BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver22_contig00030312
         (1255 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   112   5e-34
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]   103   4e-29
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]   100   6e-29
gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subc...   101   1e-28
gb|ABG00000.1| retrotransposon protein, putative, Ty1-copia subc...   104   2e-28

>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
           gi|531389|gb|AAA57005.1| copia-like retrotransposon
           Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  112 bits (280), Expect(3) = 5e-34
 Identities = 73/218 (33%), Positives = 107/218 (49%)
 Frame = +3

Query: 333 RGYGRGFHLRGGFHSFPTSPFRLXXXXXXXXXXXXXXXXXRVICQICSKIGHISLECYQR 512
           RG GRG   RGGF SF                        R  CQ+CS++GH +L C+ R
Sbjct: 248 RGRGRG-PSRGGFQSFGRG--------NNYSGATDADTSSRPRCQVCSRVGHTALNCWYR 298

Query: 513 MNVSYQGRELPKHMSAILASAKILGENPWYMDSGTTNHLTYNMDDYGASTSYDGSTIISA 692
            + +Y    +P   SA  A+ +     PWY D+G T+H+T ++D       Y G+  I A
Sbjct: 299 FDENY----VPDQRSANSAAHQNGSNVPWYTDTGATDHITGDLDRLTMHDKYTGTDQIIA 354

Query: 693 ANSEGMDISHISDSSFILQDQSFSLKNVFHVPKCVQNLIYVNQFTSVNNCSVTFTPYDYV 872
           AN  GM IS+I ++      +S  L++V HVP   +NLI V++ T+ N+  + F    ++
Sbjct: 355 ANGTGMTISNIGNAIVPTSSRSLHLRSVLHVPSTHKNLISVHRLTNDNDVFIEFHSSHFL 414

Query: 873 AKDILSQKTLFKGISKGGLYPLQCHVHLSATSHTISTT 986
            KD  ++  L  G  + GLYPL  H  L    H  S+T
Sbjct: 415 IKDRQTKAVLLHGKCRDGLYPLPPHPDL-RLKHNFSST 451



 Score = 47.8 bits (112), Expect(3) = 5e-34
 Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
 Frame = +1

Query: 1015 WHKISGHPLFHTMNRVCT--NLPLLVFLHQPLFSSDYKLARVHKQPFMLSSSVSSYPLQL 1188
            WHK  GHP    ++RV +  NLP L              A+ H+ P+ +S S SS PL L
Sbjct: 458  WHKRLGHPSRDIVHRVISNNNLPCLSNNSTTSVCDACLQAKAHQLPYTISMSQSSAPLML 517

Query: 1189 LHLDV*GPSHLVSVSGYKFYVN 1254
            +  DV GP+ + S   YK+YV+
Sbjct: 518  IFSDVFGPA-IDSFGRYKYYVS 538



 Score = 32.3 bits (72), Expect(3) = 5e-34
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +2

Query: 50  SNQLAASRYRISDDELLVTVFCGLGPDYHAFATAITIRYPSVTYAELHSLLLTEE 214
           +++L A+   + D+E +  +  GL  D++   TA+  R   +T  +L++ LL+ E
Sbjct: 154 ADELGAAGKPLDDEEFVSFLLTGLDEDFNPLVTAVVARSDPITPGDLYTQLLSYE 208


>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score =  103 bits (257), Expect(2) = 4e-29
 Identities = 58/171 (33%), Positives = 90/171 (52%), Gaps = 14/171 (8%)
 Frame = +3

Query: 462 CQICSKIGHISLECYQRMNVSYQGRELP----------KHMSAILASAKILGENP----W 599
           CQ+C K GH +  CY R ++S+QG +             ++ A++ASA     NP    W
Sbjct: 289 CQLCGKFGHTAQICYHRFDISFQGGQTTISHSLNNGNQNNIPAMVASAS---NNPADESW 345

Query: 600 YMDSGTTNHLTYNMDDYGASTSYDGSTIISAANSEGMDISHISDSSFILQDQSFSLKNVF 779
           Y+DSG ++HLT N+ +  +++ Y G+  ++  N + + IS+I          SF LK VF
Sbjct: 346 YLDSGASHHLTQNLGNLTSTSPYTGTDKVTIGNGKHLSISNIGSKQLHSHTHSFRLKKVF 405

Query: 780 HVPKCVQNLIYVNQFTSVNNCSVTFTPYDYVAKDILSQKTLFKGISKGGLY 932
           HVP    NLI V +F S NN  + F    +  KD+ ++  L +G  + GLY
Sbjct: 406 HVPFISANLISVAKFCSENNALIEFHSNAFFVKDLHTKMVLAQGKLENGLY 456



 Score = 52.0 bits (123), Expect(2) = 4e-29
 Identities = 24/79 (30%), Positives = 45/79 (56%)
 Frame = +1

Query: 1015 WHKISGHPLFHTMNRVCTNLPLLVFLHQPLFSSDYKLARVHKQPFMLSSSVSSYPLQLLH 1194
            WH   GH  F  +++V     +    ++    SD +LA+ H+ P  LS+  +S PL+L++
Sbjct: 491  WHNRLGHASFDIVSKVMNTCNVASGKYKSFVCSDCQLAKSHRLPTQLSNFHASKPLELVY 550

Query: 1195 LDV*GPSHLVSVSGYKFYV 1251
             D+ GP+ + S SG ++++
Sbjct: 551  TDIWGPASIKSTSGARYFI 569


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score =  100 bits (248), Expect(2) = 6e-29
 Identities = 55/182 (30%), Positives = 90/182 (49%), Gaps = 25/182 (13%)
 Frame = +3

Query: 462 CQICSKIGHISLECYQRMNVSYQGRE----------------------LPKHMSAILASA 575
           CQ+C +IGH+ ++CY R + S+ G                         P   S    +A
Sbjct: 286 CQLCGRIGHVVMQCYYRFDQSFTGPSQLQGNRPQGNMAHLHQQLSEXFFPGTPSVKPTTA 345

Query: 576 KILGENPWYMDSGTTNHLTYNMDDYGASTSYDGSTIISAANSEGMDISHISDSSF---IL 746
           +I+ +N WY DSG T+HLT N+++    + +  S  +   N +G+ I HI  +SF    +
Sbjct: 346 EIIQDNNWYPDSGATHHLTPNLNNLLTKSQFPSSDEVFVGNGKGLPIHHIGHTSFSSSFI 405

Query: 747 QDQSFSLKNVFHVPKCVQNLIYVNQFTSVNNCSVTFTPYDYVAKDILSQKTLFKGISKGG 926
             ++ +LK + HVP+  +NL+ V++F + N+    F P     KD  ++  L  G  KGG
Sbjct: 406 PSKTLALKQLLHVPEITKNLLSVSKFAADNHVFFEFHPTSCFVKDPSTRTVLMHGQLKGG 465

Query: 927 LY 932
           LY
Sbjct: 466 LY 467



 Score = 55.1 bits (131), Expect(2) = 6e-29
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
 Frame = +1

Query: 931  IHYNVMFISQLLHIPSPLLCHVPRFPI-FWHKISGHPLFHTMNRVCT--NLPLLVFLHQP 1101
            +H +  F S  L    P +   P  P   WH   GHP  H ++ V    NLP L  +   
Sbjct: 478  LHNSSCFASTALPSKEPTVPASPTSPFTLWHNRLGHPSSHIVSLVLNKCNLPHLNKIPS- 536

Query: 1102 LFSSDYKLARVHKQPFMLSSSVSSYPLQLLHLDV*GPSHLVSVSGYKFYVN 1254
            L  S   + ++HK  F+ S+S  + PL+L+H D+ GP+   S  G+++Y++
Sbjct: 537  LICSXCCMGKIHKSSFLHSTSSYTKPLELIHTDLWGPASTPSSHGHQYYIH 587


>gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1241

 Score =  101 bits (251), Expect(2) = 1e-28
 Identities = 55/162 (33%), Positives = 85/162 (52%)
 Frame = +3

Query: 453 RVICQICSKIGHISLECYQRMNVSYQGRELPKHMSAILASAKILGENPWYMDSGTTNHLT 632
           R ICQ+C K GH++ EC+ R + +Y    +P   SA  A+A  +  N WY+D+G T+H+T
Sbjct: 267 RPICQVCLKRGHVAAECWHRYDETY----VPDERSAAAAAAYGIDTN-WYLDTGATDHIT 321

Query: 633 YNMDDYGASTSYDGSTIISAANSEGMDISHISDSSFILQDQSFSLKNVFHVPKCVQNLIY 812
             +D       Y G   I  A+  GM+I HI DS      +   LKN+ HVP+  +NLI 
Sbjct: 322 NELDKLDVREKYKGGDKIHTASGAGMEIKHIGDSVIHTPTRELHLKNILHVPQAKKNLIS 381

Query: 813 VNQFTSVNNCSVTFTPYDYVAKDILSQKTLFKGISKGGLYPL 938
            ++    N   +      ++ KD +++ T+ KG  +  LY L
Sbjct: 382 AHRLAMDNFAFLEVHSNYFLIKDRVTRNTILKGRCRRRLYSL 423



 Score = 52.8 bits (125), Expect(2) = 1e-28
 Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
 Frame = +1

Query: 991  HVPRFPIF--WHKISGHPLFHTMNRVCT--NLPLLVFLHQPLFSSDYKLARVHKQPFMLS 1158
            H    P F  WH   GHP    + RV +  NLP     ++       +  + H+ P+  S
Sbjct: 432  HAATTPSFSRWHSRLGHPAVPIVTRVLSKNNLPCSTVANKDSICDACQKGKSHQLPYPKS 491

Query: 1159 SSVSSYPLQLLHLDV*GPSHLVSVSGYKFY 1248
            SSVSS PL+L+  DV GP+  +SV G KFY
Sbjct: 492  SSVSSQPLELIFSDVWGPAP-ISVGGKKFY 520


>gb|ABG00000.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2074

 Score =  104 bits (260), Expect(2) = 2e-28
 Identities = 55/162 (33%), Positives = 85/162 (52%)
 Frame = +3

Query: 453  RVICQICSKIGHISLECYQRMNVSYQGRELPKHMSAILASAKILGENPWYMDSGTTNHLT 632
            R  CQ+C KIGH+  +C+ R + ++    +P   +A  AS  +  +  WYMD+G T+H+T
Sbjct: 1239 RSTCQLCGKIGHVVADCWYRYDENF----IPDSKTAAAASYGV--DTNWYMDTGATDHIT 1292

Query: 633  YNMDDYGASTSYDGSTIISAANSEGMDISHISDSSFILQDQSFSLKNVFHVPKCVQNLIY 812
              +D       Y+G   I  A+  GMDI H+  S       +  LKN+ HVPK  +NLI 
Sbjct: 1293 GELDKLTTHEKYNGKEQIHTASGAGMDIKHVGHSIIHTPICNIQLKNILHVPKAEKNLIS 1352

Query: 813  VNQFTSVNNCSVTFTPYDYVAKDILSQKTLFKGISKGGLYPL 938
             ++    N+  V   P  +  KD +++  L +G  + GLYPL
Sbjct: 1353 AHRLAVDNHAFVEVHPRFFAIKDQVTKNLLLRGPCRNGLYPL 1394



 Score = 48.5 bits (114), Expect(2) = 2e-28
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
 Frame = +1

Query: 1015 WHKISGHPLFHTMNRVCT--NLPLLVFLHQPLFSSDYKLARVHKQPFMLSSSVSSYPLQL 1188
            WH   GHP    + +V +  NLP L  +++    +  + A+ H+ P+  S SVS+ PL+L
Sbjct: 1416 WHSRLGHPSLAIVQKVVSSNNLPCLGDVNESGVCNACQQAKSHQLPYPKSFSVSNNPLEL 1475

Query: 1189 LHLDV*GPSHLVSVSGYKFYVN 1254
            +  DV GP+   SV G K+YV+
Sbjct: 1476 VFSDVWGPAP-TSVGGRKYYVS 1496