BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver25_contig00001634
         (888 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   189   3e-52
gb|AAR13295.1| retrovirus-related pol polyprotein [Phaseolus vul...   203   8e-50
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              162   3e-44
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              161   7e-44
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              161   7e-44
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   158   1e-43
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              160   1e-43
emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]   170   4e-43
emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera]   165   9e-43
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  156   3e-42
emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]   162   1e-41
gb|AFB73912.1| polyprotein [Citrus sinensis]                          152   2e-41
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   151   7e-41
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     151   7e-41
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     151   7e-41
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   173   7e-41
gb|AFB73911.1| polyprotein [Citrus sinensis]                          145   2e-40
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   151   3e-40
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        148   4e-40
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   148   7e-40

>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  189 bits (480), Expect(2) = 3e-52
 Identities = 95/224 (42%), Positives = 141/224 (62%), Gaps = 1/224 (0%)
 Frame = -2

Query: 767 DEKINDEEQALCLINSLPEKYEPVIKALMHGNDKMTYAEVTIALRSEEFRKMDREDLSSE 588
           D K  DE+ AL L++SLP+++E +   L+HG + ++   V  AL S E RK D+    S 
Sbjct: 77  DVKFEDEDLALMLLSSLPDEFEHLETTLLHGKENVSLDVVCSALYSHELRKQDKMKTKST 136

Query: 587 ANNDLLLARGRSTDRRKKTGDRGKVKGRSKSRARLQKDECAWCHDFGHWAKDCTKRKDRE 408
            + + L+ARGR   + K+     K KGR+     + KDECA+CH+ GHW KDC K + +E
Sbjct: 137 TSEEALVARGRQQSQTKERRGMSKSKGRA-----VAKDECAFCHEKGHWKKDCPKLQKKE 191

Query: 407 RDNNEVNIAKASEDLVEASDFSLTVIPSTFIVTDGTWVLDSGATYHICPHRDWFSDFEEF 228
           +   + N+A+   D+   SD SL V  S  +  D  W+LDSG TYH+CP RDWF +F+E 
Sbjct: 192 KVLQDANVAECKSDV--ESDISLIVSLSASLYLD-EWILDSGCTYHMCPIRDWFFEFQEL 248

Query: 227 D-GEVRMGNNHTCRVIGIGSIRIKMHDGMVRELKEVRFVPSIRR 99
           D G V MGN++ C+ +GIGSI+++ HDG  R L++VR+VP +++
Sbjct: 249 DGGVVYMGNDNPCKTVGIGSIKLRNHDGSTRILRDVRYVPKLKK 292



 Score = 43.5 bits (101), Expect(2) = 3e-52
 Identities = 20/35 (57%), Positives = 27/35 (77%)
 Frame = -1

Query: 105 KKNLISLGTLEAKGYKLVAENGVLKVISGSLVIMK 1
           KKNLISLG LE+KG  +   +G+LK  SG+LV++K
Sbjct: 291 KKNLISLGALESKGLVVTMRDGILKATSGALVMLK 325


>gb|AAR13295.1| retrovirus-related pol polyprotein [Phaseolus vulgaris]
          Length = 324

 Score =  203 bits (516), Expect = 8e-50
 Identities = 103/254 (40%), Positives = 156/254 (61%), Gaps = 1/254 (0%)
 Frame = -2

Query: 878 NRIYLKRNLYRYYMKRGATLTEHLDSYNKLLSELVNYDEKINDEEQALCLINSLPEKYEP 699
           N++ +K+ L+R+  ++G T+  H+  +N+L++ L+N D K  DE+ AL L++SLP+++E 
Sbjct: 79  NKLLMKKRLFRFDYQQGTTMNAHITMFNQLVAYLLNLDVKFEDEDLALMLVSSLPDEFEH 138

Query: 698 VIKALMHGNDKMTYAEVTIALRSEEFRKMDREDLSSEANNDLLLARGRSTDRRKKTGDRG 519
           +   L+HG D ++   V  AL S E RK D+    S  + + L+ RG    + K+     
Sbjct: 139 LETTLLHGKDNVSLDVVCSALYSHELRKQDKMKTKSTTSEEALVTRGGQQSQTKERRGMC 198

Query: 518 KVKGRSKSRARLQKDECAWCHDFGHWAKDCTKRKDRERDNNEVNIAKASEDLVEASDFSL 339
           K KGR      + KDECA+CH+ GHW KDC K + +E+   + N+A+   D+   SD SL
Sbjct: 199 KSKGRV-----VAKDECAFCHEKGHWKKDCPKLQKKEKVPQDANVAECKSDV--ESDISL 251

Query: 338 TVIPSTFIVTDGTWVLDSGATYHICPHRDWFSDFEEFD-GEVRMGNNHTCRVIGIGSIRI 162
            V  S     D  W+LDSG TYH+CP RDWF +F+E D G V MGN++ C+  GIGSI++
Sbjct: 252 IVSLSASSYPD-EWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTAGIGSIKL 310

Query: 161 KMHDGMVRELKEVR 120
           + HDG  R L++VR
Sbjct: 311 RNHDGSTRILRDVR 324


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  162 bits (410), Expect(2) = 3e-44
 Identities = 98/272 (36%), Positives = 151/272 (55%), Gaps = 12/272 (4%)
 Frame = -2

Query: 878 NRIYLKRNLYRYYMKRGATLTEHLDSYNKLLSELVNYDEKINDEEQALCLINSLPEKYEP 699
           NRI+LKR LY   M    ++T+H+++ N L S+L   D KI + E+A  L+ SLP+ Y+ 
Sbjct: 94  NRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQ 153

Query: 698 VIKALMHGN--DKMTYAEVTIALRSEEFRKMDREDL--SSEANNDLLLARGRSTDRRKKT 531
           +I  + + N  D + + +V  A+  EE R+ ++E+   SS+    L + RGRST+R    
Sbjct: 154 LIINITNNNIADTLHFDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTER---- 209

Query: 530 GDRGKVK-GRSKSRARLQKDECAWCHDFGHWAKDCTKRKDRERDNNEVNIAKASEDLVEA 354
           G  G    GRSKSR R    +C  C   GH  K+C   K     N+E   ++    +   
Sbjct: 210 GPSGSQNHGRSKSR-RKNNIKCYGCGMKGHVKKECWNNKKNGEKNSEATTSQGC--VAST 266

Query: 353 SDFSLTVIPSTFIVTDG------TWVLDSGATYHICPHRDWFSDFEEF-DGEVRMGNNHT 195
           SD    +       ++G       W++DSGAT+H+ PHRDWF  +E   +G V MGN+H 
Sbjct: 267 SDDGEILYSEAATSSEGERQLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHA 326

Query: 194 CRVIGIGSIRIKMHDGMVRELKEVRFVPSIRR 99
             + G+G+IR+KMHDG VR+++ VR V  +++
Sbjct: 327 LEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKK 358



 Score = 43.9 bits (102), Expect(2) = 3e-44
 Identities = 19/35 (54%), Positives = 29/35 (82%)
 Frame = -1

Query: 105 KKNLISLGTLEAKGYKLVAENGVLKVISGSLVIMK 1
           KKNL+S+G L+  G K+ +E+G+LKV+ G+LV+MK
Sbjct: 357 KKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMK 391


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  161 bits (408), Expect(2) = 7e-44
 Identities = 100/271 (36%), Positives = 153/271 (56%), Gaps = 11/271 (4%)
 Frame = -2

Query: 878 NRIYLKRNLYRYYMKRGATLTEHLDSYNKLLSELVNYDEKINDEEQALCLINSLPEKYEP 699
           NRI+LKR LY   M    ++T+H+++ N L S+L   D KI + E+A  L+ SLP+ Y+ 
Sbjct: 94  NRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQ 153

Query: 698 VIKALMHGN--DKMTYAEVTIALRSEEFRKMDREDL--SSEANNDLLLARGRSTDRRKKT 531
           +I  + + N  D + + +V  A+  EE R+ ++E+   SS+    L + RGRST+R    
Sbjct: 154 LIINITNNNITDTLHFDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTER---- 209

Query: 530 GDRGKVK-GRSKSRARLQKDECAWCHDFGHWAKDCTKRKDRERDNNEVN-----IAKASE 369
           G  G    GRSKSR R +  +C  C   GH  K+C   K     N+E +     +A  S+
Sbjct: 210 GPSGSQNHGRSKSR-RKKNIKCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSD 268

Query: 368 DLVEASDFSLTVIPSTFIVTDGTWVLDSGATYHICPHRDWFSDFEEF-DGEVRMGNNHTC 192
           D       + T       + D  W++DSGAT+H+ PHRDWF  +E   +G V MGN+H  
Sbjct: 269 DGEILYSEAATSSKGERRLND-VWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHAL 327

Query: 191 RVIGIGSIRIKMHDGMVRELKEVRFVPSIRR 99
            + G+G+IR+KMHDG VR+++ VR V  +++
Sbjct: 328 EIAGVGTIRLKMHDGTVRKIQGVRHVKGLKK 358



 Score = 43.5 bits (101), Expect(2) = 7e-44
 Identities = 19/35 (54%), Positives = 28/35 (80%)
 Frame = -1

Query: 105 KKNLISLGTLEAKGYKLVAENGVLKVISGSLVIMK 1
           KKNL+S+G L+  G K+  E+G+LKV+ G+LV+MK
Sbjct: 357 KKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMK 391


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  161 bits (408), Expect(2) = 7e-44
 Identities = 100/271 (36%), Positives = 153/271 (56%), Gaps = 11/271 (4%)
 Frame = -2

Query: 878 NRIYLKRNLYRYYMKRGATLTEHLDSYNKLLSELVNYDEKINDEEQALCLINSLPEKYEP 699
           NRI+LKR LY   M    ++T+H+++ N L S+L   D KI + E+A  L+ SLP+ Y+ 
Sbjct: 94  NRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQ 153

Query: 698 VIKALMHGN--DKMTYAEVTIALRSEEFRKMDREDL--SSEANNDLLLARGRSTDRRKKT 531
           +I  + + N  D + + +V  A+  EE R+ ++E+   SS+    L + RGRST+R    
Sbjct: 154 LIINITNNNIADTLHFDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTER---- 209

Query: 530 GDRGKVK-GRSKSRARLQKDECAWCHDFGHWAKDCTKRKDRERDNNEVN-----IAKASE 369
           G  G    GRSKSR R +  +C  C   GH  K+C   K     N+E +     +A  S+
Sbjct: 210 GPSGSQNHGRSKSR-RKKNIKCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSD 268

Query: 368 DLVEASDFSLTVIPSTFIVTDGTWVLDSGATYHICPHRDWFSDFEEF-DGEVRMGNNHTC 192
           D       + T       + D  W++DSGAT+H+ PHRDWF  +E   +G V MGN+H  
Sbjct: 269 DGEILYSEAATSSKGERRLND-VWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHAL 327

Query: 191 RVIGIGSIRIKMHDGMVRELKEVRFVPSIRR 99
            + G+G+IR+KMHDG VR+++ VR V  +++
Sbjct: 328 EIAGVGTIRLKMHDGTVRKIQGVRHVKGLKK 358



 Score = 43.5 bits (101), Expect(2) = 7e-44
 Identities = 19/35 (54%), Positives = 28/35 (80%)
 Frame = -1

Query: 105 KKNLISLGTLEAKGYKLVAENGVLKVISGSLVIMK 1
           KKNL+S+G L+  G K+  E+G+LKV+ G+LV+MK
Sbjct: 357 KKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMK 391


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  158 bits (400), Expect(2) = 1e-43
 Identities = 86/275 (31%), Positives = 153/275 (55%), Gaps = 12/275 (4%)
 Frame = -2

Query: 887 NVANRIYLKRNLYRYYMKRGATLTEHLDSYNKLLSELVNYDEKINDEEQALCLINSLPEK 708
           ++ ++++LK+ L+ + ++   ++ +HL ++ +++++L + + K ++E+  L L+ SLP  
Sbjct: 37  DLTSKMHLKQKLFLHKLQDDESVMDHLSTFKEIVADLESMEIKYDEEDLGLILLCSLPSS 96

Query: 707 YEPVIKALMHGNDKMTYAEVTIALRSEEFRKMDREDLSSEANNDLLLARGR----STDRR 540
           Y      +++  D +T  EV  AL ++E  K       S +  + L+ RGR    +TD +
Sbjct: 97  YANFRDTILYSRDTLTLQEVYDALHAKEKMKKMVPSEGSNSQPESLVVRGRQQEKNTDNK 156

Query: 539 KKTGDRGKVKGRSKSRARLQKDECAWCHDFGHWAKDCTKRKDRERDNNEVNIAKASEDLV 360
            +       +GRSKSR R +   C +C   GH   DC K +++E+           E+  
Sbjct: 157 SRDKSSSGYRGRSKSRGRYK--SCKYCKRGGHDISDCWKLQNKEKHKGNYKPKGKQEEQG 214

Query: 359 EAS-------DFSLTVIPSTFIVTDGTWVLDSGATYHICPHRDWFSDFEEFD-GEVRMGN 204
           +A+       D  L V  +  + T   W+LD+G TYH+CP+RDWF+ +E    G V MG+
Sbjct: 215 KAAVATDNKPDAELLVAYAGCVQTSDEWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGD 274

Query: 203 NHTCRVIGIGSIRIKMHDGMVRELKEVRFVPSIRR 99
           N  C+V G+G+I+IKM DG +R L +VR +PS++R
Sbjct: 275 NTPCKVAGVGTIQIKMFDGCIRTLSDVRHIPSLKR 309



 Score = 45.8 bits (107), Expect(2) = 1e-43
 Identities = 21/35 (60%), Positives = 27/35 (77%)
 Frame = -1

Query: 105 KKNLISLGTLEAKGYKLVAENGVLKVISGSLVIMK 1
           K+NLISL TL+ KGY+    +G+LKV  GSLV+MK
Sbjct: 308 KRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMK 342


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  160 bits (406), Expect(2) = 1e-43
 Identities = 100/271 (36%), Positives = 152/271 (56%), Gaps = 11/271 (4%)
 Frame = -2

Query: 878 NRIYLKRNLYRYYMKRGATLTEHLDSYNKLLSELVNYDEKINDEEQALCLINSLPEKYEP 699
           NRI+LKR LY   M    ++T+H+++ N L S+L   D KI   E+A  L+ SLP+ Y+ 
Sbjct: 94  NRIFLKRRLYTLQMGESTSVTDHINTLNTLFSQLTASDFKIAKNERAELLLQSLPDSYDQ 153

Query: 698 VIKALMHGN--DKMTYAEVTIALRSEEFRKMDREDL--SSEANNDLLLARGRSTDRRKKT 531
           +I  + + N  D + + +V  A+  EE R+ ++E+   SS+    L + RGRST+R    
Sbjct: 154 LIINITNNNIADTLHFDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTER---- 209

Query: 530 GDRGKVK-GRSKSRARLQKDECAWCHDFGHWAKDCTKRKDRERDNNEVN-----IAKASE 369
           G  G    GRSKSR R +  +C  C   GH  K+C   K     N+E +     +A  S+
Sbjct: 210 GPSGSQNHGRSKSR-RKKNIKCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSD 268

Query: 368 DLVEASDFSLTVIPSTFIVTDGTWVLDSGATYHICPHRDWFSDFEEF-DGEVRMGNNHTC 192
           D       + T       + D  W++DSGAT+H+ PHRDWF  +E   +G V MGN+H  
Sbjct: 269 DGEILYSEAATSSKGERRLND-VWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHAL 327

Query: 191 RVIGIGSIRIKMHDGMVRELKEVRFVPSIRR 99
            + G+G+IR+KMHDG VR+++ VR V  +++
Sbjct: 328 EIAGVGTIRLKMHDGTVRKIQGVRHVKGLKK 358



 Score = 43.5 bits (101), Expect(2) = 1e-43
 Identities = 19/35 (54%), Positives = 28/35 (80%)
 Frame = -1

Query: 105 KKNLISLGTLEAKGYKLVAENGVLKVISGSLVIMK 1
           KKNL+S+G L+  G K+  E+G+LKV+ G+LV+MK
Sbjct: 357 KKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMK 391


>emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]
          Length = 344

 Score =  170 bits (431), Expect(2) = 4e-43
 Identities = 95/264 (35%), Positives = 150/264 (56%), Gaps = 1/264 (0%)
 Frame = -2

Query: 887 NVANRIYLKRNLYRYYMKRGATLTEHLDSYNKLLSELVNYDEKINDEEQALCLINSLPEK 708
           ++ NR+YLK+ L+   MK   ++ +H + +NK + +L N D K+N E+QA+ L+ SLP  
Sbjct: 50  SLKNRLYLKKRLHTLQMKESMSIKDHFNEFNKTIXDLRNIDVKVNYEDQAIFLMCSLPNS 109

Query: 707 YEPVIKALMHGNDKMTYAEVTIALRSEEFRKMDREDLSSEANNDLLLARGRSTDRRKKTG 528
           YE  +  +M+G   +   +V +AL S E +KM  +    ++    L+ARGR+  R+K  G
Sbjct: 110 YEHFVDIMMYGRGTLFIKDVRVALNSRELKKMVFKSRKYDSGEG-LVARGRT--RKKNNG 166

Query: 527 DRGKVKGRSKSRARLQKDECAWCHDFGHWAKDCTKRKDRERDNNEVNIAKASEDLVEASD 348
            RG  + RSKSR     ++C  C   GH+ K+   RK +E   N+ N         + + 
Sbjct: 167 RRG--RSRSKSRG---NNKCFKCKKEGHYVKNXPDRKGKE---NKRNYNSGDATFAKENS 218

Query: 347 FSLTVIPSTFIVTDGTWVLDSGATYHICPHRDWFSDFEEFD-GEVRMGNNHTCRVIGIGS 171
            +  V+      +D  W+LDSG +YH+ P+ DWFS ++  D G+V MGN   C+V+GI  
Sbjct: 219 NTTDVLLVXVTNSDDEWILDSGCSYHMSPNGDWFSTYQPIDGGKVLMGNKVACKVVGIHX 278

Query: 170 IRIKMHDGMVRELKEVRFVPSIRR 99
           I+IKMH G++R L  VR VP + +
Sbjct: 279 IQIKMHGGIIRTLTNVRHVPKLNK 302



 Score = 32.0 bits (71), Expect(2) = 4e-43
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = -1

Query: 102 KNLISLGTLEAKGYKLVAENGVLKVISGSLVIM 4
           KNLI L TL++ G    A  GVL+V  G LV+M
Sbjct: 302 KNLIFLRTLDSNGCIYKAGGGVLRVSKGGLVVM 334


>emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera]
          Length = 894

 Score =  165 bits (418), Expect(2) = 9e-43
 Identities = 84/263 (31%), Positives = 154/263 (58%), Gaps = 1/263 (0%)
 Frame = -2

Query: 887 NVANRIYLKRNLYRYYMKRGATLTEHLDSYNKLLSELVNYDEKINDEEQALCLINSLPEK 708
           ++ANR++    LY + M    ++ EHLD +NK++ +L N D  +++E++A+ L+ SL   
Sbjct: 96  SLANRLHKXIKLYTFKMTPSMSIEEHLDHFNKIILDLKNIDIAVSNEDKAILLLTSLDAS 155

Query: 707 YEPVIKALMHGNDKMTYAEVTIALRSEEFRKMDREDLSSEANNDLLLARGRSTDRRKKTG 528
           Y  + +A+M+G D +T+ EV   L + E  K +    S E   + L  RG+S  R KK G
Sbjct: 156 YTNMKEAIMYGRDILTFDEVQSILHARELHKQEE---SKEELGEGLNIRGKSKKREKKKG 212

Query: 527 DRGKVKGRSKSRARLQKDECAWCHDFGHWAKDCTKRKDRERDNNEVNIAKASEDLVEASD 348
           +  K    S+S+++ +K +C  CH  GH+ KDC    D  ++  +  + +    ++    
Sbjct: 213 NNSK----SRSKSKTKKFKCFICHKEGHFKKDC---PDMRQNTXKKTMNEGDATMILDGY 265

Query: 347 FSLTVIPSTFIVTDGTWVLDSGATYHICPHRDWFSDFEEFD-GEVRMGNNHTCRVIGIGS 171
            +  V+    + +   W+LDSG ++H+CP + WF DF+E + G V +GNN  C+++G G+
Sbjct: 266 DNAGVLNVAEVDSGKEWILDSGCSFHMCPIKAWFEDFKEANGGHVLLGNNKHCKILGTGT 325

Query: 170 IRIKMHDGMVRELKEVRFVPSIR 102
           ++IK +DG+ R L+++R++P ++
Sbjct: 326 VKIKHYDGIERVLEDIRYIPELK 348



 Score = 35.8 bits (81), Expect(2) = 9e-43
 Identities = 18/35 (51%), Positives = 22/35 (62%)
 Frame = -1

Query: 105 KKNLISLGTLEAKGYKLVAENGVLKVISGSLVIMK 1
           K NLISLG L+  GY   +E   L+V  GSL +MK
Sbjct: 348 KMNLISLGMLDKLGYTFKSEPNSLRVARGSLTVMK 382


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  156 bits (395), Expect(2) = 3e-42
 Identities = 93/272 (34%), Positives = 151/272 (55%), Gaps = 12/272 (4%)
 Frame = -2

Query: 878 NRIYLKRNLYRYYMKRGATLTEHLDSYNKLLSELVNYDEKINDEEQALCLINSLPEKYEP 699
           NRI+LKR LY + M    ++ +H+++ N + ++L   D  I + E+A  L+ SLP+ Y+ 
Sbjct: 94  NRIFLKRRLYTFRMSESTSMPDHINNLNTMFAQLSASDFTIGENERAEVLLQSLPDSYDQ 153

Query: 698 VIKALMHGN--DKMTYAEVTIALRSEEFRKMDREDL--SSEANNDLLLARGRSTDRRKKT 531
           ++  + + N  D++++ +V  A+  EE R+ ++ED   SS+    L + RGRST+R    
Sbjct: 154 LVINITNNNIVDRLSFNDVAGAILEEESRRKNKEDRQDSSKQMEALTVTRGRSTER---- 209

Query: 530 GDRGKVK-GRSKSRARLQKDECAWCHDFGHWAKDCTKRKDRERDNNEVNIAKASEDLVEA 354
           G  G    GRS SR R    +C  C   GH  KDC   K     ++E + ++    +   
Sbjct: 210 GPSGSQNHGRSTSR-RKTNLKCYNCGKRGHLKKDCWSNKKSGEKSSEASTSQGC--VAST 266

Query: 353 SDFSLTVIPSTFIVTDG------TWVLDSGATYHICPHRDWFSDFEEF-DGEVRMGNNHT 195
           SD    +     + T G       W++DSGAT+H+ P RDWF  +E   +G V MGN+H 
Sbjct: 267 SDDGEVLYSEAAVSTKGKNRLTDVWIVDSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHA 326

Query: 194 CRVIGIGSIRIKMHDGMVRELKEVRFVPSIRR 99
             ++GIG+++IKM+DG +R L+EVR V  + +
Sbjct: 327 LEIVGIGTVKIKMYDGTIRTLQEVRHVKELAK 358



 Score = 43.1 bits (100), Expect(2) = 3e-42
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = -1

Query: 102 KNLISLGTLEAKGYKLVAENGVLKVISGSLVIMK 1
           KNL+S+G L+  GYK   + G+LKV+ GSLV+MK
Sbjct: 358 KNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMK 391


>emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]
          Length = 947

 Score =  162 bits (410), Expect(2) = 1e-41
 Identities = 85/264 (32%), Positives = 153/264 (57%), Gaps = 1/264 (0%)
 Frame = -2

Query: 887 NVANRIYLKRNLYRYYMKRGATLTEHLDSYNKLLSELVNYDEKINDEEQALCLINSLPEK 708
           ++ANR++ K  LY + +  G ++ EH D +NK++ +L N D  +++E++A+ L+ SL   
Sbjct: 140 SLANRLHKKIKLYTFKITPGMSIEEHFDHFNKIILDLENIDITVSNEDKAILLLTSLDAS 199

Query: 707 YEPVIKALMHGNDKMTYAEVTIALRSEEFRKMDREDLSSEANNDLLLARGRSTDRRKKTG 528
           Y  + +A+M+G D MT+ EV   L   E +K +    S + + + L  RGR   R KK  
Sbjct: 200 YTNMKEAIMYGRDSMTFDEVQSILHPRELQKQEE---SKDESGEGLNIRGRYDKREKKCK 256

Query: 527 DRGKVKGRSKSRARLQKDECAWCHDFGHWAKDCTKRKDRERDNNEVNIAKASEDLVEASD 348
           +      ++KS++  +K +C  CH  GH+ KDC+   D+ ++  +  + +    ++    
Sbjct: 257 NL-----KAKSKSNTKKFKCFICHKEGHFKKDCS---DKRQNTIKKTVNEGDAAVILDGY 308

Query: 347 FSLTVIPSTFIVTDGTWVLDSGATYHICPHRDWFSDFEEFD-GEVRMGNNHTCRVIGIGS 171
            S  V+    + +   W+LDSG ++H+CP + WF DF+E + G V +GNN  C+++G   
Sbjct: 309 DSAKVLNVAEMDSGKEWILDSGCSFHMCPIKAWFEDFKEANGGHVLLGNNKHCKILGTSI 368

Query: 170 IRIKMHDGMVRELKEVRFVPSIRR 99
           +RIK +DG+ R L+ VR++P ++R
Sbjct: 369 VRIKHYDGIERVLEVVRYIPELKR 392



 Score = 35.4 bits (80), Expect(2) = 1e-41
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = -1

Query: 105 KKNLISLGTLEAKGYKLVAENGVLKVISGSLVIMK 1
           K+NLISLG L+  GY   ++   L+V  GSL +MK
Sbjct: 391 KRNLISLGMLDKLGYTFKSKPNSLRVARGSLTVMK 425


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  152 bits (383), Expect(2) = 2e-41
 Identities = 93/272 (34%), Positives = 149/272 (54%), Gaps = 12/272 (4%)
 Frame = -2

Query: 878 NRIYLKRNLYRYYMKRGATLTEHLDSYNKLLSELVNYDEKINDEEQALCLINSLPEKYEP 699
           N+I+LKR LY   M     +T+H+++   L S+L      I + E+A  L+ SLP+ Y+ 
Sbjct: 94  NKIFLKRKLYTLRMAESTMVTDHINTLKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQ 153

Query: 698 VIKALMHGN--DKMTYAEVTIALRSEEFRKMDRED--LSSEANNDLLLARGRSTDRRKKT 531
           +I  L + N  D + + +V  ++ +EE R+ ++E+   SS+    L + RGRST+R    
Sbjct: 154 LIINLTNNNPVDSLVFDDVAASVLNEESRRKNKENRQASSQQAEALSVTRGRSTER---- 209

Query: 530 GDRGKVK-GRSKSRARLQKDECAWCHDFGHWAKDCTKRKDRERDNNEVNIAKASEDLVEA 354
           G  G    GRSKSR++ +  +C  C   GH  K+C   + R R+  E   + A   +   
Sbjct: 210 GPSGSQNHGRSKSRSK-KNVKCYNCGKKGHVKKECWSNQKR-REGKEPESSNAQGCVAST 267

Query: 353 SDFSLTVIPSTFIVTDG------TWVLDSGATYHICPHRDWFSDFEEFD-GEVRMGNNHT 195
           SD    +     IV++G       W++DSGAT+H+   R+WF  +E    G V MGN+H 
Sbjct: 268 SDDGEILYSEATIVSEGRKRLSDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHA 327

Query: 194 CRVIGIGSIRIKMHDGMVRELKEVRFVPSIRR 99
             + GIG+I+IKM DG +R ++EVR V  +++
Sbjct: 328 LEIAGIGTIKIKMFDGTIRTIEEVRHVNGLKK 359



 Score = 44.7 bits (104), Expect(2) = 2e-41
 Identities = 18/35 (51%), Positives = 28/35 (80%)
 Frame = -1

Query: 105 KKNLISLGTLEAKGYKLVAENGVLKVISGSLVIMK 1
           KKNL+SLG +++ G K   ENG++K++ G+LV+MK
Sbjct: 358 KKNLLSLGQMDSHGCKTHVENGIMKIVKGALVLMK 392


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1312

 Score =  151 bits (381), Expect(2) = 7e-41
 Identities = 84/275 (30%), Positives = 151/275 (54%), Gaps = 12/275 (4%)
 Frame = -2

Query: 887 NVANRIYLKRNLYRYYMKRGATLTEHLDSYNKLLSELVNYDEKINDEEQALCLINSLPEK 708
           ++ ++++LK+ L+ + ++   ++ +HL ++ +++++L + + K ++E+  L L+ SLP  
Sbjct: 130 DLTSKMHLKQKLFLHKLQDDGSVMDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSS 189

Query: 707 YEPVIKALMHGNDKMTYAEVTIALRSEEFRKMDREDLSSEANNDLLLARGRSTDRRKKTG 528
           Y      +++ +D +   EV  AL ++E  K       S +  + L+ RGR  ++  K  
Sbjct: 190 YANFRDTILYSHDTLILKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQ 249

Query: 527 DRGK----VKGRSKSRARLQKDECAWCHDFGHWAKDCTKRKDRER-------DNNEVNIA 381
            R K     +GRSKSR R +   C +C   GH   +C K +D+++          +    
Sbjct: 250 SRDKSSSSYRGRSKSRGRYK--SCKYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEG 307

Query: 380 KASEDLVEASDFSLTVIPSTFIVTDGTWVLDSGATYHICPHRDWFSDFEEFD-GEVRMGN 204
           KA+    E SD  L V  +    T   W+LD+  TYH+CP+RDWF+ +E    G V MG+
Sbjct: 308 KAAVVTDEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGD 367

Query: 203 NHTCRVIGIGSIRIKMHDGMVRELKEVRFVPSIRR 99
           +  C V GIG+++IKM DG +R L +VR +P+++R
Sbjct: 368 DTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKR 402



 Score = 43.9 bits (102), Expect(2) = 7e-41
 Identities = 21/35 (60%), Positives = 27/35 (77%)
 Frame = -1

Query: 105 KKNLISLGTLEAKGYKLVAENGVLKVISGSLVIMK 1
           K++LISL TL+ KGYK    +G+LKV  GSLV+MK
Sbjct: 401 KRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMK 435


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  151 bits (381), Expect(2) = 7e-41
 Identities = 84/275 (30%), Positives = 151/275 (54%), Gaps = 12/275 (4%)
 Frame = -2

Query: 887 NVANRIYLKRNLYRYYMKRGATLTEHLDSYNKLLSELVNYDEKINDEEQALCLINSLPEK 708
           ++ ++++LK+ L+ + ++   ++ +HL ++ +++++L + + K ++E+  L L+ SLP  
Sbjct: 130 DLTSKMHLKQKLFLHKLQDDGSVMDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSS 189

Query: 707 YEPVIKALMHGNDKMTYAEVTIALRSEEFRKMDREDLSSEANNDLLLARGRSTDRRKKTG 528
           Y      +++ +D +   EV  AL ++E  K       S +  + L+ RGR  ++  K  
Sbjct: 190 YANFRDTILYSHDTLILKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQ 249

Query: 527 DRGK----VKGRSKSRARLQKDECAWCHDFGHWAKDCTKRKDRER-------DNNEVNIA 381
            R K     +GRSKSR R +   C +C   GH   +C K +D+++          +    
Sbjct: 250 SRDKSSSSYRGRSKSRGRYK--SCKYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEG 307

Query: 380 KASEDLVEASDFSLTVIPSTFIVTDGTWVLDSGATYHICPHRDWFSDFEEFD-GEVRMGN 204
           KA+    E SD  L V  +    T   W+LD+  TYH+CP+RDWF+ +E    G V MG+
Sbjct: 308 KAAVVTDEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGD 367

Query: 203 NHTCRVIGIGSIRIKMHDGMVRELKEVRFVPSIRR 99
           +  C V GIG+++IKM DG +R L +VR +P+++R
Sbjct: 368 DTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKR 402



 Score = 43.9 bits (102), Expect(2) = 7e-41
 Identities = 21/35 (60%), Positives = 27/35 (77%)
 Frame = -1

Query: 105 KKNLISLGTLEAKGYKLVAENGVLKVISGSLVIMK 1
           K++LISL TL+ KGYK    +G+LKV  GSLV+MK
Sbjct: 401 KRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMK 435


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  151 bits (381), Expect(2) = 7e-41
 Identities = 84/275 (30%), Positives = 150/275 (54%), Gaps = 12/275 (4%)
 Frame = -2

Query: 887 NVANRIYLKRNLYRYYMKRGATLTEHLDSYNKLLSELVNYDEKINDEEQALCLINSLPEK 708
           ++ ++++LK+ L+ + ++   ++ +HL ++ +++++L + + K ++E+  L L+ SLP  
Sbjct: 4   DLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEEDLGLILLCSLPSS 63

Query: 707 YEPVIKALMHGNDKMTYAEVTIALRSEEFRKMDREDLSSEANNDLLLARGRSTDRRKKTG 528
           Y      +++  D +T  EV  AL ++E  K       S +  + L+ RGR  ++     
Sbjct: 64  YANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTNNK 123

Query: 527 DRGK----VKGRSKSRARLQKDECAWCHDFGHWAKDCTKRKDRER-------DNNEVNIA 381
            R K     +GRSKSR R +   C +C   GH   +C K +D+++          +    
Sbjct: 124 SRDKSSSIYRGRSKSRGRYK--SCKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEG 181

Query: 380 KASEDLVEASDFSLTVIPSTFIVTDGTWVLDSGATYHICPHRDWFSDFEEFD-GEVRMGN 204
           KA+    E SD  L V  +    T   W+LD+  TYH+CP+RDWF+ +E    G V MG+
Sbjct: 182 KAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGD 241

Query: 203 NHTCRVIGIGSIRIKMHDGMVRELKEVRFVPSIRR 99
           +  C V GIG+++IKM DG +R L +VR +P+++R
Sbjct: 242 DTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKR 276



 Score = 43.9 bits (102), Expect(2) = 7e-41
 Identities = 21/35 (60%), Positives = 27/35 (77%)
 Frame = -1

Query: 105 KKNLISLGTLEAKGYKLVAENGVLKVISGSLVIMK 1
           K++LISL TL+ KGYK    +G+LKV  GSLV+MK
Sbjct: 275 KRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMK 309


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  173 bits (439), Expect = 7e-41
 Identities = 99/260 (38%), Positives = 140/260 (53%), Gaps = 1/260 (0%)
 Frame = -2

Query: 887 NVANRIYLKRNLYRYYMKRGATLTEHLDSYNKLLSELVNYDEKINDEEQALCLINSLPEK 708
           ++ N++ LK+ L+   M  G  L EHL+  N LL EL N D KI DE+ AL L+ SLP  
Sbjct: 93  SLTNKLLLKQRLFGLRMAEGTQLREHLEQLNTLLLELRNIDVKIEDEDAALILLVSLPMS 152

Query: 707 YEPVIKALMHGNDKMTYAEVTIALRSEEFRKMDREDLSSEANNDLLLARGRSTDRRKKTG 528
           +E  +++ + G D ++  EV  AL S E R        +   +  +   G  T  RK   
Sbjct: 153 FENFVQSFIVGKDTVSLEEVRSALHSRELRH------KANGTSTDIQPSGLFTSSRKGRK 206

Query: 527 DRGKVKGRSKSRARLQKDECAWCHDFGHWAKDCTKRKDRERDNNEVNIAKASEDLVEASD 348
           + GK K +  S+     D C +C + GHW  DC K+K ++ +   V+ A A ED     D
Sbjct: 207 NGGK-KNKPMSKGAKPDDVCNYCKEKGHWKFDCPKKK-KQSEKQSVSAAVAEEDTNSEED 264

Query: 347 FSLTVIPSTFIVTDGTWVLDSGATYHICPHRDWFSDFEEFD-GEVRMGNNHTCRVIGIGS 171
            +L     T       WVLDSGA+YHICP R+WF+ +E+ D G + M N+  C+V+G GS
Sbjct: 265 IALVADEHTH--HSDVWVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGS 322

Query: 170 IRIKMHDGMVRELKEVRFVP 111
           I+I+ HDG    L EVR VP
Sbjct: 323 IKIRTHDGSFCTLNEVRHVP 342


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  145 bits (366), Expect(2) = 2e-40
 Identities = 90/272 (33%), Positives = 147/272 (54%), Gaps = 12/272 (4%)
 Frame = -2

Query: 878 NRIYLKRNLYRYYMKRGATLTEHLDSYNKLLSELVNYDEKINDEEQALCLINSLPEKYEP 699
           N+I+LKR LY   M     +T+H+++   L S+L      I + E+A  L+ SLP+ Y+ 
Sbjct: 94  NKIFLKRKLYTLRMAESTMVTDHINTLKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQ 153

Query: 698 VIKALMHGN--DKMTYAEVTIALRSEEFRKMDRED--LSSEANNDLLLARGRSTDRRKKT 531
           +I  L + N  + + + +V  ++ +EE R+ ++E+   SS+    L + RGRST+R    
Sbjct: 154 LIINLTNNNPVESLVFDDVAASVLNEESRRKNKENRQASSQQAEALSVTRGRSTER---- 209

Query: 530 GDRG-KVKGRSKSRARLQKDECAWCHDFGHWAKDCTKRKDRERDNNEVNIAKASEDLVEA 354
           G  G + +GRSK R + +  +C  C   GH  K+C   + R R+  E   + A   +   
Sbjct: 210 GPSGSQNQGRSKFRGK-KNVKCYNCGKKGHVKKECWSNQKR-REGKEPETSNAQGCVAST 267

Query: 353 SDFSLTVIPSTFIVTDG------TWVLDSGATYHICPHRDWFSDFEEFD-GEVRMGNNHT 195
           SD    +      V++G       W++DSGAT+H+   R+WF  +E    G V MGN+H 
Sbjct: 268 SDDGEILYSEATTVSEGRKRLSDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHA 327

Query: 194 CRVIGIGSIRIKMHDGMVRELKEVRFVPSIRR 99
             + GIG+I+IKM DG +R + EVR V  +++
Sbjct: 328 LEIAGIGTIKIKMFDGTIRTIGEVRHVNGLKK 359



 Score = 48.1 bits (113), Expect(2) = 2e-40
 Identities = 19/35 (54%), Positives = 29/35 (82%)
 Frame = -1

Query: 105 KKNLISLGTLEAKGYKLVAENGVLKVISGSLVIMK 1
           KKNL+SLG +++ GYK   ENG++K++ G+LV+MK
Sbjct: 358 KKNLLSLGQMDSHGYKTHVENGIMKIVKGALVLMK 392


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|53370655|gb|AAU89150.1| integrase core domain
           containing protein [Oryza sativa Japonica Group]
           gi|108710286|gb|ABF98081.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1322

 Score =  151 bits (382), Expect(2) = 3e-40
 Identities = 78/270 (28%), Positives = 153/270 (56%), Gaps = 7/270 (2%)
 Frame = -2

Query: 887 NVANRIYLKRNLYRYYMKRGATLTEHLDSYNKLLSELVNYDEKINDEEQALCLINSLPEK 708
           ++ +++++K  L+ + +    ++  H+  + +++++LV+ + + +DE+  L L+ SLP  
Sbjct: 97  DLTSKMHIKMKLFSHKLHESGSVLNHISVFKEIVADLVSMEVQFDDEDLGLLLLCSLPSS 156

Query: 707 YEPVIKALMHGNDKMTYAEVTIALRSEEFRKMDREDLSSEANNDLLLARGRSTDRR---K 537
           Y      ++   D++T AEV  AL++ E  K   +  +S +  + L  RGRS  R     
Sbjct: 157 YANFRHTILLSRDELTLAEVYEALQNREKMKGMVQSYASSSKGEALQVRGRSEQRTYNDS 216

Query: 536 KTGDRGKVKGRSKSRARLQKDECAWCHDFGHWAKDCTK--RKDRERDNNEVNIAKASEDL 363
              D+ + +GRSKSR    K  C +C    H+ ++C K   K++ + + + ++  ++E+ 
Sbjct: 217 NDHDKSQSRGRSKSRG---KKFCKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSAEN- 272

Query: 362 VEASDFSLTVIPSTFIVTDGTWVLDSGATYHICPHRDWFSDFEEFDGE--VRMGNNHTCR 189
             +      V+ + ++ +   W+LD+  ++HIC +RDWFS ++    E  VRMG+++   
Sbjct: 273 --SDSGDCLVVFAGYVASHDEWILDTACSFHICINRDWFSSYKSVQNEDVVRMGDDNPRE 330

Query: 188 VIGIGSIRIKMHDGMVRELKEVRFVPSIRR 99
           ++GIGS++IK HDGM R LK+VR +P + R
Sbjct: 331 IVGIGSVQIKTHDGMTRTLKDVRHIPGMAR 360



 Score = 41.2 bits (95), Expect(2) = 3e-40
 Identities = 20/33 (60%), Positives = 24/33 (72%)
 Frame = -1

Query: 102 KNLISLGTLEAKGYKLVAENGVLKVISGSLVIM 4
           +NLISL TL+A+GYK     GV+KV  GSLV M
Sbjct: 360 RNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYM 392


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  148 bits (374), Expect(2) = 4e-40
 Identities = 82/275 (29%), Positives = 151/275 (54%), Gaps = 12/275 (4%)
 Frame = -2

Query: 887 NVANRIYLKRNLYRYYMKRGATLTEHLDSYNKLLSELVNYDEKINDEEQALCLINSLPEK 708
           ++ ++++LK+ L+ + ++   ++ +HL ++ +++++L + + K ++++ AL L+ SLP  
Sbjct: 95  DLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEKDLALILLCSLPSS 154

Query: 707 YEPVIKALMHGNDKMTYAEVTIALRSEEFRKMDREDLSSEANNDLLLARG----RSTDRR 540
           Y      +++  D +T  EV  AL ++E  K       S +  + L+ RG    ++T+ +
Sbjct: 155 YANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGSQQEKNTNNK 214

Query: 539 KKTGDRGKVKGRSKSRARLQKDECAWCHDFGHWAKDCTKRKDRER-------DNNEVNIA 381
            +       +GRSKSR R +   C +C   GH    C K +D+++          +    
Sbjct: 215 SRDKSSSSYRGRSKSRGRYK--SCKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEG 272

Query: 380 KASEDLVEASDFSLTVIPSTFIVTDGTWVLDSGATYHICPHRDWFSDFEEFD-GEVRMGN 204
           KA+    E SD  L V  +    T   W+LD+  TYH+CP+RDWF+ +E    G V MG+
Sbjct: 273 KAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGD 332

Query: 203 NHTCRVIGIGSIRIKMHDGMVRELKEVRFVPSIRR 99
           +  C V GIG+++IKM DG +R L +VR +P+++R
Sbjct: 333 DTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKR 367



 Score = 43.9 bits (102), Expect(2) = 4e-40
 Identities = 21/35 (60%), Positives = 27/35 (77%)
 Frame = -1

Query: 105 KKNLISLGTLEAKGYKLVAENGVLKVISGSLVIMK 1
           K++LISL TL+ KGYK    +G+LKV  GSLV+MK
Sbjct: 366 KRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMK 400


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77549942|gb|ABA92739.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1373

 Score =  148 bits (373), Expect(2) = 7e-40
 Identities = 88/271 (32%), Positives = 153/271 (56%), Gaps = 8/271 (2%)
 Frame = -2

Query: 887 NVANRIYLKRNLYRYYMKRGATLTEHLDSYNKLLSELVNYDEKINDEEQALCLINSLPEK 708
           ++ +++ +K  L+   MK   ++  H+  + K++++LV+ + K +DE+  L L+ SLP  
Sbjct: 93  DLTSKMQMKMKLFTLKMKEEDSVITHMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNS 152

Query: 707 YEPVIKALMHGNDKMTYAEVTIALRSEEFRK-MDREDLSSEANNDLLLARGRSTDR--RK 537
           Y      ++   D++T  EV  AL+++E  K M + D SS +  + L  RGR+ +R   +
Sbjct: 153 YANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNE 212

Query: 536 KTGDRGKVKGRSKSRARLQKDECAWCHDFGHWAKDCTKRKDRERDN---NEVNIAKASED 366
           K  DR   +GRSKS+    K  C +C    H   +C K + +ER N    +V++A A+  
Sbjct: 213 KNYDR---RGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAAS 269

Query: 365 LVEASDFSLTVIPSTFIVTDGTWVLDSGATYHICPHRDWFSDFE--EFDGEVRMGNNHTC 192
             ++ D    V+ +  +     W+LDS  ++HIC  R+WFS ++  +    VRMG+++ C
Sbjct: 270 DDDSGD--CLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPC 327

Query: 191 RVIGIGSIRIKMHDGMVRELKEVRFVPSIRR 99
            ++GIGS++IK  DGM R LK VR++P + R
Sbjct: 328 AIVGIGSVQIKTDDGMTRTLKNVRYIPGMSR 358



 Score = 43.5 bits (101), Expect(2) = 7e-40
 Identities = 21/34 (61%), Positives = 26/34 (76%)
 Frame = -1

Query: 102 KNLISLGTLEAKGYKLVAENGVLKVISGSLVIMK 1
           +NLISL TL+A+GYK    +GVLKV  GSLV +K
Sbjct: 358 RNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLK 391