BLASTX nr result
ID: Papaver23_contig00011026
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver23_contig00011026
(773 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAF92185.1| unnamed protein product [Tetraodon nigroviridis] 51 3e-16
ref|XP_003481179.1| PREDICTED: U5 small nuclear ribonucleoprotei... 51 2e-15
ref|XP_003571468.1| PREDICTED: U5 small nuclear ribonucleoprotei... 54 1e-13
ref|XP_002318725.1| predicted protein [Populus trichocarpa] gi|2... 53 2e-13
ref|XP_002518663.1| U520, putative [Ricinus communis] gi|2235420... 52 2e-13
>emb|CAF92185.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1560
Score = 51.2 bits (121), Expect(3) = 3e-16
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = +1
Query: 1 QMLGRAGRPQHDTSWEGIIITGHSEL*YYL 90
QMLGRAGRPQ+DT EGI+IT H+EL YYL
Sbjct: 780 QMLGRAGRPQYDTKGEGILITSHAELQYYL 809
Score = 41.6 bits (96), Expect(3) = 3e-16
Identities = 27/83 (32%), Positives = 42/83 (50%)
Frame = +2
Query: 371 LAKPSAKITVLLEGYISLPKLGGLSLASSMVFITQERRKSKIGKFYKNPCNPTVQRCIQS 550
+ +PSAKI VLL+ YIS KL G +L + MV++TQ + + R I
Sbjct: 915 IEEPSAKINVLLQAYISQLKLEGFALMADMVYVTQSAGR--------------LMRAIFE 960
Query: 551 LVQFTGRLKVCEKTPHPCN*KDR 619
+V G ++ +KT + C D+
Sbjct: 961 IVLSRGWAQLTDKTMNLCKMIDK 983
Score = 38.1 bits (87), Expect(3) = 3e-16
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Frame = +3
Query: 93 LMNNQLSIASQIVSKLADQLMLKLFLEH----------QSAIEEYNWRNC--TYLSVRNP 236
L+N QL I SQ+VSKL D L ++ L + + A Y + TY + P
Sbjct: 811 LLNQQLPIESQMVSKLPDMLNAEIVLGNVQNSKVTDLGRIASHFYVTHDSIQTYNQLLKP 870
Query: 237 TLSGLQLMF*VGT*LWKKGGLICETRQEDETCERLNLVPISVKESLQNPVPKL 395
TLS ++L F V + + + ++ E + L VPI VKES++ P K+
Sbjct: 871 TLSEIEL-FRVFSLSSEFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKI 922
>ref|XP_003481179.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Sus
scrofa]
Length = 1159
Score = 50.8 bits (120), Expect(3) = 2e-15
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = +1
Query: 1 QMLGRAGRPQHDTSWEGIIITGHSEL*YYL 90
QMLGRAGRPQ+DT EGI+IT H EL YYL
Sbjct: 851 QMLGRAGRPQYDTKGEGILITSHGELQYYL 880
Score = 39.3 bits (90), Expect(3) = 2e-15
Identities = 26/83 (31%), Positives = 42/83 (50%)
Frame = +2
Query: 371 LAKPSAKITVLLEGYISLPKLGGLSLASSMVFITQERRKSKIGKFYKNPCNPTVQRCIQS 550
+ +PSAKI VLL+ +IS KL G +L + MV++TQ + + R I
Sbjct: 986 IEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGR--------------LMRAIFE 1031
Query: 551 LVQFTGRLKVCEKTPHPCN*KDR 619
+V G ++ +KT + C D+
Sbjct: 1032 IVLNRGWAQLTDKTLNLCKMIDK 1054
Score = 37.7 bits (86), Expect(3) = 2e-15
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Frame = +3
Query: 93 LMNNQLSIASQIVSKLADQLMLKLFLEH-QSA--------IEEYNWRNCT---YLSVRNP 236
L+N QL I SQ+V+KL D L ++ L + Q+A Y N T Y + P
Sbjct: 882 LLNQQLPIESQMVAKLPDMLNAEIVLGNVQNAKVTELGRIASHYYITNDTVQTYNQLLKP 941
Query: 237 TLSGLQLMF*VGT*LWKKGGLICETRQEDETCERLNLVPISVKESLQNPVPKL 395
TLS ++L F V + + + ++ E + L VPI VKES++ P K+
Sbjct: 942 TLSEIEL-FRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKI 993
>ref|XP_003571468.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase
[Brachypodium distachyon]
Length = 2179
Score = 54.3 bits (129), Expect(2) = 1e-13
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +1
Query: 1 QMLGRAGRPQHDTSWEGIIITGHSEL*YYL 90
QMLGRAGRPQ+DT EGII+TGHSEL YYL
Sbjct: 888 QMLGRAGRPQYDTHGEGIILTGHSELQYYL 917
Score = 48.1 bits (113), Expect(2) = 1e-13
Identities = 31/57 (54%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Frame = +3
Query: 93 LMNNQLSIASQIVSKLADQLMLKLFL-EHQSAIEEYNWRNCTYLSV---RNPTLSGL 251
LMN QL I SQ VSKLADQL ++ L Q+A E +W TYL + RNPTL GL
Sbjct: 919 LMNQQLPIESQFVSKLADQLNAEIVLGTIQNAREACSWLGYTYLYIRMLRNPTLYGL 975
>ref|XP_002318725.1| predicted protein [Populus trichocarpa] gi|222859398|gb|EEE96945.1|
predicted protein [Populus trichocarpa]
Length = 2175
Score = 53.1 bits (126), Expect(2) = 2e-13
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +1
Query: 1 QMLGRAGRPQHDTSWEGIIITGHSEL*YYL 90
QMLGRAGRPQ+D+ EGIIITGHSEL YYL
Sbjct: 875 QMLGRAGRPQYDSYGEGIIITGHSELQYYL 904
Score = 48.9 bits (115), Expect(2) = 2e-13
Identities = 32/57 (56%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Frame = +3
Query: 93 LMNNQLSIASQIVSKLADQLMLKLFL-EHQSAIEEYNWRNCTYLSV---RNPTLSGL 251
LMN QL I SQ VSKLADQL ++ L Q+A E +W TYL V RNPTL GL
Sbjct: 906 LMNQQLPIESQFVSKLADQLNAEIVLGSVQNAREACHWLEYTYLYVRMMRNPTLYGL 962
>ref|XP_002518663.1| U520, putative [Ricinus communis] gi|223542044|gb|EEF43588.1| U520,
putative [Ricinus communis]
Length = 1809
Score = 52.0 bits (123), Expect(2) = 2e-13
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +1
Query: 1 QMLGRAGRPQHDTSWEGIIITGHSEL*YYL 90
QMLGRAGRPQ+D+ EGIIITGH+EL YYL
Sbjct: 515 QMLGRAGRPQYDSYGEGIIITGHTELQYYL 544
Score = 50.1 bits (118), Expect(2) = 2e-13
Identities = 32/57 (56%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Frame = +3
Query: 93 LMNNQLSIASQIVSKLADQLMLKLFL-EHQSAIEEYNWRNCTYLSV---RNPTLSGL 251
LMN QL I SQ VSKLADQL ++ L Q+A E NW TYL + RNPTL GL
Sbjct: 546 LMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWLGYTYLYIRMLRNPTLYGL 602