BLASTX nr result

ID: Papaver22_contig00027916 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver22_contig00027916
         (604 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272597.2| PREDICTED: double-stranded RNA-binding prote...    69   6e-10
ref|XP_002302963.1| predicted protein [Populus trichocarpa] gi|2...    59   9e-07
ref|XP_003572154.1| PREDICTED: double-stranded RNA-binding prote...    58   1e-06
ref|XP_002532469.1| double-stranded RNA binding protein, putativ...    57   3e-06

>ref|XP_002272597.2| PREDICTED: double-stranded RNA-binding protein 4-like [Vitis
           vinifera] gi|296087161|emb|CBI33535.3| unnamed protein
           product [Vitis vinifera]
          Length = 333

 Score = 68.9 bits (167), Expect = 6e-10
 Identities = 38/61 (62%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
 Frame = -2

Query: 180 RKDTLSYKSILNEYAVKMNHPVLAYTTTQAEPH-SFFISSLVFNGKTYTGPAARNKKDAE 4
           R+DT+  KSILNE+AVKMN     YTT Q E     F+SSLVFNG TYTG A RNKK+AE
Sbjct: 102 REDTVFCKSILNEFAVKMNLEKPTYTTVQPEGLLPVFVSSLVFNGVTYTGDAGRNKKEAE 161

Query: 3   R 1
           +
Sbjct: 162 Q 162


>ref|XP_002302963.1| predicted protein [Populus trichocarpa] gi|222844689|gb|EEE82236.1|
           predicted protein [Populus trichocarpa]
          Length = 452

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
 Frame = -2

Query: 174 DTLSYKSILNEYAVKMNHPVLAYTTTQAEPH-SFFISSLVFNGKTYTGPAARNKKDAER 1
           DT+  KSILNE+AVK+N     Y T Q+      FIS+LVF+G +YTG A RNKK+AE+
Sbjct: 221 DTVFCKSILNEFAVKVNREKPTYNTVQSPGLLPVFISTLVFDGVSYTGDAGRNKKEAEQ 279


>ref|XP_003572154.1| PREDICTED: double-stranded RNA-binding protein 4-like [Brachypodium
           distachyon]
          Length = 281

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 32/62 (51%), Positives = 42/62 (67%), Gaps = 3/62 (4%)
 Frame = -2

Query: 177 KDTLSYKSILNEYAVKMNHPVLAYTTTQAE---PHSFFISSLVFNGKTYTGPAARNKKDA 7
           +D L  KSILNE+AVK       Y+  + +   P S F+SS+VF+GKTYTG AA +KKDA
Sbjct: 116 QDVLFCKSILNEFAVKTKATQPKYSVDRPQGVSPISLFVSSVVFDGKTYTGEAAVSKKDA 175

Query: 6   ER 1
           E+
Sbjct: 176 EQ 177


>ref|XP_002532469.1| double-stranded RNA binding protein, putative [Ricinus communis]
           gi|223527827|gb|EEF29925.1| double-stranded RNA binding
           protein, putative [Ricinus communis]
          Length = 289

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 31/60 (51%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
 Frame = -2

Query: 177 KDTLSYKSILNEYAVKMNHPVLAYTTT-QAEPHSFFISSLVFNGKTYTGPAARNKKDAER 1
           +DT++ KSILNEYAVKM   +  Y T  Q      F+SS VFNG TY G   R KK+AE+
Sbjct: 96  EDTVACKSILNEYAVKMQLEMPTYNTVKQGGLFPIFVSSSVFNGVTYNGDIGRTKKEAEQ 155


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