BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver25_contig00002719
         (988 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, put...   172   1e-40
ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, put...   172   1e-40
ref|XP_006411250.1| hypothetical protein EUTSA_v10016128mg [Eutr...   158   3e-40
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub...   169   2e-39
emb|CBI40152.3| unnamed protein product [Vitis vinifera]              167   5e-39
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   167   5e-39
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   166   1e-38
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no...   164   5e-38
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub...   164   5e-38
ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   164   7e-38
gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycope...   164   7e-38
ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Caps...   155   1e-37
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi...   155   1e-37
ref|XP_007133762.1| hypothetical protein PHAVU_011G206900g [Phas...   163   1e-37
ref|XP_002299207.2| hypothetical protein POPTR_0001s06460g [Popu...   162   2e-37
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub...   162   2e-37
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub...   161   3e-37
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub...   161   3e-37
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu...   160   6e-37
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th...   152   8e-37

>ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, putative isoform 3
            [Theobroma cacao] gi|508727914|gb|EOY19811.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            3 [Theobroma cacao]
          Length = 1675

 Score =  172 bits (437), Expect = 1e-40
 Identities = 91/148 (61%), Positives = 114/148 (77%), Gaps = 14/148 (9%)
 Frame = +2

Query: 380  RLTTSIRMVAKGVLKEHLIHVANSMTCTGNLIGFNTGGYKALFRSLSVQIPFTEATLFTP 559
            RL+TS+ MVA+GVLKEHLI +ANSMTC GNLIGFN+GGYKAL RSL++Q+PF+EATLFTP
Sbjct: 1130 RLSTSVSMVARGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTP 1189

Query: 560  RKCFEKAAEKCPLDSLSSTVASCSFGKRVPVGTGSRFEIVEQERDGTQSKCSG-----YL 724
            RKCFE+AAEKC +DSLSS VASCS+GK V VGTGSRF+++   ++    + SG     +L
Sbjct: 1190 RKCFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNFL 1249

Query: 725  QL--------SPDRCLGEEVDD-MELEN 781
             +        S   CLGEEVDD M+++N
Sbjct: 1250 HMLSSASGPSSTTTCLGEEVDDLMDVDN 1277


>ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
            [Theobroma cacao] gi|590569189|ref|XP_007011000.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727912|gb|EOY19809.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727913|gb|EOY19810.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao]
          Length = 1788

 Score =  172 bits (437), Expect = 1e-40
 Identities = 91/148 (61%), Positives = 114/148 (77%), Gaps = 14/148 (9%)
 Frame = +2

Query: 380  RLTTSIRMVAKGVLKEHLIHVANSMTCTGNLIGFNTGGYKALFRSLSVQIPFTEATLFTP 559
            RL+TS+ MVA+GVLKEHLI +ANSMTC GNLIGFN+GGYKAL RSL++Q+PF+EATLFTP
Sbjct: 1130 RLSTSVSMVARGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTP 1189

Query: 560  RKCFEKAAEKCPLDSLSSTVASCSFGKRVPVGTGSRFEIVEQERDGTQSKCSG-----YL 724
            RKCFE+AAEKC +DSLSS VASCS+GK V VGTGSRF+++   ++    + SG     +L
Sbjct: 1190 RKCFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNFL 1249

Query: 725  QL--------SPDRCLGEEVDD-MELEN 781
             +        S   CLGEEVDD M+++N
Sbjct: 1250 HMLSSASGPSSTTTCLGEEVDDLMDVDN 1277


>ref|XP_006411250.1| hypothetical protein EUTSA_v10016128mg [Eutrema salsugineum]
            gi|557112419|gb|ESQ52703.1| hypothetical protein
            EUTSA_v10016128mg [Eutrema salsugineum]
          Length = 1874

 Score =  158 bits (399), Expect(2) = 3e-40
 Identities = 73/105 (69%), Positives = 93/105 (88%)
 Frame = +2

Query: 380  RLTTSIRMVAKGVLKEHLIHVANSMTCTGNLIGFNTGGYKALFRSLSVQIPFTEATLFTP 559
            RL+ S+RMV+KGVLKEH+I VAN+MTC+GN++GFN+GGYKAL RSL+++ PFTEATL TP
Sbjct: 1131 RLSASVRMVSKGVLKEHIILVANNMTCSGNMLGFNSGGYKALTRSLNIKAPFTEATLITP 1190

Query: 560  RKCFEKAAEKCPLDSLSSTVASCSFGKRVPVGTGSRFEIVEQERD 694
            RKCFEKAAEKC  DSLS+ V SCS+GKRV VGTGS+FE++  +++
Sbjct: 1191 RKCFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSKFELLWNKKE 1235



 Score = 35.0 bits (79), Expect(2) = 3e-40
 Identities = 15/23 (65%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = +3

Query: 675  LWNKKEMGL-NQNAVDIYNFLQI 740
            LWNKKE GL N+N  D+Y+FLQ+
Sbjct: 1230 LWNKKETGLENENETDVYSFLQM 1252


>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
            sinensis]
          Length = 1865

 Score =  169 bits (427), Expect = 2e-39
 Identities = 90/147 (61%), Positives = 109/147 (74%), Gaps = 14/147 (9%)
 Frame = +2

Query: 380  RLTTSIRMVAKGVLKEHLIHVANSMTCTGNLIGFNTGGYKALFRSLSVQIPFTEATLFTP 559
            RL+ S+ MVAKGVLKEHLI +ANSMTC G+L+GFN+GGYKAL RSL+VQ+PFTEATLFTP
Sbjct: 1132 RLSASVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFTP 1191

Query: 560  RKCFEKAAEKCPLDSLSSTVASCSFGKRVPVGTGSRFEIVEQ-------ERDGT------ 700
            RKCFEKAAEKC  D+LSS VA+CS+GK V VGTGSRF+++ Q       + DG       
Sbjct: 1192 RKCFEKAAEKCHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFL 1251

Query: 701  -QSKCSGYLQLSPDRCLGEEVDDMELE 778
               + S  ++ S   CLGEEVD +E E
Sbjct: 1252 HMVRSSTGIEESDTGCLGEEVDGLEDE 1278


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  167 bits (424), Expect = 5e-39
 Identities = 90/148 (60%), Positives = 111/148 (75%), Gaps = 14/148 (9%)
 Frame = +2

Query: 380  RLTTSIRMVAKGVLKEHLIHVANSMTCTGNLIGFNTGGYKALFRSLSVQIPFTEATLFTP 559
            RL+ S+ MVAKGVLKEHLI +ANSMTC GNLIGFN+GGYKAL R+L++Q+PFTEATLFTP
Sbjct: 1194 RLSKSVTMVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTP 1253

Query: 560  RKCFEKAAEKCPLDSLSSTVASCSFGKRVPVGTGSRFEIVEQERDGTQSKCSG-----YL 724
            RKCFEKA+EKC  DSLSS VASCS+GK V VGTGSRF+++   ++   ++  G     +L
Sbjct: 1254 RKCFEKASEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFL 1313

Query: 725  QL--------SPD-RCLGEEVDDMELEN 781
             L         PD  CLG EV+D+ LE+
Sbjct: 1314 HLVRSGSYGKEPDTACLGAEVEDLILED 1341


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  167 bits (424), Expect = 5e-39
 Identities = 90/148 (60%), Positives = 111/148 (75%), Gaps = 14/148 (9%)
 Frame = +2

Query: 380  RLTTSIRMVAKGVLKEHLIHVANSMTCTGNLIGFNTGGYKALFRSLSVQIPFTEATLFTP 559
            RL+ S+ MVAKGVLKEHLI +ANSMTC GNLIGFN+GGYKAL R+L++Q+PFTEATLFTP
Sbjct: 1134 RLSKSVTMVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTP 1193

Query: 560  RKCFEKAAEKCPLDSLSSTVASCSFGKRVPVGTGSRFEIVEQERDGTQSKCSG-----YL 724
            RKCFEKA+EKC  DSLSS VASCS+GK V VGTGSRF+++   ++   ++  G     +L
Sbjct: 1194 RKCFEKASEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFL 1253

Query: 725  QL--------SPD-RCLGEEVDDMELEN 781
             L         PD  CLG EV+D+ LE+
Sbjct: 1254 HLVRSGSYGKEPDTACLGAEVEDLILED 1281


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score =  166 bits (420), Expect = 1e-38
 Identities = 87/147 (59%), Positives = 110/147 (74%), Gaps = 13/147 (8%)
 Frame = +2

Query: 380  RLTTSIRMVAKGVLKEHLIHVANSMTCTGNLIGFNTGGYKALFRSLSVQIPFTEATLFTP 559
            RL+ S+ MV+KGVL +HLI +ANSMTCTGN+IGFN+GGYKAL R+L++Q+PFTEATLFTP
Sbjct: 1129 RLSKSVSMVSKGVLGDHLILLANSMTCTGNMIGFNSGGYKALSRALNIQVPFTEATLFTP 1188

Query: 560  RKCFEKAAEKCPLDSLSSTVASCSFGKRVPVGTGSRFEIV-EQERDGTQSK--------- 709
            RKCFEKAAEKC  DSLSS VASCS+GK V VGTGSRF+I+ +Q+  G +           
Sbjct: 1189 RKCFEKAAEKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWDQKELGCKQDDVVDVYNFL 1248

Query: 710  ---CSGYLQLSPDRCLGEEVDDMELEN 781
                SG  +     CLGEE++D+ +E+
Sbjct: 1249 HMVRSGKSEEPTSACLGEEIEDIMVED 1275


>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
          Length = 2054

 Score =  164 bits (415), Expect = 5e-38
 Identities = 85/143 (59%), Positives = 106/143 (74%), Gaps = 13/143 (9%)
 Frame = +2

Query: 380  RLTTSIRMVAKGVLKEHLIHVANSMTCTGNLIGFNTGGYKALFRSLSVQIPFTEATLFTP 559
            RL+TS+ MV+KGVLKEHLI +ANSMT  GNLIGFN+GGYKAL RSL+VQ+PFTEATL TP
Sbjct: 1131 RLSTSVSMVSKGVLKEHLILLANSMTYAGNLIGFNSGGYKALTRSLNVQVPFTEATLITP 1190

Query: 560  RKCFEKAAEKCPLDSLSSTVASCSFGKRVPVGTGSRFEIVEQERDGTQSKCSG------- 718
            ++CFE+AAEKC +DSL+S VASCS+GK V VGTGSRF+I+   R    ++  G       
Sbjct: 1191 KRCFERAAEKCHVDSLTSIVASCSWGKHVAVGTGSRFDILWDTRKVEFNQAGGVDVNNFL 1250

Query: 719  ------YLQLSPDRCLGEEVDDM 769
                  Y + +   CLGEE+DD+
Sbjct: 1251 HMVSTAYGEEASTACLGEEIDDL 1273


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2020

 Score =  164 bits (415), Expect = 5e-38
 Identities = 82/144 (56%), Positives = 106/144 (73%), Gaps = 14/144 (9%)
 Frame = +2

Query: 380  RLTTSIRMVAKGVLKEHLIHVANSMTCTGNLIGFNTGGYKALFRSLSVQIPFTEATLFTP 559
            R+  S++MVAKGVL+EHLI +A+SMTC GNL+GFNTGGYKAL R L++Q+PFT+ATLFTP
Sbjct: 1131 RVAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALSRQLNIQVPFTDATLFTP 1190

Query: 560  RKCFEKAAEKCPLDSLSSTVASCSFGKRVPVGTGSRFEIVEQERDGTQSKCSG-----YL 724
            +KCFE+AAEKC  DSLSS VASCS+GK V VGTGS+F+IV    +   ++  G     +L
Sbjct: 1191 KKCFERAAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDIVWDSSEIKSNEIEGMDVYSFL 1250

Query: 725  QL---------SPDRCLGEEVDDM 769
             +           D CLGE++DD+
Sbjct: 1251 HMVKSVTNGEEETDACLGEDIDDL 1274


>ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1 [Solanum lycopersicum]
          Length = 1632

 Score =  164 bits (414), Expect = 7e-38
 Identities = 84/145 (57%), Positives = 105/145 (72%), Gaps = 14/145 (9%)
 Frame = +2

Query: 380  RLTTSIRMVAKGVLKEHLIHVANSMTCTGNLIGFNTGGYKALFRSLSVQIPFTEATLFTP 559
            RL+TS+ MV KGVLK+HL+ +ANSMTC GNL+GFN GG KAL RSL+VQIPFTEATLFTP
Sbjct: 1134 RLSTSVTMVTKGVLKDHLVLLANSMTCAGNLVGFNAGGIKALSRSLNVQIPFTEATLFTP 1193

Query: 560  RKCFEKAAEKCPLDSLSSTVASCSFGKRVPVGTGSRFEIVEQERDGTQS----------- 706
            RKCFE+AAEKC +DSLSS VASCS+GK V VGTGSRFE++   R+   +           
Sbjct: 1194 RKCFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFEVLLNTRNVEWNIPDTRDVYSFL 1253

Query: 707  ---KCSGYLQLSPDRCLGEEVDDME 772
               + +   ++    CLG E+D++E
Sbjct: 1254 HLVRNTSAQEVEGTSCLGAEIDELE 1278


>gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1127

 Score =  164 bits (414), Expect = 7e-38
 Identities = 84/145 (57%), Positives = 105/145 (72%), Gaps = 14/145 (9%)
 Frame = +2

Query: 380  RLTTSIRMVAKGVLKEHLIHVANSMTCTGNLIGFNTGGYKALFRSLSVQIPFTEATLFTP 559
            RL+TS+ MV KGVLK+HL+ +ANSMTC GNL+GFN GG KAL RSL+VQIPFTEATLFTP
Sbjct: 685  RLSTSVTMVTKGVLKDHLVLLANSMTCAGNLVGFNAGGIKALSRSLNVQIPFTEATLFTP 744

Query: 560  RKCFEKAAEKCPLDSLSSTVASCSFGKRVPVGTGSRFEIVEQERDGTQS----------- 706
            RKCFE+AAEKC +DSLSS VASCS+GK V VGTGSRFE++   R+   +           
Sbjct: 745  RKCFERAAEKCHVDSLSSIVASCSWGKHVAVGTGSRFEVLLNTRNVEWNIPDTRDVYSFL 804

Query: 707  ---KCSGYLQLSPDRCLGEEVDDME 772
               + +   ++    CLG E+D++E
Sbjct: 805  HLVRNTSAQEVEGTSCLGAEIDELE 829


>ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Capsella rubella]
            gi|482562261|gb|EOA26451.1| hypothetical protein
            CARUB_v10022497mg [Capsella rubella]
          Length = 1959

 Score =  155 bits (393), Expect(2) = 1e-37
 Identities = 71/105 (67%), Positives = 93/105 (88%)
 Frame = +2

Query: 380  RLTTSIRMVAKGVLKEHLIHVANSMTCTGNLIGFNTGGYKALFRSLSVQIPFTEATLFTP 559
            RL+ S++MV+KGVLKEH+I +AN+MTC+GN++GFN+GGYKAL RSL+++ PFTEATL TP
Sbjct: 1131 RLSASVKMVSKGVLKEHIILLANNMTCSGNMLGFNSGGYKALTRSLNIKAPFTEATLITP 1190

Query: 560  RKCFEKAAEKCPLDSLSSTVASCSFGKRVPVGTGSRFEIVEQERD 694
            RKCFEKAAEKC  DSLS+ V SCS+GKRV VGTGS+FE++  +++
Sbjct: 1191 RKCFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKE 1235



 Score = 28.9 bits (63), Expect(2) = 1e-37
 Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +3

Query: 675  LWNKKEMGL-NQNAVDIYNFLQI 740
            LWN+KE GL ++   D+Y+FLQ+
Sbjct: 1230 LWNQKETGLDDKEETDVYSFLQM 1252


>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
            NRPD1b [Arabidopsis lyrata subsp. lyrata]
          Length = 1947

 Score =  155 bits (393), Expect(2) = 1e-37
 Identities = 71/105 (67%), Positives = 93/105 (88%)
 Frame = +2

Query: 380  RLTTSIRMVAKGVLKEHLIHVANSMTCTGNLIGFNTGGYKALFRSLSVQIPFTEATLFTP 559
            RL+ S+RMV+KGVLKEH+I +AN+MTC+GN++GFN+GGYKAL RSL+++ PFTEATL TP
Sbjct: 1131 RLSASVRMVSKGVLKEHIILLANNMTCSGNMLGFNSGGYKALTRSLNIKAPFTEATLITP 1190

Query: 560  RKCFEKAAEKCPLDSLSSTVASCSFGKRVPVGTGSRFEIVEQERD 694
            R+CFEKAAEKC  DSLS+ V SCS+GKRV VGTGS+FE++  +++
Sbjct: 1191 RRCFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKE 1235



 Score = 28.9 bits (63), Expect(2) = 1e-37
 Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +3

Query: 675  LWNKKEMGL-NQNAVDIYNFLQI 740
            LWN+KE GL ++   D+Y+FLQ+
Sbjct: 1230 LWNQKETGLDDKEETDVYSFLQM 1252


>ref|XP_007133762.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
            gi|561006762|gb|ESW05756.1| hypothetical protein
            PHAVU_011G206900g [Phaseolus vulgaris]
          Length = 2052

 Score =  163 bits (412), Expect = 1e-37
 Identities = 85/149 (57%), Positives = 108/149 (72%), Gaps = 15/149 (10%)
 Frame = +2

Query: 380  RLTTSIRMVAKGVLKEHLIHVANSMTCTGNLIGFNTGGYKALFRSLSVQIPFTEATLFTP 559
            R+  S++MVAKGVL+EHLI +A+SMTC GN++GFNTGGYKAL R L++Q+PFT+ATLFTP
Sbjct: 1128 RVAASVKMVAKGVLREHLILLASSMTCGGNMVGFNTGGYKALSRQLNIQVPFTDATLFTP 1187

Query: 560  RKCFEKAAEKCPLDSLSSTVASCSFGKRVPVGTGSRFEIVEQERDGTQSKCSG-----YL 724
            +KCFE+AAEKC  DSLSS VASCS+GK V VGTGS+F+IV        S+  G     +L
Sbjct: 1188 KKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDIVWDANKIRSSEIEGMDVYSFL 1247

Query: 725  QL---------SPDRCLGEEVDD-MELEN 781
             +           D CLGE++DD +E EN
Sbjct: 1248 HMVKGRTDREEETDACLGEDIDDLLEEEN 1276


>ref|XP_002299207.2| hypothetical protein POPTR_0001s06460g [Populus trichocarpa]
           gi|550346662|gb|EEE84012.2| hypothetical protein
           POPTR_0001s06460g [Populus trichocarpa]
          Length = 888

 Score =  162 bits (410), Expect = 2e-37
 Identities = 87/148 (58%), Positives = 104/148 (70%), Gaps = 14/148 (9%)
 Frame = +2

Query: 380 RLTTSIRMVAKGVLKEHLIHVANSMTCTGNLIGFNTGGYKALFRSLSVQIPFTEATLFTP 559
           RL+ S+ MVAKGVLKEHLI + NSMTC G+LIGF TGGYK L RSL +Q+PFTEATLFTP
Sbjct: 103 RLSKSVTMVAKGVLKEHLILLGNSMTCAGSLIGFYTGGYKTLSRSLDIQVPFTEATLFTP 162

Query: 560 RKCFEKAAEKCPLDSLSSTVASCSFGKRVPVGTGSRFEIVEQERDGTQSKCSG-----YL 724
           RKCFEKAAEKC  D LSS VASCS+GK V VGTGSRF+++   ++   +   G     +L
Sbjct: 163 RKCFEKAAEKCHTDYLSSIVASCSWGKHVTVGTGSRFDVLWDTKEACLNPEGGIDAYSFL 222

Query: 725 QL---------SPDRCLGEEVDDMELEN 781
            +         S   CLG EVDD+ LE+
Sbjct: 223 NMVRSTAGGEESVTACLGAEVDDLILED 250


>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1991

 Score =  162 bits (410), Expect = 2e-37
 Identities = 77/113 (68%), Positives = 94/113 (83%)
 Frame = +2

Query: 380  RLTTSIRMVAKGVLKEHLIHVANSMTCTGNLIGFNTGGYKALFRSLSVQIPFTEATLFTP 559
            RL  ++ MVAKGVLKEHLI +ANSMTC GN +GFN GGYKAL R+L++Q+PFTEATLFTP
Sbjct: 1137 RLAKAVAMVAKGVLKEHLILLANSMTCAGNFVGFNPGGYKALSRALNIQVPFTEATLFTP 1196

Query: 560  RKCFEKAAEKCPLDSLSSTVASCSFGKRVPVGTGSRFEIVEQERDGTQSKCSG 718
            +KCFE+AAEKC +DSLSS VASCS+GK V VGTGSRFEI+   ++G  ++  G
Sbjct: 1197 KKCFERAAEKCHMDSLSSIVASCSWGKHVAVGTGSRFEILWDTKEGGLNEVGG 1249


>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2082

 Score =  161 bits (408), Expect = 3e-37
 Identities = 80/144 (55%), Positives = 105/144 (72%), Gaps = 14/144 (9%)
 Frame = +2

Query: 380  RLTTSIRMVAKGVLKEHLIHVANSMTCTGNLIGFNTGGYKALFRSLSVQIPFTEATLFTP 559
            R+  S++MVAKGVL+EHLI +A+SMTC GNL+GFN GGYKAL R L++Q+PFT+ATLFTP
Sbjct: 1131 RVAASVKMVAKGVLREHLILLASSMTCGGNLVGFNIGGYKALSRQLNIQVPFTDATLFTP 1190

Query: 560  RKCFEKAAEKCPLDSLSSTVASCSFGKRVPVGTGSRFEIVEQERDGTQSKCSG-----YL 724
            +KCFE+AAEKC  DSLSS VASCS+GK V VGTGS+F++V    +   ++  G     +L
Sbjct: 1191 KKCFERAAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDVVWDANEIKSNEIEGMDVYSFL 1250

Query: 725  QL---------SPDRCLGEEVDDM 769
             +           D CLGE++DD+
Sbjct: 1251 HMVKSFTNGEEETDACLGEDIDDL 1274


>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
            arietinum]
          Length = 2263

 Score =  161 bits (408), Expect = 3e-37
 Identities = 83/144 (57%), Positives = 105/144 (72%), Gaps = 14/144 (9%)
 Frame = +2

Query: 380  RLTTSIRMVAKGVLKEHLIHVANSMTCTGNLIGFNTGGYKALFRSLSVQIPFTEATLFTP 559
            RL  S+RMVAKGVL+EHLI +A+SMTC GNL+GFNTGGYK L R L++Q+PFT+ATLFTP
Sbjct: 1129 RLAASVRMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKTLARQLNIQVPFTDATLFTP 1188

Query: 560  RKCFEKAAEKCPLDSLSSTVASCSFGKRVPVGTGSRFEIVEQERDGTQSKCSG-----YL 724
            RKCFE+AAEK   DSLSS VASCS+GK V VGTGSRF+IV   ++   ++  G     +L
Sbjct: 1189 RKCFERAAEKRHADSLSSIVASCSWGKHVAVGTGSRFDIVWDPKEVKSNEIEGMDVYNFL 1248

Query: 725  QL---------SPDRCLGEEVDDM 769
             +           + CLGE++DD+
Sbjct: 1249 NMVKGLANGDEENNACLGEDIDDL 1272


>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
            gi|550343552|gb|EEE78905.2| hypothetical protein
            POPTR_0003s19630g [Populus trichocarpa]
          Length = 1920

 Score =  160 bits (406), Expect = 6e-37
 Identities = 86/150 (57%), Positives = 103/150 (68%), Gaps = 16/150 (10%)
 Frame = +2

Query: 380  RLTTSIRMVAKGVLKEHLIHVANSMTCTGNLIGFNTGGYKALFRSLSVQIPFTEATLFTP 559
            RL+ S+ MVAKGVLKEHLI + NSMTC G+LIGF TGGYK L RSL +Q+PFTEATLFTP
Sbjct: 1135 RLSKSVTMVAKGVLKEHLILLGNSMTCAGSLIGFYTGGYKTLSRSLDIQVPFTEATLFTP 1194

Query: 560  RKCFEKAAEKCPLDSLSSTVASCSFGKRVPVGTGSRFEIVEQERDG-------------- 697
            RKCFEKAAEKC  DSLSS VASC++GK V VGTGS F+++   ++               
Sbjct: 1195 RKCFEKAAEKCHTDSLSSIVASCAWGKHVTVGTGSHFDVLWDTKEACLNPEGSMDVYSFL 1254

Query: 698  --TQSKCSGYLQLSPDRCLGEEVDDMELEN 781
               +S   G  + S   CLG EVDD+ LE+
Sbjct: 1255 NMVRSTAGG--EESVTACLGAEVDDLMLED 1282


>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
          Length = 1976

 Score =  152 bits (385), Expect(2) = 8e-37
 Identities = 70/105 (66%), Positives = 91/105 (86%)
 Frame = +2

Query: 380  RLTTSIRMVAKGVLKEHLIHVANSMTCTGNLIGFNTGGYKALFRSLSVQIPFTEATLFTP 559
            RL+ S+RMV+KGVLKEH+I +AN+MTC+G ++GFN+GGYKAL RSL+++ PFTEATL  P
Sbjct: 1131 RLSASVRMVSKGVLKEHIILLANNMTCSGTMLGFNSGGYKALTRSLNIKAPFTEATLIAP 1190

Query: 560  RKCFEKAAEKCPLDSLSSTVASCSFGKRVPVGTGSRFEIVEQERD 694
            RKCFEKAAEKC  DSLS+ V SCS+GKRV VGTGS+FE++  +++
Sbjct: 1191 RKCFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKE 1235



 Score = 28.9 bits (63), Expect(2) = 8e-37
 Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +3

Query: 675  LWNKKEMGL-NQNAVDIYNFLQI 740
            LWN+KE GL ++   D+Y+FLQ+
Sbjct: 1230 LWNQKETGLDDKEETDVYSFLQM 1252