BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver23_contig00017729
         (627 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24961.3| unnamed protein product [Vitis vinifera]              160   1e-37
ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-...   160   1e-37
ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana] gi|752165...   138   9e-31
ref|XP_002873625.1| hypothetical protein ARALYDRAFT_909325 [Arab...   137   2e-30
ref|XP_003599429.1| RNA polymerase sigma factor rpoD [Medicago t...   130   2e-28

>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
          Length = 319

 Score =  160 bits (406), Expect = 1e-37
 Identities = 85/161 (52%), Positives = 112/161 (69%)
 Frame = +2

Query: 2   GSMCEMVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPT 181
           GS+CEMVAKIA+  T L+ +L R PTY+EIA+   ++VS +RL S+ +RTPIS+DQ   T
Sbjct: 161 GSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQA-VT 219

Query: 182 LHGCVTLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXXFVLYLHFGLNGDTPK 361
             GC+TL+EIIPGPDET P+ MV+RQ MKQ               ++L L+FG+NG+TP 
Sbjct: 220 SQGCMTLQEIIPGPDETTPQKMVKRQLMKQE-VERALNTLCEREAYILRLYFGINGETPL 278

Query: 362 SCDEIGRVLHLSRERVRQIRGSALAKLRDASATDNLGVYAL 484
           S +EIGR++ LSRERVRQI   AL+KLR  S  D L +Y +
Sbjct: 279 SFEEIGRLMKLSRERVRQINSIALSKLRQTSVVDYLKLYMM 319


>ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 426

 Score =  160 bits (406), Expect = 1e-37
 Identities = 85/161 (52%), Positives = 112/161 (69%)
 Frame = +2

Query: 2   GSMCEMVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPT 181
           GS+CEMVAKIA+  T L+ +L R PTY+EIA+   ++VS +RL S+ +RTPIS+DQ   T
Sbjct: 268 GSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQA-VT 326

Query: 182 LHGCVTLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXXFVLYLHFGLNGDTPK 361
             GC+TL+EIIPGPDET P+ MV+RQ MKQ               ++L L+FG+NG+TP 
Sbjct: 327 SQGCMTLQEIIPGPDETTPQKMVKRQLMKQE-VERALNTLCEREAYILRLYFGINGETPL 385

Query: 362 SCDEIGRVLHLSRERVRQIRGSALAKLRDASATDNLGVYAL 484
           S +EIGR++ LSRERVRQI   AL+KLR  S  D L +Y +
Sbjct: 386 SFEEIGRLMKLSRERVRQINSIALSKLRQTSVVDYLKLYMM 426


>ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana]
           gi|75216509|sp|Q9ZSL6.1|SIGD_ARATH RecName: Full=RNA
           polymerase sigma factor sigD, chloroplastic; Short=Sigma
           factor D; Short=Sigma-D; AltName: Full=RNA polymerase
           sigma factor sig4; Short=Atsig4; Short=Sigma factor 4;
           Flags: Precursor gi|3983260|gb|AAC97954.1| sigma-like
           factor [Arabidopsis thaliana] gi|4972296|dbj|BAA78110.1|
           RNA polymerase sigma subunit SigD [Arabidopsis thaliana]
           gi|9758039|dbj|BAB08700.1| sigma-like factor
           [Arabidopsis thaliana] gi|332004550|gb|AED91933.1| sigma
           factor 4 [Arabidopsis thaliana]
          Length = 419

 Score =  138 bits (347), Expect = 9e-31
 Identities = 77/159 (48%), Positives = 106/159 (66%)
 Frame = +2

Query: 2   GSMCEMVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPT 181
           GSM E+ AK+A+ +  LT KL R P+ EEIA+   ++VS +RLA + +R+P+SLD+   +
Sbjct: 258 GSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVA-S 316

Query: 182 LHGCVTLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXXFVLYLHFGLNGDTPK 361
            +G +TL+EI+ GPDETRPE MV+R+ MK                 VL L+FGLNG+TP 
Sbjct: 317 QNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESR-VLGLYFGLNGETPM 375

Query: 362 SCDEIGRVLHLSRERVRQIRGSALAKLRDASATDNLGVY 478
           S +EIG+ L LSRERVRQI G AL KLR+    ++L +Y
Sbjct: 376 SFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414


>ref|XP_002873625.1| hypothetical protein ARALYDRAFT_909325 [Arabidopsis lyrata subsp.
           lyrata] gi|297319462|gb|EFH49884.1| hypothetical protein
           ARALYDRAFT_909325 [Arabidopsis lyrata subsp. lyrata]
          Length = 273

 Score =  137 bits (344), Expect = 2e-30
 Identities = 77/159 (48%), Positives = 105/159 (66%)
 Frame = +2

Query: 2   GSMCEMVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPT 181
           GSM E+ AK+A+ +  LT KL R P+ EEIA+   + VS +RLA + +R+P+SLD+   +
Sbjct: 112 GSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLHVSAVRLAVERSRSPVSLDRVV-S 170

Query: 182 LHGCVTLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXXFVLYLHFGLNGDTPK 361
            +G +TL+EI+ GPDETRPE MV+R+ MK                 VL L+FGLNG+TP 
Sbjct: 171 QNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESR-VLGLYFGLNGETPM 229

Query: 362 SCDEIGRVLHLSRERVRQIRGSALAKLRDASATDNLGVY 478
           S +EIG+ L LSRERVRQI G AL KLR+    ++L +Y
Sbjct: 230 SFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 268


>ref|XP_003599429.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
           gi|355488477|gb|AES69680.1| RNA polymerase sigma factor
           rpoD [Medicago truncatula]
          Length = 185

 Score =  130 bits (327), Expect = 2e-28
 Identities = 77/161 (47%), Positives = 99/161 (61%)
 Frame = +2

Query: 2   GSMCEMVAKIAKTNTALTSKLGRWPTYEEIADTAGIDVSVIRLASQSNRTPISLDQTPPT 181
           G    MVAKIA+ N  L  +L R PTY EIA+   ++VS ++L S+ +R PISLD++  T
Sbjct: 27  GEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSI-T 85

Query: 182 LHGCVTLKEIIPGPDETRPETMVRRQQMKQNXXXXXXXXXXXXXXFVLYLHFGLNGDTPK 361
               + LKEIIPGP E  PE MV RQ MKQ                V  L+FGLNG+TP 
Sbjct: 86  DQSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVR-LYFGLNGETPL 144

Query: 362 SCDEIGRVLHLSRERVRQIRGSALAKLRDASATDNLGVYAL 484
           S +EIG++L LSRER+RQI G AL+KLR  +  D+L  Y +
Sbjct: 145 SFEEIGKLLKLSRERIRQIHGIALSKLRQNTIVDSLKFYVV 185