BLASTX nr result

ID: Papaver23_contig00034023 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver23_contig00034023
         (494 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...   157   1e-36
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...   157   1e-36
emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga...   156   1e-36
emb|CAB75484.1| putative protein [Arabidopsis thaliana]               153   1e-35
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...   150   1e-34

>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1524

 Score =  157 bits (396), Expect = 1e-36
 Identities = 71/158 (44%), Positives = 105/158 (66%), Gaps = 1/158 (0%)
 Frame = -2

Query: 493  GMPALFYKKCWEMIGEDVTKTVQDCFNTASLPPGLNHTNLVLIPKVKNPTVPSDYRPLDI 314
            G+ A FYK CW+++G DV   V+  F T+ + P +NHTN+ +IPK+ NPT  SDYRP+ +
Sbjct: 606  GLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIAL 665

Query: 313  TNILYKVVTKILAQRLKVHLNELIDTAQSAFIPGRLIIHNIVTTKEIIHSMSHSKSILGV 134
             N+LYKV++K L  RLK HLN ++  +Q+AFIPGR+I  N++   E++HS+   K +   
Sbjct: 666  CNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKT 725

Query: 133  F-ALKIDISKAYDKISWIFLSHCLGIFGIVGKTHDLIM 23
            + A+K D+SKAYD++ W FL   + +FG   K    IM
Sbjct: 726  YMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIM 763


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score =  157 bits (396), Expect = 1e-36
 Identities = 71/158 (44%), Positives = 105/158 (66%), Gaps = 1/158 (0%)
 Frame = -2

Query: 493  GMPALFYKKCWEMIGEDVTKTVQDCFNTASLPPGLNHTNLVLIPKVKNPTVPSDYRPLDI 314
            G+ A FYK CW+++G DV   V+  F T+ + P +NHTN+ +IPK+ NPT  SDYRP+ +
Sbjct: 832  GLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIAL 891

Query: 313  TNILYKVVTKILAQRLKVHLNELIDTAQSAFIPGRLIIHNIVTTKEIIHSMSHSKSILGV 134
             N+LYKV++K L  RLK HLN ++  +Q+AFIPGR+I  N++   E++HS+   K +   
Sbjct: 892  CNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKT 951

Query: 133  F-ALKIDISKAYDKISWIFLSHCLGIFGIVGKTHDLIM 23
            + A+K D+SKAYD++ W FL   + +FG   K    IM
Sbjct: 952  YMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIM 989


>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score =  156 bits (395), Expect = 1e-36
 Identities = 77/165 (46%), Positives = 111/165 (67%), Gaps = 1/165 (0%)
 Frame = -2

Query: 493 GMPALFYKKCWEMIGEDVTKTVQDCFNTASLPPGLNHTNLVLIPKVKNPTVPSDYRPLDI 314
           GM A+FY+K W +IG+DVT+ V    + +  P  +NHTN+ LIPKVKNPT P+++RP+ +
Sbjct: 454 GMHAIFYQKFWHIIGDDVTQFVSSILHGSISPSCINHTNIALIPKVKNPTTPAEFRPIAL 513

Query: 313 TNILYKVVTKILAQRLKVHLNELIDTAQSAFIPGRLIIHNIVTTKEIIHSMSH-SKSILG 137
            N++YK+V+K L  RLK  L  L+   QSAF+PGRLI  N +   E+ HSM H ++S  G
Sbjct: 514 CNVVYKLVSKALVIRLKDFLPRLVSENQSAFVPGRLITDNALIAMEVFHSMKHRNRSRKG 573

Query: 136 VFALKIDISKAYDKISWIFLSHCLGIFGIVGKTHDLIMNYISTES 2
             A+K+D+SKAYD++ W FL   L   G  G+  +LIM+ +S+ S
Sbjct: 574 TIAMKLDMSKAYDRVEWGFLRKLLLTMGFDGRWVNLIMSCVSSVS 618


>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
          Length = 851

 Score =  153 bits (387), Expect = 1e-35
 Identities = 69/158 (43%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
 Frame = -2

Query: 493 GMPALFYKKCWEMIGEDVTKTVQDCFNTASLPPGLNHTNLVLIPKVKNPTVPSDYRPLDI 314
           G+ A FYK+CW+++G DV K V+  F ++ +   +NHTN+ +IPK++NP   SDYRP+ +
Sbjct: 71  GLTARFYKQCWDIVGNDVIKEVKLFFESSHMKTSVNHTNICMIPKIQNPQTLSDYRPIAL 130

Query: 313 TNILYKVVTKILAQRLKVHLNELIDTAQSAFIPGRLIIHNIVTTKEIIHSMSHSKSILGV 134
            N+LYKV++K +  RLK HLN ++  +Q+AFIPGR+I  N++   EI+HS+   K +   
Sbjct: 131 CNVLYKVISKCMVNRLKAHLNSIVSDSQAAFIPGRIINDNVMIAHEIMHSLKVRKRVSKT 190

Query: 133 F-ALKIDISKAYDKISWIFLSHCLGIFGIVGKTHDLIM 23
           + A+K D+SKAYD++ W FL   + +FG   K    IM
Sbjct: 191 YMAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWIGWIM 228


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score =  150 bits (378), Expect = 1e-34
 Identities = 66/148 (44%), Positives = 101/148 (68%), Gaps = 1/148 (0%)
 Frame = -2

Query: 493  GMPALFYKKCWEMIGEDVTKTVQDCFNTASLPPGLNHTNLVLIPKVKNPTVPSDYRPLDI 314
            G+ A FYK CWE++G DV K V+  F T+ +   +NHTN+ +IPK+ NP   SDYRP+ +
Sbjct: 832  GLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIAL 891

Query: 313  TNILYKVVTKILAQRLKVHLNELIDTAQSAFIPGRLIIHNIVTTKEIIHSMSHSKSI-LG 137
             N+LYK+++K L +RLK HL+ ++  +Q+AFIPGRL+  N++   E++HS+   K +   
Sbjct: 892  CNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQS 951

Query: 136  VFALKIDISKAYDKISWIFLSHCLGIFG 53
              A+K D+SKAYD++ W FL   + +FG
Sbjct: 952  YMAVKTDVSKAYDRVEWNFLETTMRLFG 979


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