BLASTX nr result

ID: Papaver23_contig00033039 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver23_contig00033039
         (611 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC28197.1| contains similarity to reverse transcriptases [Ar...    69   5e-10
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...    69   7e-10
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...    62   1e-07
emb|CAN63032.1| hypothetical protein VITISV_024672 [Vitis vinifera]    60   3e-07
gb|EEC81314.1| hypothetical protein OsI_24468 [Oryza sativa Indi...    59   5e-07

>gb|AAC28197.1| contains similarity to reverse transcriptases [Arabidopsis
           thaliana] gi|7267156|emb|CAB77868.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 1077

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 35/102 (34%), Positives = 54/102 (52%)
 Frame = -3

Query: 606 SNISAIQGPLGLWYDSRAEIEQVLLSHFSSISKTSQPPVN*QILDLFSPCISADENDSLI 427
           + IS I+   G      +EI + +  +F  I  + +      + +  SPCI+ D N++LI
Sbjct: 342 NTISVIENSAGTSVYEDSEIIETISDYFQDIFTSQEGDRTSVVAEALSPCITTDMNNTLI 401

Query: 426 RLPYAQKIKDVVFSIRPWASPGNDGFQADFYQNCWDTISTEM 301
            LP   +IK    SI P  +PG DGF A F+Q+ W T+S E+
Sbjct: 402 SLPTVAEIKQACLSIHPDKAPGRDGFSASFFQSNWSTVSEEI 443


>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score = 68.9 bits (167), Expect = 7e-10
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%)
 Frame = -3

Query: 609 RSNISAIQGPLGLWYDSRAEIEQVLLSHFSSISKTSQPPVN*QILDLFSPCISADENDSL 430
           R+ I+ +    G+W   R EI  V+  +F  +  T  P      L+  S C+S D N +L
Sbjct: 368 RNTINELLDENGVWKKGREEICGVVQHYFEGLFATDSPVNMELALEGLSHCVSTDMNTAL 427

Query: 429 IRLPYAQKIKDVVFSIRPWASPGNDGFQADFYQNCWDTISTEMIVCFSFKQMLLK----- 265
           + LP   ++K+ +F++ P  +PG DG  A F+Q  W  + +++I   SF Q   +     
Sbjct: 428 LMLPSGDEVKEALFAMHPNKAPGIDGLHALFFQKFWHILGSDVI---SFVQSWWRGMGDL 484

Query: 264 CITSRICFILFIKLLVKLSICISRPFSLVSIL 169
            + ++ C +L  K     S+   RP SL ++L
Sbjct: 485 GVVNKTCIVLIPKCDHPQSMKDFRPISLCTVL 516


>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1229

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
 Frame = -3

Query: 609 RSNISAIQGPLGLWYDSRAEIEQVLLSHFSSISKTSQPPVN*QILD-LFSPCISADENDS 433
           ++ ++ ++   G+      +I Q++  +F  I  TS+   +  ++D    P +S  +ND 
Sbjct: 260 QNRLTVMEDINGVAQHEEHQISQIISGYFQQIF-TSESDGDFSVVDEAIEPMVSQGDNDF 318

Query: 432 LIRLPYAQKIKDVVFSIRPWASPGNDGFQADFYQNCWDTISTEM 301
           L R+P  +++KD VFSI    +PG DGF A FY + W  IST++
Sbjct: 319 LTRIPNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDV 362


>emb|CAN63032.1| hypothetical protein VITISV_024672 [Vitis vinifera]
          Length = 1413

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
 Frame = -3

Query: 480  ILDLFSPCISADENDSLIRLPYAQKIKDVVFSIRPWASPGNDGFQADFYQNCWDTISTEM 301
            +  L SP IS ++N+SL R    +++KD +F++ P  SPGNDGF   FYQ  W+ +  ++
Sbjct: 700  VQSLISPVISVEQNESLTRPFAVEEVKDALFAMHPDKSPGNDGFSPGFYQRHWEIVGEDV 759

Query: 300  I-VCFSF-KQMLLKCITSRICFILFIKLLVKLSICISRPFSLVSILLML 160
               C  +    +     +R   +L  K    +S+   RP SL +++  +
Sbjct: 760  ANACIGWLNDGMFPDSLTRTNIVLIPKKSEVISMTDLRPISLCNVIFKI 808


>gb|EEC81314.1| hypothetical protein OsI_24468 [Oryza sativa Indica Group]
          Length = 797

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 2/149 (1%)
 Frame = -3

Query: 609  RSNISAIQGPLGLWYDSRAEIEQVLLSHFSSISKTSQPPVN*QILDLFSPCISADENDSL 430
            ++ IS ++   G  +++   IE++   +F  I K         +  LF   ++A  N++L
Sbjct: 562  KNRISRLRASDGTIHNTATTIEKLATDYFKEIYKADPNLDQASVSQLFQKKVTAAMNENL 621

Query: 429  IRLPYAQKIKDVVFSIRPWASPGNDGFQADFYQNCWDTISTEMIVCFS--FKQMLLKCIT 256
             +    ++I D +F I P  +PG DGF A FYQ  W TI ++++      F   ++    
Sbjct: 622  CKEFTDEEIADALFQIGPLKAPGPDGFPARFYQRNWATIKSDVVAAVKEFFHSGIMPEGA 681

Query: 255  SRICFILFIKLLVKLSICISRPFSLVSIL 169
            +    +L  K+   + +   RP SL ++L
Sbjct: 682  NETAIVLIPKIDQPVELKDFRPISLCNVL 710


Top