BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver23_contig00005083
         (674 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFV74904.1| RNA polymerase II second largest subunit, partial...    70   5e-10
gb|AAB94061.1| RPB140 [Magnolia virginiana]                            69   6e-10
gb|AAY89344.1| RNA polymerase II second largest subunit [Petunia...    69   6e-10
dbj|BAG72319.1| RNA polymerase II second largest subunit [Actino...    69   1e-09
emb|CAD89598.1| RNA polymerase II, second largest subunit [Borag...    68   1e-09

>gb|AFV74904.1| RNA polymerase II second largest subunit, partial [Viscum
           alniformosanae]
          Length = 569

 Score = 69.7 bits (169), Expect = 5e-10
 Identities = 56/146 (38%), Positives = 68/146 (46%), Gaps = 8/146 (5%)
 Frame = -1

Query: 614 QG*VFHNKQCDHNNSMRHNEIGIR*PME*IR*IYTCK*ANXXXXXXXXVWMRSVRIYQIG 435
           QG  F   + DH+ S+RH+E GI   +     + T    N        V +RSVRI QIG
Sbjct: 365 QGQSFRYTKRDHSTSLRHSETGIVDQV-----LLT---TNADGLRFVKVRVRSVRIPQIG 416

Query: 434 GKFSGRHGLKRTVGMTCTEEDIPW*RQHPRYHCESTFXXXXXXXXXXIDSST-------- 279
            KFS RHG K TVGMT T+ED+PW         E                 T        
Sbjct: 417 DKFSSRHGQKGTVGMTYTQEDMPW-------TVEGITPDIIVNPHAIPSRMTIGQLIECI 469

Query: 278 MRKVADHMGNEGDATSFSWLYLFNFS 201
           M KVA HMG EGDAT F+ + + N S
Sbjct: 470 MGKVAAHMGKEGDATPFTDVTVDNIS 495


>gb|AAB94061.1| RPB140 [Magnolia virginiana]
          Length = 555

 Score = 69.3 bits (168), Expect = 6e-10
 Identities = 54/140 (38%), Positives = 70/140 (50%), Gaps = 1/140 (0%)
 Frame = -1

Query: 617 LQG*VFHNKQCDHNNSMRHNEIGIR*PME*IR*IYTCK*ANXXXXXXXXVWMRSVRIYQI 438
           +QG V    + DH+ S+RH+E G+   +     + T    N        V MRSVRI QI
Sbjct: 376 VQGQVTRYTRRDHSTSLRHSESGMVDQV-----LLT---TNADGLRFVKVRMRSVRIPQI 427

Query: 437 GGKFSGRHGLKRTVGMTCTEEDIPW*RQHPRYH-CESTFXXXXXXXXXXIDSSTMRKVAD 261
           G KFS RHG K TVGMT T+ED+PW  +        +            +    M KVA 
Sbjct: 428 GDKFSSRHGQKGTVGMTYTQEDMPWTPEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 487

Query: 260 HMGNEGDATSFSWLYLFNFS 201
           HMG EGDAT F+ + + N S
Sbjct: 488 HMGKEGDATPFTDVTVDNIS 507


>gb|AAY89344.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1203

 Score = 69.3 bits (168), Expect = 6e-10
 Identities = 50/129 (38%), Positives = 65/129 (50%), Gaps = 1/129 (0%)
 Frame = -1

Query: 584  DHNNSMRHNEIGIR*PME*IR*IYTCK*ANXXXXXXXXVWMRSVRIYQIGGKFSGRHGLK 405
            DH+ S+RH+E GI   +     + T    N        + MRSVRI QIG KFS RHG K
Sbjct: 910  DHSTSLRHSETGIVDQV-----LLT---TNADGLRFVKIRMRSVRIPQIGDKFSSRHGQK 961

Query: 404  RTVGMTCTEEDIPW*RQHPRYH-CESTFXXXXXXXXXXIDSSTMRKVADHMGNEGDATSF 228
             T+GMT T+ED+PW  +        +            +    M KVA HMG EGDAT F
Sbjct: 962  GTIGMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLVECVMGKVAAHMGKEGDATPF 1021

Query: 227  SWLYLFNFS 201
            + + + N S
Sbjct: 1022 TDVTVDNIS 1030


>dbj|BAG72319.1| RNA polymerase II second largest subunit [Actinodaphne malaccensis]
          Length = 167

 Score = 68.6 bits (166), Expect = 1e-09
 Identities = 50/121 (41%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
 Frame = -1

Query: 584 DHNNSMRHNEIGIR*PME*IR*IYTCK*ANXXXXXXXXVWMRSVRIYQIGGKFSGRHGLK 405
           DH+ S+RH+EIG+   +     + T    N        V MRSVRI QIG KFS RHG K
Sbjct: 52  DHSTSLRHSEIGMVDQV-----LLT---TNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 103

Query: 404 RTVGMTCTEEDIPW*RQHPRYH-CESTFXXXXXXXXXXIDSSTMRKVADHMGNEGDATSF 228
            TVGMT T+ED+PW  +        +            +    M KVA HMG EGDAT F
Sbjct: 104 GTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 163

Query: 227 S 225
           +
Sbjct: 164 T 164


>emb|CAD89598.1| RNA polymerase II, second largest subunit [Borago officinalis]
          Length = 355

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 54/136 (39%), Positives = 64/136 (47%), Gaps = 8/136 (5%)
 Frame = -1

Query: 584 DHNNSMRHNEIGIR*PME*IR*IYTCK*ANXXXXXXXXVWMRSVRIYQIGGKFSGRHGLK 405
           DH+ SMRH+E G+   +     + T    N        V MRSVRI QIG KFS RHG K
Sbjct: 162 DHSTSMRHSENGMVDQV-----LLT---TNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 213

Query: 404 RTVGMTCTEEDIPW*RQHPRYHCESTFXXXXXXXXXXIDSST--------MRKVADHMGN 249
            TVGMT T+ED+PW         E                 T        M KVA HMG 
Sbjct: 214 GTVGMTYTQEDMPW-------TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 266

Query: 248 EGDATSFSWLYLFNFS 201
           EGDAT F+ + + N S
Sbjct: 267 EGDATPFTDVTVDNIS 282