BLASTX nr result

ID: Papaver23_contig00029583 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver23_contig00029583
         (510 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273302.1| PREDICTED: uncharacterized protein LOC100266...    75   7e-12
ref|XP_002514596.1| splicing factor, arginine/serine-rich 2,rnap...    58   9e-07

>ref|XP_002273302.1| PREDICTED: uncharacterized protein LOC100266325 [Vitis vinifera]
           gi|297734114|emb|CBI15361.3| unnamed protein product
           [Vitis vinifera]
          Length = 648

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 53/136 (38%), Positives = 68/136 (50%), Gaps = 5/136 (3%)
 Frame = +2

Query: 26  SSMKIA---CHRRDVQSHIKIFRENWDALRNGSLQFSSTSGSRNSKTPDSNVFNAKTXXX 196
           SSM +A      R+V +HI+  RENW+ALR+GS+ FSS  G    ++             
Sbjct: 266 SSMSVARTLLRCRNVNAHIQALRENWNALRSGSMTFSSILGDSGGESSQK---------- 315

Query: 197 XXXXXXXNTYNKNVA-ENLSNKKNPYDTDKAWKMLDIAKSVQRAREGK-TTHCVSKHQLG 370
                    YN   +     N    YDT+KAWKM+D AKS+QRA E     H VSKH LG
Sbjct: 316 ---------YNVGASCPKQDNNACSYDTEKAWKMMDKAKSIQRACERTGIIHQVSKHPLG 366

Query: 371 KRNTQADATVTNLNSS 418
           K N   +  V N+ SS
Sbjct: 367 KVNVPKE--VANVKSS 380


>ref|XP_002514596.1| splicing factor, arginine/serine-rich 2,rnap interacting protein,
           putative [Ricinus communis] gi|223546200|gb|EEF47702.1|
           splicing factor, arginine/serine-rich 2,rnap interacting
           protein, putative [Ricinus communis]
          Length = 632

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
 Frame = +2

Query: 53  RDVQSHIKIFRENWDALRNGSLQFSSTSGSRNSK------TP-DSNVFNAKTXXXXXXXX 211
           RDV S+++  RENWDALR+GSL+FSS+S    S+      TP  ++  + ++        
Sbjct: 297 RDVHSYVRALRENWDALRSGSLRFSSSSVESCSRSIAKCYTPVVTHESSGQSHTMSSTSG 356

Query: 212 XXNTYNKNVAENLSNKKNPYDTDKAWKMLDIAKSVQRAREGKTT 343
              T N  +    +  ++ +D  KAWKM+  AKS+ +  +  +T
Sbjct: 357 QQLTINDGLPGTFAQDRHSHDAKKAWKMMAKAKSIHQGSKNPST 400


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