BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver23_contig00017730
         (600 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-...    67   4e-17
emb|CBI24961.3| unnamed protein product [Vitis vinifera]               67   4e-17
ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana] gi|752165...    55   3e-14
ref|XP_002873625.1| hypothetical protein ARALYDRAFT_909325 [Arab...    54   7e-14
ref|XP_004149725.1| PREDICTED: RNA polymerase sigma factor sigD,...    53   1e-12

>ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 426

 Score = 67.0 bits (162), Expect(2) = 4e-17
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = -3

Query: 586 LAETVGTDVSII*LASQSNRTPISLDQTPPTLHGCLTLKEIIPGPDETRPETIVIRQQMK 407
           +AE +  +VS + L S+ +RTPIS+DQ   T  GC+TL+EIIPGPDET P+ +V RQ MK
Sbjct: 297 IAEFIDVNVSTVRLVSERSRTPISVDQAV-TSQGCMTLQEIIPGPDETTPQKMVKRQLMK 355

Query: 406 Q 404
           Q
Sbjct: 356 Q 356



 Score = 46.2 bits (108), Expect(2) = 4e-17
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = -2

Query: 380 TLTGREEFFLYLHFGLNGDTPRSCDEIGRDLHLSRER 270
           TL  RE + L L+FG+NG+TP S +EIGR + LSRER
Sbjct: 364 TLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRER 400


>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
          Length = 319

 Score = 67.0 bits (162), Expect(2) = 4e-17
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = -3

Query: 586 LAETVGTDVSII*LASQSNRTPISLDQTPPTLHGCLTLKEIIPGPDETRPETIVIRQQMK 407
           +AE +  +VS + L S+ +RTPIS+DQ   T  GC+TL+EIIPGPDET P+ +V RQ MK
Sbjct: 190 IAEFIDVNVSTVRLVSERSRTPISVDQAV-TSQGCMTLQEIIPGPDETTPQKMVKRQLMK 248

Query: 406 Q 404
           Q
Sbjct: 249 Q 249



 Score = 46.2 bits (108), Expect(2) = 4e-17
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = -2

Query: 380 TLTGREEFFLYLHFGLNGDTPRSCDEIGRDLHLSRER 270
           TL  RE + L L+FG+NG+TP S +EIGR + LSRER
Sbjct: 257 TLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRER 293


>ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana]
           gi|75216509|sp|Q9ZSL6.1|SIGD_ARATH RecName: Full=RNA
           polymerase sigma factor sigD, chloroplastic; Short=Sigma
           factor D; Short=Sigma-D; AltName: Full=RNA polymerase
           sigma factor sig4; Short=Atsig4; Short=Sigma factor 4;
           Flags: Precursor gi|3983260|gb|AAC97954.1| sigma-like
           factor [Arabidopsis thaliana] gi|4972296|dbj|BAA78110.1|
           RNA polymerase sigma subunit SigD [Arabidopsis thaliana]
           gi|9758039|dbj|BAB08700.1| sigma-like factor
           [Arabidopsis thaliana] gi|332004550|gb|AED91933.1| sigma
           factor 4 [Arabidopsis thaliana]
          Length = 419

 Score = 55.1 bits (131), Expect(2) = 3e-14
 Identities = 28/60 (46%), Positives = 44/60 (73%)
 Frame = -3

Query: 586 LAETVGTDVSII*LASQSNRTPISLDQTPPTLHGCLTLKEIIPGPDETRPETIVIRQQMK 407
           +AE +  +VS + LA + +R+P+SLD+   + +G +TL+EI+ GPDETRPE +V R+ MK
Sbjct: 287 IAEHLNLNVSAVRLAVERSRSPVSLDRVA-SQNGRMTLQEIVRGPDETRPEEMVKREHMK 345



 Score = 48.5 bits (114), Expect(2) = 3e-14
 Identities = 25/42 (59%), Positives = 30/42 (71%)
 Frame = -2

Query: 395 ELLKTTLTGREEFFLYLHFGLNGDTPRSCDEIGRDLHLSRER 270
           E L  +LT RE   L L+FGLNG+TP S +EIG+ L LSRER
Sbjct: 349 EQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRER 390


>ref|XP_002873625.1| hypothetical protein ARALYDRAFT_909325 [Arabidopsis lyrata subsp.
           lyrata] gi|297319462|gb|EFH49884.1| hypothetical protein
           ARALYDRAFT_909325 [Arabidopsis lyrata subsp. lyrata]
          Length = 273

 Score = 53.9 bits (128), Expect(2) = 7e-14
 Identities = 28/60 (46%), Positives = 43/60 (71%)
 Frame = -3

Query: 586 LAETVGTDVSII*LASQSNRTPISLDQTPPTLHGCLTLKEIIPGPDETRPETIVIRQQMK 407
           +AE +   VS + LA + +R+P+SLD+   + +G +TL+EI+ GPDETRPE +V R+ MK
Sbjct: 141 IAEHLNLHVSAVRLAVERSRSPVSLDRVV-SQNGRMTLQEIVRGPDETRPEEMVKREHMK 199



 Score = 48.5 bits (114), Expect(2) = 7e-14
 Identities = 25/42 (59%), Positives = 30/42 (71%)
 Frame = -2

Query: 395 ELLKTTLTGREEFFLYLHFGLNGDTPRSCDEIGRDLHLSRER 270
           E L  +LT RE   L L+FGLNG+TP S +EIG+ L LSRER
Sbjct: 203 EQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRER 244


>ref|XP_004149725.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Cucumis sativus]
          Length = 436

 Score = 53.1 bits (126), Expect(2) = 1e-12
 Identities = 27/63 (42%), Positives = 42/63 (66%)
 Frame = -3

Query: 592 RTLAETVGTDVSII*LASQSNRTPISLDQTPPTLHGCLTLKEIIPGPDETRPETIVIRQQ 413
           + +AE++   +S I L  + ++ PIS++Q P     CLTL+EI+PGPD   PE +V+R+ 
Sbjct: 305 KEVAESLKVHLSTIRLVMERSKRPISINQ-PVNDRSCLTLQEIMPGPDNLTPENMVMRKL 363

Query: 412 MKQ 404
           MKQ
Sbjct: 364 MKQ 366



 Score = 45.1 bits (105), Expect(2) = 1e-12
 Identities = 22/39 (56%), Positives = 29/39 (74%)
 Frame = -2

Query: 389 LKTTLTGREEFFLYLHFGLNGDTPRSCDEIGRDLHLSRE 273
           L  TL+ RE   L L+FGLNG+ P+S +EIG+ L+LSRE
Sbjct: 371 LLNTLSKREARILSLYFGLNGEIPQSFEEIGKSLNLSRE 409