BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver22_contig00027507
         (402 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003518031.1| PREDICTED: pentatricopeptide repeat-containi...    74   1e-11
ref|XP_003535844.1| PREDICTED: pentatricopeptide repeat-containi...    70   1e-10
ref|XP_003624990.1| Pentatricopeptide repeat-containing protein ...    67   2e-09
ref|NP_178143.1| pentatricopeptide repeat-containing protein [Ar...    65   4e-09
ref|XP_002890106.1| DNA binding protein [Arabidopsis lyrata subs...    63   2e-08

>ref|XP_003518031.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Glycine max]
          Length = 609

 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 46/133 (34%), Positives = 74/133 (55%), Gaps = 4/133 (3%)
 Frame = -3

Query: 388 LKILGYNPKKEEDDGEDPRDGLSELENPPKAEEDPEEVRS----AHFNLFYLISSAHSRN 221
           L+I G N + + D  ++  DG   ++    ++ DP + +S        LF  I++A   +
Sbjct: 98  LEIQGSNDESDADLSDEDEDGGKPVDEMDLSDADPTKKKSQGRRTQSELFKAIANAPGLS 157

Query: 220 LYASLDKFIEQIKALEHAEIREVLRKLSRRQMYELAYQLSNWLEMKNLFTFEEEGDYATR 41
           + ++L+K++E  K L   EI   +R+L RR+MY  A+QL  WLE      F  E DYA++
Sbjct: 158 VDSALNKWVEHGKELSRKEILLAVRELRRRKMYGRAFQLFQWLESNKKLEF-MESDYASQ 216

Query: 40  LDLIAKVSGMALA 2
           LDLIAK+ G+  A
Sbjct: 217 LDLIAKLRGLPKA 229


>ref|XP_003535844.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Glycine max]
          Length = 600

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 54/139 (38%), Positives = 74/139 (53%), Gaps = 10/139 (7%)
 Frame = -3

Query: 388 LKILGYNPKKEED------DGEDPRDGLSELENPPKAEEDP----EEVRSAHFNLFYLIS 239
           L+I G N + + D      DGE P D L EL +   AE DP     + R     LF +I 
Sbjct: 87  LEIHGSNDESDADLSDGDEDGEKPHDEL-ELSD---AEIDPTKKKSQARWTQLKLFKVIL 142

Query: 238 SAHSRNLYASLDKFIEQIKALEHAEIREVLRKLSRRQMYELAYQLSNWLEMKNLFTFEEE 59
           +A   ++ ++L K+  Q K L   EI   +R+L RR+MY  A+QL  WLE      F  E
Sbjct: 143 NAPGLSVDSALSKWAGQGKELSRKEIFLAVRELRRRKMYGRAFQLFQWLESNKKLEF-ME 201

Query: 58  GDYATRLDLIAKVSGMALA 2
            DYA++LDLIAK+ G+  A
Sbjct: 202 SDYASQLDLIAKLRGLPQA 220


>ref|XP_003624990.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355500005|gb|AES81208.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 623

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 53/162 (32%), Positives = 67/162 (41%), Gaps = 40/162 (24%)
 Frame = -3

Query: 376 GYNPKKEEDDGEDPRDGLSELENP--------------PKAEEDPEEVRSAH-------- 263
           G    KEEDD  D  DG SELE P                 E D  E+   H        
Sbjct: 82  GAKTTKEEDD--DLEDGFSELETPLGEESEKGVVSDSEDSDESDESEITGPHNELELPLS 139

Query: 262 ------------------FNLFYLISSAHSRNLYASLDKFIEQIKALEHAEIREVLRKLS 137
                               LF  I +     +Y +L+K++E  K L   EI   +  L 
Sbjct: 140 HDVDEVSTGKRSSRKRADSELFKAIMNGTGPTIYTALEKWVEDGKELSREEISLTMINLR 199

Query: 136 RRQMYELAYQLSNWLEMKNLFTFEEEGDYATRLDLIAKVSGM 11
           RR++Y  A QLS WLE K    F E  DYA++LDLIAK+ G+
Sbjct: 200 RRKIYLKALQLSEWLESKKHLEFVER-DYASQLDLIAKLHGL 240


>ref|NP_178143.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|42572199|ref|NP_974190.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|145327755|ref|NP_001077853.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|75262222|sp|Q9C977.1|PP135_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g80270, mitochondrial; Flags: Precursor
           gi|12324975|gb|AAG52431.1|AC018848_2 hypothetical
           protein; 8785-10851 [Arabidopsis thaliana]
           gi|17064898|gb|AAL32603.1| Unknown protein [Arabidopsis
           thaliana] gi|20259918|gb|AAM13306.1| unknown protein
           [Arabidopsis thaliana] gi|332198258|gb|AEE36379.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana] gi|332198259|gb|AEE36380.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|332198260|gb|AEE36381.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 51/158 (32%), Positives = 71/158 (44%), Gaps = 28/158 (17%)
 Frame = -3

Query: 400 HRNLLKILGYNPKKEEDDGEDPRDGLSELENPPK---------------AEEDPEE---- 278
           +R L    G    +EEDD ED   G SELE                   A+E+ EE    
Sbjct: 59  NRALSSSAGTKSDQEEDDLED---GFSELEGSKSGQGSTSSDEDEGKLSADEEEEEELDL 115

Query: 277 ---------VRSAHFNLFYLISSAHSRNLYASLDKFIEQIKALEHAEIREVLRKLSRRQM 125
                    V      LF  I SA   ++ ++LDK++E+   +   EI + + +L RR+M
Sbjct: 116 IETDVSRKTVEKKQSELFKTIVSAPGLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRM 175

Query: 124 YELAYQLSNWLEMKNLFTFEEEGDYATRLDLIAKVSGM 11
           Y  A Q+S WLE        E  DYA+RLDL  K+ G+
Sbjct: 176 YGRALQMSEWLEANKKIEMTER-DYASRLDLTVKIRGL 212


>ref|XP_002890106.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
           gi|297335948|gb|EFH66365.1| DNA binding protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 594

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 18/147 (12%)
 Frame = -3

Query: 397 RNLLKILGYNPKKEEDDGED-------PRDGLSELENPPKAEEDPEEVRSAHFNL----- 254
           R+L    G     +EDD ED       P +  S  E+  +   D  ++  A   L     
Sbjct: 65  RSLSSDAGAKTTGDEDDLEDKNLDIATPNETSSNSEDDEEFSGDEGDIEGAELELHVPAS 124

Query: 253 ------FYLISSAHSRNLYASLDKFIEQIKALEHAEIREVLRKLSRRQMYELAYQLSNWL 92
                 F  I S    ++ ++LDK++EQ K     E    + +L +R+MY  A Q++ WL
Sbjct: 125 KRPSELFKAIVSVSGLSVGSALDKWVEQGKDTSRTEFASAMLQLRKRRMYGRALQMTEWL 184

Query: 91  EMKNLFTFEEEGDYATRLDLIAKVSGM 11
           +    F  +E  DYA+RLDLI+KV G+
Sbjct: 185 DDNKQFEMKER-DYASRLDLISKVRGL 210