BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver22_contig00024152
         (1247 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFV74904.1| RNA polymerase II second largest subunit, partial...    70   1e-09
gb|AAB94061.1| RPB140 [Magnolia virginiana]                            69   2e-09
gb|AAY89344.1| RNA polymerase II second largest subunit [Petunia...    69   2e-09
dbj|BAG72319.1| RNA polymerase II second largest subunit [Actino...    69   3e-09
emb|CAD89598.1| RNA polymerase II, second largest subunit [Borag...    68   4e-09

>gb|AFV74904.1| RNA polymerase II second largest subunit, partial [Viscum
            alniformosanae]
          Length = 569

 Score = 69.7 bits (169), Expect = 1e-09
 Identities = 55/146 (37%), Positives = 67/146 (45%), Gaps = 8/146 (5%)
 Frame = +1

Query: 814  QG*VFHNKQCDHNNSMRHNEIGIR*PME*IR*IYTCK*ANXXXXXXXXXWMRSVRIYQIG 993
            QG  F   + DH+ S+RH+E GI   +     + T    N          +RSVRI QIG
Sbjct: 365  QGQSFRYTKRDHSTSLRHSETGIVDQV-----LLT---TNADGLRFVKVRVRSVRIPQIG 416

Query: 994  GKFSGRHGLKRTVGMTCTEEDIPW*RQHPRYHCESTFXXXXXXXXXXXDSST-------- 1149
             KFS RHG K TVGMT T+ED+PW         E                 T        
Sbjct: 417  DKFSSRHGQKGTVGMTYTQEDMPW-------TVEGITPDIIVNPHAIPSRMTIGQLIECI 469

Query: 1150 MRKVADHMGNEGDATSFSWLYLFNFS 1227
            M KVA HMG EGDAT F+ + + N S
Sbjct: 470  MGKVAAHMGKEGDATPFTDVTVDNIS 495


>gb|AAB94061.1| RPB140 [Magnolia virginiana]
          Length = 555

 Score = 69.3 bits (168), Expect = 2e-09
 Identities = 53/140 (37%), Positives = 68/140 (48%), Gaps = 1/140 (0%)
 Frame = +1

Query: 811  LQG*VFHNKQCDHNNSMRHNEIGIR*PME*IR*IYTCK*ANXXXXXXXXXWMRSVRIYQI 990
            +QG V    + DH+ S+RH+E G+   +     + T    N          MRSVRI QI
Sbjct: 376  VQGQVTRYTRRDHSTSLRHSESGMVDQV-----LLT---TNADGLRFVKVRMRSVRIPQI 427

Query: 991  GGKFSGRHGLKRTVGMTCTEEDIPW*RQHPRYH-CESTFXXXXXXXXXXXDSSTMRKVAD 1167
            G KFS RHG K TVGMT T+ED+PW  +        +                 M KVA 
Sbjct: 428  GDKFSSRHGQKGTVGMTYTQEDMPWTPEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 487

Query: 1168 HMGNEGDATSFSWLYLFNFS 1227
            HMG EGDAT F+ + + N S
Sbjct: 488  HMGKEGDATPFTDVTVDNIS 507


>gb|AAY89344.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1203

 Score = 69.3 bits (168), Expect = 2e-09
 Identities = 50/129 (38%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
 Frame = +1

Query: 844  DHNNSMRHNEIGIR*PME*IR*IYTCK*ANXXXXXXXXXWMRSVRIYQIGGKFSGRHGLK 1023
            DH+ S+RH+E GI   +     + T    N          MRSVRI QIG KFS RHG K
Sbjct: 910  DHSTSLRHSETGIVDQV-----LLT---TNADGLRFVKIRMRSVRIPQIGDKFSSRHGQK 961

Query: 1024 RTVGMTCTEEDIPW*RQHPRYH-CESTFXXXXXXXXXXXDSSTMRKVADHMGNEGDATSF 1200
             T+GMT T+ED+PW  +        +                 M KVA HMG EGDAT F
Sbjct: 962  GTIGMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLVECVMGKVAAHMGKEGDATPF 1021

Query: 1201 SWLYLFNFS 1227
            + + + N S
Sbjct: 1022 TDVTVDNIS 1030


>dbj|BAG72319.1| RNA polymerase II second largest subunit [Actinodaphne malaccensis]
          Length = 167

 Score = 68.6 bits (166), Expect = 3e-09
 Identities = 49/121 (40%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
 Frame = +1

Query: 844  DHNNSMRHNEIGIR*PME*IR*IYTCK*ANXXXXXXXXXWMRSVRIYQIGGKFSGRHGLK 1023
            DH+ S+RH+EIG+   +     + T    N          MRSVRI QIG KFS RHG K
Sbjct: 52   DHSTSLRHSEIGMVDQV-----LLT---TNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 103

Query: 1024 RTVGMTCTEEDIPW*RQHPRYH-CESTFXXXXXXXXXXXDSSTMRKVADHMGNEGDATSF 1200
             TVGMT T+ED+PW  +        +                 M KVA HMG EGDAT F
Sbjct: 104  GTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 163

Query: 1201 S 1203
            +
Sbjct: 164  T 164


>emb|CAD89598.1| RNA polymerase II, second largest subunit [Borago officinalis]
          Length = 355

 Score = 68.2 bits (165), Expect = 4e-09
 Identities = 53/136 (38%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
 Frame = +1

Query: 844  DHNNSMRHNEIGIR*PME*IR*IYTCK*ANXXXXXXXXXWMRSVRIYQIGGKFSGRHGLK 1023
            DH+ SMRH+E G+   +     + T    N          MRSVRI QIG KFS RHG K
Sbjct: 162  DHSTSMRHSENGMVDQV-----LLT---TNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 213

Query: 1024 RTVGMTCTEEDIPW*RQHPRYHCESTFXXXXXXXXXXXDSST--------MRKVADHMGN 1179
             TVGMT T+ED+PW         E                 T        M KVA HMG 
Sbjct: 214  GTVGMTYTQEDMPW-------TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 266

Query: 1180 EGDATSFSWLYLFNFS 1227
            EGDAT F+ + + N S
Sbjct: 267  EGDATPFTDVTVDNIS 282