BLASTX nr result
ID: Papaver23_contig00022823
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver23_contig00022823
(1054 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276595.1| PREDICTED: mRNA turnover protein 4 homolog [... 45 6e-10
ref|XP_002317075.1| predicted protein [Populus trichocarpa] gi|2... 44 6e-10
ref|XP_002528622.1| mRNA turnover protein 4 mrt4, putative [Rici... 45 6e-09
ref|XP_002299012.1| predicted protein [Populus trichocarpa] gi|1... 39 1e-08
>ref|XP_002276595.1| PREDICTED: mRNA turnover protein 4 homolog [Vitis vinifera]
gi|298204604|emb|CBI23879.3| unnamed protein product
[Vitis vinifera]
Length = 229
Score = 45.1 bits (105), Expect(3) = 6e-10
Identities = 26/71 (36%), Positives = 40/71 (56%)
Frame = -3
Query: 428 PLPPLTNAVDLCPKLKGLGMPVELSGTGIKLTDAYSVCENGVRVAKNTAEILRLLEKRMF 249
PL T+ ++ P L+ GMPV L+ ++L + VCE G ++ +A ILRLL +M
Sbjct: 142 PLDQFTHEME--PFLRKQGMPVRLNKGVVELVSDFVVCEEGTPLSPESARILRLLGIKMA 199
Query: 248 IYVLLPLCCWS 216
+ L +C WS
Sbjct: 200 TFRLHLVCRWS 210
Score = 35.0 bits (79), Expect(3) = 6e-10
Identities = 27/87 (31%), Positives = 39/87 (44%)
Frame = -1
Query: 967 FSLSLMQNLKLPSTRISSKSLNDGNSYKVYFGRSMPLSKTVGLVSRDKKRSKHKELRTGL 788
FS M+NLK R KS + + + G + + +G RS E+R GL
Sbjct: 43 FSFENMRNLKFKEFREKLKSTS-----RFFLGSNKVMQIAIG-------RSVADEIRPGL 90
Query: 787 HAIGNMLAGYDDVGVLLTNKTKDEVLR 707
+ +L G D G+ TN K+EV R
Sbjct: 91 RKVSKLLHG--DTGLFFTNLPKEEVQR 115
Score = 30.0 bits (66), Expect(3) = 6e-10
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 618 RKFGEYKEYDFLKLGQTPMEAVR*K 544
R F EY+EYDF + G T +E V K
Sbjct: 115 RLFNEYEEYDFARTGSTAVEKVELK 139
>ref|XP_002317075.1| predicted protein [Populus trichocarpa] gi|222860140|gb|EEE97687.1|
predicted protein [Populus trichocarpa]
Length = 229
Score = 43.9 bits (102), Expect(3) = 6e-10
Identities = 26/71 (36%), Positives = 39/71 (54%)
Frame = -3
Query: 428 PLPPLTNAVDLCPKLKGLGMPVELSGTGIKLTDAYSVCENGVRVAKNTAEILRLLEKRMF 249
PL T+ ++ P L+ GMPV L+ I L + VCE G ++ ++ ILRLL +M
Sbjct: 142 PLEQFTHEME--PFLRKQGMPVRLNKGVIDLVSNFVVCEEGKPLSPESSRILRLLGTKMA 199
Query: 248 IYVLLPLCCWS 216
+ L +C WS
Sbjct: 200 TFRLHLICRWS 210
Score = 37.4 bits (85), Expect(3) = 6e-10
Identities = 27/87 (31%), Positives = 42/87 (48%)
Frame = -1
Query: 967 FSLSLMQNLKLPSTRISSKSLNDGNSYKVYFGRSMPLSKTVGLVSRDKKRSKHKELRTGL 788
FS M+NLK R K + + + G + + ++G RS E+R GL
Sbjct: 43 FSFENMRNLKFKEFREQHKLTS-----RFFLGSNKVMQVSLG-------RSAADEIRPGL 90
Query: 787 HAIGNMLAGYDDVGVLLTNKTKDEVLR 707
H + +L G D G+ LTN +++EV R
Sbjct: 91 HKVSKLLCG--DSGLFLTNLSREEVER 115
Score = 28.9 bits (63), Expect(3) = 6e-10
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 618 RKFGEYKEYDFLKLGQTPMEAVR*K 544
R F EY+EYDF + G T E V K
Sbjct: 115 RLFNEYEEYDFARTGTTATEMVELK 139
>ref|XP_002528622.1| mRNA turnover protein 4 mrt4, putative [Ricinus communis]
gi|223531967|gb|EEF33780.1| mRNA turnover protein 4
mrt4, putative [Ricinus communis]
Length = 182
Score = 45.4 bits (106), Expect(3) = 6e-09
Identities = 26/71 (36%), Positives = 40/71 (56%)
Frame = -3
Query: 428 PLPPLTNAVDLCPKLKGLGMPVELSGTGIKLTDAYSVCENGVRVAKNTAEILRLLEKRMF 249
PL T+ ++ P L+ GMPV L+ ++L + VCE G ++ +A ILRLL +M
Sbjct: 95 PLEQFTHEME--PFLRKQGMPVRLNKGVVELVSDFVVCEEGKHLSPESARILRLLGIKMA 152
Query: 248 IYVLLPLCCWS 216
+ L +C WS
Sbjct: 153 TFRLHLICRWS 163
Score = 34.3 bits (77), Expect(3) = 6e-09
Identities = 25/82 (30%), Positives = 39/82 (47%)
Frame = -1
Query: 952 MQNLKLPSTRISSKSLNDGNSYKVYFGRSMPLSKTVGLVSRDKKRSKHKELRTGLHAIGN 773
M+NLK R K+ S + + G + + ++G D E+R G+H +
Sbjct: 1 MRNLKFKEFREQLKT-----SSRFFLGSNKVMQVSLGRTVAD-------EVRPGIHKVSK 48
Query: 772 MLAGYDDVGVLLTNKTKDEVLR 707
+L G D G+ LTN K+EV R
Sbjct: 49 LLRG--DAGLFLTNLPKEEVER 68
Score = 26.9 bits (58), Expect(3) = 6e-09
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 618 RKFGEYKEYDFLKLGQTPMEAVR*K 544
R F EY+EYDF + G E V K
Sbjct: 68 RLFNEYEEYDFARTGSIATEKVELK 92
>ref|XP_002299012.1| predicted protein [Populus trichocarpa] gi|118486150|gb|ABK94918.1|
unknown [Populus trichocarpa]
gi|222846270|gb|EEE83817.1| predicted protein [Populus
trichocarpa]
Length = 229
Score = 39.3 bits (90), Expect(3) = 1e-08
Identities = 25/71 (35%), Positives = 37/71 (52%)
Frame = -3
Query: 428 PLPPLTNAVDLCPKLKGLGMPVELSGTGIKLTDAYSVCENGVRVAKNTAEILRLLEKRMF 249
PL T+ ++ P L+ GMPV L+ I+L + V E G ++ A ILRLL +
Sbjct: 142 PLEQFTHEME--PFLRKQGMPVRLNKGVIELVSDFVVSEEGKPLSPECARILRLLGTKTA 199
Query: 248 IYVLLPLCCWS 216
+ L +C WS
Sbjct: 200 TFKLHLICRWS 210
Score = 37.4 bits (85), Expect(3) = 1e-08
Identities = 27/87 (31%), Positives = 41/87 (47%)
Frame = -1
Query: 967 FSLSLMQNLKLPSTRISSKSLNDGNSYKVYFGRSMPLSKTVGLVSRDKKRSKHKELRTGL 788
FS M+NLK R K + + + G + + ++G RS E+R GL
Sbjct: 43 FSFENMRNLKFKEFREQHKLTS-----RFFLGSNKVMQVSLG-------RSAADEIRPGL 90
Query: 787 HAIGNMLAGYDDVGVLLTNKTKDEVLR 707
H + +L G D G+ LTN ++EV R
Sbjct: 91 HKVSKLLCG--DAGLFLTNLPREEVER 115
Score = 29.3 bits (64), Expect(3) = 1e-08
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 618 RKFGEYKEYDFLKLGQTPMEAVR*K 544
R F EY+EYDF + G T E V K
Sbjct: 115 RLFNEYEEYDFARTGTTATETVELK 139