BLASTX nr result
ID: Papaver23_contig00022962
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver23_contig00022962
(466 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucl... 108 1e-38
emb|CBI25589.3| unnamed protein product [Vitis vinifera] 108 1e-38
ref|XP_004139267.1| PREDICTED: 116 kDa U5 small nuclear ribonucl... 104 6e-37
ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [A... 108 6e-37
ref|XP_002889592.1| hypothetical protein ARALYDRAFT_470642 [Arab... 108 6e-37
>ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component
[Vitis vinifera] gi|147858113|emb|CAN81413.1|
hypothetical protein VITISV_031170 [Vitis vinifera]
Length = 988
Score = 108 bits (270), Expect(2) = 1e-38
Identities = 54/64 (84%), Positives = 57/64 (89%)
Frame = +1
Query: 163 ILTA*RVAYSAFLMATPRLMEPVYYVEIQTHIDCVSANYTVLSHRRVHITSDVPQPSTPA 342
I TA RVAYSAFLMATPRLMEPVYYVEIQT IDCVSA YTVLS RR H+T+DVPQP TPA
Sbjct: 824 IPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPA 883
Query: 343 YIIK 354
YI+K
Sbjct: 884 YIVK 887
Score = 76.6 bits (187), Expect(2) = 1e-38
Identities = 43/69 (62%), Positives = 47/69 (68%), Gaps = 16/69 (23%)
Frame = +3
Query: 3 GPNILLDDYIPSDADKNLLNAVKNSNGQGTQWG---------PIRNVKFKI-------EP 134
GPNILLDD + S+ DKNLLNAVK+S QG QWG PIRNVKFKI EP
Sbjct: 756 GPNILLDDTLSSEVDKNLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEP 815
Query: 135 IHRGTGQII 161
+HRGTGQII
Sbjct: 816 LHRGTGQII 824
>emb|CBI25589.3| unnamed protein product [Vitis vinifera]
Length = 931
Score = 108 bits (270), Expect(2) = 1e-38
Identities = 54/64 (84%), Positives = 57/64 (89%)
Frame = +1
Query: 163 ILTA*RVAYSAFLMATPRLMEPVYYVEIQTHIDCVSANYTVLSHRRVHITSDVPQPSTPA 342
I TA RVAYSAFLMATPRLMEPVYYVEIQT IDCVSA YTVLS RR H+T+DVPQP TPA
Sbjct: 767 IPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPA 826
Query: 343 YIIK 354
YI+K
Sbjct: 827 YIVK 830
Score = 76.6 bits (187), Expect(2) = 1e-38
Identities = 43/69 (62%), Positives = 47/69 (68%), Gaps = 16/69 (23%)
Frame = +3
Query: 3 GPNILLDDYIPSDADKNLLNAVKNSNGQGTQWG---------PIRNVKFKI-------EP 134
GPNILLDD + S+ DKNLLNAVK+S QG QWG PIRNVKFKI EP
Sbjct: 699 GPNILLDDTLSSEVDKNLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEP 758
Query: 135 IHRGTGQII 161
+HRGTGQII
Sbjct: 759 LHRGTGQII 767
>ref|XP_004139267.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like
[Cucumis sativus] gi|449493675|ref|XP_004159406.1|
PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein
component-like [Cucumis sativus]
Length = 988
Score = 104 bits (259), Expect(2) = 6e-37
Identities = 52/64 (81%), Positives = 56/64 (87%)
Frame = +1
Query: 163 ILTA*RVAYSAFLMATPRLMEPVYYVEIQTHIDCVSANYTVLSHRRVHITSDVPQPSTPA 342
I TA RVAYS+FLMATPRLMEPVYYVEIQT IDCVSA YTVLS RR H+T+DV QP TPA
Sbjct: 824 IPTARRVAYSSFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVAQPGTPA 883
Query: 343 YIIK 354
YI+K
Sbjct: 884 YIVK 887
Score = 75.1 bits (183), Expect(2) = 6e-37
Identities = 42/69 (60%), Positives = 47/69 (68%), Gaps = 16/69 (23%)
Frame = +3
Query: 3 GPNILLDDYIPSDADKNLLNAVKNSNGQGTQWG---------PIRNVKFKI-------EP 134
GPNILLDD + S+ DKNLLNAVK+S QG QWG PIRNVKFKI EP
Sbjct: 756 GPNILLDDTLSSEVDKNLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEP 815
Query: 135 IHRGTGQII 161
+HRG+GQII
Sbjct: 816 LHRGSGQII 824
>ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana]
gi|30679607|ref|NP_849600.1| U5 small nuclear
ribonucleoprotein component [Arabidopsis thaliana]
gi|8844127|gb|AAF80219.1|AC025290_8 Contains similarity
to an U5 snRNP-specific protein 116 kD from Homo sapiens
gi|4759280 and contains elongation factor G C-terminus
PF|00679 and is a member of the elongation factor Tu
family PF|00009 [Arabidopsis thaliana]
gi|110741512|dbj|BAE98706.1| elongation factor like
protein [Arabidopsis thaliana]
gi|332189840|gb|AEE27961.1| U5 small nuclear
ribonucleoprotein component [Arabidopsis thaliana]
gi|332189841|gb|AEE27962.1| U5 small nuclear
ribonucleoprotein component [Arabidopsis thaliana]
Length = 987
Score = 108 bits (270), Expect(2) = 6e-37
Identities = 54/64 (84%), Positives = 57/64 (89%)
Frame = +1
Query: 163 ILTA*RVAYSAFLMATPRLMEPVYYVEIQTHIDCVSANYTVLSHRRVHITSDVPQPSTPA 342
I TA RVAYSAFLMATPRLMEPVYYVEIQT IDCV+A YTVLS RR H+TSDVPQP TPA
Sbjct: 823 IPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSDVPQPGTPA 882
Query: 343 YIIK 354
YI+K
Sbjct: 883 YIVK 886
Score = 70.9 bits (172), Expect(2) = 6e-37
Identities = 38/69 (55%), Positives = 47/69 (68%), Gaps = 16/69 (23%)
Frame = +3
Query: 3 GPNILLDDYIPSDADKNLLNAVKNSNGQGTQWG---------PIRNVKFKI-------EP 134
GPNILLDD +P++ D+NL+ AVK+S QG QWG PIRNVKFKI EP
Sbjct: 755 GPNILLDDTLPTEVDRNLMMAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEP 814
Query: 135 IHRGTGQII 161
+HRG+GQ+I
Sbjct: 815 LHRGSGQMI 823
>ref|XP_002889592.1| hypothetical protein ARALYDRAFT_470642 [Arabidopsis lyrata subsp.
lyrata] gi|297335434|gb|EFH65851.1| hypothetical protein
ARALYDRAFT_470642 [Arabidopsis lyrata subsp. lyrata]
Length = 987
Score = 108 bits (270), Expect(2) = 6e-37
Identities = 54/64 (84%), Positives = 57/64 (89%)
Frame = +1
Query: 163 ILTA*RVAYSAFLMATPRLMEPVYYVEIQTHIDCVSANYTVLSHRRVHITSDVPQPSTPA 342
I TA RVAYSAFLMATPRLMEPVYYVEIQT IDCV+A YTVLS RR H+TSDVPQP TPA
Sbjct: 823 IPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSDVPQPGTPA 882
Query: 343 YIIK 354
YI+K
Sbjct: 883 YIVK 886
Score = 70.9 bits (172), Expect(2) = 6e-37
Identities = 38/69 (55%), Positives = 47/69 (68%), Gaps = 16/69 (23%)
Frame = +3
Query: 3 GPNILLDDYIPSDADKNLLNAVKNSNGQGTQWG---------PIRNVKFKI-------EP 134
GPNILLDD +P++ D+NL+ AVK+S QG QWG PIRNVKFKI EP
Sbjct: 755 GPNILLDDTLPTEVDRNLMMAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEP 814
Query: 135 IHRGTGQII 161
+HRG+GQ+I
Sbjct: 815 LHRGSGQMI 823