BLASTX nr result

ID: Papaver23_contig00017493 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver23_contig00017493
         (421 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI39650.3| unnamed protein product [Vitis vinifera]               67   2e-09
ref|XP_002512565.1| FACT complex subunit SPT16, putative [Ricinu...    65   8e-09
ref|XP_002276824.2| PREDICTED: FACT complex subunit SPT16-like [...    64   2e-08
emb|CBI39651.3| unnamed protein product [Vitis vinifera]               62   4e-08
ref|XP_002280582.1| PREDICTED: FACT complex subunit SPT16-like [...    60   2e-07

>emb|CBI39650.3| unnamed protein product [Vitis vinifera]
          Length = 721

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 47/141 (33%), Positives = 73/141 (51%), Gaps = 2/141 (1%)
 Frame = +1

Query: 4   NGFYYATASPYFCFSFLYTDLQKVFFRVGDEKMSPLLHFHYHDCITVGTETRQNIQFRLV 183
           NGF Y+T+ P      +Y +++  FF+  +++M  LLHFH H+ I VG +  +++QF  V
Sbjct: 420 NGFRYSTSRPDERVDIMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQF-FV 478

Query: 184 QTPVRQKRSYNDLYKINEDLKNFVHNVQEKWRGVPVVHYSPFVDAEVRKADEFQGNH--P 357
           +   R +++     KIN D +NFV+ V + W G P       +D E  +     G H  P
Sbjct: 479 EVMDRDRKN-----KINMDFQNFVNRVNDLW-GQP---QFKGLDLEFDQPLRELGFHGVP 529

Query: 358 SKAPTFFGLTLFSLVGLVDEP 420
            KA  F   T   LV L++ P
Sbjct: 530 HKASAFIVPTSSCLVELIETP 550


>ref|XP_002512565.1| FACT complex subunit SPT16, putative [Ricinus communis]
            gi|223548526|gb|EEF50017.1| FACT complex subunit SPT16,
            putative [Ricinus communis]
          Length = 1098

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 20/159 (12%)
 Frame = +1

Query: 4    NGFYYATASPYFCFSFLYTDLQKVFFRVGDEKMSPLLHFHYHDCITVGTETRQNIQF--- 174
            NG  Y+T+ P      +Y++++  FF+  D++M  LLHFH H+ I VG +  +++QF   
Sbjct: 703  NGLRYSTSRPDERIDVMYSNIKHAFFQPADKEMITLLHFHLHNHIMVGNKKTKDVQFFIE 762

Query: 175  --RLVQTPVRQKRSYND-------------LYKINEDLKNFVHNVQEKWRGVPVVHYSPF 309
               +VQT    KRS  D               KIN D +NFV+ V + W G P       
Sbjct: 763  VMDIVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQNFVNRVNDVW-GQPQFR---G 818

Query: 310  VDAEVRKADEFQGNH--PSKAPTFFGLTLFSLVGLVDEP 420
            +D E  +     G H  P KA  F   T   LV L++ P
Sbjct: 819  LDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETP 857


>ref|XP_002276824.2| PREDICTED: FACT complex subunit SPT16-like [Vitis vinifera]
          Length = 1071

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 20/159 (12%)
 Frame = +1

Query: 4    NGFYYATASPYFCFSFLYTDLQKVFFRVGDEKMSPLLHFHYHDCITVGTETRQNIQF--- 174
            NGF Y+T+ P      +Y +++  FF+  +++M  LLHFH H+ I VG +  +++QF   
Sbjct: 706  NGFRYSTSRPDERVDIMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFFVE 765

Query: 175  --RLVQTPVRQKRSYND-------------LYKINEDLKNFVHNVQEKWRGVPVVHYSPF 309
               +VQT    KRS  D               KIN D +NFV+ V + W G P       
Sbjct: 766  VMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQNFVNRVNDLW-GQP---QFKG 821

Query: 310  VDAEVRKADEFQGNH--PSKAPTFFGLTLFSLVGLVDEP 420
            +D E  +     G H  P KA  F   T   LV L++ P
Sbjct: 822  LDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETP 860


>emb|CBI39651.3| unnamed protein product [Vitis vinifera]
          Length = 977

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 2/141 (1%)
 Frame = +1

Query: 4   NGFYYATASPYFCFSFLYTDLQKVFFRVGDEKMSPLLHFHYHDCITVGTETRQNIQFRLV 183
           NGF Y+T+ P      +Y +++  FF+  + +M  L+HFH H+ I VGT+  +++QF  V
Sbjct: 588 NGFRYSTSRPDERVDIMYGNIKHAFFQPVENEMITLIHFHLHNHIMVGTKKTKDVQF-YV 646

Query: 184 QTPVRQKRSYNDLYKINEDLKNFVHNVQEKWRGVPVVHYSPFVDAEVRKADEFQGNH--P 357
           +   R +++     K+N D ++FV+ V + W G P   +S  +D E  +     G H  P
Sbjct: 647 EVMDRDRKN-----KVNMDFQSFVNRVNDLW-GQP--QFSG-LDLEFDQPLRELGFHGVP 697

Query: 358 SKAPTFFGLTLFSLVGLVDEP 420
            K+  F   T   LV L++ P
Sbjct: 698 YKSSAFIVPTSSCLVELIETP 718


>ref|XP_002280582.1| PREDICTED: FACT complex subunit SPT16-like [Vitis vinifera]
          Length = 1083

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 20/159 (12%)
 Frame = +1

Query: 4    NGFYYATASPYFCFSFLYTDLQKVFFRVGDEKMSPLLHFHYHDCITVGTETRQNIQF--- 174
            NGF Y+T+ P      +Y +++  FF+  + +M  L+HFH H+ I VGT+  +++QF   
Sbjct: 701  NGFRYSTSRPDERVDIMYGNIKHAFFQPVENEMITLIHFHLHNHIMVGTKKTKDVQFYVE 760

Query: 175  --RLVQTPVRQKRSYND-------------LYKINEDLKNFVHNVQEKWRGVPVVHYSPF 309
               +VQT    KRS  D               K+N D ++FV+ V + W G P   +S  
Sbjct: 761  VMDVVQTLGSGKRSAYDPDEIEEEQRERDRKNKVNMDFQSFVNRVNDLW-GQP--QFSG- 816

Query: 310  VDAEVRKADEFQGNH--PSKAPTFFGLTLFSLVGLVDEP 420
            +D E  +     G H  P K+  F   T   LV L++ P
Sbjct: 817  LDLEFDQPLRELGFHGVPYKSSAFIVPTSSCLVELIETP 855


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