BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver25_contig00002127
         (1336 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   482   e-133
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   475   e-131
ref|XP_007159299.1| hypothetical protein PHAVU_002G226300g [Phas...   474   e-131
ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citr...   471   e-130
ref|XP_002316628.2| plus-3 domain-containing family protein [Pop...   471   e-130
ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma ...   470   e-130
ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prun...   470   e-130
ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein...   468   e-129
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   468   e-129
ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein...   467   e-129
gb|EXB82802.1| RNA polymerase-associated protein RTF1-like prote...   463   e-128
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...   463   e-128
ref|XP_002305685.1| plus-3 domain-containing family protein [Pop...   462   e-127
ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein...   457   e-126
ref|XP_004493842.1| PREDICTED: RNA polymerase-associated protein...   456   e-126
ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein...   452   e-124
ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [A...   449   e-123
ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein...   449   e-123
ref|XP_003625428.1| RNA polymerase-associated protein RTF1-like ...   443   e-122
ref|XP_003554309.1| PREDICTED: RNA polymerase-associated protein...   438   e-120

>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Glycine max] gi|571466984|ref|XP_006583809.1| PREDICTED:
            RNA polymerase-associated protein RTF1 homolog isoform X2
            [Glycine max]
          Length = 656

 Score =  482 bits (1240), Expect = e-133
 Identities = 247/378 (65%), Positives = 285/378 (75%)
 Frame = +3

Query: 3    IRRSKLSKWFMEPFFEDLIVGCMVRVGIGRKKNMAIYRLCMVKNVDASDPDKQYKMDNKY 182
            IRRSKL+KWFMEPFFE+LIVGC VRVGIGR K   IYRLCMVKNVDAS+PD+QYK++NK 
Sbjct: 279  IRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKT 338

Query: 183  THKYLNCVWGSDNSAARWQMIMISDSPPLESEFNEWMEELERKGGRKPSRQEVLEKQEAI 362
            T+KYLN VWG+++SAARWQM M+SDS PLE EF +W++E++R GGR PS+Q+VLEK++AI
Sbjct: 339  TYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPSKQDVLEKKQAI 398

Query: 363  QKALTYVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMDIAESRRDMGEVERIRARL 542
            QKA+T+VYSAATVKQMLQEKKSAS+RPLNVAAEKDRLRRE++IA+S+ D  EVERI+ RL
Sbjct: 399  QKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKYDEAEVERIKTRL 458

Query: 543  LELESSRQSKLKDTKALRLAEMNKKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTR 722
            LELE+SRQ+K KD KAL+LAEMN+KNR ENFKNASE+KPVNTGLKAGEAGYDPFSRRWTR
Sbjct: 459  LELEASRQAKQKDAKALKLAEMNRKNRFENFKNASEMKPVNTGLKAGEAGYDPFSRRWTR 518

Query: 723  SRNYYVPNATXXXXXXXXXXXXXXXXXXXXXXXSGSNXXXXXXXXXXXXXXXXXXXXXXD 902
            SRNYY                            +                         D
Sbjct: 519  SRNYYAAKPGEKAAAGNNSVNGNVAGAGSNGTGAPVTAEAGMVATAAALEAAAGAGKLVD 578

Query: 903  TNAPVDLGTESNSLHNFDLLISLTELQKXXXXXXXXXXXXXRKQRIEATVGKRVPENDGR 1082
            T+APVD GTESN LHNF+L ISL  LQK             RKQ+IEATVG RV ENDGR
Sbjct: 579  TSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQAGFMARKQKIEATVGFRVSENDGR 638

Query: 1083 RHSLTLTVSDYKRRRGLL 1136
            RH+LTLTVSDYKRRRGLL
Sbjct: 639  RHALTLTVSDYKRRRGLL 656


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  475 bits (1222), Expect = e-131
 Identities = 244/378 (64%), Positives = 282/378 (74%)
 Frame = +3

Query: 3    IRRSKLSKWFMEPFFEDLIVGCMVRVGIGRKKNMAIYRLCMVKNVDASDPDKQYKMDNKY 182
            IRRSKL+KWFMEPFFE+LIVGC VRVGIGR K   IYRLCMVKNVDAS+PD+QYK++NK 
Sbjct: 279  IRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKT 338

Query: 183  THKYLNCVWGSDNSAARWQMIMISDSPPLESEFNEWMEELERKGGRKPSRQEVLEKQEAI 362
            T+KYLN VWG+++SAARWQM M+SDS P+E EF +W++E++  GGR PS+Q+VLEK++AI
Sbjct: 339  TYKYLNVVWGNESSAARWQMAMVSDSAPMEEEFKQWVKEVDCSGGRMPSKQDVLEKKQAI 398

Query: 363  QKALTYVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMDIAESRRDMGEVERIRARL 542
            QKA+T+VYSAATVKQMLQEKKSAS+RPLNVAAEKDRLRRE++IA+S+ D  EVERI+ RL
Sbjct: 399  QKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVERIKTRL 458

Query: 543  LELESSRQSKLKDTKALRLAEMNKKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTR 722
             ELE+SRQ+K KD KAL+LAEMN+KNR ENFKNASELKPVN GLKAGEAGYDPFSRRWTR
Sbjct: 459  QELEASRQAKQKDAKALKLAEMNRKNRFENFKNASELKPVNIGLKAGEAGYDPFSRRWTR 518

Query: 723  SRNYYVPNATXXXXXXXXXXXXXXXXXXXXXXXSGSNXXXXXXXXXXXXXXXXXXXXXXD 902
            SRNYY                            +                         D
Sbjct: 519  SRNYYAAKPGEKAAAGNNIVNGNVAGAGSNATGAPVTAEAGMVATAAALEAAAGAGKLVD 578

Query: 903  TNAPVDLGTESNSLHNFDLLISLTELQKXXXXXXXXXXXXXRKQRIEATVGKRVPENDGR 1082
            T+APVD GTESN LHNF+L ISL  LQK             RKQRIE+TVG RV ENDGR
Sbjct: 579  TSAPVDQGTESNMLHNFELPISLALLQKYGGAPGAQAGFMARKQRIESTVGFRVSENDGR 638

Query: 1083 RHSLTLTVSDYKRRRGLL 1136
            RH+LTLTVSDYKRRRGLL
Sbjct: 639  RHALTLTVSDYKRRRGLL 656


>ref|XP_007159299.1| hypothetical protein PHAVU_002G226300g [Phaseolus vulgaris]
            gi|561032714|gb|ESW31293.1| hypothetical protein
            PHAVU_002G226300g [Phaseolus vulgaris]
          Length = 654

 Score =  474 bits (1221), Expect = e-131
 Identities = 245/378 (64%), Positives = 284/378 (75%)
 Frame = +3

Query: 3    IRRSKLSKWFMEPFFEDLIVGCMVRVGIGRKKNMAIYRLCMVKNVDASDPDKQYKMDNKY 182
            IRRSKL+KWFMEPFFE+LIVGC VRVGIGR K   IYRLCMVKNVDAS+PD+QYK++NK 
Sbjct: 280  IRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKT 339

Query: 183  THKYLNCVWGSDNSAARWQMIMISDSPPLESEFNEWMEELERKGGRKPSRQEVLEKQEAI 362
            T+KYLN VWG+++SAARWQM M+SDS PLE EF +W++E++R GGR P++Q+VLEK++AI
Sbjct: 340  TYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPTKQDVLEKKQAI 399

Query: 363  QKALTYVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMDIAESRRDMGEVERIRARL 542
            QKA+T+VYSAATVKQMLQEKKSAS+RPLNVAAEKDRLRRE++IA+S+ D  EV+RI+ARL
Sbjct: 400  QKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVDRIKARL 459

Query: 543  LELESSRQSKLKDTKALRLAEMNKKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTR 722
             ELE+SR +K KD KAL+LAEMN+KNR ENFKNASELKPVNTGLKAGEAGYDPFSRRWTR
Sbjct: 460  QELEASRHAKQKDAKALKLAEMNRKNRFENFKNASELKPVNTGLKAGEAGYDPFSRRWTR 519

Query: 723  SRNYYVPNATXXXXXXXXXXXXXXXXXXXXXXXSGSNXXXXXXXXXXXXXXXXXXXXXXD 902
            SRNYY                            +                         D
Sbjct: 520  SRNYYTGEKAAAGNNSVNGIVAGPGTNSTGAPVTAE---AGLVATAAALEAAADAGKLVD 576

Query: 903  TNAPVDLGTESNSLHNFDLLISLTELQKXXXXXXXXXXXXXRKQRIEATVGKRVPENDGR 1082
            T+APVD GTESN LHNF+L ISL  LQK             RKQRIE+TVG RV ENDGR
Sbjct: 577  TSAPVDQGTESNMLHNFELPISLALLQKYGGAQGAQAGFMARKQRIESTVGFRVLENDGR 636

Query: 1083 RHSLTLTVSDYKRRRGLL 1136
            RHSLTL+VSDYKRRRGLL
Sbjct: 637  RHSLTLSVSDYKRRRGLL 654


>ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citrus clementina]
            gi|557524836|gb|ESR36142.1| hypothetical protein
            CICLE_v10028000mg [Citrus clementina]
          Length = 643

 Score =  471 bits (1212), Expect = e-130
 Identities = 241/378 (63%), Positives = 282/378 (74%)
 Frame = +3

Query: 3    IRRSKLSKWFMEPFFEDLIVGCMVRVGIGRKKNMAIYRLCMVKNVDASDPDKQYKMDNKY 182
            IRRSKL+KWFMEPFFE+LIVGC VRVGIGR KN  IYRLCMV+NVDA++PD+ YK++N+ 
Sbjct: 268  IRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNGPIYRLCMVRNVDATEPDRSYKLENRT 327

Query: 183  THKYLNCVWGSDNSAARWQMIMISDSPPLESEFNEWMEELERKGGRKPSRQEVLEKQEAI 362
            T KYLN  WG+++SAARWQM M+SDSPPLE EF +W+ E+ER GGR PS+Q+VLEK+E+I
Sbjct: 328  TCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNGGRMPSKQDVLEKKESI 387

Query: 363  QKALTYVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMDIAESRRDMGEVERIRARL 542
            QK  T+VYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRE+++A+SR D  ++ERI+ RL
Sbjct: 388  QKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDDVDMERIKKRL 447

Query: 543  LELESSRQSKLKDTKALRLAEMNKKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTR 722
             ELE+SR SK+KD KA+RLAEMN+KNR ENFKNASELK VNT LKAGEAGYDPFSRRWTR
Sbjct: 448  QELEASRDSKVKDAKAIRLAEMNRKNRVENFKNASELKRVNTSLKAGEAGYDPFSRRWTR 507

Query: 723  SRNYYVPNATXXXXXXXXXXXXXXXXXXXXXXXSGSNXXXXXXXXXXXXXXXXXXXXXXD 902
            SRNYY+  +                         G+                       D
Sbjct: 508  SRNYYI--SKPGEEVTAEANGDKNGVPGGANGEEGATGEVGMAATEAALEAAAGAGKLVD 565

Query: 903  TNAPVDLGTESNSLHNFDLLISLTELQKXXXXXXXXXXXXXRKQRIEATVGKRVPENDGR 1082
            TNAP+DLGTESN LH+F+L ISL  L+K             RKQRIEATVG +VPENDGR
Sbjct: 566  TNAPLDLGTESNMLHDFELDISLNALKKFGGPQGVLAGFMARKQRIEATVGCQVPENDGR 625

Query: 1083 RHSLTLTVSDYKRRRGLL 1136
            RH+LTLTV DYKRRRGLL
Sbjct: 626  RHALTLTVGDYKRRRGLL 643


>ref|XP_002316628.2| plus-3 domain-containing family protein [Populus trichocarpa]
            gi|550327599|gb|EEE97240.2| plus-3 domain-containing
            family protein [Populus trichocarpa]
          Length = 664

 Score =  471 bits (1211), Expect = e-130
 Identities = 240/381 (62%), Positives = 283/381 (74%), Gaps = 3/381 (0%)
 Frame = +3

Query: 3    IRRSKLSKWFMEPFFEDLIVGCMVRVGIGRKKNMAIYRLCMVKNVDASDPDKQYKMDNKY 182
            IRR+KL+KWFMEP+FE+LI+GC VRVGIGR K   +YRLCMV+NVDA++PDK YK++NK 
Sbjct: 284  IRRTKLAKWFMEPWFEELIIGCFVRVGIGRSKTGPVYRLCMVRNVDAAEPDKPYKLENKS 343

Query: 183  THKYLNCVWGSDNSAARWQMIMISDSPPLESEFNEWMEELERKGGRKPSRQEVLEKQEAI 362
            T+KYLN  WG+D+SAARWQM M+SDS P E E+ +W+ E ER GGR PS+Q++LEK+EAI
Sbjct: 344  TYKYLNVTWGADSSAARWQMAMVSDSAPTEEEYKQWVREAERGGGRLPSKQDILEKKEAI 403

Query: 363  QKALTYVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMDIAESRRDMGEVERIRARL 542
            +K+ T+VYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRE++IA+SR D  EVERI AR+
Sbjct: 404  RKSNTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSRHDEAEVERIEARI 463

Query: 543  LELESSRQSKLKDTKALRLAEMNKKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTR 722
            LELE+SRQ+K+KD KALRLAEMN+KNR ENF+NASELKP+NTGLKAGEAGYDPFSRRWTR
Sbjct: 464  LELEASRQAKVKDAKALRLAEMNRKNRVENFRNASELKPINTGLKAGEAGYDPFSRRWTR 523

Query: 723  SRNYYVPN---ATXXXXXXXXXXXXXXXXXXXXXXXSGSNXXXXXXXXXXXXXXXXXXXX 893
            SRNYYV N                            +G+                     
Sbjct: 524  SRNYYVSNPAGGDDAVAASNSEANDTAAVADSDHVVAGAMSESGVAATAAALDAAADAGK 583

Query: 894  XXDTNAPVDLGTESNSLHNFDLLISLTELQKXXXXXXXXXXXXXRKQRIEATVGKRVPEN 1073
              DT+APVD GTESN++HNF+L ISL  LQK             RKQRIEA VG +V EN
Sbjct: 584  LVDTSAPVDQGTESNTMHNFELEISLIALQKFRGPQGAHAGFMARKQRIEANVGCQVREN 643

Query: 1074 DGRRHSLTLTVSDYKRRRGLL 1136
            DGRRH+LTLTV DYKRRRGLL
Sbjct: 644  DGRRHALTLTVGDYKRRRGLL 664


>ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma cacao]
            gi|590624750|ref|XP_007025692.1| PAF1 complex component
            isoform 1 [Theobroma cacao] gi|508781057|gb|EOY28313.1|
            PAF1 complex component isoform 1 [Theobroma cacao]
            gi|508781058|gb|EOY28314.1| PAF1 complex component
            isoform 1 [Theobroma cacao]
          Length = 660

 Score =  470 bits (1210), Expect = e-130
 Identities = 241/378 (63%), Positives = 284/378 (75%)
 Frame = +3

Query: 3    IRRSKLSKWFMEPFFEDLIVGCMVRVGIGRKKNMAIYRLCMVKNVDASDPDKQYKMDNKY 182
            IRRSKL+KWFMEPFFE+LIVGC VRVGIGR K+  IYRLCMV+NVDA++P++ YK++NK 
Sbjct: 283  IRRSKLAKWFMEPFFEELIVGCYVRVGIGRSKSGPIYRLCMVRNVDATEPERTYKLENKT 342

Query: 183  THKYLNCVWGSDNSAARWQMIMISDSPPLESEFNEWMEELERKGGRKPSRQEVLEKQEAI 362
            T+KYLN VWG+++SAARWQM MISDSPP E EF + + ELER GGR PS+Q+VLEK+EA+
Sbjct: 343  TYKYLNVVWGNESSAARWQMAMISDSPPQEEEFRQLIRELERSGGRMPSKQDVLEKKEAL 402

Query: 363  QKALTYVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMDIAESRRDMGEVERIRARL 542
            QKA T+VYSAATVKQMLQEKKS SSRPLN+AAEKDRLRR+++IA+S+ D  EVERI+ RL
Sbjct: 403  QKAKTFVYSAATVKQMLQEKKSTSSRPLNIAAEKDRLRRDLEIAQSKHDEAEVERIKMRL 462

Query: 543  LELESSRQSKLKDTKALRLAEMNKKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTR 722
             +LE+SRQ++ KD KA+RLAEMN+KNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTR
Sbjct: 463  QQLEASRQAQEKDAKAVRLAEMNRKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTR 522

Query: 723  SRNYYVPNATXXXXXXXXXXXXXXXXXXXXXXXSGSNXXXXXXXXXXXXXXXXXXXXXXD 902
            SRNYYV                           + +                       D
Sbjct: 523  SRNYYVAKPPGADAAAVANGDRIGVIASGNGNDARAAAEAGRAATVAALQEAAGAGKLVD 582

Query: 903  TNAPVDLGTESNSLHNFDLLISLTELQKXXXXXXXXXXXXXRKQRIEATVGKRVPENDGR 1082
            T+APVD GTESN LH+F++ ISL  LQ+             RKQRIEATVG +VPENDGR
Sbjct: 583  TSAPVDEGTESNMLHDFEIPISLNALQRFGGPQGAVAGFMARKQRIEATVGCQVPENDGR 642

Query: 1083 RHSLTLTVSDYKRRRGLL 1136
            RH+LTLTVSDYKRRRGLL
Sbjct: 643  RHALTLTVSDYKRRRGLL 660


>ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
            gi|462413781|gb|EMJ18830.1| hypothetical protein
            PRUPE_ppa002666mg [Prunus persica]
          Length = 646

 Score =  470 bits (1210), Expect = e-130
 Identities = 243/380 (63%), Positives = 280/380 (73%), Gaps = 2/380 (0%)
 Frame = +3

Query: 3    IRRSKLSKWFMEPFFEDLIVGCMVRVGIGRKKNMAIYRLCMVKNVDASDPDKQYKMDNKY 182
            IRRSKL+KW MEPFFE+LIVGC VRVGIGR K+  IYRLCMV+NVDASDPD++YK++NK 
Sbjct: 267  IRRSKLAKWLMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVRNVDASDPDRKYKLENKT 326

Query: 183  THKYLNCVWGSDNSAARWQMIMISDSPPLESEFNEWMEELERKGGRKPSRQEVLEKQEAI 362
            THKYLN VWG++NSAARWQM MISDS PLE EF +W+ E+ER GGR PS+Q+VLEK+EAI
Sbjct: 327  THKYLNVVWGNENSAARWQMAMISDSAPLEEEFKQWVREVERSGGRLPSKQDVLEKKEAI 386

Query: 363  QKALTYVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMDIAESRRDMGEVERIRARL 542
            +K  T+VYSAATVKQM++EKKSASSRPLN+A EKDRLRRE+++A+S+ D  EVERI+ RL
Sbjct: 387  KKINTFVYSAATVKQMIEEKKSASSRPLNIALEKDRLRRELEVAQSKHDDAEVERIKTRL 446

Query: 543  LELESSRQSKLKDTKALRLAEMNKKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTR 722
             +LE+ RQS+ KD+KA+RLAEMN+KNR ENFKNASELKPV TGLKAGEAGYDPFSRRWTR
Sbjct: 447  QQLEARRQSQGKDSKAVRLAEMNRKNRVENFKNASELKPVKTGLKAGEAGYDPFSRRWTR 506

Query: 723  SRNYYV--PNATXXXXXXXXXXXXXXXXXXXXXXXSGSNXXXXXXXXXXXXXXXXXXXXX 896
            SRNYYV  P                                                   
Sbjct: 507  SRNYYVSKPGEQKGEAEAIVDADGALADIESNGTAVVGAVRAGMAATAAALEAAAGAGKL 566

Query: 897  XDTNAPVDLGTESNSLHNFDLLISLTELQKXXXXXXXXXXXXXRKQRIEATVGKRVPEND 1076
             DT+APVD GTESN +HNF+L ISL  LQK             RKQRIEATVG RVPEND
Sbjct: 567  IDTSAPVDFGTESNLMHNFELPISLATLQKFGGPQGAQEGFLARKQRIEATVGCRVPEND 626

Query: 1077 GRRHSLTLTVSDYKRRRGLL 1136
            GRRH+LTLTVSDYKRR GLL
Sbjct: 627  GRRHALTLTVSDYKRRMGLL 646


>ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Citrus sinensis] gi|568867309|ref|XP_006486981.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Citrus sinensis]
          Length = 643

 Score =  468 bits (1204), Expect = e-129
 Identities = 239/378 (63%), Positives = 281/378 (74%)
 Frame = +3

Query: 3    IRRSKLSKWFMEPFFEDLIVGCMVRVGIGRKKNMAIYRLCMVKNVDASDPDKQYKMDNKY 182
            IRRSKL+KWFMEPFFE+LIVGC VRVGIGR KN  IYRLCMV+NVDA++PD+ YK++N+ 
Sbjct: 268  IRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNGPIYRLCMVRNVDATEPDRSYKLENRT 327

Query: 183  THKYLNCVWGSDNSAARWQMIMISDSPPLESEFNEWMEELERKGGRKPSRQEVLEKQEAI 362
            T KYLN  WG+++SAARWQM M+SDSPPLE EF +W+ E+ER  GR PS+Q+VLEK+++I
Sbjct: 328  TCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSGRMPSKQDVLEKKDSI 387

Query: 363  QKALTYVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMDIAESRRDMGEVERIRARL 542
            QK  T+VYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRE+++A+SR D  ++ERI+ RL
Sbjct: 388  QKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDEVDMERIKKRL 447

Query: 543  LELESSRQSKLKDTKALRLAEMNKKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTR 722
             ELE+SR SK+KD KA+RLAEMN+KNR ENFKNASELK VNT LKAGEAGYDPFSRRWTR
Sbjct: 448  QELEASRDSKVKDAKAIRLAEMNRKNRVENFKNASELKRVNTSLKAGEAGYDPFSRRWTR 507

Query: 723  SRNYYVPNATXXXXXXXXXXXXXXXXXXXXXXXSGSNXXXXXXXXXXXXXXXXXXXXXXD 902
            SRNYY+  +                         G+                       D
Sbjct: 508  SRNYYI--SKPGEEVTAEANGDKNGVPGGANGEEGATGEVGMAATEAALEAAAGAGKLVD 565

Query: 903  TNAPVDLGTESNSLHNFDLLISLTELQKXXXXXXXXXXXXXRKQRIEATVGKRVPENDGR 1082
            TNAP+DLGTESN LH+F+L ISL  L+K             RKQRIEATVG +VPENDGR
Sbjct: 566  TNAPLDLGTESNMLHDFELDISLNALKKFGGPQGVLAGFMARKQRIEATVGCQVPENDGR 625

Query: 1083 RHSLTLTVSDYKRRRGLL 1136
            RH+LTLTV DYKRRRGLL
Sbjct: 626  RHALTLTVGDYKRRRGLL 643


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
            gi|223541691|gb|EEF43239.1| RNA polymerase-associated
            protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  468 bits (1204), Expect = e-129
 Identities = 240/380 (63%), Positives = 286/380 (75%), Gaps = 2/380 (0%)
 Frame = +3

Query: 3    IRRSKLSKWFMEPFFEDLIVGCMVRVGIGRKKNMAIYRLCMVKNVDASDPDKQYKMDNKY 182
            IRRSKL+KWFMEP+FE+LIVGC VRVGIGR K+  IYRLC+V+NVDA+DPD+ YK++NK 
Sbjct: 281  IRRSKLAKWFMEPWFEELIVGCFVRVGIGRSKSGPIYRLCLVRNVDAADPDRPYKLENKT 340

Query: 183  THKYLNCVWGSDNSAARWQMIMISDSPPLESEFNEWMEELERKGGRKPSRQEVLEKQEAI 362
            T+KYLN +WG+++SAARWQM MISDS P E E+ +W+ E+ER GGR P++Q++LEK+EAI
Sbjct: 341  TYKYLNVIWGNESSAARWQMAMISDSAPTEDEYKQWVREVERSGGRMPTKQDILEKKEAI 400

Query: 363  QKALTYVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMDIAESRRDMGEVERIRARL 542
            +K+ T+VYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRE+++A+S++D  EVERIRAR+
Sbjct: 401  RKSNTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSKQDDAEVERIRARI 460

Query: 543  LELESSRQSKLKDTKALRLAEMNKKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTR 722
             ELE+SRQ++ KD KA+RLAEMN+KNRAENF+NASELKPVNT LKAGEAGYDPFSRRWTR
Sbjct: 461  QELEASRQTQGKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTR 520

Query: 723  SRNYYV--PNATXXXXXXXXXXXXXXXXXXXXXXXSGSNXXXXXXXXXXXXXXXXXXXXX 896
            SRNYYV  P                          +G +                     
Sbjct: 521  SRNYYVSKPAGGDAAAATNNEASGTVAVANKTESAAGVSAEAGMAATAAALEAAADAGKL 580

Query: 897  XDTNAPVDLGTESNSLHNFDLLISLTELQKXXXXXXXXXXXXXRKQRIEATVGKRVPEND 1076
             DT APVD GTESN+LHNF+L ISLT LQK             RKQRIEAT+G RV END
Sbjct: 581  VDTAAPVDQGTESNTLHNFELPISLTALQKFGGAQGAQAGFMARKQRIEATIGCRVSEND 640

Query: 1077 GRRHSLTLTVSDYKRRRGLL 1136
             +RH LTLTVSDYKRRRGLL
Sbjct: 641  EKRHVLTLTVSDYKRRRGLL 660


>ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Cicer arietinum] gi|502142571|ref|XP_004505023.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Cicer arietinum]
          Length = 658

 Score =  467 bits (1201), Expect = e-129
 Identities = 240/378 (63%), Positives = 278/378 (73%)
 Frame = +3

Query: 3    IRRSKLSKWFMEPFFEDLIVGCMVRVGIGRKKNMAIYRLCMVKNVDASDPDKQYKMDNKY 182
            IRRSKL+KWFMEPFFE+LIVGC VRVGIGR K   IYRLCMVKNVD+SDPD+QYK++N+ 
Sbjct: 281  IRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDSSDPDRQYKLENRT 340

Query: 183  THKYLNCVWGSDNSAARWQMIMISDSPPLESEFNEWMEELERKGGRKPSRQEVLEKQEAI 362
            THKYLN VWG+++SAARWQM M+SDS PLE EF +W++E+ER GGR P++Q+VLEK++AI
Sbjct: 341  THKYLNVVWGNESSAARWQMAMVSDSFPLEEEFKQWVKEVERSGGRMPTKQDVLEKKQAI 400

Query: 363  QKALTYVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMDIAESRRDMGEVERIRARL 542
            QK +T+VYSA TVKQMLQEKKS+SSRPLNVAAEKDRLRREM+IA+S+ D  EVERI+ R+
Sbjct: 401  QKIITFVYSADTVKQMLQEKKSSSSRPLNVAAEKDRLRREMEIAQSKNDEAEVERIKTRV 460

Query: 543  LELESSRQSKLKDTKALRLAEMNKKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTR 722
             ELE+SR +K+KD KAL+LAEMN+KNR ENFKNASEL+PVN GLKAGEAGYDPFSRRWTR
Sbjct: 461  QELEASRHAKVKDAKALKLAEMNRKNRFENFKNASELRPVNIGLKAGEAGYDPFSRRWTR 520

Query: 723  SRNYYVPNATXXXXXXXXXXXXXXXXXXXXXXXSGSNXXXXXXXXXXXXXXXXXXXXXXD 902
            SRNYYV                                                     D
Sbjct: 521  SRNYYVAKPGEKAAARKNTTNVLVADAGSNITGVPVTAESGVVATAAALEAAADAGKLVD 580

Query: 903  TNAPVDLGTESNSLHNFDLLISLTELQKXXXXXXXXXXXXXRKQRIEATVGKRVPENDGR 1082
            T+APVD GTESN LHNF+L ISL  L K             RKQR+EATVG RV ENDGR
Sbjct: 581  TSAPVDQGTESNFLHNFELPISLALLHKYGGAQGAQAGFMARKQRMEATVGFRVSENDGR 640

Query: 1083 RHSLTLTVSDYKRRRGLL 1136
            RH LTL+V DYKRRRGLL
Sbjct: 641  RHVLTLSVGDYKRRRGLL 658


>gb|EXB82802.1| RNA polymerase-associated protein RTF1-like protein [Morus notabilis]
          Length = 658

 Score =  463 bits (1192), Expect = e-128
 Identities = 237/380 (62%), Positives = 278/380 (73%), Gaps = 2/380 (0%)
 Frame = +3

Query: 3    IRRSKLSKWFMEPFFEDLIVGCMVRVGIGRKKNMAIYRLCMVKNVDASDPDKQYKMDNKY 182
            +RRSKL+KW MEPFFE+LIVGC VRVGIGR K+  IYRLCMV+NVDAS+PD+QYK+DNK 
Sbjct: 279  VRRSKLAKWLMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVRNVDASEPDRQYKLDNKI 338

Query: 183  THKYLNCVWGSDNSAARWQMIMISDSPPLESEFNEWMEELERKGGRKPSRQEVLEKQEAI 362
            THKYLN VWG++NSAARWQM M+SDS P E EF +W+ E+ER GGR P++ ++L+K+E+I
Sbjct: 339  THKYLNVVWGNENSAARWQMAMVSDSVPNEEEFKQWVREVERSGGRMPTKHDILDKKESI 398

Query: 363  QKALTYVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMDIAESRRDMGEVERIRARL 542
            +K  T+VYSAATVKQMLQEKKSAS+RPLN+A EKDRLRRE+++A+S+ D  EV+RI+ RL
Sbjct: 399  KKINTFVYSAATVKQMLQEKKSASARPLNIALEKDRLRRELEVAQSKNDEVEVDRIKTRL 458

Query: 543  LELESSRQSKLKDTKALRLAEMNKKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTR 722
             ELE+SR++K  D KA+RLAEMN+KNR ENFKNASELKPVNTGLKAGEAGYDPFSRRWTR
Sbjct: 459  QELEASRKAKQTDAKAIRLAEMNRKNRVENFKNASELKPVNTGLKAGEAGYDPFSRRWTR 518

Query: 723  SRNYYV--PNATXXXXXXXXXXXXXXXXXXXXXXXSGSNXXXXXXXXXXXXXXXXXXXXX 896
            SRNYYV  P                                                   
Sbjct: 519  SRNYYVGKPGEVKEDSGANAGNNGASTDAENNGRHGIVAAEAGIAATEAALEAAADAGKL 578

Query: 897  XDTNAPVDLGTESNSLHNFDLLISLTELQKXXXXXXXXXXXXXRKQRIEATVGKRVPEND 1076
             DTNAPVD GT SN LHNF+L ISL+ LQK             RKQRIEATVG RVPEND
Sbjct: 579  VDTNAPVDQGTVSNMLHNFELPISLSVLQKFGGPQGAQAGFMARKQRIEATVGCRVPEND 638

Query: 1077 GRRHSLTLTVSDYKRRRGLL 1136
            GRRH+LTL+V DYKRRRGLL
Sbjct: 639  GRRHALTLSVGDYKRRRGLL 658


>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
            sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
            polymerase-associated protein RTF1 homolog [Cucumis
            sativus]
          Length = 660

 Score =  463 bits (1191), Expect = e-128
 Identities = 237/380 (62%), Positives = 282/380 (74%), Gaps = 2/380 (0%)
 Frame = +3

Query: 3    IRRSKLSKWFMEPFFEDLIVGCMVRVGIGRKKNMAIYRLCMVKNVDASDPDKQYKMDNKY 182
            IRRSKL+KW MEPFFE+LIVGC VRVGIGR ++  IYRLC+V+NVDA++PD+QYK++NK 
Sbjct: 282  IRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKI 341

Query: 183  THKYLNCVWGSDNSAARWQMIMISDSPPLESEFNEWMEELERKGGRKPSRQEVLEKQEAI 362
            THKYLN +WG++ SAARWQM M+SDS PLE E+ +W++E+ER GGR  S+Q++LEK+EAI
Sbjct: 342  THKYLNVIWGNEASAARWQMAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAI 401

Query: 363  QKALTYVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMDIAESRRDMGEVERIRARL 542
            QK   +VYSAATVKQMLQ+KKSAS+RPLN+AAEKDRLRREMD+A S+ D  EVERI+ RL
Sbjct: 402  QKVNNFVYSAATVKQMLQDKKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRL 461

Query: 543  LELESSRQSKLKDTKALRLAEMNKKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTR 722
             +LE+SR+ ++KD KA+RLAEMN+KNR ENFKNASEL+P+   LKAGEAGYDPFSRRWTR
Sbjct: 462  QQLEASRRLQMKDAKAIRLAEMNRKNRVENFKNASELRPLK-DLKAGEAGYDPFSRRWTR 520

Query: 723  SRNYYVPNA--TXXXXXXXXXXXXXXXXXXXXXXXSGSNXXXXXXXXXXXXXXXXXXXXX 896
            SRNYYV NA                          +G                       
Sbjct: 521  SRNYYVSNAGEANGAAEAAGNSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKL 580

Query: 897  XDTNAPVDLGTESNSLHNFDLLISLTELQKXXXXXXXXXXXXXRKQRIEATVGKRVPEND 1076
             DTNAPVD GTESNSLHNF+L ISL  LQK             RKQRIEATVG++VPEND
Sbjct: 581  VDTNAPVDGGTESNSLHNFELPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPEND 640

Query: 1077 GRRHSLTLTVSDYKRRRGLL 1136
            GRRH+LTLTVSDYKRRRGLL
Sbjct: 641  GRRHALTLTVSDYKRRRGLL 660


>ref|XP_002305685.1| plus-3 domain-containing family protein [Populus trichocarpa]
            gi|222848649|gb|EEE86196.1| plus-3 domain-containing
            family protein [Populus trichocarpa]
          Length = 662

 Score =  462 bits (1190), Expect = e-127
 Identities = 236/381 (61%), Positives = 282/381 (74%), Gaps = 3/381 (0%)
 Frame = +3

Query: 3    IRRSKLSKWFMEPFFEDLIVGCMVRVGIGRKKNMAIYRLCMVKNVDASDPDKQYKMDNKY 182
            IRR+KL+KWFMEP+FE+LI+GC VRVGIGR K+  +YRLCMV+NVDA++PDK YK++NK 
Sbjct: 282  IRRTKLAKWFMEPWFEELIIGCFVRVGIGRSKSGPVYRLCMVRNVDAAEPDKPYKLENKS 341

Query: 183  THKYLNCVWGSDNSAARWQMIMISDSPPLESEFNEWMEELERKGGRKPSRQEVLEKQEAI 362
            T+KYLN  WG+D SAARWQM M+SDS P E E+ +W+ E+E  GGR PS+Q++LEK+EAI
Sbjct: 342  TYKYLNVTWGADTSAARWQMAMVSDSGPTEEEYKQWVREVECGGGRLPSKQDILEKKEAI 401

Query: 363  QKALTYVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMDIAESRRDMGEVERIRARL 542
            +K+ T+VYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRE++IA+S+ D  EVERI AR+
Sbjct: 402  RKSNTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSKHDEAEVERINARI 461

Query: 543  LELESSRQSKLKDTKALRLAEMNKKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTR 722
             ELE+SR +K+KD KA+RLAEMN+KNR ENF+NASE+KPVNTGLKAGEAGYDPFSRRWTR
Sbjct: 462  EELEASRHAKVKDAKAIRLAEMNRKNRVENFRNASEMKPVNTGLKAGEAGYDPFSRRWTR 521

Query: 723  SRNYYV---PNATXXXXXXXXXXXXXXXXXXXXXXXSGSNXXXXXXXXXXXXXXXXXXXX 893
            SRNYYV     A                        +G                      
Sbjct: 522  SRNYYVSKPAEADDPVATKISEANETVAVAASNQVVAGVMSEAGVAATEAALEAAADAGK 581

Query: 894  XXDTNAPVDLGTESNSLHNFDLLISLTELQKXXXXXXXXXXXXXRKQRIEATVGKRVPEN 1073
              DT+APVD GTESN++H+F+L ISL  LQ+             RKQRIEATVG RVPEN
Sbjct: 582  LVDTSAPVDQGTESNTMHSFELEISLIALQEFGGPQGAQAGFMARKQRIEATVGCRVPEN 641

Query: 1074 DGRRHSLTLTVSDYKRRRGLL 1136
            DGRRH+LTLTV DYKRRRGLL
Sbjct: 642  DGRRHALTLTVGDYKRRRGLL 662


>ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform 1
            [Solanum lycopersicum] gi|460374083|ref|XP_004232841.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform 2 [Solanum lycopersicum]
          Length = 645

 Score =  457 bits (1177), Expect = e-126
 Identities = 237/378 (62%), Positives = 279/378 (73%)
 Frame = +3

Query: 3    IRRSKLSKWFMEPFFEDLIVGCMVRVGIGRKKNMAIYRLCMVKNVDASDPDKQYKMDNKY 182
            IRRSKL+KWFMEPFF++LIVGC VRVGIGR ++  IYRLC+V+NVDASDP++QYK++NK 
Sbjct: 274  IRRSKLAKWFMEPFFDELIVGCFVRVGIGRSRSGPIYRLCVVRNVDASDPNRQYKLENKT 333

Query: 183  THKYLNCVWGSDNSAARWQMIMISDSPPLESEFNEWMEELERKGGRKPSRQEVLEKQEAI 362
            T K+LN VWG++NSAARWQM MISDSPPL  EF++W+ E+ER GGR PS+Q+VLEK+EAI
Sbjct: 334  TSKFLNVVWGNENSAARWQMAMISDSPPLRDEFDQWVREVERSGGRMPSKQDVLEKKEAI 393

Query: 363  QKALTYVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMDIAESRRDMGEVERIRARL 542
            QK+ T+VYSA TVKQMLQ+KKSA+ RPLNVAAEKDRLRR+M++A+ + D  EVERI+ARL
Sbjct: 394  QKSNTFVYSADTVKQMLQQKKSATWRPLNVAAEKDRLRRDMEVAKMKNDEAEVERIKARL 453

Query: 543  LELESSRQSKLKDTKALRLAEMNKKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTR 722
             ELE SR+ + KD KA RLAEMN+KNR ENFKNASEL+PVN  LKAGEAGYDPFSRRWTR
Sbjct: 454  QELEDSRKVQEKDDKARRLAEMNRKNRVENFKNASELRPVNQLLKAGEAGYDPFSRRWTR 513

Query: 723  SRNYYVPNATXXXXXXXXXXXXXXXXXXXXXXXSGSNXXXXXXXXXXXXXXXXXXXXXXD 902
            S NY+   A+                       +G                        D
Sbjct: 514  STNYFAKGAS------NGEAAAAAALAAEDNNGAGGTADGGMAATAAALQAAAGAGKLVD 567

Query: 903  TNAPVDLGTESNSLHNFDLLISLTELQKXXXXXXXXXXXXXRKQRIEATVGKRVPENDGR 1082
            TNAPVD GTESN+LH+FDL ISL  LQK             RKQRIEATVG  VPENDGR
Sbjct: 568  TNAPVDQGTESNTLHDFDLPISLAVLQKFGGSQGGQAGFMARKQRIEATVGCSVPENDGR 627

Query: 1083 RHSLTLTVSDYKRRRGLL 1136
            RH+LTL+VSDYKRRRGLL
Sbjct: 628  RHALTLSVSDYKRRRGLL 645


>ref|XP_004493842.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Cicer arietinum] gi|502110282|ref|XP_004493843.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Cicer arietinum]
          Length = 653

 Score =  456 bits (1174), Expect = e-126
 Identities = 235/378 (62%), Positives = 273/378 (72%)
 Frame = +3

Query: 3    IRRSKLSKWFMEPFFEDLIVGCMVRVGIGRKKNMAIYRLCMVKNVDASDPDKQYKMDNKY 182
            IRRSKL+KWFMEPFFE+LIVGC VRVGIGR K   IYRLCMVKNVDASDPD+QYK+DNK 
Sbjct: 276  IRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDASDPDRQYKLDNKT 335

Query: 183  THKYLNCVWGSDNSAARWQMIMISDSPPLESEFNEWMEELERKGGRKPSRQEVLEKQEAI 362
            T+KYLN VWG++ SAARWQM M+SDSPPLE EF +W++E+ER GGR   + +V+EK +AI
Sbjct: 336  TYKYLNVVWGNETSAARWQMAMVSDSPPLEEEFKQWVKEVERSGGRMLMKLDVMEKNQAI 395

Query: 363  QKALTYVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMDIAESRRDMGEVERIRARL 542
            QK  ++VYSAATVKQM++EKKS S RPLNVAAEKDRL+R+++IAES++D  EVE+I+ RL
Sbjct: 396  QKINSFVYSAATVKQMIEEKKSNSRRPLNVAAEKDRLKRQLEIAESKKDAAEVEKIKTRL 455

Query: 543  LELESSRQSKLKDTKALRLAEMNKKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTR 722
             ELE+SR+++ KD KALRL+EMN+KNR ENFKNASELKPVN GLKAGEAGYDPFSRRWTR
Sbjct: 456  QELEASRKTQAKDAKALRLSEMNRKNRFENFKNASELKPVNKGLKAGEAGYDPFSRRWTR 515

Query: 723  SRNYYVPNATXXXXXXXXXXXXXXXXXXXXXXXSGSNXXXXXXXXXXXXXXXXXXXXXXD 902
            SRNYY                            +                         D
Sbjct: 516  SRNYYNAKQAEEAAAGNNSSGGAVGDRGSNGVGATVAGEAGVVATAEALEAAADAGKLVD 575

Query: 903  TNAPVDLGTESNSLHNFDLLISLTELQKXXXXXXXXXXXXXRKQRIEATVGKRVPENDGR 1082
            T APVD GTESN LHNF+L ISLT LQK             +KQRIE  VG RVPENDG+
Sbjct: 576  TRAPVDQGTESNFLHNFELPISLTILQKFGGAQGVHAGFIAKKQRIEEIVGFRVPENDGK 635

Query: 1083 RHSLTLTVSDYKRRRGLL 1136
             H LTLTVSDYKRRRGLL
Sbjct: 636  SHMLTLTVSDYKRRRGLL 653


>ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Solanum
            tuberosum]
          Length = 652

 Score =  452 bits (1162), Expect = e-124
 Identities = 233/379 (61%), Positives = 277/379 (73%), Gaps = 1/379 (0%)
 Frame = +3

Query: 3    IRRSKLSKWFMEPFFEDLIVGCMVRVGIGRKKNMAIYRLCMVKNVDASDPDKQYKMDNKY 182
            IRRSKL+KWFMEPFF++LIVGC VRVGIGR ++  IYRLC+V+NVD+SDP++QYK++NK 
Sbjct: 274  IRRSKLAKWFMEPFFDELIVGCFVRVGIGRSRSGPIYRLCVVRNVDSSDPNRQYKLENKT 333

Query: 183  THKYLNCVWGSDNSAARWQMIMISDSPPLESEFNEWMEELERKGGRKPSRQEVLEKQEAI 362
            T K+LN VWG++NSAARWQM M+SDSPPL  EF++W+ E+ER GGR PS+Q+VLEK+EAI
Sbjct: 334  TSKFLNVVWGNENSAARWQMAMVSDSPPLRDEFDQWVREVERSGGRMPSKQDVLEKKEAI 393

Query: 363  QKALTYVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMDIAESRRDMGEVERIRARL 542
            QK+ T+VYSA TVKQMLQ+KKSA+ RPLNVAAEKDRLRR+M++A+ + D  EVERI+ARL
Sbjct: 394  QKSNTFVYSADTVKQMLQQKKSATWRPLNVAAEKDRLRRDMEVAKMKNDEAEVERIKARL 453

Query: 543  LELESSRQSKLKDTKALRLAEMNKKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTR 722
             EL+ SR+ + KD KA RLAEMN+KNR ENFKNASEL+PVN  LKAG+AGYDPFSRRWTR
Sbjct: 454  QELDDSRKVQEKDDKARRLAEMNRKNRVENFKNASELRPVNQLLKAGQAGYDPFSRRWTR 513

Query: 723  SRNYYVPNATXXXXXXXXXXXXXXXXXXXXXXXSGS-NXXXXXXXXXXXXXXXXXXXXXX 899
            S NY+   A                          S                        
Sbjct: 514  STNYFAKGANEEAEGASNGEVAAAAALAAEDNNGASGTADGGMAATAAALQAAAGAGKLV 573

Query: 900  DTNAPVDLGTESNSLHNFDLLISLTELQKXXXXXXXXXXXXXRKQRIEATVGKRVPENDG 1079
            DTNAPVD GTESN+LH+FDL ISL  LQK             RKQRIEATVG  VPENDG
Sbjct: 574  DTNAPVDQGTESNTLHDFDLPISLAVLQKFGGSQGGQAGFMARKQRIEATVGCSVPENDG 633

Query: 1080 RRHSLTLTVSDYKRRRGLL 1136
            RRH+LTL+VSDYKRRRGLL
Sbjct: 634  RRHALTLSVSDYKRRRGLL 652


>ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [Amborella trichopoda]
            gi|548857220|gb|ERN15034.1| hypothetical protein
            AMTR_s00032p00242160 [Amborella trichopoda]
          Length = 624

 Score =  449 bits (1155), Expect = e-123
 Identities = 237/381 (62%), Positives = 278/381 (72%), Gaps = 3/381 (0%)
 Frame = +3

Query: 3    IRRSKLSKWFMEPFFEDLIVGCMVRVGIGRKKN-MAIYRLCMVKNVDASDPDKQYKMDNK 179
            IRRS+L+KWF+EPFFE+ IVGC VRVGIG  ++  +IYRLCMV+NVDASDPD+QYK +N+
Sbjct: 264  IRRSRLAKWFLEPFFEEAIVGCFVRVGIGTSRSGQSIYRLCMVRNVDASDPDRQYKFENR 323

Query: 180  YTHKYLNCVWGSDNSAARWQMIMISDSPPLESEFNEWMEELERKGGRKPSRQEVLEKQEA 359
             THKYLNCVWGS+ SAARWQM  ISDS PLE EF EW+ E+ER GGR P++Q+V++K EA
Sbjct: 324  TTHKYLNCVWGSEASAARWQMARISDSAPLEKEFLEWVREVERGGGRMPTKQDVIDKGEA 383

Query: 360  IQK-ALTYVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMDIAESRRDMGEVERIRA 536
            IQ+ + ++VYSAATVKQMLQEKKSAS+RP N+AAEKDRLR+EM++AESR D  E ER+RA
Sbjct: 384  IQRLSSSFVYSAATVKQMLQEKKSASTRPSNIAAEKDRLRKEMELAESRLDHAEAERVRA 443

Query: 537  RLLELES-SRQSKLKDTKALRLAEMNKKNRAENFKNASELKPVNTGLKAGEAGYDPFSRR 713
            RL ELE+ S+QSK KD KA+ LAEMN++NRAENFKNASELKPVNT LKAGEAGYDPFSRR
Sbjct: 444  RLQELENLSQQSKKKDAKAVMLAEMNRRNRAENFKNASELKPVNTSLKAGEAGYDPFSRR 503

Query: 714  WTRSRNYYVPNATXXXXXXXXXXXXXXXXXXXXXXXSGSNXXXXXXXXXXXXXXXXXXXX 893
            WTRSRNYYV                                                   
Sbjct: 504  WTRSRNYYVSKPEGGGEVVKEEAETAATKAALEAAADAGK-------------------- 543

Query: 894  XXDTNAPVDLGTESNSLHNFDLLISLTELQKXXXXXXXXXXXXXRKQRIEATVGKRVPEN 1073
              DT APVD GTES+SLH+F+L ISL  LQ+             RKQRIEAT+G RVPEN
Sbjct: 544  LVDTKAPVDEGTESHSLHDFELPISLAGLQRFGGPQGAQLAFMARKQRIEATIGVRVPEN 603

Query: 1074 DGRRHSLTLTVSDYKRRRGLL 1136
            DGRRHSLTL+VSDYKRRRGL+
Sbjct: 604  DGRRHSLTLSVSDYKRRRGLV 624


>ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
            vesca subsp. vesca]
          Length = 657

 Score =  449 bits (1155), Expect = e-123
 Identities = 234/381 (61%), Positives = 278/381 (72%), Gaps = 3/381 (0%)
 Frame = +3

Query: 3    IRRSKLSKWFMEPFFEDLIVGCMVRVGIGRKKN-MAIYRLCMVKNVDASDPDKQYKMDNK 179
            IRRS+L+KW MEPFFE+LIVGC VRVGIG+ K+   IYRLC V NVD+SDPD+QYK++NK
Sbjct: 277  IRRSRLAKWLMEPFFEELIVGCCVRVGIGKTKSGRPIYRLCSVCNVDSSDPDRQYKLENK 336

Query: 180  YTHKYLNCVWGSDNSAARWQMIMISDSPPLESEFNEWMEELERKGGRKPSRQEVLEKQEA 359
             THKYLN VWG++NSAARWQM M+SDS PLE E+++W+ E+E+ GGR PS+++VLEK+EA
Sbjct: 337  TTHKYLNVVWGNENSAARWQMAMVSDSLPLEEEYDQWVREVEKNGGRLPSKEDVLEKKEA 396

Query: 360  IQKALTYVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMDIAESRRDMGEVERIRAR 539
            I+K  T+VYSA TVKQM+QEKKSASSRPLN+A EKDRLRRE++IA+S+ D  EVERI+AR
Sbjct: 397  IKKTNTFVYSAKTVKQMIQEKKSASSRPLNIALEKDRLRRELEIAQSKHDDAEVERIKAR 456

Query: 540  LLELESSRQSKLKDTKALRLAEMNKKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWT 719
            L +LE+ +QS+ KD+KA+RLAEMN+KNR +NFKNAS LKPV TGLKAGEAGYDPFSRRWT
Sbjct: 457  LEQLEARQQSQGKDSKAVRLAEMNRKNRVDNFKNASGLKPVKTGLKAGEAGYDPFSRRWT 516

Query: 720  RSRNYYVPNATXXXXXXXXXXXXXXXXXXXXXXXSGS--NXXXXXXXXXXXXXXXXXXXX 893
            RSRNYYV                           +G                        
Sbjct: 517  RSRNYYVSKPDEQKDDAEANAVAAESLAEVETNGTGGVVAVRAGLEATAAALEAAAGAGK 576

Query: 894  XXDTNAPVDLGTESNSLHNFDLLISLTELQKXXXXXXXXXXXXXRKQRIEATVGKRVPEN 1073
              DT APVD GT SN LHNF+L ISL  LQK             RKQRIEATVG RVPE+
Sbjct: 577  LIDTMAPVDQGTSSNPLHNFELPISLATLQKFGGPQGAQEGFMARKQRIEATVGVRVPED 636

Query: 1074 DGRRHSLTLTVSDYKRRRGLL 1136
            DGRRH+LTL+VSDYKRRRGLL
Sbjct: 637  DGRRHALTLSVSDYKRRRGLL 657


>ref|XP_003625428.1| RNA polymerase-associated protein RTF1-like protein [Medicago
            truncatula] gi|355500443|gb|AES81646.1| RNA
            polymerase-associated protein RTF1-like protein [Medicago
            truncatula]
          Length = 624

 Score =  443 bits (1140), Expect = e-122
 Identities = 232/378 (61%), Positives = 267/378 (70%)
 Frame = +3

Query: 3    IRRSKLSKWFMEPFFEDLIVGCMVRVGIGRKKNMAIYRLCMVKNVDASDPDKQYKMDNKY 182
            I RSKL+KWFMEPFFE+LIVGC VRVGIGR K   IYRLCMVKNVDASDPD+ YK+DNK 
Sbjct: 253  IPRSKLTKWFMEPFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDASDPDRLYKLDNKT 312

Query: 183  THKYLNCVWGSDNSAARWQMIMISDSPPLESEFNEWMEELERKGGRKPSRQEVLEKQEAI 362
            T+KYLN VWG++ SAARWQM M+SDSPPLE EF +W++E+ER GGR   R +V+EK++A+
Sbjct: 313  TYKYLNVVWGNETSAARWQMAMVSDSPPLEEEFKQWVKEVERSGGRMLKRLDVVEKKQAM 372

Query: 363  QKALTYVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMDIAESRRDMGEVERIRARL 542
             K   +VYSAATVKQML+EKKS S RPLNVAAEKDRL+RE++IAES+ D   VE+I+ +L
Sbjct: 373  LKINNFVYSAATVKQMLEEKKSISRRPLNVAAEKDRLKRELEIAESKNDAAGVEKIQTKL 432

Query: 543  LELESSRQSKLKDTKALRLAEMNKKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTR 722
             ELE SR+S+ KD KALRL+EMN+KNR ENFKNAS+LKPVN  LKAGEAGYDPFSRRWTR
Sbjct: 433  QELEESRKSREKDAKALRLSEMNRKNRVENFKNASDLKPVNKALKAGEAGYDPFSRRWTR 492

Query: 723  SRNYYVPNATXXXXXXXXXXXXXXXXXXXXXXXSGSNXXXXXXXXXXXXXXXXXXXXXXD 902
            SRNYY                            +G                        D
Sbjct: 493  SRNYYNSKPAEEATAGNNTSGGAVGDGGSNGIGAG------MAATTEALEAAAGAGKLVD 546

Query: 903  TNAPVDLGTESNSLHNFDLLISLTELQKXXXXXXXXXXXXXRKQRIEATVGKRVPENDGR 1082
            T APVD GTESN LH+F+L ISL  LQK             +KQRIE  VG RVPENDGR
Sbjct: 547  TRAPVDEGTESNVLHDFELPISLAMLQKFGGAKGVQAGFMAKKQRIEEVVGFRVPENDGR 606

Query: 1083 RHSLTLTVSDYKRRRGLL 1136
            RH LTLTVSDYKRRRGLL
Sbjct: 607  RHQLTLTVSDYKRRRGLL 624


>ref|XP_003554309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 646

 Score =  438 bits (1127), Expect = e-120
 Identities = 227/378 (60%), Positives = 267/378 (70%)
 Frame = +3

Query: 3    IRRSKLSKWFMEPFFEDLIVGCMVRVGIGRKKNMAIYRLCMVKNVDASDPDKQYKMDNKY 182
            IRRSKL+KWFMEPFFE+LI GC VRVGIGR  +  IY LCMVKNVDA+D D+QYK+++K 
Sbjct: 269  IRRSKLAKWFMEPFFEELIAGCFVRVGIGRSMSGPIYGLCMVKNVDATDCDQQYKLEDKT 328

Query: 183  THKYLNCVWGSDNSAARWQMIMISDSPPLESEFNEWMEELERKGGRKPSRQEVLEKQEAI 362
            THKYLN VWG++ SA RWQM M+SDSPP E EF +W++++ER+GGR P++QEV EK+EAI
Sbjct: 329  THKYLNVVWGNETSATRWQMAMVSDSPPEEEEFIQWVKDVERRGGRMPTKQEVAEKKEAI 388

Query: 363  QKALTYVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRREMDIAESRRDMGEVERIRARL 542
            QK   +VYSAATVKQMLQEKKSA +RPLN+AAEKDRLR E++IA S+ +  EV+RI  RL
Sbjct: 389  QKTNLFVYSAATVKQMLQEKKSAKTRPLNIAAEKDRLRTELEIAHSKNNKAEVKRIMTRL 448

Query: 543  LELESSRQSKLKDTKALRLAEMNKKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTR 722
            LELE SRQ+K  D +AL+LAEMN+KNR ENFKNASELKPVN  LKAGEAGYDPFSRRWTR
Sbjct: 449  LELEESRQAKTMDARALKLAEMNRKNRFENFKNASELKPVNKELKAGEAGYDPFSRRWTR 508

Query: 723  SRNYYVPNATXXXXXXXXXXXXXXXXXXXXXXXSGSNXXXXXXXXXXXXXXXXXXXXXXD 902
            S NYY                            +                         D
Sbjct: 509  SMNYYAGKPAEEAAGEINSASGAVADTGSYHTGASETVTAGMAATTAALKAAAGAGKLVD 568

Query: 903  TNAPVDLGTESNSLHNFDLLISLTELQKXXXXXXXXXXXXXRKQRIEATVGKRVPENDGR 1082
            T+APVD GTESNSLHNF L ISL  LQK             +KQRIEATVG +V +ND +
Sbjct: 569  TSAPVDQGTESNSLHNFQLPISLAILQKFGGAKGVQAGFMAKKQRIEATVGFQVLKNDRQ 628

Query: 1083 RHSLTLTVSDYKRRRGLL 1136
            +H+LTLTVSDYKRRRGLL
Sbjct: 629  KHALTLTVSDYKRRRGLL 646