BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver23_contig00004807
         (734 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, I...   236   1e-78
ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|2...   238   2e-78
ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrat...   239   3e-76
ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabi...   238   1e-75
ref|XP_002514265.1| DNA-directed RNA polymerase II, putative [Ri...   235   6e-75

>ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1 isoform 1 [Vitis vinifera]
           gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC1 isoform 2
           [Vitis vinifera]
          Length = 206

 Score =  236 bits (603), Expect(2) = 1e-78
 Identities = 116/129 (89%), Positives = 126/129 (97%)
 Frame = -2

Query: 391 VGVKTMKTYTNRMKNDEVHRALLVVQQNLTPFARTCISEISSKFHLEVFQEAELLVNIKE 212
           VGVKTMKTYTNRMK++ V RA+LVVQQNLTPFARTCI+EIS+KFHLEVFQEAELLVNIKE
Sbjct: 78  VGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTKFHLEVFQEAELLVNIKE 137

Query: 211 HVLVPEHQVLTPEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAG 32
           HVLVPEHQVLT EEKKTLLERYT+KETQLPRIQ++DPIARY+GLKRGQVVKIIRPSETAG
Sbjct: 138 HVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQVSDPIARYFGLKRGQVVKIIRPSETAG 197

Query: 31  RYVTYRYVV 5
           RY+TYRYVV
Sbjct: 198 RYITYRYVV 206



 Score = 83.2 bits (204), Expect(2) = 1e-78
 Identities = 37/56 (66%), Positives = 49/56 (87%)
 Frame = -3

Query: 666 ATDEDITRLYRVRRTVMQMLNDRGYLVGDFELKETRAQFLSKFGDNLKREDLDIKK 499
           A++E+I+RL+R+R+TVMQML DRGY VGDFE+  T+ QF+SKFG+N+KREDL I K
Sbjct: 3   ASEEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINK 58


>ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|222873254|gb|EEF10385.1|
           predicted protein [Populus trichocarpa]
          Length = 206

 Score =  238 bits (607), Expect(2) = 2e-78
 Identities = 118/129 (91%), Positives = 126/129 (97%)
 Frame = -2

Query: 391 VGVKTMKTYTNRMKNDEVHRALLVVQQNLTPFARTCISEISSKFHLEVFQEAELLVNIKE 212
           VGVKTMKTYTNRMK++ V RA+LVVQQNLTPFARTCI+EIS+KFHLEVFQEAELLVNIKE
Sbjct: 78  VGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTKFHLEVFQEAELLVNIKE 137

Query: 211 HVLVPEHQVLTPEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAG 32
           HVLVPEHQVL+ EEKKTLLERYT+KETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAG
Sbjct: 138 HVLVPEHQVLSNEEKKTLLERYTVKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAG 197

Query: 31  RYVTYRYVV 5
           RYVTYRYV+
Sbjct: 198 RYVTYRYVI 206



 Score = 81.3 bits (199), Expect(2) = 2e-78
 Identities = 38/55 (69%), Positives = 46/55 (83%)
 Frame = -3

Query: 663 TDEDITRLYRVRRTVMQMLNDRGYLVGDFELKETRAQFLSKFGDNLKREDLDIKK 499
           T+E+I RL R+R+TVMQML DRGY VGDFE+K TR QF SK+G+N+KREDL I K
Sbjct: 4   TEEEIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINK 58


>ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
           gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 205

 Score =  239 bits (609), Expect(2) = 3e-76
 Identities = 118/129 (91%), Positives = 126/129 (97%)
 Frame = -2

Query: 391 VGVKTMKTYTNRMKNDEVHRALLVVQQNLTPFARTCISEISSKFHLEVFQEAELLVNIKE 212
           VGVKTMK YTNRMK++ V+RA+LVVQQNLTPFARTCISEISSKFHLEVFQEAE+LVNIKE
Sbjct: 77  VGVKTMKMYTNRMKSENVYRAILVVQQNLTPFARTCISEISSKFHLEVFQEAEMLVNIKE 136

Query: 211 HVLVPEHQVLTPEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAG 32
           HVLVPEHQVLT EEKKTLLERYT+KETQLPRIQ+TDPIARY+GLKRGQVVKIIRPSETAG
Sbjct: 137 HVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPSETAG 196

Query: 31  RYVTYRYVV 5
           RYVTYRYVV
Sbjct: 197 RYVTYRYVV 205



 Score = 72.8 bits (177), Expect(2) = 3e-76
 Identities = 32/53 (60%), Positives = 42/53 (79%)
 Frame = -3

Query: 669 MATDEDITRLYRVRRTVMQMLNDRGYLVGDFELKETRAQFLSKFGDNLKREDL 511
           M T+E+I RLYR+++T+MQML DRGY + D EL  T+ QF+ K GDN+KREDL
Sbjct: 1   MLTEEEIKRLYRIQKTLMQMLKDRGYFIADSELTMTKQQFIRKHGDNMKREDL 53


>ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
           gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5
           [Arabidopsis thaliana] gi|3372233|gb|AAC28253.1| RNA
           polymerase I, II and III 24.3 kDa subunit [Arabidopsis
           thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase
           II subunit E [Arabidopsis thaliana]
          Length = 205

 Score =  238 bits (606), Expect(2) = 1e-75
 Identities = 118/129 (91%), Positives = 125/129 (96%)
 Frame = -2

Query: 391 VGVKTMKTYTNRMKNDEVHRALLVVQQNLTPFARTCISEISSKFHLEVFQEAELLVNIKE 212
           VGVKTMK YTNRMK++ V RA+LVVQQNLTPFARTCISEISSKFHLEVFQEAE+LVNIKE
Sbjct: 77  VGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQEAEMLVNIKE 136

Query: 211 HVLVPEHQVLTPEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAG 32
           HVLVPEHQVLT EEKKTLLERYT+KETQLPRIQ+TDPIARY+GLKRGQVVKIIRPSETAG
Sbjct: 137 HVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPSETAG 196

Query: 31  RYVTYRYVV 5
           RYVTYRYVV
Sbjct: 197 RYVTYRYVV 205



 Score = 72.0 bits (175), Expect(2) = 1e-75
 Identities = 31/53 (58%), Positives = 42/53 (79%)
 Frame = -3

Query: 669 MATDEDITRLYRVRRTVMQMLNDRGYLVGDFELKETRAQFLSKFGDNLKREDL 511
           M T+E++ RLYR+++T+MQML DRGY + D EL  T+ QF+ K GDN+KREDL
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDL 53


>ref|XP_002514265.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
           gi|223546721|gb|EEF48219.1| DNA-directed RNA polymerase
           II, putative [Ricinus communis]
          Length = 225

 Score =  235 bits (600), Expect(2) = 6e-75
 Identities = 117/129 (90%), Positives = 126/129 (97%)
 Frame = -2

Query: 391 VGVKTMKTYTNRMKNDEVHRALLVVQQNLTPFARTCISEISSKFHLEVFQEAELLVNIKE 212
           VGVKTMKTYTNRMK++ V RA+LVVQQ+LTPFARTCI+EI+SKFHLEVFQE+ELLVNIKE
Sbjct: 97  VGVKTMKTYTNRMKSENVFRAILVVQQSLTPFARTCIAEIASKFHLEVFQESELLVNIKE 156

Query: 211 HVLVPEHQVLTPEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAG 32
           HVLVPEHQVLT EEKKTLLERYT+KETQLPRIQI+DPIARYYGLKRGQVVKIIRPSETAG
Sbjct: 157 HVLVPEHQVLTNEEKKTLLERYTVKETQLPRIQISDPIARYYGLKRGQVVKIIRPSETAG 216

Query: 31  RYVTYRYVV 5
           RYVTYRYVV
Sbjct: 217 RYVTYRYVV 225



 Score = 72.0 bits (175), Expect(2) = 6e-75
 Identities = 34/55 (61%), Positives = 44/55 (80%)
 Frame = -3

Query: 663 TDEDITRLYRVRRTVMQMLNDRGYLVGDFELKETRAQFLSKFGDNLKREDLDIKK 499
           ++++I RL+R+RRTVMQML DR YLV D E+  T+ QF SK+GDN+KREDL I K
Sbjct: 4   SEDEIKRLFRIRRTVMQMLKDRTYLVTDSEINITKHQFTSKYGDNMKREDLVIHK 58