BLASTX nr result

ID: Papaver23_contig00018002 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver23_contig00018002
         (783 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272597.2| PREDICTED: double-stranded RNA-binding prote...   114   2e-23
ref|XP_002302963.1| predicted protein [Populus trichocarpa] gi|2...    88   2e-15
ref|XP_002532469.1| double-stranded RNA binding protein, putativ...    85   2e-14
ref|XP_003572154.1| PREDICTED: double-stranded RNA-binding prote...    80   5e-13
ref|XP_003544264.1| PREDICTED: uncharacterized protein LOC100798...    77   6e-12

>ref|XP_002272597.2| PREDICTED: double-stranded RNA-binding protein 4-like [Vitis
           vinifera] gi|296087161|emb|CBI33535.3| unnamed protein
           product [Vitis vinifera]
          Length = 333

 Score =  114 bits (286), Expect = 2e-23
 Identities = 85/194 (43%), Positives = 103/194 (53%), Gaps = 11/194 (5%)
 Frame = +2

Query: 74  RKDTLSYKSILNEYAVKMNHPVPAYTTTQAEPH-SFFISSLVFNGKTYTGPAARNKKDAE 250
           R+DT+  KSILNE+AVKMN   P YTT Q E     F+SSLVFNG TYTG A RNKK+AE
Sbjct: 102 REDTVFCKSILNEFAVKMNLEKPTYTTVQPEGLLPVFVSSLVFNGVTYTGDAGRNKKEAE 161

Query: 251 RLAARMVIHSITGTSDPGTCLPEIIISKSRLSNASRMLEESQTIQDSHTAMVATPG-SNC 427
           +LAAR VI SI G S  GT L EII SK +L  A   +++   I      +  T G   C
Sbjct: 162 QLAARTVILSILGNSGSGTLLSEIIKSKVKLYAALHRVKDPSYIHTGILPIGLTSGIPPC 221

Query: 428 GGSTRK----RKQILN-----PSSQTFVEGVTSTPPPSEYKKHKVENSCETDAGPIRNVA 580
            G   +      Q+L      P S   V    + PP  E +K K   S E  A PI  V 
Sbjct: 222 KGKEVEVAPGTDQLLPTAVSVPLSGQLVHVPVTHPPVHELEKPKPNVSSEVIAPPISFVP 281

Query: 581 HLLDQPVSVSEHCG 622
            + +QP+ VS   G
Sbjct: 282 SVFEQPLVVSPTTG 295


>ref|XP_002302963.1| predicted protein [Populus trichocarpa] gi|222844689|gb|EEE82236.1|
           predicted protein [Populus trichocarpa]
          Length = 452

 Score = 88.2 bits (217), Expect = 2e-15
 Identities = 57/126 (45%), Positives = 76/126 (60%), Gaps = 1/126 (0%)
 Frame = +2

Query: 80  DTLSYKSILNEYAVKMNHPVPAYTTTQAEPH-SFFISSLVFNGKTYTGPAARNKKDAERL 256
           DT+  KSILNE+AVK+N   P Y T Q+      FIS+LVF+G +YTG A RNKK+AE+L
Sbjct: 221 DTVFCKSILNEFAVKVNREKPTYNTVQSPGLLPVFISTLVFDGVSYTGDAGRNKKEAEQL 280

Query: 257 AARMVIHSITGTSDPGTCLPEIIISKSRLSNASRMLEESQTIQDSHTAMVATPGSNCGGS 436
           AAR VI S+ G S     L EII SKS+L  A   +++    Q  +   VA    +C  +
Sbjct: 281 AARAVILSLIGNSGSSKILYEIIKSKSKLYAALDRVKDPSHSQ-PNIVPVAVKVGHCSET 339

Query: 437 TRKRKQ 454
           T  ++Q
Sbjct: 340 TVDQEQ 345


>ref|XP_002532469.1| double-stranded RNA binding protein, putative [Ricinus communis]
           gi|223527827|gb|EEF29925.1| double-stranded RNA binding
           protein, putative [Ricinus communis]
          Length = 289

 Score = 84.7 bits (208), Expect = 2e-14
 Identities = 64/184 (34%), Positives = 90/184 (48%), Gaps = 2/184 (1%)
 Frame = +2

Query: 77  KDTLSYKSILNEYAVKMNHPVPAYTTT-QAEPHSFFISSLVFNGKTYTGPAARNKKDAER 253
           +DT++ KSILNEYAVKM   +P Y T  Q      F+SS VFNG TY G   R KK+AE+
Sbjct: 96  EDTVACKSILNEYAVKMQLEMPTYNTVKQGGLFPIFVSSSVFNGVTYNGDIGRTKKEAEQ 155

Query: 254 LAARMVIHSITGTSDPGTCLPEIIISKSRLSNASRMLEESQTIQDSHTAMVATPGSNCGG 433
           LAAR  + S+    + G  + +   SK +L        +SQ  Q+S+  +V        G
Sbjct: 156 LAARAAVLSLLRNVESGEIISKFFKSKRKLYVGFHK-SDSQDAQNSNMPVV--------G 206

Query: 434 STRKRKQILNPSSQTFVEGVTST-PPPSEYKKHKVENSCETDAGPIRNVAHLLDQPVSVS 610
              K + ++  +     E  ++  PP  E+ K K E  CE    PI  V  +  Q V V+
Sbjct: 207 KDIKTEALMVSNVVPIPEAASALHPPHHEFTKTKPEKICEGIDLPIAFVHPVSGQSVDVA 266

Query: 611 EHCG 622
              G
Sbjct: 267 LESG 270


>ref|XP_003572154.1| PREDICTED: double-stranded RNA-binding protein 4-like [Brachypodium
           distachyon]
          Length = 281

 Score = 80.1 bits (196), Expect = 5e-13
 Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 3/95 (3%)
 Frame = +2

Query: 77  KDTLSYKSILNEYAVKMNHPVPAYTTTQAE---PHSFFISSLVFNGKTYTGPAARNKKDA 247
           +D L  KSILNE+AVK     P Y+  + +   P S F+SS+VF+GKTYTG AA +KKDA
Sbjct: 116 QDVLFCKSILNEFAVKTKATQPKYSVDRPQGVSPISLFVSSVVFDGKTYTGEAAVSKKDA 175

Query: 248 ERLAARMVIHSITGTSDPGTCLPEIIISKSRLSNA 352
           E+ AAR  + SI  T +  TC+ +II SK  L  A
Sbjct: 176 EQKAARAAVKSILATKN--TCMMQIIKSKENLITA 208


>ref|XP_003544264.1| PREDICTED: uncharacterized protein LOC100798730 [Glycine max]
          Length = 434

 Score = 76.6 bits (187), Expect = 6e-12
 Identities = 45/84 (53%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
 Frame = +2

Query: 95  KSILNEYAVKMNHPVPAYTTTQAEPHS---FFISSLVFNGKTYTGPAARNKKDAERLAAR 265
           KSI+NEYA K++   P Y T Q +       FI+SLVFNG +YTG  AR KK+AE+ AA+
Sbjct: 88  KSIMNEYADKLHVEQPTYNTDQQQLGGVLPIFITSLVFNGTSYTGDPARTKKEAEQSAAK 147

Query: 266 MVIHSITGTSDPGTCLPEIIISKS 337
             I SI G S  GT L EII SKS
Sbjct: 148 AAILSIMGDSSSGTVLVEIIKSKS 171


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