BLASTX nr result

ID: Papaver23_contig00022958 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver23_contig00022958
         (513 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267416.1| PREDICTED: pre-mRNA-processing factor 6-like...   177   6e-43
emb|CAN65423.1| hypothetical protein VITISV_024588 [Vitis vinifera]   177   6e-43
gb|AEY85031.1| putative pre-mRNA splicing factor [Camellia sinen...   175   4e-42
ref|XP_004140515.1| PREDICTED: pre-mRNA-processing factor 6-like...   162   3e-38
ref|XP_003540356.1| PREDICTED: pre-mRNA-processing factor 6-like...   147   1e-33

>ref|XP_002267416.1| PREDICTED: pre-mRNA-processing factor 6-like [Vitis vinifera]
          Length = 1023

 Score =  177 bits (450), Expect = 6e-43
 Identities = 88/138 (63%), Positives = 113/138 (81%), Gaps = 3/138 (2%)
 Frame = +3

Query: 54  IFLKTLENKTLALNLNPNSTSLETIQLTIEQKSGTPINLQRIFLSGRRLIGTQNSEKTLI 233
           +F+K+ +NKTL LNLNP +T+ ET++  IE++ G P++LQRIFL+ RRLIG +++   + 
Sbjct: 2   VFVKSFDNKTLILNLNPKATTFETLKHQIERELGIPLSLQRIFLNPRRLIGDESA--LIA 59

Query: 234 NLGIQSNSFLSLEIPLLGGMQAPVAPKPRLEFLSSKPPPNYVAGLGRGATGFTTRSDIGP 413
            LG++S+S L+L +PL GGMQAPV PKPRLEFL++KPPPNYVAGLGRGATGFTTRSDIGP
Sbjct: 60  ELGVRSDSALTLHLPLFGGMQAPVVPKPRLEFLNTKPPPNYVAGLGRGATGFTTRSDIGP 119

Query: 414 ARTAPDLP---GSTSGGA 458
           AR APDLP    +T GGA
Sbjct: 120 ARAAPDLPDRSATTIGGA 137


>emb|CAN65423.1| hypothetical protein VITISV_024588 [Vitis vinifera]
          Length = 1023

 Score =  177 bits (450), Expect = 6e-43
 Identities = 88/138 (63%), Positives = 113/138 (81%), Gaps = 3/138 (2%)
 Frame = +3

Query: 54  IFLKTLENKTLALNLNPNSTSLETIQLTIEQKSGTPINLQRIFLSGRRLIGTQNSEKTLI 233
           +F+K+ +NKTL LNLNP +T+ ET++  IE++ G P++LQRIFL+ RRLIG +++   + 
Sbjct: 2   VFVKSFDNKTLILNLNPKATTFETLKHQIERELGIPLSLQRIFLNPRRLIGDESA--LIA 59

Query: 234 NLGIQSNSFLSLEIPLLGGMQAPVAPKPRLEFLSSKPPPNYVAGLGRGATGFTTRSDIGP 413
            LG++S+S L+L +PL GGMQAPV PKPRLEFL++KPPPNYVAGLGRGATGFTTRSDIGP
Sbjct: 60  ELGVRSDSALTLHLPLFGGMQAPVVPKPRLEFLNTKPPPNYVAGLGRGATGFTTRSDIGP 119

Query: 414 ARTAPDLP---GSTSGGA 458
           AR APDLP    +T GGA
Sbjct: 120 ARAAPDLPDRSATTIGGA 137


>gb|AEY85031.1| putative pre-mRNA splicing factor [Camellia sinensis]
          Length = 1023

 Score =  175 bits (443), Expect = 4e-42
 Identities = 90/138 (65%), Positives = 108/138 (78%), Gaps = 3/138 (2%)
 Frame = +3

Query: 54  IFLKTLENKTLALNLNPNSTSLETIQLTIEQKSGTPINLQRIFLSGRRLIGTQNSEKTLI 233
           +FLK+ +NKTL L+L+P +TSL+ + L IE+KSG P+ LQR+FLS RRLIG   +  T+ 
Sbjct: 2   VFLKSPDNKTLTLHLDPTTTSLQALHLEIERKSGVPVTLQRLFLSSRRLIGGDGTA-TIS 60

Query: 234 NLGIQSNSFLSLEIPLLGGMQAPVAPKPRLEFLSSKPPPNYVAGLGRGATGFTTRSDIGP 413
             G+  NS L+L  PLLGGMQAPV PK RLEFL++KPPPNYVAGLGRGATGFTTRSDIGP
Sbjct: 61  AFGVGLNSTLTLYFPLLGGMQAPVVPKSRLEFLNTKPPPNYVAGLGRGATGFTTRSDIGP 120

Query: 414 ARTAPDLP---GSTSGGA 458
           AR APDLP    +T GGA
Sbjct: 121 ARAAPDLPDRSATTIGGA 138


>ref|XP_004140515.1| PREDICTED: pre-mRNA-processing factor 6-like [Cucumis sativus]
           gi|449514699|ref|XP_004164455.1| PREDICTED:
           pre-mRNA-processing factor 6-like [Cucumis sativus]
          Length = 1023

 Score =  162 bits (409), Expect = 3e-38
 Identities = 85/143 (59%), Positives = 100/143 (69%), Gaps = 3/143 (2%)
 Frame = +3

Query: 54  IFLKTLENKTLALNLNPNSTSLETIQLTIEQKSGTPINLQRIFLSGRRLIGTQNSEKTLI 233
           +FL     KTL LNLNP++TS+  ++  IE  S  PI+ QR+FLS    +   N    L 
Sbjct: 2   VFLSIPNQKTLFLNLNPSTTSILNLKRAIEDVSHIPISFQRLFLSQSFQLSHFNDSTLLS 61

Query: 234 NLGIQSNSFLSLEIPLLGGMQAPVAPKPRLEFLSSKPPPNYVAGLGRGATGFTTRSDIGP 413
           +L I  NS L+L +PL GGMQAP  PKPRL+FL+SKPPPNYVAGLGRGATGFTTRSDIGP
Sbjct: 62  HLRILPNSTLTLHVPLFGGMQAPTIPKPRLDFLNSKPPPNYVAGLGRGATGFTTRSDIGP 121

Query: 414 ARTAPDLP---GSTSGGAIGAPP 473
           AR APDLP    +T GGA  APP
Sbjct: 122 ARAAPDLPDRSATTIGGAAAAPP 144


>ref|XP_003540356.1| PREDICTED: pre-mRNA-processing factor 6-like [Glycine max]
          Length = 1041

 Score =  147 bits (370), Expect = 1e-33
 Identities = 77/145 (53%), Positives = 102/145 (70%), Gaps = 7/145 (4%)
 Frame = +3

Query: 54  IFLKTLENKTLALNLNPNSTSLETIQLTIEQKSGTPINLQRIFLSGRRLIGTQN--SEKT 227
           +F+ +  +KT +++LNPN+T+L  ++L I+Q    PI+ QR+FLS  R +   N  S+ +
Sbjct: 2   VFIVSPNHKTFSIDLNPNTTTLHLLKLAIQQTLTLPISHQRLFLSHSRRLTADNDGSDDS 61

Query: 228 LI--NLGIQSNSFLSLEIPLLGGMQAPVAPKPRLEFLSSKPPPNYVAGLGRGATGFTTRS 401
           L+  +LG+   S L+L +P LGG   P  PKPR +FL+SKPPPNYVAGLGRGATGFTTRS
Sbjct: 62  LLISDLGVGPYSTLTLHVPFLGGTNPPAVPKPRFDFLNSKPPPNYVAGLGRGATGFTTRS 121

Query: 402 DIGPARTAPDLP---GSTSGGAIGA 467
           DIGPAR APDLP    +T GG  GA
Sbjct: 122 DIGPARAAPDLPDRSATTIGGTSGA 146


Top