BLASTX nr result
ID: Papaver23_contig00024496
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver23_contig00024496
(775 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC08960.1| RNA polymerase II second largest subunit [Peperom... 51 3e-10
gb|AAW22886.1| RNA polymerase II second largest subunit [Isoetes... 49 1e-08
gb|AAY85216.1| RNA polymerase II second largest subunit [Hibbert... 53 3e-08
gb|AAY85204.1| RNA polymerase II second largest subunit [Dilleni... 53 3e-08
gb|AAY85208.1| RNA polymerase II second largest subunit [Euptele... 52 4e-08
>gb|AAC08960.1| RNA polymerase II second largest subunit [Peperomia caperata]
Length = 554
Score = 51.2 bits (121), Expect(3) = 3e-10
Identities = 37/98 (37%), Positives = 51/98 (52%)
Frame = +3
Query: 78 KTIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 257
KT P A+D Q AS ++ H + RHSES + + ++ G+
Sbjct: 366 KTSPIAQDESQGQASRYNRRD-HSTSLRHSESGMVDQVLLTTN-----------ADGLRF 413
Query: 258 DESNIRSVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 371
+ +RSV IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 414 VKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 451
Score = 33.1 bits (74), Expect(3) = 3e-10
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +1
Query: 385 ITPDIILNPHLFLLK-EIGQLTDCIMGRL 468
ITPDII+N H + IGQL +CIMG++
Sbjct: 456 ITPDIIVNQHAIPSRMTIGQLIECIMGKV 484
Score = 25.8 bits (55), Expect(3) = 3e-10
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 2 GLTDKLDNDGLAPHG 46
G DKLD+DGLAP G
Sbjct: 340 GSYDKLDDDGLAPPG 354
>gb|AAW22886.1| RNA polymerase II second largest subunit [Isoetes sp. JZ73]
Length = 536
Score = 48.5 bits (114), Expect(2) = 1e-08
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = +3
Query: 246 GVGVDESNIRSVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 371
G+ ++ +RS+ IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 402 GLRFVKTRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 443
Score = 37.0 bits (84), Expect(2) = 1e-08
Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +1
Query: 385 ITPDIILNPHLFLLK-EIGQLTDCIMGRL 468
ITPDII+NPH + IGQL +CIMG++
Sbjct: 448 ITPDIIVNPHAIXSRMTIGQLIECIMGKV 476
>gb|AAY85216.1| RNA polymerase II second largest subunit [Hibbertia scandens]
Length = 873
Score = 52.8 bits (125), Expect(3) = 3e-08
Identities = 37/98 (37%), Positives = 53/98 (54%)
Frame = +3
Query: 78 KTIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 257
KT P A+D+ Q V+S ++ H + RHSES + + ++ G+
Sbjct: 772 KTSPIAQDDAQGVSSRYTRRD-HSTSLRHSESGMVDQVLLTTN-----------ADGLRF 819
Query: 258 DESNIRSVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 371
+ +RSV IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 820 VKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 857
Score = 25.8 bits (55), Expect(3) = 3e-08
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 2 GLTDKLDNDGLAPHG 46
G DKLD+DGLAP G
Sbjct: 746 GSYDKLDDDGLAPPG 760
Score = 24.6 bits (52), Expect(3) = 3e-08
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 385 ITPDIILNPH 414
ITPDII+NPH
Sbjct: 862 ITPDIIVNPH 871
>gb|AAY85204.1| RNA polymerase II second largest subunit [Dillenia suffruticosa]
Length = 868
Score = 52.8 bits (125), Expect(3) = 3e-08
Identities = 37/98 (37%), Positives = 53/98 (54%)
Frame = +3
Query: 78 KTIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 257
KT P A+D+ Q V+S ++ H + RHSES + + ++ G+
Sbjct: 767 KTSPIAQDDAQGVSSRYTRRD-HSTSLRHSESGMVDQVLLTTN-----------ADGLRF 814
Query: 258 DESNIRSVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 371
+ +RSV IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 815 VKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 852
Score = 25.8 bits (55), Expect(3) = 3e-08
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 2 GLTDKLDNDGLAPHG 46
G DKLD+DGLAP G
Sbjct: 741 GSYDKLDDDGLAPPG 755
Score = 24.6 bits (52), Expect(3) = 3e-08
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 385 ITPDIILNPH 414
ITPDII+NPH
Sbjct: 857 ITPDIIVNPH 866
>gb|AAY85208.1| RNA polymerase II second largest subunit [Euptelea polyandra]
Length = 874
Score = 52.4 bits (124), Expect(3) = 4e-08
Identities = 36/98 (36%), Positives = 50/98 (51%)
Frame = +3
Query: 78 KTIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 257
KT P A++ Q AS + H + RHSES + + ++ G+
Sbjct: 772 KTTPIAQEESQGQASSRYTRRDHSTSLRHSESGMVDQVLLTTN-----------ADGLRF 820
Query: 258 DESNIRSVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 371
+ +RSV IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 821 VKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 858
Score = 25.8 bits (55), Expect(3) = 4e-08
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 2 GLTDKLDNDGLAPHG 46
G DKLD+DGLAP G
Sbjct: 746 GSYDKLDDDGLAPPG 760
Score = 24.6 bits (52), Expect(3) = 4e-08
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 385 ITPDIILNPH 414
ITPDII+NPH
Sbjct: 863 ITPDIIVNPH 872