BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver23_contig00015623
         (3535 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004136549.1| PREDICTED: pre-mRNA-splicing factor RSE1-lik...   849   0.0  
ref|XP_002882757.1| predicted protein [Arabidopsis lyrata subsp....   791   0.0  
ref|NP_187802.2| Cleavage and polyadenylation specificity factor...   786   0.0  
ref|NP_850565.1| Cleavage and polyadenylation specificity factor...   784   0.0  
gb|AAF23212.1|AC016795_25 hypothetical protein [Arabidopsis thal...   741   0.0  

>ref|XP_004136549.1| PREDICTED: pre-mRNA-splicing factor RSE1-like [Cucumis sativus]
          Length = 1376

 Score =  849 bits (2194), Expect(2) = 0.0
 Identities = 447/740 (60%), Positives = 551/740 (74%), Gaps = 20/740 (2%)
 Frame = +3

Query: 1080 IYEMQHVRLQNEVSSISIPQR-ISKYKSSTSVVSLPNISKPCFGLPIGVEISDTFVIGTH 1256
            IYE Q++RLQ E+S ISIP++  +K +S+  + S+ N       L   V      VIGTH
Sbjct: 647  IYEKQYLRLQYELSCISIPEKHFAKKESNFPMNSVENSIMST--LLNEVSCDTIIVIGTH 704

Query: 1257 RPSVEILSFVPEEGLRIVACGIISLSNTLGTAISGCVPQDVRLVLVDRFYVLSGLRNGML 1436
            RPSVEILSFVP  GL ++A G ISL N LG A+SGC+PQDVRLVLVDRFYVL+GLRNGML
Sbjct: 705  RPSVEILSFVPSIGLTVLASGTISLMNILGNAVSGCIPQDVRLVLVDRFYVLTGLRNGML 764

Query: 1437 LRFEWPNMXXXXXXXXXXXXXXFMISNMAASFVSPSSSNEQCRDSNILEKAE-KTPIHLE 1613
            LRFEWP+               F++S          S +++  +++ILEK E + P  L+
Sbjct: 765  LRFEWPHTATMNSSDMPHTVVPFLLS-------CSDSFSKEFHNADILEKHEDEIPSCLQ 817

Query: 1614 LIAIRRIGVTPVFLVPLCXXXXXXXXXXXXRPWLLQTARHSLSFTSISFQPATHVTPVCS 1793
            LIAIRRIG+TPVFLVPL             RPWLL +ARHSLS+TSISFQP+THVTPVCS
Sbjct: 818  LIAIRRIGITPVFLVPLTDRLDSDIIALSDRPWLLHSARHSLSYTSISFQPSTHVTPVCS 877

Query: 1794 MDCPKGILFVAENRLHLVEMVHSKRLNVQKFSLGGTPRKVVYHSESRLLLVMRTELSGES 1973
             DCP G+LFVAE+ LHLVEMVH+KRLNVQKF LGGTPRKV+YHSES+LLLVMRT+L  ++
Sbjct: 878  ADCPSGLLFVAESSLHLVEMVHTKRLNVQKFHLGGTPRKVLYHSESKLLLVMRTQLINDT 937

Query: 1974 CSSDICCVDPLSGSLLSSFKLEPGETGKSMQLVKVGDERVLVVGTNRFGGRAIMHTGEAE 2153
             SSDICCVDPLSGS+LSS KLE GETGKSM+LV+ G+E+VLVVGT+   G AIM +GEAE
Sbjct: 938  SSSDICCVDPLSGSILSSHKLEIGETGKSMELVRNGNEQVLVVGTSLSSGPAIMASGEAE 997

Query: 2154 SSKGRLLVLCLEHTLNSVNSS----------------FREIVGYATEQXXXXXXXXXPED 2285
            S+KGRL+VLCLEH  NS   S                FREIVGYATEQ         P+D
Sbjct: 998  STKGRLIVLCLEHVQNSDTGSMTFCSKAGLSSLQASPFREIVGYATEQLSSSSLCSSPDD 1057

Query: 2286 NGFEGVKLEETEVWQLVLAYQTIIPGVVLAVCPYLDRYFLASAGNFFYLYGFVNENPQRV 2465
               +G+KLEETE WQL + Y T +PG+VLA+CPYLDRYFLASAGN FY+ GF N++ QRV
Sbjct: 1058 ASSDGIKLEETEAWQLRVVYSTSLPGMVLAICPYLDRYFLASAGNAFYVCGFPNDSFQRV 1117

Query: 2466 RRLAYARTRFTITSLASDFTRIVVGDCRDGVLFYSYDEEPRRLKQLYCDPVQRLVADCTL 2645
            +R A  RTRF ITSL +   RI VGDCRDG+LF+SY E+ ++L+Q+Y DP QRLVADCTL
Sbjct: 1118 KRFAVGRTRFMITSLTAHVNRIAVGDCRDGILFFSYQEDAKKLEQIYSDPSQRLVADCTL 1177

Query: 2646 MDMDTAVVSDRKGNLTVLSCPNRVEDNASPECNLTLSCSYYIGETAMSIRKGSYSYKLPV 2825
            +D+DTAVVSDRKG++ +LSC +R+EDNASPECNLTL+C+YY+GE AM++RKGS+SYKLP 
Sbjct: 1178 LDVDTAVVSDRKGSIAILSCSDRLEDNASPECNLTLNCAYYMGEIAMTLRKGSFSYKLPA 1237

Query: 2826 DDTPNGCDIADTILNSSHNSIVASTMLGSVVVFIAISREEFELLKAVQARLIIHPLTAPI 3005
            DD   GC +  +  +SSHN+I+AST+LGS+V+F  +SR+E+ELL+AVQA+L +HPLT+PI
Sbjct: 1238 DDLLRGCAVPGSDFDSSHNTIIASTLLGSIVIFTPLSRDEYELLEAVQAKLAVHPLTSPI 1297

Query: 3006 LGNDHNEFRGRGSAAGVSKMLDGDMLTQFLELTSSQQESVLAVPLGLKET--GASISMPP 3179
            LGNDH E+R R +  GV K+LDGD+LTQFLELTS QQE VL+  +G       +S SMP 
Sbjct: 1298 LGNDHYEYRSRENPIGVPKILDGDILTQFLELTSMQQELVLSSSVGSLSAVKPSSKSMP- 1356

Query: 3180 SHKSISVNQVVRLLERVHYA 3239
               SI +NQVV+LLER+HYA
Sbjct: 1357 --ASIPINQVVQLLERIHYA 1374



 Score =  473 bits (1217), Expect(2) = 0.0
 Identities = 238/375 (63%), Positives = 289/375 (77%), Gaps = 16/375 (4%)
 Frame = +2

Query: 2    EVPYSYGFAVLFRVGDALLMDLSDPHNPRCVHKICLGLLP------------IEDGVDD- 142
            EVP SYGFA+LFRVGDALLMDL D H+P CV++I L   P            ++D  D+ 
Sbjct: 277  EVPQSYGFALLFRVGDALLMDLRDVHSPCCVYRIGLHFPPNVEQNFIEESYRVQDADDEG 336

Query: 143  --DVAVRALLELGMEMSKGDDPMIIDNENGQYNSLFKSMCSWSWEPGHNSNPTMFVSLDT 316
              +VA  ALLEL     +  DPM ID+++G  N+    +CSWSWEPG+N N  M   +DT
Sbjct: 337  LFNVAACALLEL-----RDYDPMCIDSDDGSLNTNQNHVCSWSWEPGNNRNRRMIFCMDT 391

Query: 317  GELLTLEISFESDGSKMNLSEPLYKCLPCKTLLWVKGDFVVALTEMGDGTVLKFEGGKLS 496
            G+L  +E++F+SDG K+N S  LYK  P K LLWV+G ++ AL EMGDG VLK E G+L 
Sbjct: 392  GDLFMIEMNFDSDGLKVNQSACLYKGQPYKALLWVEGGYLAALVEMGDGMVLKLENGRLI 451

Query: 497  YMSPVQNIAPVLD-SVVDYHDDKQDQMFACCGVAPEGSLRIIRSGISVENLLRTAPIYQG 673
            Y +P+QNIAP+LD SVVD HD+KQDQMFACCG+APEGSLRIIR+GISVENLLRT+PIYQG
Sbjct: 452  YANPIQNIAPILDMSVVDKHDEKQDQMFACCGMAPEGSLRIIRNGISVENLLRTSPIYQG 511

Query: 674  ITGTWTLRMKVLDSFDSFLVLSFVEETRVLSVGLSFSDVTDAVGFQPDACTLACGLVGDG 853
            IT  WT++MK  D++ S+LVLSFVEETRVLSVGLSF DVTD+VGFQ D CTLACGL+ DG
Sbjct: 512  ITSIWTIKMKRSDTYHSYLVLSFVEETRVLSVGLSFIDVTDSVGFQSDTCTLACGLLDDG 571

Query: 854  LLVQIHRNAVRLCLPTTIAHPEGIPLSAPICTSWFPENVNISLGAVGQNMIIVATSNPCF 1033
            L++QIH+NAVRLCLPT IAH EGI LS+P CTSWFP+N+ ISLGAVG N+I+V+TSNPCF
Sbjct: 572  LVIQIHQNAVRLCLPTKIAHSEGIELSSPACTSWFPDNIGISLGAVGHNVIVVSTSNPCF 631

Query: 1034 LFILGARSLSAYHYD 1078
            LFILG R +S Y Y+
Sbjct: 632  LFILGVRKVSGYDYE 646


>ref|XP_002882757.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
            gi|297328597|gb|EFH59016.1| predicted protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 1384

 Score =  791 bits (2044), Expect(2) = 0.0
 Identities = 424/754 (56%), Positives = 536/754 (71%), Gaps = 34/754 (4%)
 Frame = +3

Query: 1080 IYEMQHVRLQNEVSSISIPQR-ISKYKSSTSVVSLPNISKPCFGLPIGVEISDTFVIGTH 1256
            IYE+Q V LQ EVS IS+PQ+ I K +S  S  S  N  K    +P G+E   +F+IGTH
Sbjct: 654  IYEIQRVTLQYEVSCISVPQKHIGKKRSCAS--SPDNSCKAA--IPSGMEQGYSFLIGTH 709

Query: 1257 RPSVEILSFVPEE-GLRIVACGIISLSNTLGTAISGCVPQDVRLVLVDRFYVLSGLRNGM 1433
            +PSVE+LSF  +  G+R++A G++SL+NT+G  ISGC+PQDVRLVLVD+ YVLSGLRNGM
Sbjct: 710  KPSVEVLSFSEDGVGVRVLASGLVSLTNTMGAVISGCIPQDVRLVLVDQLYVLSGLRNGM 769

Query: 1434 LLRFEWPNMXXXXXXXXXXXXXXFMISNMAASFVSPSSSNEQCRDSN--ILEKAEKTPIH 1607
            LLRFEWP                 + SN  AS ++       C++    ++ K +  PI+
Sbjct: 770  LLRFEWP-----------------LFSN--ASGLNCPDYFSYCKEEMDIVVGKKDNLPIN 810

Query: 1608 LELIAIRRIGVTPVFLVPLCXXXXXXXXXXXXRPWLLQTARHSLSFTSISFQPATHVTPV 1787
            L LIA RRIG+TPVFLVP              RPWLLQTAR SLS+TSISFQP+TH TPV
Sbjct: 811  LLLIATRRIGITPVFLVPFSDSLDSDIIALSDRPWLLQTARQSLSYTSISFQPSTHATPV 870

Query: 1788 CSMDCPKGILFVAENRLHLVEMVHSKRLNVQKFSLGGTPRKVVYHSESRLLLVMRTELSG 1967
            CS +CP+GILFV+EN LHLVEMVHSKR N QKF LGGTPRKV+YHSES+LL+VMRT+L  
Sbjct: 871  CSSECPQGILFVSENCLHLVEMVHSKRRNAQKFHLGGTPRKVIYHSESKLLIVMRTDLY- 929

Query: 1968 ESCSSDICCVDPLSGSLLSSFKLEPGETGKSMQLVKVGDERVLVVGTNRFGGRAIMHTGE 2147
            ++C+SDICCVDPLSGS+LSS+KL+PGETGKSM+LV+VG+E VLVVGT+   G AI+ +GE
Sbjct: 930  DTCTSDICCVDPLSGSVLSSYKLKPGETGKSMELVRVGNEHVLVVGTSLSSGPAILPSGE 989

Query: 2148 AESSKGRLLVLCLEHTLNSVNSS----------------FREIVGYATEQXXXXXXXXXP 2279
            AES+KGRL++LCLEHT NS + S                FR++VGY TEQ         P
Sbjct: 990  AESTKGRLIILCLEHTQNSDSGSMTICSKAGSSSQRTSPFRDVVGYTTEQLSSSSHCSSP 1049

Query: 2280 EDNGFEGVKLEETEVWQLVLAYQTIIPGVVLAVCPYLDRYFLASAGNFFYLYGFVNENPQ 2459
            +DN ++G+K +E E WQL LA  T  PG+VLA+CPYLD YFLASAGN FY+ GF N++P+
Sbjct: 1050 DDNSYDGIKFDEAETWQLRLASATTWPGMVLAICPYLDHYFLASAGNAFYVCGFPNDSPE 1109

Query: 2460 RVRRLAYARTRFTITSLASDFTRIVVGDCRDGVLFYSYDEEPRRLKQLYCDPVQRLVADC 2639
            R++R A  RTRF ITSL + FTRIVVGDCRDGVLFYSY EE ++L Q+YCDP QRLVADC
Sbjct: 1110 RMKRFAVGRTRFMITSLRTYFTRIVVGDCRDGVLFYSYHEESKKLHQIYCDPAQRLVADC 1169

Query: 2640 TLMDMDTAVVSDRKGNLTVLSCPNRVE--------------DNASPECNLTLSCSYYIGE 2777
             LMD ++  VSDRKG++ +LSC +  E              + +SPE NL L+C+YY+GE
Sbjct: 1170 FLMDANSVAVSDRKGSIAILSCQDHSEFGTKHLAFSPRDDPEYSSPESNLNLNCAYYMGE 1229

Query: 2778 TAMSIRKGSYSYKLPVDDTPNGCDIADTILNSSHNSIVASTMLGSVVVFIAISREEFELL 2957
             AM+I+KG   YKLP DD      ++ +I +++ ++I+A T+LGS+ VF  IS EE+ELL
Sbjct: 1230 IAMAIKKGCNIYKLPADDVLRSYGLSKSI-DTADDTIIAGTLLGSIFVFAPISSEEYELL 1288

Query: 2958 KAVQARLIIHPLTAPILGNDHNEFRGRGSAAGVSKMLDGDMLTQFLELTSSQQESVLAVP 3137
            +AVQA+L IHPLTAP+LGNDHNEFRGR + +  +K+LDGDML QFLELT+ QQESVL  P
Sbjct: 1289 EAVQAKLGIHPLTAPVLGNDHNEFRGRENPSQATKILDGDMLAQFLELTNRQQESVLLTP 1348

Query: 3138 LGLKETGASISMPPSHKSISVNQVVRLLERVHYA 3239
                 T  + S   S   + ++QVV+LLERVHYA
Sbjct: 1349 QPSPSTSKASSKQRSSPPLMLHQVVQLLERVHYA 1382



 Score =  440 bits (1132), Expect(2) = 0.0
 Identities = 224/372 (60%), Positives = 276/372 (74%), Gaps = 17/372 (4%)
 Frame = +2

Query: 2    EVPYSYGFAVLFRVGDALLMDLSDPHNPRCVHKICLGLLP--------------IEDGVD 139
            EVP+S GFA LFR+GDALLMDL DP NP C+ +  L L+P              ++DG D
Sbjct: 283  EVPHSSGFAFLFRIGDALLMDLRDPQNPCCLFRTSLDLVPASLVEEHFVEESCRVQDGDD 342

Query: 140  D--DVAVRALLELGMEMSKGDDPMIIDNENGQYNSLFKSMCSWSWEPGHNSNPTMFVSLD 313
            +  +VA  ALLEL        DPM ID E+       K + SW+WEP +N NP M + LD
Sbjct: 343  EGFNVAACALLELS-----DHDPMFIDTESDIGKLSSKHVSSWTWEPENNHNPRMIICLD 397

Query: 314  TGELLTLEISFESDGSKMNLSEPLYKCLPCKTLLWVKGDFVVALTEMGDGTVLKFEGGKL 493
             GE    E+ +E DG K+NLSE LYK LPCK +LWV+G F+    EM DGTV K    KL
Sbjct: 398  DGEFYMFELIYEDDGVKVNLSECLYKGLPCKEILWVEGGFLATFAEMADGTVFKLGSEKL 457

Query: 494  SYMSPVQNIAPVLD-SVVDYHDDKQDQMFACCGVAPEGSLRIIRSGISVENLLRTAPIYQ 670
             +MS +QNIAP+LD SV+D  ++K+DQ+FACCGV  EGSLRIIRSGI+VE LL+TAP+YQ
Sbjct: 458  HWMSSIQNIAPILDFSVMDDQNEKRDQIFACCGVTREGSLRIIRSGINVEKLLKTAPVYQ 517

Query: 671  GITGTWTLRMKVLDSFDSFLVLSFVEETRVLSVGLSFSDVTDAVGFQPDACTLACGLVGD 850
            GITGTWT++MK+ D + SFLVLSFVEETRVLSVGLSF DVTD+VGFQ D CTLACGLV D
Sbjct: 518  GITGTWTVKMKLTDVYHSFLVLSFVEETRVLSVGLSFKDVTDSVGFQSDVCTLACGLVAD 577

Query: 851  GLLVQIHRNAVRLCLPTTIAHPEGIPLSAPICTSWFPENVNISLGAVGQNMIIVATSNPC 1030
            GLLVQIH++A+RLC+PT  AH +GIP+S+P  +SWFP+NV+ISLGAVGQN+I+V+TSNPC
Sbjct: 578  GLLVQIHQDAIRLCMPTMDAHSDGIPVSSPFFSSWFPDNVSISLGAVGQNLIVVSTSNPC 637

Query: 1031 FLFILGARSLSA 1066
            FL ILG +S+S+
Sbjct: 638  FLSILGVKSVSS 649


>ref|NP_187802.2| Cleavage and polyadenylation specificity factor (CPSF) A subunit
            protein [Arabidopsis thaliana] gi|29824376|gb|AAP04148.1|
            unknown protein [Arabidopsis thaliana]
            gi|110739103|dbj|BAF01468.1| hypothetical protein
            [Arabidopsis thaliana] gi|332641608|gb|AEE75129.1|
            Cleavage and polyadenylation specificity factor (CPSF) A
            subunit protein [Arabidopsis thaliana]
          Length = 1379

 Score =  786 bits (2030), Expect(2) = 0.0
 Identities = 419/751 (55%), Positives = 530/751 (70%), Gaps = 31/751 (4%)
 Frame = +3

Query: 1080 IYEMQHVRLQNEVSSISIPQR-ISKYKSSTSVVSLPNISKPCFGLPIGVEISDTFVIGTH 1256
            IYE+Q V LQ EVS IS+PQ+ I K +S  S  S  N  K    +P  +E   TF+IGTH
Sbjct: 657  IYEIQRVTLQYEVSCISVPQKHIGKKRSRDS--SPDNFCKAA--IPSAMEQGYTFLIGTH 712

Query: 1257 RPSVEILSFVPEE-GLRIVACGIISLSNTLGTAISGCVPQDVRLVLVDRFYVLSGLRNGM 1433
            +PSVE+LSF  +  G+R++A G++SL+NT+GT ISGC+PQDVRLVLVD+ YVLSGLRNGM
Sbjct: 713  KPSVEVLSFTEDGVGVRVLASGLVSLTNTMGTVISGCIPQDVRLVLVDQLYVLSGLRNGM 772

Query: 1434 LLRFEWPNMXXXXXXXXXXXXXXFMISNMAASFVSPSSSN-----EQCRDS--NILEKAE 1592
            LLRFEW                        A F + S  N       C++    ++ K +
Sbjct: 773  LLRFEW------------------------APFSNSSGLNCPDYFSHCKEEMDTVVGKKD 808

Query: 1593 KTPIHLELIAIRRIGVTPVFLVPLCXXXXXXXXXXXXRPWLLQTARHSLSFTSISFQPAT 1772
              P++L LIA RRIG+TPVFLVP              RPWLLQTAR SLS+TSISFQP+T
Sbjct: 809  NLPVNLLLIATRRIGITPVFLVPFSDSLDSDIIALSDRPWLLQTARQSLSYTSISFQPST 868

Query: 1773 HVTPVCSMDCPKGILFVAENRLHLVEMVHSKRLNVQKFSLGGTPRKVVYHSESRLLLVMR 1952
            H TPVCS +CP+GILFV+EN LHLVEMVHSKR N QKF LGGTPRKV+YHSES+LL+VMR
Sbjct: 869  HATPVCSFECPQGILFVSENCLHLVEMVHSKRRNAQKFQLGGTPRKVIYHSESKLLIVMR 928

Query: 1953 TELSGESCSSDICCVDPLSGSLLSSFKLEPGETGKSMQLVKVGDERVLVVGTNRFGGRAI 2132
            T+L  ++C+SDICCVDPLSGS+LSS+KL+PGETGKSM+LV+VG+E VLVVGT+   G AI
Sbjct: 929  TDLY-DTCTSDICCVDPLSGSVLSSYKLKPGETGKSMELVRVGNEHVLVVGTSLSSGPAI 987

Query: 2133 MHTGEAESSKGRLLVLCLEHTLNSVNSS----------------FREIVGYATEQXXXXX 2264
            + +GEAES+KGR+++LCLEHT NS + S                F ++VGY TE      
Sbjct: 988  LPSGEAESTKGRVIILCLEHTQNSDSGSMTICSKACSSSQRTSPFHDVVGYTTENLSSSS 1047

Query: 2265 XXXXPEDNGFEGVKLEETEVWQLVLAYQTIIPGVVLAVCPYLDRYFLASAGNFFYLYGFV 2444
                P+D  ++G+KL+E E WQL LA  T  PG+VLA+CPYLD YFLASAGN FY+ GF 
Sbjct: 1048 LCSSPDDYSYDGIKLDEAETWQLRLASSTTWPGMVLAICPYLDHYFLASAGNAFYVCGFP 1107

Query: 2445 NENPQRVRRLAYARTRFTITSLASDFTRIVVGDCRDGVLFYSYDEEPRRLKQLYCDPVQR 2624
            N++P+R++R A  RTRF ITSL + FTRIVVGDCRDGVLFYSY EE ++L Q+YCDP QR
Sbjct: 1108 NDSPERMKRFAVGRTRFMITSLRTYFTRIVVGDCRDGVLFYSYHEESKKLHQIYCDPAQR 1167

Query: 2625 LVADCTLMDMDTAVVSDRKGNLTVLSCPNRVE------DNASPECNLTLSCSYYIGETAM 2786
            LVADC LMD ++  VSDRKG++ +LSC +  +      + +SPE NL L+C+YY+GE AM
Sbjct: 1168 LVADCFLMDANSVAVSDRKGSIAILSCKDHSDFGMKHLEYSSPESNLNLNCAYYMGEIAM 1227

Query: 2787 SIRKGSYSYKLPVDDTPNGCDIADTILNSSHNSIVASTMLGSVVVFIAISREEFELLKAV 2966
            SI+KG   YKLP DD      ++ +I +++ ++I+A T+LGS+ VF  IS EE+ELL+ V
Sbjct: 1228 SIKKGCNIYKLPADDVLRSYGLSKSI-DTADDTIIAGTLLGSIFVFAPISSEEYELLEGV 1286

Query: 2967 QARLIIHPLTAPILGNDHNEFRGRGSAAGVSKMLDGDMLTQFLELTSSQQESVLAVPLGL 3146
            QA+L IHPLTAP+LGNDHNEFRGR + +   K+LDGDML QFLELT+ QQESVL+ P   
Sbjct: 1287 QAKLGIHPLTAPVLGNDHNEFRGRENPSQARKILDGDMLAQFLELTNRQQESVLSTPQPS 1346

Query: 3147 KETGASISMPPSHKSISVNQVVRLLERVHYA 3239
              T  + S   S   + ++QVV+LLERVHYA
Sbjct: 1347 PSTSKASSKQRSFPPLMLHQVVQLLERVHYA 1377



 Score =  443 bits (1139), Expect(2) = 0.0
 Identities = 221/372 (59%), Positives = 276/372 (74%), Gaps = 17/372 (4%)
 Frame = +2

Query: 2    EVPYSYGFAVLFRVGDALLMDLSDPHNPRCVHKICLGLLP--------------IEDGVD 139
            EVP+S GFA LFR+GD LLMDL DP NP C+ +  L  +P              ++DG D
Sbjct: 281  EVPHSSGFAFLFRIGDVLLMDLRDPQNPCCLFRTSLDFVPASLMEEHFVEESCRVQDGDD 340

Query: 140  D--DVAVRALLELGMEMSKGDDPMIIDNENGQYNSLFKSMCSWSWEPGHNSNPTMFVSLD 313
            +  +V V ALLEL     +  DPM ID E+       K++ SW+WEP +N NP M + LD
Sbjct: 341  EGCNVVVCALLELRDHEVRDHDPMFIDTESDIGKLSSKNVSSWTWEPENNHNPRMIICLD 400

Query: 314  TGELLTLEISFESDGSKMNLSEPLYKCLPCKTLLWVKGDFVVALTEMGDGTVLKFEGGKL 493
             G+    E+ +E DG K+NLSE LYK LPCK +LW++G F+    EM DGTV K    KL
Sbjct: 401  NGDFFMFELIYEDDGVKVNLSECLYKGLPCKDILWIEGGFLATFAEMADGTVFKLGTEKL 460

Query: 494  SYMSPVQNIAPVLD-SVVDYHDDKQDQMFACCGVAPEGSLRIIRSGISVENLLRTAPIYQ 670
             +MS +QNIAP+LD SV+D  ++K+DQ+FACCGV PEGSLRIIRSGI+VE LL+TAP+YQ
Sbjct: 461  HWMSSIQNIAPILDFSVMDDQNEKRDQIFACCGVTPEGSLRIIRSGINVEKLLKTAPVYQ 520

Query: 671  GITGTWTLRMKVLDSFDSFLVLSFVEETRVLSVGLSFSDVTDAVGFQPDACTLACGLVGD 850
            GITGTWT++MK+ D + SFLVLSFVEETRVLSVGLSF DVTD+VGFQ D CT ACGLV D
Sbjct: 521  GITGTWTVKMKLTDVYHSFLVLSFVEETRVLSVGLSFKDVTDSVGFQSDVCTFACGLVAD 580

Query: 851  GLLVQIHRNAVRLCLPTTIAHPEGIPLSAPICTSWFPENVNISLGAVGQNMIIVATSNPC 1030
            GLLVQIH++A+RLC+PT  AH +GIP+S+P  +SWFPENV+ISLGAVGQN+I+V+TSNPC
Sbjct: 581  GLLVQIHQDAIRLCMPTMDAHSDGIPVSSPFFSSWFPENVSISLGAVGQNLIVVSTSNPC 640

Query: 1031 FLFILGARSLSA 1066
            FL ILG +S+S+
Sbjct: 641  FLSILGVKSVSS 652


>ref|NP_850565.1| Cleavage and polyadenylation specificity factor (CPSF) A subunit
            protein [Arabidopsis thaliana]
            gi|332641609|gb|AEE75130.1| Cleavage and polyadenylation
            specificity factor (CPSF) A subunit protein [Arabidopsis
            thaliana]
          Length = 1329

 Score =  784 bits (2024), Expect(2) = 0.0
 Identities = 420/759 (55%), Positives = 530/759 (69%), Gaps = 39/759 (5%)
 Frame = +3

Query: 1080 IYEMQHVRLQNEVSSISIPQR-ISKYKSSTSVVSLPNISKPCFGLPIGVEISDTFVIGTH 1256
            IYE+Q V LQ EVS IS+PQ+ I K +S  S  S  N  K    +P  +E   TF+IGTH
Sbjct: 599  IYEIQRVTLQYEVSCISVPQKHIGKKRSRDS--SPDNFCKAA--IPSAMEQGYTFLIGTH 654

Query: 1257 RPSVEILSFVPEE-GLRIVACGIISLSNTLGTAISGCVPQDVRLVLVDRFYVLSGLRNGM 1433
            +PSVE+LSF  +  G+R++A G++SL+NT+GT ISGC+PQDVRLVLVD+ YVLSGLRNGM
Sbjct: 655  KPSVEVLSFTEDGVGVRVLASGLVSLTNTMGTVISGCIPQDVRLVLVDQLYVLSGLRNGM 714

Query: 1434 LLRFEWPNMXXXXXXXXXXXXXXFMISNMAASFVSPSSSN-----EQCRDS--NILEKAE 1592
            LLRFEW                        A F + S  N       C++    ++ K +
Sbjct: 715  LLRFEW------------------------APFSNSSGLNCPDYFSHCKEEMDTVVGKKD 750

Query: 1593 KTPIHLELIAIRRIGVTPVFLVPLCXXXXXXXXXXXXRPWLLQTARHSLSFTSISFQPAT 1772
              P++L LIA RRIG+TPVFLVP              RPWLLQTAR SLS+TSISFQP+T
Sbjct: 751  NLPVNLLLIATRRIGITPVFLVPFSDSLDSDIIALSDRPWLLQTARQSLSYTSISFQPST 810

Query: 1773 HVTPVCSMDCPKGILFVAENRLHLVEMVHSKRLNVQKFSLGGTPRKVVYHSESRLLLVMR 1952
            H TPVCS +CP+GILFV+EN LHLVEMVHSKR N QKF LGGTPRKV+YHSES+LL+VMR
Sbjct: 811  HATPVCSFECPQGILFVSENCLHLVEMVHSKRRNAQKFQLGGTPRKVIYHSESKLLIVMR 870

Query: 1953 TELSGESCSSDICCVDPLSGSLLSSFKLEPGETGKSMQLVKVGDERVLVVGTNRFGGRAI 2132
            T+L  ++C+SDICCVDPLSGS+LSS+KL+PGETGKSM+LV+VG+E VLVVGT+   G AI
Sbjct: 871  TDLY-DTCTSDICCVDPLSGSVLSSYKLKPGETGKSMELVRVGNEHVLVVGTSLSSGPAI 929

Query: 2133 MHTGEAESSKGRLLVLCLEHTLNSVNSS----------------FREIVGYATEQXXXXX 2264
            + +GEAES+KGR+++LCLEHT NS + S                F ++VGY TE      
Sbjct: 930  LPSGEAESTKGRVIILCLEHTQNSDSGSMTICSKACSSSQRTSPFHDVVGYTTENLSSSS 989

Query: 2265 XXXXPEDNGFEGVKLEETEVWQLVLAYQTIIPGVVLAVCPYLDRYFLASAGNFFYLYGFV 2444
                P+D  ++G+KL+E E WQL LA  T  PG+VLA+CPYLD YFLASAGN FY+ GF 
Sbjct: 990  LCSSPDDYSYDGIKLDEAETWQLRLASSTTWPGMVLAICPYLDHYFLASAGNAFYVCGFP 1049

Query: 2445 NENPQRVRRLAYARTRFTITSLASDFTRIVVGDCRDGVLFYSYDEEPRRLKQLYCDPVQR 2624
            N++P+R++R A  RTRF ITSL + FTRIVVGDCRDGVLFYSY EE ++L Q+YCDP QR
Sbjct: 1050 NDSPERMKRFAVGRTRFMITSLRTYFTRIVVGDCRDGVLFYSYHEESKKLHQIYCDPAQR 1109

Query: 2625 LVADCTLMDMDTAVVSDRKGNLTVLSC--------------PNRVEDNASPECNLTLSCS 2762
            LVADC LMD ++  VSDRKG++ +LSC              P+   + +SPE NL L+C+
Sbjct: 1110 LVADCFLMDANSVAVSDRKGSIAILSCKDHSDFGMKHLVKIPHDNPEYSSPESNLNLNCA 1169

Query: 2763 YYIGETAMSIRKGSYSYKLPVDDTPNGCDIADTILNSSHNSIVASTMLGSVVVFIAISRE 2942
            YY+GE AMSI+KG   YKLP DD      ++ +I +++ ++I+A T+LGS+ VF  IS E
Sbjct: 1170 YYMGEIAMSIKKGCNIYKLPADDVLRSYGLSKSI-DTADDTIIAGTLLGSIFVFAPISSE 1228

Query: 2943 EFELLKAVQARLIIHPLTAPILGNDHNEFRGRGSAAGVSKMLDGDMLTQFLELTSSQQES 3122
            E+ELL+ VQA+L IHPLTAP+LGNDHNEFRGR + +   K+LDGDML QFLELT+ QQES
Sbjct: 1229 EYELLEGVQAKLGIHPLTAPVLGNDHNEFRGRENPSQARKILDGDMLAQFLELTNRQQES 1288

Query: 3123 VLAVPLGLKETGASISMPPSHKSISVNQVVRLLERVHYA 3239
            VL+ P     T  + S   S   + ++QVV+LLERVHYA
Sbjct: 1289 VLSTPQPSPSTSKASSKQRSFPPLMLHQVVQLLERVHYA 1327



 Score =  443 bits (1139), Expect(2) = 0.0
 Identities = 221/372 (59%), Positives = 276/372 (74%), Gaps = 17/372 (4%)
 Frame = +2

Query: 2    EVPYSYGFAVLFRVGDALLMDLSDPHNPRCVHKICLGLLP--------------IEDGVD 139
            EVP+S GFA LFR+GD LLMDL DP NP C+ +  L  +P              ++DG D
Sbjct: 223  EVPHSSGFAFLFRIGDVLLMDLRDPQNPCCLFRTSLDFVPASLMEEHFVEESCRVQDGDD 282

Query: 140  D--DVAVRALLELGMEMSKGDDPMIIDNENGQYNSLFKSMCSWSWEPGHNSNPTMFVSLD 313
            +  +V V ALLEL     +  DPM ID E+       K++ SW+WEP +N NP M + LD
Sbjct: 283  EGCNVVVCALLELRDHEVRDHDPMFIDTESDIGKLSSKNVSSWTWEPENNHNPRMIICLD 342

Query: 314  TGELLTLEISFESDGSKMNLSEPLYKCLPCKTLLWVKGDFVVALTEMGDGTVLKFEGGKL 493
             G+    E+ +E DG K+NLSE LYK LPCK +LW++G F+    EM DGTV K    KL
Sbjct: 343  NGDFFMFELIYEDDGVKVNLSECLYKGLPCKDILWIEGGFLATFAEMADGTVFKLGTEKL 402

Query: 494  SYMSPVQNIAPVLD-SVVDYHDDKQDQMFACCGVAPEGSLRIIRSGISVENLLRTAPIYQ 670
             +MS +QNIAP+LD SV+D  ++K+DQ+FACCGV PEGSLRIIRSGI+VE LL+TAP+YQ
Sbjct: 403  HWMSSIQNIAPILDFSVMDDQNEKRDQIFACCGVTPEGSLRIIRSGINVEKLLKTAPVYQ 462

Query: 671  GITGTWTLRMKVLDSFDSFLVLSFVEETRVLSVGLSFSDVTDAVGFQPDACTLACGLVGD 850
            GITGTWT++MK+ D + SFLVLSFVEETRVLSVGLSF DVTD+VGFQ D CT ACGLV D
Sbjct: 463  GITGTWTVKMKLTDVYHSFLVLSFVEETRVLSVGLSFKDVTDSVGFQSDVCTFACGLVAD 522

Query: 851  GLLVQIHRNAVRLCLPTTIAHPEGIPLSAPICTSWFPENVNISLGAVGQNMIIVATSNPC 1030
            GLLVQIH++A+RLC+PT  AH +GIP+S+P  +SWFPENV+ISLGAVGQN+I+V+TSNPC
Sbjct: 523  GLLVQIHQDAIRLCMPTMDAHSDGIPVSSPFFSSWFPENVSISLGAVGQNLIVVSTSNPC 582

Query: 1031 FLFILGARSLSA 1066
            FL ILG +S+S+
Sbjct: 583  FLSILGVKSVSS 594


>gb|AAF23212.1|AC016795_25 hypothetical protein [Arabidopsis thaliana]
            gi|10998135|dbj|BAB03106.1| unnamed protein product
            [Arabidopsis thaliana]
          Length = 1331

 Score =  741 bits (1914), Expect(2) = 0.0
 Identities = 404/751 (53%), Positives = 512/751 (68%), Gaps = 31/751 (4%)
 Frame = +3

Query: 1080 IYEMQHVRLQNEVSSISIPQR-ISKYKSSTSVVSLPNISKPCFGLPIGVEISDTFVIGTH 1256
            IYE+Q V LQ EVS IS+PQ+ I K +S  S  S  N  K    +P  +E   TF+IGTH
Sbjct: 629  IYEIQRVTLQYEVSCISVPQKHIGKKRSRDS--SPDNFCKAA--IPSAMEQGYTFLIGTH 684

Query: 1257 RPSVEILSFVPEE-GLRIVACGIISLSNTLGTAISGCVPQDVRLVLVDRFYVLSGLRNGM 1433
            +PSVE+LSF  +  G+R++A G++SL+NT+GT ISGC+PQDVRLVLVD+ YVLSGLRNGM
Sbjct: 685  KPSVEVLSFTEDGVGVRVLASGLVSLTNTMGTVISGCIPQDVRLVLVDQLYVLSGLRNGM 744

Query: 1434 LLRFEWPNMXXXXXXXXXXXXXXFMISNMAASFVSPSSSN-----EQCRDS--NILEKAE 1592
            LLRFEW                        A F + S  N       C++    ++ K +
Sbjct: 745  LLRFEW------------------------APFSNSSGLNCPDYFSHCKEEMDTVVGKKD 780

Query: 1593 KTPIHLELIAIRRIGVTPVFLVPLCXXXXXXXXXXXXRPWLLQTARHSLSFTSISFQPAT 1772
              P++L LIA RRIG+TPVFLVP              RPWLLQTAR SLS+TSISFQP+T
Sbjct: 781  NLPVNLLLIATRRIGITPVFLVPFSDSLDSDIIALSDRPWLLQTARQSLSYTSISFQPST 840

Query: 1773 HVTPVCSMDCPKGILFVAENRLHLVEMVHSKRLNVQKFSLGGTPRKVVYHSESRLLLVMR 1952
            H TPV                    EMVHSKR N QKF LGGTPRKV+YHSES+LL+VMR
Sbjct: 841  HATPV--------------------EMVHSKRRNAQKFQLGGTPRKVIYHSESKLLIVMR 880

Query: 1953 TELSGESCSSDICCVDPLSGSLLSSFKLEPGETGKSMQLVKVGDERVLVVGTNRFGGRAI 2132
            T+L  ++C+SDICCVDPLSGS+LSS+KL+PGETGKSM+LV+VG+E VLVVGT+   G AI
Sbjct: 881  TDLY-DTCTSDICCVDPLSGSVLSSYKLKPGETGKSMELVRVGNEHVLVVGTSLSSGPAI 939

Query: 2133 MHTGEAESSKGRLLVLCLEHTLNSVNSS----------------FREIVGYATEQXXXXX 2264
            + +GEAES+KGR+++LCLEHT NS + S                F ++VGY TE      
Sbjct: 940  LPSGEAESTKGRVIILCLEHTQNSDSGSMTICSKACSSSQRTSPFHDVVGYTTENLSSSS 999

Query: 2265 XXXXPEDNGFEGVKLEETEVWQLVLAYQTIIPGVVLAVCPYLDRYFLASAGNFFYLYGFV 2444
                P+D  ++G+KL+E E WQL LA  T  PG+VLA+CPYLD YFLASAGN FY+ GF 
Sbjct: 1000 LCSSPDDYSYDGIKLDEAETWQLRLASSTTWPGMVLAICPYLDHYFLASAGNAFYVCGFP 1059

Query: 2445 NENPQRVRRLAYARTRFTITSLASDFTRIVVGDCRDGVLFYSYDEEPRRLKQLYCDPVQR 2624
            N++P+R++R A  RTRF ITSL + FTRIVVGDCRDGVLFYSY EE ++L Q+YCDP QR
Sbjct: 1060 NDSPERMKRFAVGRTRFMITSLRTYFTRIVVGDCRDGVLFYSYHEESKKLHQIYCDPAQR 1119

Query: 2625 LVADCTLMDMDTAVVSDRKGNLTVLSCPNRVE------DNASPECNLTLSCSYYIGETAM 2786
            LVADC LMD ++  VSDRKG++ +LSC +  +      + +SPE NL L+C+YY+GE AM
Sbjct: 1120 LVADCFLMDANSVAVSDRKGSIAILSCKDHSDFGMKHLEYSSPESNLNLNCAYYMGEIAM 1179

Query: 2787 SIRKGSYSYKLPVDDTPNGCDIADTILNSSHNSIVASTMLGSVVVFIAISREEFELLKAV 2966
            SI+KG   YKLP DD      ++ +I +++ ++I+A T+LGS+ VF  IS EE+ELL+ V
Sbjct: 1180 SIKKGCNIYKLPADDVLRSYGLSKSI-DTADDTIIAGTLLGSIFVFAPISSEEYELLEGV 1238

Query: 2967 QARLIIHPLTAPILGNDHNEFRGRGSAAGVSKMLDGDMLTQFLELTSSQQESVLAVPLGL 3146
            QA+L IHPLTAP+LGNDHNEFRGR + +   K+LDGDML QFLELT+ QQESVL+ P   
Sbjct: 1239 QAKLGIHPLTAPVLGNDHNEFRGRENPSQARKILDGDMLAQFLELTNRQQESVLSTPQPS 1298

Query: 3147 KETGASISMPPSHKSISVNQVVRLLERVHYA 3239
              T  + S   S   + ++QVV+LLERVHYA
Sbjct: 1299 PSTSKASSKQRSFPPLMLHQVVQLLERVHYA 1329



 Score =  443 bits (1139), Expect(2) = 0.0
 Identities = 221/372 (59%), Positives = 276/372 (74%), Gaps = 17/372 (4%)
 Frame = +2

Query: 2    EVPYSYGFAVLFRVGDALLMDLSDPHNPRCVHKICLGLLP--------------IEDGVD 139
            EVP+S GFA LFR+GD LLMDL DP NP C+ +  L  +P              ++DG D
Sbjct: 253  EVPHSSGFAFLFRIGDVLLMDLRDPQNPCCLFRTSLDFVPASLMEEHFVEESCRVQDGDD 312

Query: 140  D--DVAVRALLELGMEMSKGDDPMIIDNENGQYNSLFKSMCSWSWEPGHNSNPTMFVSLD 313
            +  +V V ALLEL     +  DPM ID E+       K++ SW+WEP +N NP M + LD
Sbjct: 313  EGCNVVVCALLELRDHEVRDHDPMFIDTESDIGKLSSKNVSSWTWEPENNHNPRMIICLD 372

Query: 314  TGELLTLEISFESDGSKMNLSEPLYKCLPCKTLLWVKGDFVVALTEMGDGTVLKFEGGKL 493
             G+    E+ +E DG K+NLSE LYK LPCK +LW++G F+    EM DGTV K    KL
Sbjct: 373  NGDFFMFELIYEDDGVKVNLSECLYKGLPCKDILWIEGGFLATFAEMADGTVFKLGTEKL 432

Query: 494  SYMSPVQNIAPVLD-SVVDYHDDKQDQMFACCGVAPEGSLRIIRSGISVENLLRTAPIYQ 670
             +MS +QNIAP+LD SV+D  ++K+DQ+FACCGV PEGSLRIIRSGI+VE LL+TAP+YQ
Sbjct: 433  HWMSSIQNIAPILDFSVMDDQNEKRDQIFACCGVTPEGSLRIIRSGINVEKLLKTAPVYQ 492

Query: 671  GITGTWTLRMKVLDSFDSFLVLSFVEETRVLSVGLSFSDVTDAVGFQPDACTLACGLVGD 850
            GITGTWT++MK+ D + SFLVLSFVEETRVLSVGLSF DVTD+VGFQ D CT ACGLV D
Sbjct: 493  GITGTWTVKMKLTDVYHSFLVLSFVEETRVLSVGLSFKDVTDSVGFQSDVCTFACGLVAD 552

Query: 851  GLLVQIHRNAVRLCLPTTIAHPEGIPLSAPICTSWFPENVNISLGAVGQNMIIVATSNPC 1030
            GLLVQIH++A+RLC+PT  AH +GIP+S+P  +SWFPENV+ISLGAVGQN+I+V+TSNPC
Sbjct: 553  GLLVQIHQDAIRLCMPTMDAHSDGIPVSSPFFSSWFPENVSISLGAVGQNLIVVSTSNPC 612

Query: 1031 FLFILGARSLSA 1066
            FL ILG +S+S+
Sbjct: 613  FLSILGVKSVSS 624