BLASTX nr result

ID: Papaver23_contig00001598 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver23_contig00001598
         (703 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270819.1| PREDICTED: 50S ribosomal protein L18, chloro...   233   2e-59
ref|XP_004147640.1| PREDICTED: 50S ribosomal protein L18, chloro...   226   4e-57
ref|XP_002509912.1| 50S ribosomal protein L18, chloroplast precu...   226   4e-57
gb|AFK34990.1| unknown [Lotus japonicus] gi|388495768|gb|AFK3595...   224   2e-56
ref|XP_003595391.1| 50S ribosomal protein L18 [Medicago truncatu...   222   6e-56

>ref|XP_002270819.1| PREDICTED: 50S ribosomal protein L18, chloroplastic isoform 1
           [Vitis vinifera] gi|189096139|pdb|3BBO|Q Chain Q,
           Homology Model For The Spinach Chloroplast 50s Subunit
           Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
           gi|147854297|emb|CAN83428.1| hypothetical protein
           VITISV_034871 [Vitis vinifera]
           gi|297736841|emb|CBI26042.3| unnamed protein product
           [Vitis vinifera]
          Length = 161

 Score =  233 bits (595), Expect = 2e-59
 Identities = 120/164 (73%), Positives = 135/164 (82%)
 Frame = +2

Query: 83  MASSLSFAQSAFVCPQSHQFCNFRPKLSSSSSTFGAAVTIEAKTRTRREDRQARHVRIRK 262
           M +SLSF QSAF    S Q     PK +++     +   IEAK +TRREDR ARHVRIRK
Sbjct: 1   MCASLSFLQSAFA---SSQQLPLLPKFAAAKPLLPSFPIIEAKAKTRREDRTARHVRIRK 57

Query: 263 KVEGTPERPRLSVFRSNKHLYAQVIDDSKMHTLASASTMQKAISEQLDFTAGPTIEVAKK 442
           KVEGTPERPRL VFRSNKHLY QVIDDSKMHTLASASTMQK+ISE+LD+++ PTIEVAKK
Sbjct: 58  KVEGTPERPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKK 117

Query: 443 VGEIIAKSCLEKGIVKVAFDRGGYPYHGRIEALADAAREHGLQF 574
           VGE+IA +CLEKGI KVAFDRGGYPYHGR++ALADAARE GLQF
Sbjct: 118 VGEVIASACLEKGITKVAFDRGGYPYHGRVKALADAAREKGLQF 161


>ref|XP_004147640.1| PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Cucumis
           sativus] gi|449498793|ref|XP_004160635.1| PREDICTED: 50S
           ribosomal protein L18, chloroplastic-like [Cucumis
           sativus]
          Length = 170

 Score =  226 bits (575), Expect = 4e-57
 Identities = 117/162 (72%), Positives = 133/162 (82%), Gaps = 3/162 (1%)
 Frame = +2

Query: 98  SFAQSAFVCPQSHQFCNFRPKLS---SSSSTFGAAVTIEAKTRTRREDRQARHVRIRKKV 268
           SF +++F+     Q    RP L    ++SS+   ++ +EAK  TRREDR ARH RIRKKV
Sbjct: 9   SFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTARHSRIRKKV 68

Query: 269 EGTPERPRLSVFRSNKHLYAQVIDDSKMHTLASASTMQKAISEQLDFTAGPTIEVAKKVG 448
           EGT ERPRLSVFRSNKHLY QVIDDSKMHTLA+ STMQK+ISE LD++AGPTIEVAKK+G
Sbjct: 69  EGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKIG 128

Query: 449 EIIAKSCLEKGIVKVAFDRGGYPYHGRIEALADAAREHGLQF 574
           E IAKSCLEKGI KVAFDRGGYPYHGR+EALADAAREHGLQF
Sbjct: 129 EAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170


>ref|XP_002509912.1| 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus
           communis] gi|223549811|gb|EEF51299.1| 50S ribosomal
           protein L18, chloroplast precursor, putative [Ricinus
           communis]
          Length = 164

 Score =  226 bits (575), Expect = 4e-57
 Identities = 115/164 (70%), Positives = 135/164 (82%)
 Frame = +2

Query: 83  MASSLSFAQSAFVCPQSHQFCNFRPKLSSSSSTFGAAVTIEAKTRTRREDRQARHVRIRK 262
           MA++ +   S+F+  + H   +   + + +       + IEA T+TRRE+R ARHVRIRK
Sbjct: 1   MATAAASICSSFLGYRQHLSASISARPNPTPIQPPRFLRIEANTKTRRENRTARHVRIRK 60

Query: 263 KVEGTPERPRLSVFRSNKHLYAQVIDDSKMHTLASASTMQKAISEQLDFTAGPTIEVAKK 442
           KVEGTPERPRLSVFRSNKHLY QVIDDSKMHTLASASTMQK ISE+ D+++GPT+EVAKK
Sbjct: 61  KVEGTPERPRLSVFRSNKHLYVQVIDDSKMHTLASASTMQKPISEEFDYSSGPTLEVAKK 120

Query: 443 VGEIIAKSCLEKGIVKVAFDRGGYPYHGRIEALADAAREHGLQF 574
           VGE+IAKSCLEKGI KVAFDRGGYPYHGRIEALADAARE+GLQF
Sbjct: 121 VGEVIAKSCLEKGITKVAFDRGGYPYHGRIEALADAARENGLQF 164


>gb|AFK34990.1| unknown [Lotus japonicus] gi|388495768|gb|AFK35950.1| unknown
           [Lotus japonicus]
          Length = 162

 Score =  224 bits (570), Expect = 2e-56
 Identities = 121/172 (70%), Positives = 134/172 (77%), Gaps = 8/172 (4%)
 Frame = +2

Query: 83  MASSLSFAQSAFVCPQSHQFCNFRPKLSSSSSTFGAAV--------TIEAKTRTRREDRQ 238
           +ASSLSF  S          C F P  SSSSS F  +          +EAK+RTR +DR 
Sbjct: 2   VASSLSFLHS----------CAF-PSSSSSSSLFTTSTPNPNSLPFVVEAKSRTRTDDRT 50

Query: 239 ARHVRIRKKVEGTPERPRLSVFRSNKHLYAQVIDDSKMHTLASASTMQKAISEQLDFTAG 418
           ARH RIRKKVEGTPERPRL+VFRSNKHL  QVIDD+KMHTLASASTMQKAI+E+  +TAG
Sbjct: 51  ARHARIRKKVEGTPERPRLAVFRSNKHLAVQVIDDTKMHTLASASTMQKAIAEEFSYTAG 110

Query: 419 PTIEVAKKVGEIIAKSCLEKGIVKVAFDRGGYPYHGRIEALADAAREHGLQF 574
           PTIEVAKKVGEIIAKSCLEKGI KVAFDRGGYPYHGR++ALADAARE+GL F
Sbjct: 111 PTIEVAKKVGEIIAKSCLEKGITKVAFDRGGYPYHGRVQALADAARENGLDF 162


>ref|XP_003595391.1| 50S ribosomal protein L18 [Medicago truncatula]
           gi|124360326|gb|ABN08339.1| Ribosomal protein L18
           [Medicago truncatula] gi|355484439|gb|AES65642.1| 50S
           ribosomal protein L18 [Medicago truncatula]
           gi|388519743|gb|AFK47933.1| unknown [Medicago
           truncatula]
          Length = 166

 Score =  222 bits (565), Expect = 6e-56
 Identities = 116/166 (69%), Positives = 133/166 (80%)
 Frame = +2

Query: 77  TTMASSLSFAQSAFVCPQSHQFCNFRPKLSSSSSTFGAAVTIEAKTRTRREDRQARHVRI 256
           T  +SS S + S F  P  +      P  SSSS +F    T      TRREDR ARHVR+
Sbjct: 13  TFPSSSSSSSSSLFTIPTPN------PNSSSSSLSFVVQAT------TRREDRIARHVRL 60

Query: 257 RKKVEGTPERPRLSVFRSNKHLYAQVIDDSKMHTLASASTMQKAISEQLDFTAGPTIEVA 436
           RKK+EGTPERPRLSVFRSNKHL+ QVIDD+KMHTLASASTMQKAI+E+L+FT+GPTIEVA
Sbjct: 61  RKKIEGTPERPRLSVFRSNKHLFVQVIDDTKMHTLASASTMQKAIAEELNFTSGPTIEVA 120

Query: 437 KKVGEIIAKSCLEKGIVKVAFDRGGYPYHGRIEALADAAREHGLQF 574
           K+VGEIIAKSCLEKGI KV FDRGGYPYHGR++A+ADAAREHGL+F
Sbjct: 121 KRVGEIIAKSCLEKGITKVVFDRGGYPYHGRVKAIADAAREHGLEF 166


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