BLASTX nr result

ID: Papaver23_contig00029059 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver23_contig00029059
         (689 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002319944.1| f-box family protein [Populus trichocarpa] g...    60   5e-07
ref|XP_003540862.1| PREDICTED: putative F-box/FBD/LRR-repeat pro...    59   7e-07
ref|XP_003636673.1| F-box family protein [Medicago truncatula] g...    55   1e-05

>ref|XP_002319944.1| f-box family protein [Populus trichocarpa]
           gi|222858320|gb|EEE95867.1| f-box family protein
           [Populus trichocarpa]
          Length = 511

 Score = 59.7 bits (143), Expect = 5e-07
 Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 14/127 (11%)
 Frame = +1

Query: 160 FSNLNYLKLTAAVNKETVKRVSFVLHSSPKLEFLSI----DFFLRRQGIN---------- 297
           F+NL  L+L     K  V  ++F+  SSP L  L +    DF   R+  N          
Sbjct: 361 FNNLKVLELHTGFEKNNVPGLAFLFRSSPTLHTLILKIINDFKTERRQWNRDLWDLSTSA 420

Query: 298 EEESFEPQTTAYEYCFDNLKVVKIKGFRGNENEVALVKSLLENAKILEKMIIVFLKQISA 477
           EE+ +E Q  A     D+LKVVKI GF   ENEV+L K LL++ K L++M +      + 
Sbjct: 421 EEQYWESQLQALRPFLDHLKVVKIHGFLECENEVSLAKFLLKHGKDLQEMTLCTANCCNF 480

Query: 478 NSKLQNQ 498
              L+ Q
Sbjct: 481 KDSLRRQ 487


>ref|XP_003540862.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220-like
           [Glycine max]
          Length = 510

 Score = 59.3 bits (142), Expect = 7e-07
 Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
 Frame = +1

Query: 160 FSNLNYLKLTAAVNKETVKRVSFVLHSSPKLEFLSI----DFFLRRQGINE--------- 300
           F NL +L+L    NK  V  ++ +  SSP L+ L +    ++ + R+  N          
Sbjct: 364 FYNLKHLELHTGFNKSDVPGLTCLFKSSPTLDTLILKIIHEYRIERKEWNRDLWDMTITE 423

Query: 301 -EESFEPQTTAYEYCFDNLKVVKIKGFRGNENEVALVKSLLENAKILEKMII 453
            E+ +E Q    E    +LKVVKI GF   ENEVAL K LL++ K LE+MI+
Sbjct: 424 GEQYWESQIRTLESFLQHLKVVKIHGFLDYENEVALAKFLLKHGKALEEMIL 475


>ref|XP_003636673.1| F-box family protein [Medicago truncatula]
           gi|355502608|gb|AES83811.1| F-box family protein
           [Medicago truncatula]
          Length = 515

 Score = 55.5 bits (132), Expect = 1e-05
 Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 14/110 (12%)
 Frame = +1

Query: 160 FSNLNYLKLTAAVNKETVKRVSFVLHSSPKLEFLSI----DFFLRRQGIN---------- 297
           F NL  L+L  ++NK  V+ ++ +  S P L   ++    D+ + R+  N          
Sbjct: 369 FYNLKSLELHTSLNKSNVQALACLFRSCPTLHTFNLEIINDYKIERKLWNRDLWDMTSTE 428

Query: 298 EEESFEPQTTAYEYCFDNLKVVKIKGFRGNENEVALVKSLLENAKILEKM 447
           EE+ +E Q  + +    +LKVVKIKGF    NEV LVK LL++ K LE+M
Sbjct: 429 EEQYWESQIPSLKSFLQHLKVVKIKGFLDCANEVTLVKFLLKHGKGLEEM 478


Top