BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver22_contig00029768
         (524 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||A05030 rpoC protein homolog - common tobacco chloroplast         211   4e-53
prf||1211235P rpoC-like ORF 236                                       211   7e-53
emb|CBI36146.3| unnamed protein product [Vitis vinifera]              206   1e-51
ref|XP_004174090.1| PREDICTED: DNA-directed RNA polymerase subun...   201   4e-50
emb|CAN83637.1| hypothetical protein VITISV_032940 [Vitis vinifera]   193   1e-47

>pir||A05030 rpoC protein homolog - common tobacco chloroplast
          Length = 236

 Score =  211 bits (538), Expect = 4e-53
 Identities = 109/133 (81%), Positives = 117/133 (87%)
 Frame = +2

Query: 104 LYDTRGNSGLFDSTSIIIPECIHDARSRKGSLRITDSNLLSNPTQRNMEVLMAERADLVF 283
           +YDTRG SGL  S   I+PE I ++RS KGS  ITDSN LSN TQRNMEVLMAERA+LVF
Sbjct: 1   MYDTRGTSGLSGSARSIVPEFIRESRSIKGSFTITDSNPLSNSTQRNMEVLMAERANLVF 60

Query: 284 HNKAIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFHQATATSISLGIDDLLTIPSKG 463
           HNKAI+GTA+KRLISRLIDHFGMAYTSHILDQVKTLGF QATATSISLGIDDLLTIPSKG
Sbjct: 61  HNKAINGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKG 120

Query: 464 WLVQDAEQRKYIL 502
           WLVQDAEQ+  IL
Sbjct: 121 WLVQDAEQQSLIL 133


>prf||1211235P rpoC-like ORF 236
          Length = 236

 Score =  211 bits (536), Expect = 7e-53
 Identities = 109/132 (82%), Positives = 116/132 (87%)
 Frame = +2

Query: 107 YDTRGNSGLFDSTSIIIPECIHDARSRKGSLRITDSNLLSNPTQRNMEVLMAERADLVFH 286
           YDTRG SGL  S   I+PE I ++RS KGS  ITDSN LSN TQRNMEVLMAERA+LVFH
Sbjct: 2   YDTRGTSGLSGSARSIVPEFIRESRSIKGSFTITDSNPLSNSTQRNMEVLMAERANLVFH 61

Query: 287 NKAIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFHQATATSISLGIDDLLTIPSKGW 466
           NKAI+GTA+KRLISRLIDHFGMAYTSHILDQVKTLGF QATATSISLGIDDLLTIPSKGW
Sbjct: 62  NKAINGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGW 121

Query: 467 LVQDAEQRKYIL 502
           LVQDAEQ+  IL
Sbjct: 122 LVQDAEQQSLIL 133


>emb|CBI36146.3| unnamed protein product [Vitis vinifera]
          Length = 510

 Score =  206 bits (525), Expect = 1e-51
 Identities = 113/163 (69%), Positives = 118/163 (72%)
 Frame = +2

Query: 2   YIRTTVGHISFYREIEEAIQGFCRASSYGT*VN*LYDTRGNSGLFDSTSIIIPECIHDAR 181
           YIRTTVGHIS YREIEEAIQGFCRA                                  R
Sbjct: 133 YIRTTVGHISLYREIEEAIQGFCRA----------------------------------R 158

Query: 182 SRKGSLRITDSNLLSNPTQRNMEVLMAERADLVFHNKAIDGTAIKRLISRLIDHFGMAYT 361
           SRKGS   TDSN LSN TQ+NM VLM ER +LVFHNK IDGTA+KRLISRLIDHFGMAYT
Sbjct: 159 SRKGSFTTTDSNPLSNLTQQNMGVLMTERVNLVFHNKVIDGTAMKRLISRLIDHFGMAYT 218

Query: 362 SHILDQVKTLGFHQATATSISLGIDDLLTIPSKGWLVQDAEQR 490
           SHILDQVKTLGF Q+TATSISLGIDDLLTIPSKGWLVQDAEQ+
Sbjct: 219 SHILDQVKTLGFQQSTATSISLGIDDLLTIPSKGWLVQDAEQQ 261


>ref|XP_004174090.1| PREDICTED: DNA-directed RNA polymerase subunit beta''-like [Cucumis
           sativus]
          Length = 326

 Score =  201 bits (512), Expect = 4e-50
 Identities = 105/127 (82%), Positives = 111/127 (87%)
 Frame = +2

Query: 122 NSGLFDSTSIIIPECIHDARSRKGSLRITDSNLLSNPTQRNMEVLMAERADLVFHNKAID 301
           N  L  ST  I PE + ++RSRKGS  I +SNLLSNPTQRNMEVLMAERADLVFHNK ID
Sbjct: 2   NFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAERADLVFHNKVID 61

Query: 302 GTAIKRLISRLIDHFGMAYTSHILDQVKTLGFHQATATSISLGIDDLLTIPSKGWLVQDA 481
           GTAIKRLISRLIDHFGMAYTSHILDQ+KTLGF QATATSISLGIDDLLTIPSKGWLVQDA
Sbjct: 62  GTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDA 121

Query: 482 EQRKYIL 502
           EQ+  IL
Sbjct: 122 EQQSLIL 128


>emb|CAN83637.1| hypothetical protein VITISV_032940 [Vitis vinifera]
          Length = 203

 Score =  193 bits (491), Expect = 1e-47
 Identities = 99/118 (83%), Positives = 105/118 (88%)
 Frame = +2

Query: 149 IIIPECIHDARSRKGSLRITDSNLLSNPTQRNMEVLMAERADLVFHNKAIDGTAIKRLIS 328
           II+ E + +ARSRKGS   TDSN LSNPTQRNM VLM ERA+LVFHNK IDGTA+KRLIS
Sbjct: 75  IIVLEFLREARSRKGSFTTTDSNPLSNPTQRNMGVLMTERANLVFHNKVIDGTAMKRLIS 134

Query: 329 RLIDHFGMAYTSHILDQVKTLGFHQATATSISLGIDDLLTIPSKGWLVQDAEQRKYIL 502
           RLIDHFGMAYTSHILDQVKTLGF QATATSISLGIDDLLTIPSKGWLVQDAEQ+  IL
Sbjct: 135 RLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLIL 192