BLASTX nr result

ID: Papaver23_contig00031870 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver23_contig00031870
         (660 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp...    59   3e-17
gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas...    71   2e-16
emb|CCH50966.1| T4.5 [Malus x robusta]                                 73   4e-11
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]      73   4e-11
emb|CAB43904.1| putative protein [Arabidopsis thaliana] gi|72697...    73   4e-11

>gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1296

 Score = 59.3 bits (142), Expect(2) = 3e-17
 Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
 Frame = -1

Query: 282 PLHFIHESSSKALYGVTCQISAE--VWHKRLAHPSFQIMQHVCSSLSSSVMRTPI--F*N 115
           PL+ +  SS  + +      +++  +WH+RL HPS  ++ H+ SSLS SV +T +     
Sbjct: 471 PLYSVTPSSYPSSHHALAATTSDSFIWHRRLGHPSSTLLSHLLSSLSISVPKTDLTSLCQ 530

Query: 114 DCQLGRSHKLPFSISTHCSLYPLEILHLDLW-GPCPVTS 1
            CQLG+  +LPF  S   +    EI+H D+W  P P  S
Sbjct: 531 ACQLGKHTRLPFFNSNTIASSLFEIVHSDIWTSPVPSIS 569



 Score = 54.7 bits (130), Expect(2) = 3e-17
 Identities = 27/56 (48%), Positives = 36/56 (64%)
 Frame = -3

Query: 475 STPNHTFSSNNVLLVPQASHNFLFVHKFTTDNDCSIIFDTYGFSMKDLFTGKTVLQ 308
           S P+ +FS  NVL+ P    N + V KF TDN C+I FD +GFS+KDL T   +L+
Sbjct: 410 SYPSRSFSLRNVLVCPAIVKNLVSVRKFVTDNWCTIEFDPFGFSVKDLKTRNKLLR 465


>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
           Arabidopsis thaliana BAC gb|AF080119 and is a member of
           the reverse transcriptase family PF|00078 [Arabidopsis
           thaliana]
          Length = 1415

 Score = 71.2 bits (173), Expect(2) = 2e-16
 Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
 Frame = -1

Query: 279 LHFIHESSSKALYGVT-CQISAEVWHKRLAHPSFQIMQHVCSSLSSSV--MRTPIF*NDC 109
           L+ +      ALY    C  + EVWH RL H + + +QH+ +S +  +   RT      C
Sbjct: 432 LYVLENQEFVALYSNRQCAATEEVWHHRLGHANSKALQHLQNSKAIQINKSRTSPVCEPC 491

Query: 108 QLGRSHKLPFSISTHCSLYPLEILHLDLWGPCPVTS 1
           Q+G+S +LPF IS    L+PL+ +H DLWGP PV S
Sbjct: 492 QMGKSSRLPFLISDSRVLHPLDRIHCDLWGPSPVVS 527



 Score = 40.4 bits (93), Expect(2) = 2e-16
 Identities = 21/53 (39%), Positives = 25/53 (47%)
 Frame = -3

Query: 448 NNVLLVPQASHNFLFVHKFTTDNDCSIIFDTYGFSMKDLFTGKTVLQGPHHNG 290
           N VL+VP    + L V K   D  C + FD     + DL T K V  GP  NG
Sbjct: 379 NEVLVVPNIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLQTQKVVTTGPRRNG 431


>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 35/61 (57%), Positives = 42/61 (68%)
 Frame = -3

Query: 472 TPNHTFSSNNVLLVPQASHNFLFVHKFTTDNDCSIIFDTYGFSMKDLFTGKTVLQGPHHN 293
           T + TF  N+VLLVPQASHN L V+KF  DN C + FD +GF +KDL TGK + QGP   
Sbjct: 640 TKHATFRLNDVLLVPQASHNLLSVYKFVYDNWCYLTFDPFGFYVKDLSTGKMLFQGPSEG 699

Query: 292 G 290
           G
Sbjct: 700 G 700



 Score = 55.8 bits (133), Expect = 7e-06
 Identities = 59/238 (24%), Positives = 95/238 (39%), Gaps = 20/238 (8%)
 Frame = -1

Query: 654  LSIMLASADIMRENPWYADTSDNNHITSDDSELQRVSLYEGQ*NIPAANTH---ITHT-- 490
            +S M +SA     + W  D+  ++H+T D S L     Y G   +   +     I+HT  
Sbjct: 579  MSAMTSSAS---PSYWLTDSGASHHVTPDPSALNSAIPYSGNDQLFVGDGKGLCISHTGS 635

Query: 489  CFS*NLHQIIHLVPIMFYSYLKP-LTTFYLFIS---LPLTMIVPSFLILMVFL*KTYLLG 322
                  H    L  ++        L + Y F+      LT     F +      K    G
Sbjct: 636  ALIRTKHATFRLNDVLLVPQASHNLLSVYKFVYDNWCYLTFDPFGFYV------KDLSTG 689

Query: 321  RLFYKALIIMVFYPLHFIHESSSKALYGVTCQISA--------EVWHKRLAHPSFQIMQH 166
            ++ ++       YP ++   ++S  + G+    +A          WH+RL HPS   +  
Sbjct: 690  KMLFQGPSEGGLYPFYW---NASNGVSGIAISPTALMIAKADIHTWHRRLGHPSGGTLHS 746

Query: 165  VCSSLSSSVM---RTPIF*NDCQLGRSHKLPFSISTHCSLYPLEILHLDLWGPCPVTS 1
            V       V+           CQLG+S++L FS     S  PL++LH D+WGP P +S
Sbjct: 747  VVHKNHLPVIGYVNNMSVCTACQLGKSYRLSFSTLPCTSSRPLQLLHTDVWGPSPTSS 804


>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1210

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 16/226 (7%)
 Frame = -1

Query: 639 ASADIMRENPWYADTSDNNHITSDDSELQRVSLYEGQ*NIPAAN------THITHTCF-- 484
           A+A    ++ WY DT   +HIT++  +L     Y G+  I  A+       HI  +    
Sbjct: 305 AAASYGVDSNWYVDTGATDHITNELEKLTTRDRYNGKEQIHTASGSGMDIKHIGQSTIRT 364

Query: 483 ---S*NLHQIIHLVPIMFYSYLKPLTTFYLFISLPLTMIVPSFLIL--MVFL*KTYLLGR 319
              +  L  I+H+          P T   L  +  L +   +F+ +    F  K  +   
Sbjct: 365 PTRNLYLRNILHV----------PRTKKNLISAHRLAVDNHAFVEVHPRFFAIKDQITKN 414

Query: 318 LFYKALIIMVFYPLHFIHESSSKALYGVTCQISAEVWHKRLAHPSFQIMQHVCSSLSSSV 139
              +       YPL     SS + L  +   +S  +WH RL HPS+QI+Q V S  +   
Sbjct: 415 TLLRGPCCNGLYPLPASTSSSKQVLGAIKPTVS--IWHSRLGHPSWQIVQKVVSHNNLPC 472

Query: 138 M---RTPIF*NDCQLGRSHKLPFSISTHCSLYPLEILHLDLWGPCP 10
           +   +     + CQ G+SH+LPF  ST  S +PLE++  D+WGP P
Sbjct: 473 LGESKELGVCDACQKGKSHQLPFLKSTSASNFPLELVFSDVWGPAP 518


>emb|CAB43904.1| putative protein [Arabidopsis thaliana] gi|7269745|emb|CAB81478.1|
           putative protein [Arabidopsis thaliana]
          Length = 1415

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 63/217 (29%), Positives = 95/217 (43%), Gaps = 10/217 (4%)
 Frame = -1

Query: 621 RENPWYADTSDNNHITSDDSELQRVSLYEGQ*NIPAAN------THITHTCFS*NLHQII 460
           + NPW  D+   +HIT+  S+LQ    Y G+ ++   N      THI     + N   + 
Sbjct: 289 KSNPWVTDSGATSHITNSTSQLQSAQPYSGEDSVIVGNSDFLPITHIGSAVLTSNQGNL- 347

Query: 459 HLVPIMFYSYLKPLTTFYLFISLPLTMIVPSFLILMV--FL*KTYLLGRLFYKALIIMVF 286
              P+        +T   L +S  LT   P  +       + K  L  +L  K       
Sbjct: 348 ---PLRDVLVCPNITKSLLSVS-KLTSDYPCVIEFDSDGVIVKDKLTKQLLTKGTR---H 400

Query: 285 YPLHFIHESSSKALYGVTCQISA-EVWHKRLAHPSFQIMQHVCSSLSSSVMRTPIF*ND- 112
             L+ +      A Y    Q ++ EVWH RL HP+  ++Q +  + +  + +T     D 
Sbjct: 401 NDLYLLENPKFMACYSSRQQATSDEVWHMRLGHPNQDVLQQLLRNKAIVISKTSHSLCDA 460

Query: 111 CQLGRSHKLPFSISTHCSLYPLEILHLDLWGPCPVTS 1
           CQ+G+  KLPF+ S   S   LE +H DLWGP PV S
Sbjct: 461 CQMGKICKLPFASSDFVSSRLLERVHCDLWGPAPVVS 497


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