BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver22_contig00024257
         (1058 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284465.1| PREDICTED: general transcription factor IIH ...   419   e-115
ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|2...   397   e-108
ref|XP_004152842.1| PREDICTED: general transcription factor IIH ...   393   e-107
ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arab...   391   e-106
ref|NP_564050.1| transcription initiation factor TFIIH subunit H...   390   e-106

>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
           vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
           product [Vitis vinifera]
          Length = 297

 Score =  419 bits (1078), Expect = e-115
 Identities = 212/298 (71%), Positives = 233/298 (78%)
 Frame = +2

Query: 50  MDSAPSKQYSDDVSLVMVLLDTNPFFWGGENTTTKVSFSNFLNHVISFLNSXXXXXXXXX 229
           M   PSK YSDDVSL++VLLDTNPFFW    +T  + FS FL+HV++FLNS         
Sbjct: 1   MAPVPSKLYSDDVSLLVVLLDTNPFFW----STASLPFSKFLSHVLAFLNSILLINQLNQ 56

Query: 230 XXXIATGYNSCDYIFDSSTSESLNVSSGNGKMPALCSKMLQKLEEFVIRDEQLSKENSPS 409
              IATG NSC++IFDSS S   N +  NG+MPALCS +LQKLEEFV  DE+LSKE   +
Sbjct: 57  VVVIATGCNSCNFIFDSS-SVPANPNLENGRMPALCSNLLQKLEEFVTGDEKLSKEVLAA 115

Query: 410 GIVXXXXXXXXXXXXCYIQKVLRSGRLHPNPRILCLQGSPDGPEQYVAVMNAIFSAQRSM 589
           GI             CYIQ+V R+G LHP PRILCLQGSPDGPEQYVAVMNAIFSAQRSM
Sbjct: 116 GIGSSLLSGSLSMALCYIQRVFRTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSM 175

Query: 590 VPIDSCIVGVQHSAFLQQASYITGGVYLKPPQLDGLFQYLSTVFATDLHSRSFLQLPKPV 769
           VPIDSC++G QHSAFLQQASYITGGVYLKP QLDGLFQYLSTVFATDLHSR FLQLPKP 
Sbjct: 176 VPIDSCVIGAQHSAFLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKPA 235

Query: 770 GVDFRASCFCHKSTIDLGYICSVCLSIFCKQHKKCSTCGSVFGQANPEVKLPTDRKRK 943
           GVDFRASCFCHK+TID+GYICSVCLSIFCK HKKCSTCGSVFGQA  +    TDRKRK
Sbjct: 236 GVDFRASCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQAQSDGNSATDRKRK 293


>ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|222856878|gb|EEE94425.1|
           predicted protein [Populus trichocarpa]
          Length = 289

 Score =  397 bits (1019), Expect = e-108
 Identities = 196/290 (67%), Positives = 227/290 (78%)
 Frame = +2

Query: 77  SDDVSLVMVLLDTNPFFWGGENTTTKVSFSNFLNHVISFLNSXXXXXXXXXXXXIATGYN 256
           +DDVSLV+VLLDTNPFFW      + +SFS FL+HV++F+NS            IA+GYN
Sbjct: 1   ADDVSLVVVLLDTNPFFW---TPPSSLSFSQFLSHVLAFVNSILLLNQLNQVVVIASGYN 57

Query: 257 SCDYIFDSSTSESLNVSSGNGKMPALCSKMLQKLEEFVIRDEQLSKENSPSGIVXXXXXX 436
           +CDYI+DSS S++  + S +G+MP+L S +LQKLEEF+I+DE+L KE S   I       
Sbjct: 58  TCDYIYDSS-SDASQLGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSSLLSG 116

Query: 437 XXXXXXCYIQKVLRSGRLHPNPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCIVG 616
                 CYIQ+V RSG LHP PRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSC VG
Sbjct: 117 SLSMALCYIQRVFRSGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVG 176

Query: 617 VQHSAFLQQASYITGGVYLKPPQLDGLFQYLSTVFATDLHSRSFLQLPKPVGVDFRASCF 796
             +SAFLQQASYITGGVY+KP  LDGLFQYL+TVFATDLHSRSF+QLP+P GVDFRASCF
Sbjct: 177 AHNSAFLQQASYITGGVYVKPQHLDGLFQYLTTVFATDLHSRSFIQLPRPAGVDFRASCF 236

Query: 797 CHKSTIDLGYICSVCLSIFCKQHKKCSTCGSVFGQANPEVKLPTDRKRKA 946
           CHK+TID+GYICSVCLSIFC  HKKCSTCGSVFGQA  +    +D KRKA
Sbjct: 237 CHKTTIDMGYICSVCLSIFCNHHKKCSTCGSVFGQAQSDTSSTSDLKRKA 286


>ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
           sativus]
          Length = 295

 Score =  393 bits (1009), Expect = e-107
 Identities = 195/298 (65%), Positives = 228/298 (76%)
 Frame = +2

Query: 50  MDSAPSKQYSDDVSLVMVLLDTNPFFWGGENTTTKVSFSNFLNHVISFLNSXXXXXXXXX 229
           M SAPSK Y+DDVSL++VLLDTNPFFW    +T+ + FS FL+HV++FLNS         
Sbjct: 1   MASAPSKLYADDVSLLVVLLDTNPFFW----STSALPFSKFLSHVLAFLNSILVLNQLNE 56

Query: 230 XXXIATGYNSCDYIFDSSTSESLNVSSGNGKMPALCSKMLQKLEEFVIRDEQLSKENSPS 409
              I TGY SC Y+++SS+  +  +   +G+MPALC+++L+ LEEFVI DEQ  KE+   
Sbjct: 57  VVVIGTGYASCKYLYNSSSYSNHGLE--DGRMPALCTRLLKNLEEFVIGDEQSIKEDPKG 114

Query: 410 GIVXXXXXXXXXXXXCYIQKVLRSGRLHPNPRILCLQGSPDGPEQYVAVMNAIFSAQRSM 589
           G +            CYIQKV RSG LHP PRILCLQGSPDGPEQYVA+MNAIFSAQRSM
Sbjct: 115 GTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSM 174

Query: 590 VPIDSCIVGVQHSAFLQQASYITGGVYLKPPQLDGLFQYLSTVFATDLHSRSFLQLPKPV 769
           VPIDSC +G  +SAFLQQASYITGGVYLKP Q+DGLFQYLSTVF TDLHSR+FLQLPK V
Sbjct: 175 VPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSV 234

Query: 770 GVDFRASCFCHKSTIDLGYICSVCLSIFCKQHKKCSTCGSVFGQANPEVKLPTDRKRK 943
           GVDFRASCFCHK TID+GY+CSVCLSIFCK HKKCSTCGSVFG+   E+   +  KRK
Sbjct: 235 GVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSVSKLKRK 292


>ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
           lyrata] gi|297338839|gb|EFH69256.1| hypothetical protein
           ARALYDRAFT_472054 [Arabidopsis lyrata subsp. lyrata]
          Length = 301

 Score =  391 bits (1005), Expect = e-106
 Identities = 198/302 (65%), Positives = 232/302 (76%), Gaps = 3/302 (0%)
 Frame = +2

Query: 50  MDSAPSKQYSDDVSLVMVLLDTNPFFWGGENTTTKVSFSNFLNHVISFLNSXXXXXXXXX 229
           M S  SKQYSDDVSL+++LLDTNP FW    +TT ++FS FL+HV++FLN+         
Sbjct: 1   MPSVVSKQYSDDVSLLVLLLDTNPLFW----STTSITFSQFLSHVLAFLNAVLGLNQLNQ 56

Query: 230 XXXIATGYNSCDYIFDSS-TSESLNVSSGNGKMPALCSKMLQKLEEFVIRDEQLSKEN-S 403
              IATGY+SCDYI+DSS TS   N+ S    MPAL   +L+KLE+FV +DE+LS+E  S
Sbjct: 57  VVVIATGYSSCDYIYDSSLTSNHGNLESNGTGMPALFGSLLKKLEDFVTKDEELSREEVS 116

Query: 404 PSGIVXXXXXXXXXXXXCYIQKVLRSGRLHPNPRILCLQGSPDGPEQYVAVMNAIFSAQR 583
              I             CYIQ+V RSG LHP PRILCLQGSPDGPEQYVAVMN+IFSAQR
Sbjct: 117 EDRIPSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQR 176

Query: 584 SMVPIDSCIVGVQHSAFLQQASYITGGVYLKPPQLDGLFQYLSTVFATDLHSRSFLQLPK 763
            MVPIDSC +GVQ+SAFLQQASYITGGV+  P QLDGLFQYL+T+FATDLHSRSF+QLPK
Sbjct: 177 LMVPIDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRSFVQLPK 236

Query: 764 PVGVDFRASCFCHKSTIDLGYICSVCLSIFCKQHKKCSTCGSVFGQAN-PEVKLPTDRKR 940
           P+GVDFRASCFCHK TID+GYICSVCLSIFC+ HKKCSTCGSVFGQ+   +    +D+KR
Sbjct: 237 PIGVDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLDDASSVSDKKR 296

Query: 941 KA 946
           KA
Sbjct: 297 KA 298


>ref|NP_564050.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis
           thaliana] gi|21537277|gb|AAM61618.1| unknown
           [Arabidopsis thaliana] gi|92856638|gb|ABE77412.1|
           At1g18340 [Arabidopsis thaliana]
           gi|332191584|gb|AEE29705.1| transcription initiation
           factor TFIIH subunit H3 [Arabidopsis thaliana]
          Length = 301

 Score =  390 bits (1001), Expect = e-106
 Identities = 197/302 (65%), Positives = 230/302 (76%), Gaps = 3/302 (0%)
 Frame = +2

Query: 50  MDSAPSKQYSDDVSLVMVLLDTNPFFWGGENTTTKVSFSNFLNHVISFLNSXXXXXXXXX 229
           M +  SKQYSDDVSL+++LLDTNP FW    +TT ++FS FL+HV++FLN+         
Sbjct: 1   MPAIASKQYSDDVSLLVLLLDTNPLFW----STTSITFSQFLSHVLAFLNAVLGLNQLNQ 56

Query: 230 XXXIATGYNSCDYIFDSS-TSESLNVSSGNGKMPALCSKMLQKLEEFVIRDEQLSKEN-S 403
              IATGY+SCDYI+DSS TS   N  S    MPA+   +L+KLEEFV +DE+LSKE  S
Sbjct: 57  VVVIATGYSSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVS 116

Query: 404 PSGIVXXXXXXXXXXXXCYIQKVLRSGRLHPNPRILCLQGSPDGPEQYVAVMNAIFSAQR 583
              I             CYIQ+V RSG LHP PRILCLQGSPDGPEQYVAVMN+IFSAQR
Sbjct: 117 EDRIPSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQR 176

Query: 584 SMVPIDSCIVGVQHSAFLQQASYITGGVYLKPPQLDGLFQYLSTVFATDLHSRSFLQLPK 763
            MVPIDSC +GVQ+SAFLQQASYITGGV+  P QLDGLFQYL+T+FATDLHSR F+QLPK
Sbjct: 177 LMVPIDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPK 236

Query: 764 PVGVDFRASCFCHKSTIDLGYICSVCLSIFCKQHKKCSTCGSVFGQAN-PEVKLPTDRKR 940
           P+GVDFRASCFCHK TID+GYICSVCLSIFC+ HKKCSTCGSVFGQ+   +    +D+KR
Sbjct: 237 PIGVDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLDDASSASDKKR 296

Query: 941 KA 946
           KA
Sbjct: 297 KA 298