINLKVSSSMSPSNEEGRMEMSRVPYASAVGSLMFAM 1092

Query: 3477 VCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVDS 3656
            +CTRPD AQAVG+VSRYMANPGR HW  VK ILRY+ GT D+ L +     + + G+VDS
Sbjct: 1093 ICTRPDIAQAVGVVSRYMANPGREHWNCVKRILRYIKGTSDVALCYGGSDFI-INGYVDS 1151

Query: 3657 DYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGLV 3836
            DYAGD DK +ST+GY F ++G  +SW S LQ +VA STTEAEY+A T+A KEA+WL+ L+
Sbjct: 1152 DYAGDLDKSKSTTGYVFKVAGGAVSWVSKLQAVVATSTTEAEYVAATQASKEAIWLKMLL 1211

Query: 3837 KDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTED 4016
            ++LG  Q  V + CDSQSA+HLA+N  +H+RTKHI ++YH +RE V  G V L K+ T D
Sbjct: 1212 EELGHKQEFVSLFCDSQSALHLARNPAFHSRTKHIRVQYHFIREKVKEGTVDLQKIHTAD 1271

Query: 4017 NPADMLTKVVPKVKFERCLS 4076
            N AD LTK++   KF  C S
Sbjct: 1272 NVADFLTKIINVDKFTWCRS 1291