BLASTX nr result

ID: Papaver22_contig00035117 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver22_contig00035117
         (592 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002319944.1| f-box family protein [Populus trichocarpa] g...    60   3e-07
ref|XP_003540862.1| PREDICTED: putative F-box/FBD/LRR-repeat pro...    59   5e-07
ref|XP_003636673.1| F-box family protein [Medicago truncatula] g...    55   7e-06

>ref|XP_002319944.1| f-box family protein [Populus trichocarpa]
           gi|222858320|gb|EEE95867.1| f-box family protein
           [Populus trichocarpa]
          Length = 511

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 14/141 (9%)
 Frame = -3

Query: 590 LLCETSTLLGKNFTFSNLNYLKLTAAVNKETVKRVSFVLHSSPKLEFLSI----DFFLRR 423
           +L   + ++     F+NL  L+L     K  V  ++F+  SSP L  L +    DF   R
Sbjct: 347 ILSNKNDIINLLHPFNNLKVLELHTGFEKNNVPGLAFLFRSSPTLHTLILKIINDFKTER 406

Query: 422 QGIN----------EEESFEPQTTAYEYCFDNLKVVKIKGFRGNENEVALVKSLLENAKI 273
           +  N          EE+ +E Q  A     D+LKVVKI GF   ENEV+L K LL++ K 
Sbjct: 407 RQWNRDLWDLSTSAEEQYWESQLQALRPFLDHLKVVKIHGFLECENEVSLAKFLLKHGKD 466

Query: 272 LEKMIIVFLKQISANSKLQNQ 210
           L++M +      +    L+ Q
Sbjct: 467 LQEMTLCTANCCNFKDSLRRQ 487


>ref|XP_003540862.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220-like
           [Glycine max]
          Length = 510

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
 Frame = -3

Query: 548 FSNLNYLKLTAAVNKETVKRVSFVLHSSPKLEFLSI----DFFLRRQGINE--------- 408
           F NL +L+L    NK  V  ++ +  SSP L+ L +    ++ + R+  N          
Sbjct: 364 FYNLKHLELHTGFNKSDVPGLTCLFKSSPTLDTLILKIIHEYRIERKEWNRDLWDMTITE 423

Query: 407 -EESFEPQTTAYEYCFDNLKVVKIKGFRGNENEVALVKSLLENAKILEKMII 255
            E+ +E Q    E    +LKVVKI GF   ENEVAL K LL++ K LE+MI+
Sbjct: 424 GEQYWESQIRTLESFLQHLKVVKIHGFLDYENEVALAKFLLKHGKALEEMIL 475


>ref|XP_003636673.1| F-box family protein [Medicago truncatula]
           gi|355502608|gb|AES83811.1| F-box family protein
           [Medicago truncatula]
          Length = 515

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 14/110 (12%)
 Frame = -3

Query: 548 FSNLNYLKLTAAVNKETVKRVSFVLHSSPKLEFLSI----DFFLRRQGIN---------- 411
           F NL  L+L  ++NK  V+ ++ +  S P L   ++    D+ + R+  N          
Sbjct: 369 FYNLKSLELHTSLNKSNVQALACLFRSCPTLHTFNLEIINDYKIERKLWNRDLWDMTSTE 428

Query: 410 EEESFEPQTTAYEYCFDNLKVVKIKGFRGNENEVALVKSLLENAKILEKM 261
           EE+ +E Q  + +    +LKVVKIKGF    NEV LVK LL++ K LE+M
Sbjct: 429 EEQYWESQIPSLKSFLQHLKVVKIKGFLDCANEVTLVKFLLKHGKGLEEM 478


Top