BLASTX nr result

ID: Papaver22_contig00036234 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver22_contig00036234
         (424 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thalia...    60   1e-07

>ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
           thaliana] gi|7269807|emb|CAB79667.1| putative protein
           [Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
           putative reverse transcriptase/RNA-dependent DNA
           polymerase [Arabidopsis thaliana]
           gi|332660185|gb|AEE85585.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 575

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 32/115 (27%), Positives = 54/115 (46%)
 Frame = +2

Query: 68  WFVSISGVNDQLQRSIQLAGIVLWHIWKTRCQLVFDNLCIPVVTLSMQVKKFISDWDTNL 247
           W  ++   N Q +++ QL   +LW +WK R +LVF         +  + +  + +W    
Sbjct: 342 WVFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRT 401

Query: 248 TTMSINGQNVQGRADRSSRWIVPTNPFVKINFDASFKTDCNKCGLGLIMRSFAGE 412
              S  G   Q       RW  P + +VK N DA++  D  +CG+G ++R+  GE
Sbjct: 402 EAESC-GTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGE 455


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